31 results on '"Loudon, Kevin"'
Search Results
2. Assessment of biological organ age using molecular pathology in pre-transplant kidney biopsies
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Zhang, Roy, Trotter, Patrick B., McCaffrey, James, Fitzroy, Rory, Trivioli, Giorgio, Stewart, Benjamin J., Ferdinand, John R., Loudon, Kevin W., Riding, Alexandra, West, Jonathan, Ferro, Ashley, and Clatworthy, Menna R.
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- 2024
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3. Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer
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Li, Ruoyan, Ferdinand, John R., Loudon, Kevin W., Bowyer, Georgina S., Laidlaw, Sean, Muyas, Francesc, Mamanova, Lira, Neves, Joana B., Bolt, Liam, Fasouli, Eirini S., Lawson, Andrew R.J., Young, Matthew D., Hooks, Yvette, Oliver, Thomas R.W., Butler, Timothy M., Armitage, James N., Aho, Tev, Riddick, Antony C.P., Gnanapragasam, Vincent, Welsh, Sarah J., Meyer, Kerstin B., Warren, Anne Y., Tran, Maxine G.B., Stewart, Grant D., Cortés-Ciriano, Isidro, Behjati, Sam, Clatworthy, Menna R., Campbell, Peter J., Teichmann, Sarah A., and Mitchell, Thomas J.
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- 2022
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4. #3038 Plasma exchange for refractory IgA Vasculitis
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Trivioli, Giorgio, primary, Willcocks, Lisa, additional, Jones, Rachel, additional, Alamo, Beatriz Sanchez, additional, Smith, Rona, additional, and Loudon, Kevin, additional
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- 2024
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5. Resolving the immune landscape of human prostate at a single-cell level in health and cancer
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Tuong, Zewen Kelvin, Loudon, Kevin W., Berry, Brendan, Richoz, Nathan, Jones, Julia, Tan, Xiao, Nguyen, Quan, George, Anne, Hori, Satoshi, Field, Sarah, Lynch, Andy G., Kania, Katarzyna, Coupland, Paul, Babbage, Anne, Grenfell, Richard, Barrett, Tristan, Warren, Anne Y., Gnanapragasam, Vincent, Massie, Charlie, and Clatworthy, Menna R.
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- 2021
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6. Macrophage metabolic reprogramming presents a therapeutic target in lupus nephritis
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Jing, Chenzhi, Castro-Dopico, Tomas, Richoz, Nathan, Tuong, Zewen K., Ferdinand, John R., Lok, Laurence S. C., Loudon, Kevin W., Banham, Gemma D., Mathews, Rebeccah J., Cader, Zaeem, Fitzpatrick, Susan, Bashant, Kathleen R., Kaplan, Mariana J., Kaser, Arthur, Johnson, Randall S., Murphy, Michael P., Siegel, Richard M., and Clatworthy, Menna R.
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- 2020
7. Multifocal, multiphenotypic tumours arising from an MTORmutation acquired in early embryogenesis
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Pacyna, Clarissa N., Anandapadamanaban, Madhanagopal, Loudon, Kevin W., Hay, Iain M., Perisic, Olga, Li, Ruoyan, Byrne, Matthew, Allen, Laura, Roberts, Kirsty, Hooks, Yvette, Warren, Anne Y., Stewart, Grant D., Clatworthy, Menna R., Teichmann, Sarah A., Behjati, Sam, Campbell, Peter J., Williams, Roger L., and Mitchell, Thomas J.
- Abstract
Embryogenesis is a vulnerable time. Mutations in developmental cells can result in the wide dissemination of cells predisposed to disease within mature organs. We characterised the evolutionary history of four synchronous renal tumours from a 14-year-old girl using whole genome sequencing alongside single cell and bulk transcriptomic sequencing. Phylogenetic reconstruction timed the origin of all tumours to a multipotent embryonic cell committed to the right kidney, around 4 weeks post-conception. Biochemical and structural analysis of their shared MTORmutation, absent from normal tissues, demonstrates enhanced protein flexibility, enabling a FAT domain hinge to dramatically increase activity of mTORC1 and mTORC2. Developmental mutations, not usually detected in traditional genetic screening, have vital clinical importance in guiding prognosis, targeted treatment, and family screening decisions for paediatric tumours.
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- 2024
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8. Neutrophil extracellular traps protect the kidney from ascending infection and are required for a positive leukocyte dipstick test.
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Stewart, Andrew P., Loudon, Kevin W., Routledge, Matthew, Lee, Colin Y. C., Trotter, Patrick, Richoz, Nathan, Gillman, Eleanor, Antrobus, Robin, Mccaffrey, James, Posner, David, Conway Morris, Andrew, Karet Frankl, Fiona E., and Clatworthy, Menna R.
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ARGININE deiminase ,ESCHERICHIA coli ,GENOME-wide association studies ,URINARY organs ,CLINICAL medicine ,URINARY tract infections - Abstract
Lower urinary tract infection (UTI) is common but only rarely complicated by pyelonephritis. However, the mechanisms preventing extension to the kidney are unclear. Here, we identified neutrophil extracellular traps (NETs) in healthy human urine that provide an antibacterial defense strategy within the urinary tract. In both in vivo murine models of UTI where uropathogenic E. coli are inoculated into the bladder and ex vivo human urine models, NETs interacted with uromodulin to form large webs that entrapped the bacteria. Peptidyl arginine deiminase 4 (PADI4) inhibition in mice blocked NETosis and resulted in progression of cystitis into pyelonephritis, suggesting that NETosis of urinary neutrophils acts to prevent bacterial ascent into the kidney. Analysis of UK Biobank data revealed that genetic variants in PADI4 that associated with increased risk of rheumatoid arthritis in multiple genome-wide association studies were consistently associated with reduced susceptibility to UTI. Last, we showed that urine dipstick testing for leukocyte esterase was negative in the presence of intact blood neutrophils but became positive when neutrophils were stimulated to NET, and this could be prevented by selective PADI4 inhibition, demonstrating that this test does not detect absolute neutrophil count, as has long been assumed, but specifically detects neutrophils that have undergone NETosis. These findings highlight the role of NETosis in preventing ascending infections in the urinary tract and improve our understanding of one of the most common clinical tests in medicine. Editor's summary: Lower urinary tract infections (UTIs) rarely ascend to the kidney, but the mechanisms underlying this protection are not fully understood. Here, Stewart and colleagues identified neutrophil extracellular traps (NETs) in the urine of healthy individuals that interacted with uromodulin to form webs and entrap bacteria. Inhibition of peptidyl arginine deiminase type 4 (PADI4) reduced NETosis and increased pyelonephritis in mice challenged with uropathogenic E. coli, and an analysis of UK Biobank data revealed that variants in PADI4 were associated with reduced incidence of UTI. The authors also showed that the leukocyte esterase urine dipstick test specifically detects the presence of NETosing neutrophils, highlighting the importance of NETs in both the prevention and diagnosis of UTI. —Melissa L. Norton [ABSTRACT FROM AUTHOR]
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- 2024
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9. Multifocal, multiphenotypic tumours arising from an MTOR mutation acquired in early embryogenesis
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Pacyna, Clarissa N., primary, Anandapadamanaban, Madhanagopal, additional, Loudon, Kevin W., additional, Hay, Iain M., additional, Perisic, Olga, additional, Li, Ruoyan, additional, Byrne, Matthew, additional, Allen, Laura, additional, Roberts, Kirsty, additional, Hooks, Yvette, additional, Warren, Anne Y., additional, Stewart, Grant D., additional, Clatworthy, Menna R., additional, Teichmann, Sarah A., additional, Behjati, Sam, additional, Campbell, Peter J., additional, Williams, Roger L., additional, and Mitchell, Thomas J., additional
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- 2023
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10. Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors
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Young, Matthew D., Mitchell, Thomas J., Braga, Felipe A. Vieira, Tran, Maxine G. B., Stewart, Benjamin J., Ferdinand, John R., Collord, Grace, Botting, Rachel A., Popescu, Dorin-Mirel, Loudon, Kevin W., Vento-Tormo, Roser, Stephenson, Emily, Cagan, Alex, Farndon, Sarah J., Del Castillo Velasco-Herrera, Martin, Guzzo, Charlotte, Richoz, Nathan, Mamanova, Lira, Aho, Tevita, Armitage, James N., Riddick, Antony C. P., Mushtaq, Imran, Farrell, Stephen, Rampling, Dyanne, Nicholson, James, Filby, Andrew, Burge, Johanna, Lisgo, Steven, Maxwell, Patrick H., Lindsay, Susan, Warren, Anne Y., Stewart, Grant D., Sebire, Neil, Coleman, Nicholas, Haniffa, Muzlifah, Teichmann, Sarah A., Clatworthy, Menna, and Behjati, Sam
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- 2018
11. Renal Sodium Gradient Orchestrates a Dynamic Antibacterial Defense Zone
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Berry, Miriam R., Mathews, Rebeccah J., Ferdinand, John R., Jing, Chenzhi, Loudon, Kevin W., Wlodek, Elizabeth, Dennison, Thomas W., Kuper, Christoph, Neuhofer, Wolfgang, and Clatworthy, Menna R.
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- 2017
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12. Distinct pathogenic roles for resident and monocyte-derived macrophages in lupus nephritis
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Richoz, Nathan, primary, Tuong, Zewen K., additional, Loudon, Kevin W., additional, Patiño-Martínez, Eduardo, additional, Ferdinand, John R., additional, Portet, Anaïs, additional, Bashant, Kathleen R., additional, Thevenon, Emeline, additional, Rucci, Francesca, additional, Hoyler, Thomas, additional, Junt, Tobias, additional, Kaplan, Mariana J., additional, Siegel, Richard M., additional, and Clatworthy, Menna R., additional
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- 2022
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13. Group 3 innate lymphocytes make a distinct contribution to type 17 immunity in bladder defence
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Riding, Alexandra M., primary, Loudon, Kevin W., additional, Guo, Andrew, additional, Ferdinand, John R., additional, Lok, Laurence S.C., additional, Richoz, Nathan, additional, Stewart, Andrew, additional, Castro-Dopico, Tomas, additional, Tuong, Zewen Kelvin, additional, Fiancette, Remi, additional, Bowyer, Georgina S., additional, Fleming, Aaron, additional, Gillman, Eleanor S., additional, Suchanek, Ondrej, additional, Mahbubani, Krishnaa T., additional, Saeb-Parsy, Kourosh, additional, Withers, David, additional, Dougan, Gordan, additional, Clare, Simon, additional, and Clatworthy, Menna R., additional
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- 2022
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14. Traveler Phase 1A Joint Review
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St. John, Clint, Scofield, Jan, Skoog, Mark, Flock, Alex, Williams, Ethan, Guirguis, Luke, Loudon, Kevin, Sutherland, Jeffrey, Lehmann, Richard, Garland, Michael, Patterson, Gayle, Schnarr, Otto, Sanner, Kurt, Idicula, Jinu, Sorokowski, Paul, Ramia, Saravanakumaar Sudarsan, and Al-Hajjeh, Ashraf
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Air Transportation And Safety - Abstract
The briefing contains the preliminary findings and suggestions for improvement of methods used in development and evaluation of a multi monitor runtime assurance architecture for autonomous flight vehicles. Initial system design, implementation, verification, and flight testing has been conducted. As of yet detailed data review is incomplete, and flight testing has been limited to initial monitor force fights. Detailed monitor flight evaluations have yet to be performed.
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- 2017
15. Mapping Single Cell Transcriptomes in the Intra-Tumoural and Associated Territories of Kidney Cancer
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Li, Ruoyan, primary, Ferdinand, John R., additional, Loudon, Kevin, additional, Bowyer, Georgina S., additional, Laidlaw, Sean, additional, Mamanova, Lira, additional, Neves, Joana B., additional, Bolt, Liam, additional, Fasouli, Eirini, additional, Lawson, Andrew, additional, Young, Matthew, additional, Hooks, Yvette, additional, Oliver, Thomas, additional, Butler, Timothy M., additional, Armitage, James, additional, Aho, Tev, additional, Riddick, Anthony C. P., additional, Gnanapragasam, Vincent, additional, Welsh, Sarah, additional, Meyer, Kerstin, additional, Warren, Anne, additional, Tran, Maxine G. B., additional, Stewart, Grant, additional, Behjati, Sam, additional, Clatworthy, Menna R., additional, Campbell, Peter J., additional, Teichmann, Sarah, additional, and Mitchell, Thomas, additional
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- 2022
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16. Multi-regional characterisation of renal cell carcinoma and microenvironment at single cell resolution
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Li, Ruoyan, primary, Ferdinand, John R., additional, Loudon, Kevin W., additional, Bowyer, Georgina S., additional, Mamanova, Lira, additional, Neves, Joana B., additional, Bolt, Liam, additional, Fasouli, Eirini S., additional, Lawson, Andrew R. J., additional, Young, Matthew D., additional, Hooks, Yvette, additional, Oliver, Thomas R. W., additional, Butler, Timothy M., additional, Armitage, James N., additional, Aho, Tev, additional, Riddick, Antony C. P., additional, Gnanapragasam, Vincent, additional, Welsh, Sarah J., additional, Meyer, Kerstin B., additional, Warren, Anne Y., additional, Tran, Maxine G. B., additional, Stewart, Grant D., additional, Behjati, Sam, additional, Clatworthy, Menna R., additional, Campbell, Peter J., additional, Teichmann, Sarah A., additional, and Mitchell, Thomas J., additional
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- 2021
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17. Cardiac decompensation revealing giant cell arteritis
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Nelveg-Kristensen, Karl Emil, Le Goueff, Anouk, Smith, Rona M, Loudon, Kevin, Egan, Allyson C, Jayne, David RW, Smith, Rona M [0000-0002-7438-5156], Egan, Allyson C [0000-0003-3867-816X], and Apollo - University of Cambridge Repository
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Male ,Positron Emission Tomography Computed Tomography ,Giant Cell Arteritis ,cardiovascular system ,Humans ,Middle Aged - Abstract
Cardiac decompensation revealing giant cell arteritis.
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- 2021
18. Fever on an airline flight: a diagnostic challenge
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Trivedi, Sapna, primary, Prasinou, Maria, additional, Loudon, Kevin, additional, Jones, Rachel B, additional, and Smith, Rona M, additional
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- 2021
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19. Aggressive vasculitis after lung transplantation for cystic fibrosis
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Loudon, Kevin W, primary, Parmar, Jasvir, additional, Jayne, David R W, additional, and Jones, Rachel B., additional
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- 2021
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20. Cardiac decompensation revealing giant cell arteritis
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Nelveg-Kristensen, Karl Emil, primary, Le Goueff, Anouk, additional, Smith, Rona M, additional, Loudon, Kevin, additional, Egan, Allyson C, additional, and Jayne, David R W, additional
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- 2021
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21. Tissue Immunity in the Bladder.
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Bowyer, Georgina S., Loudon, Kevin W., Suchanek, Ondrej, and Clatworthy, Menna R.
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The bladder is a major component of the urinary tract, an organ system that expels metabolic waste and excess water, which necessitates proximity to the external environment and its pathogens. It also houses a commensal microbiome. Therefore, its tissue immunity must resist pathogen invasion while maintaining tolerance to commensals. Bacterial infection of the bladder is common, with half of women globally experiencing one or more episodes of cystitis in their lifetime. Despite this, our knowledge of bladder immunity, particularly in humans, is incomplete. Here we consider the current view of tissue immunity in the bladder, with a focus on defense against infection. The urothelium has robust immune functionality, and its defensive capabilities are supported by resident immune cells, including macrophages, dendritic cells, natural killer cells, and γδ T cells. We discuss each in turn and consider why adaptive immune responses are often ineffective in preventing recurrent infection, as well as areas of priority for future research. [ABSTRACT FROM AUTHOR]
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- 2022
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22. Regulatory T Cell Responses in Participants with Type 1 Diabetes after a Single Dose of Interleukin-2: A Non-Randomised, Open Label, Adaptive Dose-Finding Trial
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Todd, John A., Evangelou, Marina, Cutler, Antony J., Pekalski, Marcin L., Walker, Neil M., Stevens, Helen E., Porter, Linsey, Smyth, Deborah J., Rainbow, Daniel B., Ferreira, Ricardo C., Esposito, Laura, Hunter, Kara M. D., Loudon, Kevin, Irons, Kathryn, Yang, Jennie H., Bell, Charles J. M., Schuilenburg, Helen, Heywood, James, Challis, Ben, Neupane, Sankalpa, Clarke, Pamela, Coleman, Gillian, Dawson, Sarah, Goymer, Donna, Anselmiova, Katerina, Kennet, Jane, Brown, Judy, Caddy, Sarah L., Lu, Jia, Greatorex, Jane, Goodfellow, Ian, Wallace, Chris, Tree, Tim I., Evans, Mark, Mander, Adrian P., Bond, Simon, Wicker, Linda S., and Waldron-Lynch, Frank
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Immunotherapy -- Analysis -- Health aspects -- Research ,Interleukin-2 -- Physiological aspects -- Genetic aspects -- Research ,Type 1 diabetes -- Analysis -- Health aspects -- Genetic aspects -- Care and treatment -- Research ,T cells -- Analysis -- Health aspects -- Physiological aspects -- Genetic aspects -- Research ,Biological sciences - Abstract
Background Interleukin-2 (IL-2) has an essential role in the expansion and function of CD4.sup.+ regulatory T cells (Tregs). Tregs reduce tissue damage by limiting the immune response following infection and regulate autoreactive CD4.sup.+ effector T cells (Teffs) to prevent autoimmune diseases, such as type 1 diabetes (T1D). Genetic susceptibility to T1D causes alterations in the IL-2 pathway, a finding that supports Tregs as a cellular therapeutic target. Aldesleukin (Proleukin; recombinant human IL-2), which is administered at high doses to activate the immune system in cancer immunotherapy, is now being repositioned to treat inflammatory and autoimmune disorders at lower doses by targeting Tregs. Methods and Findings To define the aldesleukin dose response for Tregs and to find doses that increase Tregs physiologically for treatment of T1D, a statistical and systematic approach was taken by analysing the pharmacokinetics and pharmacodynamics of single doses of subcutaneous aldesleukin in the Adaptive Study of IL-2 Dose on Regulatory T Cells in Type 1 Diabetes (DILT1D), a single centre, non-randomised, open label, adaptive dose-finding trial with 40 adult participants with recently diagnosed T1D. The primary endpoint was the maximum percentage increase in Tregs (defined as CD3.sup.+ CD4.sup.+ CD25.sup.high CD127.sup.low) from the baseline frequency in each participant measured over the 7 d following treatment. There was an initial learning phase with five pairs of participants, each pair receiving one of five pre-assigned single doses from 0.04 x 10.sup.6 to 1.5 x 10.sup.6 IU/m.sup.2, in order to model the dose-response curve. Results from each participant were then incorporated into interim statistical modelling to target the two doses most likely to induce 10% and 20% increases in Treg frequencies. Primary analysis of the evaluable population (n = 39) found that the optimal doses of aldesleukin to induce 10% and 20% increases in Tregs were 0.101 x 10.sup.6 IU/m.sup.2 (standard error [SE] = 0.078, 95% CI = -0.052, 0.254) and 0.497 x 10.sup.6 IU/m.sup.2 (SE = 0.092, 95% CI = 0.316, 0.678), respectively. On analysis of secondary outcomes, using a highly sensitive IL-2 assay, the observed plasma concentrations of the drug at 90 min exceeded the hypothetical Treg-specific therapeutic window determined in vitro (0.015-0.24 IU/ml), even at the lowest doses (0.040 x 10.sup.6 and 0.045 x 10.sup.6 IU/m.sup.2) administered. A rapid decrease in Treg frequency in the circulation was observed at 90 min and at day 1, which was dose dependent (mean decrease 11.6%, SE = 2.3%, range 10.0%-48.2%, n = 37), rebounding at day 2 and increasing to frequencies above baseline over 7 d. Teffs, natural killer cells, and eosinophils also responded, with their frequencies rapidly and dose-dependently decreased in the blood, then returning to, or exceeding, pretreatment levels. Furthermore, there was a dose-dependent down modulation of one of the two signalling subunits of the IL-2 receptor, the [beta] chain (CD122) (mean decrease = 58.0%, SE = 2.8%, range 9.8%-85.5%, n = 33), on Tregs and a reduction in their sensitivity to aldesleukin at 90 min and day 1 and 2 post-treatment. Due to blood volume requirements as well as ethical and practical considerations, the study was limited to adults and to analysis of peripheral blood only. Conclusions The DILT1D trial results, most notably the early altered trafficking and desensitisation of Tregs induced by a single ultra-low dose of aldesleukin that resolves within 2-3 d, inform the design of the next trial to determine a repeat dosing regimen aimed at establishing a steady-state Treg frequency increase of 20%-50%, with the eventual goal of preventing T1D. Trial Registration ISRCTN Registry ISRCTN27852285; ClinicalTrials.gov NCT01827735, Author(s): John A. Todd 1,*, Marina Evangelou 2, Antony J. Cutler 1, Marcin L. Pekalski 1, Neil M. Walker 1, Helen E. Stevens 1, Linsey Porter 1, Deborah J. Smyth [...]
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- 2016
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23. Spatiotemporal immune zonation of the human kidney
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Stewart, Benjamin J., primary, Ferdinand, John R., additional, Young, Matthew D., additional, Mitchell, Thomas J., additional, Loudon, Kevin W., additional, Riding, Alexandra M., additional, Richoz, Nathan, additional, Frazer, Gordon L., additional, Staniforth, Joy U. L., additional, Vieira Braga, Felipe A., additional, Botting, Rachel A., additional, Popescu, Dorin-Mirel, additional, Vento-Tormo, Roser, additional, Stephenson, Emily, additional, Cagan, Alex, additional, Farndon, Sarah J., additional, Polanski, Krzysztof, additional, Efremova, Mirjana, additional, Green, Kile, additional, Del Castillo Velasco-Herrera, Martin, additional, Guzzo, Charlotte, additional, Collord, Grace, additional, Mamanova, Lira, additional, Aho, Tevita, additional, Armitage, James N., additional, Riddick, Antony C. P., additional, Mushtaq, Imran, additional, Farrell, Stephen, additional, Rampling, Dyanne, additional, Nicholson, James, additional, Filby, Andrew, additional, Burge, Johanna, additional, Lisgo, Steven, additional, Lindsay, Susan, additional, Bajenoff, Marc, additional, Warren, Anne Y., additional, Stewart, Grant D., additional, Sebire, Neil, additional, Coleman, Nicholas, additional, Haniffa, Muzlifah, additional, Teichmann, Sarah A., additional, Behjati, Sam, additional, and Clatworthy, Menna R., additional
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- 2019
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24. Macrophage metabolic reprogramming presents a therapeutic target in lupus nephritis.
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Chenzhi Jing, Tomas Castro-Dopico, Nathan Richoz, Tuong, Zewen K., Ferdinand, John R., Lok, Laurence S. C., Loudon, Kevin W., Banham, Gemma D., Mathews, Rebeccah J., Cader, Zaeem, Fitzpatrick, Susan, Bashant, Kathleen R., Kaplan, Mariana J., Kaser, Arthur, Johnson, Randall S., Murphy, Michael P., Siegel, Richard M., and Clatworthy, Menna R.
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LUPUS nephritis ,SYSTEMIC lupus erythematosus ,IMMUNE complexes ,HYPOXIA-inducible factors ,RHEUMATOID arthritis - Abstract
IgG antibodies cause inflammation and organ damage in autoimmune diseases such as systemic lupus erythematosus (SLE). We investigated the metabolic profile of macrophages isolated from inflamed tissues in immune complex (IC)-associated diseases, including SLE and rheumatoid arthritis, and following IgG Fcγ receptor cross-linking. We found that human and mouse macrophages undergo a switch to glycolysis in response to IgG IC stimulation, mirroring macrophage metabolic changes in inflamed tissue in vivo. This metabolic reprogramming was required to generate a number of proinflammatory mediators, including IL-1β, and was dependent on mTOR and hypoxia-inducible factor (HIF)1α. Inhibition of glycolysis, or genetic depletion of HIF1α, attenuated IgG IC-induced activation of macrophages in vitro, including primary human kidney macrophages. In vivo, glycolysis inhibition led to a reduction in kidney macrophage IL-1β and reduced neutrophil recruitment in a murine model of antibody-mediated nephritis. Together, our data reveal the molecular mechanisms underpinning FcγR-mediated metabolic reprogramming in macrophages and suggest a therapeutic strategy for autoantibody-induced inflammation, including lupus nephritis. [ABSTRACT FROM AUTHOR]
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- 2020
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25. Human Kidney / Tumour Tissue Disaggregation for Single Cell RNA Sequencing (10x Genomics platform) v1
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Loudon, Kevin, primary, Ferdinand, John, additional, Riding, Alexandra, additional, and Clatworthy, Menna, additional
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- 2018
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26. Human Kidney / Tumour Tissue Disaggregation for Fluorescence-activated cell sorting (bulk or single cell) and flow cytometeric analysis v1
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Loudon, Kevin, primary, Riding, Alexandra, additional, Ferdinand, John, additional, and Clatworthy, Menna, additional
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- 2018
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27. Preface
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Brown, Will, Loudon, Kevin, Fisher, James, and Marsland, Laura
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- 2014
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28. Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors
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Young, Matthew D, Mitchell, Thomas J, Vieira Braga, Felipe A, Tran, Maxine GB, Stewart, Benjamin J, Ferdinand, John R, Collord, Grace, Botting, Rachel A, Popescu, Dorin-Mirel, Loudon, Kevin W, Vento-Tormo, Roser, Stephenson, Emily, Cagan, Alex, Farndon, Sarah J, Del Castillo Velasco-Herrera, Martin, Guzzo, Charlotte, Richoz, Nathan, Mamanova, Lira, Aho, Tevita, Armitage, James N, Riddick, Antony CP, Mushtaq, Imran, Farrell, Stephen, Rampling, Dyanne, Nicholson, James, Filby, Andrew, Burge, Johanna, Lisgo, Steven, Maxwell, Patrick H, Lindsay, Susan, Warren, Anne Y, Stewart, Grant D, Sebire, Neil, Coleman, Nicholas, Haniffa, Muzlifah, Teichmann, Sarah A, Clatworthy, Menna, and Behjati, Sam
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Adult ,Genetic Variation ,Humans ,Single-Cell Analysis ,Child ,Kidney ,Transcriptome ,Carcinoma, Renal Cell ,Wilms Tumor ,Kidney Neoplasms ,3. Good health - Abstract
Messenger RNA encodes cellular function and phenotype. In the context of human cancer, it defines the identities of malignant cells and the diversity of tumor tissue. We studied 72,501 single-cell transcriptomes of human renal tumors and normal tissue from fetal, pediatric, and adult kidneys. We matched childhood Wilms tumor with specific fetal cell types, thus providing evidence for the hypothesis that Wilms tumor cells are aberrant fetal cells. In adult renal cell carcinoma, we identified a canonical cancer transcriptome that matched a little-known subtype of proximal convoluted tubular cell. Analyses of the tumor composition defined cancer-associated normal cells and delineated a complex vascular endothelial growth factor (VEGF) signaling circuit. Our findings reveal the precise cellular identities and compositions of human kidney tumors.
29. Regulatory T Cell Responses in Participants with Type 1 Diabetes after a Single Dose of Interleukin-2: A Non-Randomised, Open Label, Adaptive Dose-Finding Trial
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Todd, John A, Evangelou, Marina, Cutler, Antony J, Pekalski, Marcin L, Walker, Neil M, Stevens, Helen E, Porter, Linsey, Smyth, Deborah J, Rainbow, Daniel B, Ferreira, Ricardo C, Esposito, Laura, Hunter, Kara MD, Loudon, Kevin, Irons, Kathryn, Yang, Jennie H, Bell, Charles JM, Schuilenburg, Helen, Heywood, James, Challis, Ben, Neupane, Sankalpa, Clarke, Pamela, Coleman, Gillian, Dawson, Sarah, Goymer, Donna, Anselmiova, Katerina, Kennet, Jane, Brown, Judy, Caddy, Sarah L, Lu, Jia, Greatorex, Jane, Goodfellow, Ian, Wallace, Chris, Tree, Tim I, Evans, Mark, Mander, Adrian P, Bond, Simon, Wicker, Linda S, and Waldron-Lynch, Frank
- Subjects
Adult ,Male ,Adolescent ,Dose-Response Relationship, Drug ,Middle Aged ,T-Lymphocytes, Regulatory ,Recombinant Proteins ,3. Good health ,Immunophenotyping ,Eosinophils ,Killer Cells, Natural ,Young Adult ,Diabetes Mellitus, Type 1 ,Humans ,Interleukin-2 ,Female ,Lymphocyte Count ,Chemokines ,Inflammation Mediators ,Biomarkers - Abstract
BACKGROUND: Interleukin-2 (IL-2) has an essential role in the expansion and function of CD4+ regulatory T cells (Tregs). Tregs reduce tissue damage by limiting the immune response following infection and regulate autoreactive CD4+ effector T cells (Teffs) to prevent autoimmune diseases, such as type 1 diabetes (T1D). Genetic susceptibility to T1D causes alterations in the IL-2 pathway, a finding that supports Tregs as a cellular therapeutic target. Aldesleukin (Proleukin; recombinant human IL-2), which is administered at high doses to activate the immune system in cancer immunotherapy, is now being repositioned to treat inflammatory and autoimmune disorders at lower doses by targeting Tregs. METHODS AND FINDINGS: To define the aldesleukin dose response for Tregs and to find doses that increase Tregs physiologically for treatment of T1D, a statistical and systematic approach was taken by analysing the pharmacokinetics and pharmacodynamics of single doses of subcutaneous aldesleukin in the Adaptive Study of IL-2 Dose on Regulatory T Cells in Type 1 Diabetes (DILT1D), a single centre, non-randomised, open label, adaptive dose-finding trial with 40 adult participants with recently diagnosed T1D. The primary endpoint was the maximum percentage increase in Tregs (defined as CD3+CD4+CD25highCD127low) from the baseline frequency in each participant measured over the 7 d following treatment. There was an initial learning phase with five pairs of participants, each pair receiving one of five pre-assigned single doses from 0.04 × 106 to 1.5 × 106 IU/m2, in order to model the dose-response curve. Results from each participant were then incorporated into interim statistical modelling to target the two doses most likely to induce 10% and 20% increases in Treg frequencies. Primary analysis of the evaluable population (n = 39) found that the optimal doses of aldesleukin to induce 10% and 20% increases in Tregs were 0.101 × 106 IU/m2 (standard error [SE] = 0.078, 95% CI = -0.052, 0.254) and 0.497 × 106 IU/m2 (SE = 0.092, 95% CI = 0.316, 0.678), respectively. On analysis of secondary outcomes, using a highly sensitive IL-2 assay, the observed plasma concentrations of the drug at 90 min exceeded the hypothetical Treg-specific therapeutic window determined in vitro (0.015-0.24 IU/ml), even at the lowest doses (0.040 × 106 and 0.045 × 106 IU/m2) administered. A rapid decrease in Treg frequency in the circulation was observed at 90 min and at day 1, which was dose dependent (mean decrease 11.6%, SE = 2.3%, range 10.0%-48.2%, n = 37), rebounding at day 2 and increasing to frequencies above baseline over 7 d. Teffs, natural killer cells, and eosinophils also responded, with their frequencies rapidly and dose-dependently decreased in the blood, then returning to, or exceeding, pretreatment levels. Furthermore, there was a dose-dependent down modulation of one of the two signalling subunits of the IL-2 receptor, the β chain (CD122) (mean decrease = 58.0%, SE = 2.8%, range 9.8%-85.5%, n = 33), on Tregs and a reduction in their sensitivity to aldesleukin at 90 min and day 1 and 2 post-treatment. Due to blood volume requirements as well as ethical and practical considerations, the study was limited to adults and to analysis of peripheral blood only. CONCLUSIONS: The DILT1D trial results, most notably the early altered trafficking and desensitisation of Tregs induced by a single ultra-low dose of aldesleukin that resolves within 2-3 d, inform the design of the next trial to determine a repeat dosing regimen aimed at establishing a steady-state Treg frequency increase of 20%-50%, with the eventual goal of preventing T1D. TRIAL REGISTRATION: ISRCTN Registry ISRCTN27852285; ClinicalTrials.gov NCT01827735.
30. Regulatory T Cell Responses in Participants with Type 1 Diabetes after a Single Dose of Interleukin-2: A Non-Randomised, Open Label, Adaptive Dose-Finding Trial
- Author
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Todd, John A, Evangelou, Marina, Cutler, Antony J, Pekalski, Marcin L, Walker, Neil M, Stevens, Helen E, Porter, Linsey, Smyth, Deborah J, Rainbow, Daniel B, Ferreira, Ricardo C, Esposito, Laura, Hunter, Kara MD, Loudon, Kevin, Irons, Kathryn, Yang, Jennie H, Bell, Charles JM, Schuilenburg, Helen, Heywood, James, Challis, Ben, Neupane, Sankalpa, Clarke, Pamela, Coleman, Gillian, Dawson, Sarah, Goymer, Donna, Anselmiova, Katerina, Kennet, Jane, Brown, Judy, Caddy, Sarah, Lu, Jia, Greatorex, Jane, Goodfellow, Ian Gordon, Wallace, Chris, Tree, Tim I, Evans, Mark, Mander, Adrian Paul, Bond, Simon, Wicker, Linda S, and Waldron-Lynch, Frank
- Subjects
lymphocytes ,blood counts ,blood ,memory T cells ,T cells ,eosinophils ,regulatory T cells ,3. Good health ,blood plasma - Abstract
BACKGROUND: Interleukin-2 (IL-2) has an essential role in the expansion and function of CD4+ regulatory T cells (Tregs). Tregs reduce tissue damage by limiting the immune response following infection and regulate autoreactive CD4+ effector T cells (Teffs) to prevent autoimmune diseases, such as type 1 diabetes (T1D). Genetic susceptibility to T1D causes alterations in the IL-2 pathway, a finding that supports Tregs as a cellular therapeutic target. Aldesleukin (Proleukin; recombinant human IL-2), which is administered at high doses to activate the immune system in cancer immunotherapy, is now being repositioned to treat inflammatory and autoimmune disorders at lower doses by targeting Tregs. METHODS AND FINDINGS: To define the aldesleukin dose response for Tregs and to find doses that increase Tregs physiologically for treatment of T1D, a statistical and systematic approach was taken by analysing the pharmacokinetics and pharmacodynamics of single doses of subcutaneous aldesleukin in the Adaptive Study of IL-2 Dose on Regulatory T Cells in Type 1 Diabetes (DILT1D), a single centre, non-randomised, open label, adaptive dose-finding trial with 40 adult participants with recently diagnosed T1D. The primary endpoint was the maximum percentage increase in Tregs (defined as CD3+CD4+CD25highCD127low) from the baseline frequency in each participant measured over the 7 d following treatment. There was an initial learning phase with five pairs of participants, each pair receiving one of five pre-assigned single doses from 0.04 × 106 to 1.5 × 106 IU/m2, in order to model the dose-response curve. Results from each participant were then incorporated into interim statistical modelling to target the two doses most likely to induce 10% and 20% increases in Treg frequencies. Primary analysis of the evaluable population (n = 39) found that the optimal doses of aldesleukin to induce 10% and 20% increases in Tregs were 0.101 × 106 IU/m2 (standard error [SE] = 0.078, 95% CI = -0.052, 0.254) and 0.497 × 106 IU/m2 (SE = 0.092, 95% CI = 0.316, 0.678), respectively. On analysis of secondary outcomes, using a highly sensitive IL-2 assay, the observed plasma concentrations of the drug at 90 min exceeded the hypothetical Treg-specific therapeutic window determined in vitro (0.015-0.24 IU/ml), even at the lowest doses (0.040 × 106 and 0.045 × 106 IU/m2) administered. A rapid decrease in Treg frequency in the circulation was observed at 90 min and at day 1, which was dose dependent (mean decrease 11.6%, SE = 2.3%, range 10.0%-48.2%, n = 37), rebounding at day 2 and increasing to frequencies above baseline over 7 d. Teffs, natural killer cells, and eosinophils also responded, with their frequencies rapidly and dose-dependently decreased in the blood, then returning to, or exceeding, pretreatment levels. Furthermore, there was a dose-dependent down modulation of one of the two signalling subunits of the IL-2 receptor, the β chain (CD122) (mean decrease = 58.0%, SE = 2.8%, range 9.8%-85.5%, n = 33), on Tregs and a reduction in their sensitivity to aldesleukin at 90 min and day 1 and 2 post-treatment. Due to blood volume requirements as well as ethical and practical considerations, the study was limited to adults and to analysis of peripheral blood only. CONCLUSIONS: The DILT1D trial results, most notably the early altered trafficking and desensitisation of Tregs induced by a single ultra-low dose of aldesleukin that resolves within 2-3 d, inform the design of the next trial to determine a repeat dosing regimen aimed at establishing a steady-state Treg frequency increase of 20%-50%, with the eventual goal of preventing T1D. TRIAL REGISTRATION: ISRCTN Registry ISRCTN27852285; ClinicalTrials.gov NCT01827735., This is the final version of the article. It first appeared from the Public Library of Science via http://dx.doi.org/10.1371/journal.pmed.1002139
31. Spatiotemporal immune zonation of the human kidney
- Author
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Dorin-Mirel Popescu, Steven Lisgo, Nathan Richoz, Grace Collord, Anne Y. Warren, James Nicholson, Sarah J. Farndon, Andrew Filby, Roser Vento-Tormo, Marc Bajénoff, Tevita Aho, Gordon L. Frazer, Kevin W. Loudon, Rachel A. Botting, Matthew D. Young, Joy Ursula Lauren Staniforth, Grant D. Stewart, Martin Del Castillo Velasco-Herrera, Benjamin J. Stewart, Stephen Farrell, Nicholas Coleman, Charlotte Guzzo, James N. Armitage, Menna R. Clatworthy, Emily Stephenson, Johanna Burge, Felipe A. Vieira Braga, Muzlifah Haniffa, Imran Mushtaq, Neil J. Sebire, Thomas J. Mitchell, Kile Green, Susan Lindsay, Lira Mamanova, Krzysztof Polanski, Sam Behjati, Alex Cagan, Alexandra M. Riding, Antony C. P. Riddick, John R. Ferdinand, Dyanne Rampling, Sarah A. Teichmann, Mirjana Efremova, Defence Science and Technology Organisation (DSTO), Australian Government, Great Ormond Street Hospital for Children [London] (GOSH), Newcastle University [Newcastle], Institute of Genetic Medicine, Centre d'Immunologie de Marseille - Luminy (CIML), Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Aix Marseille Université (AMU), Department of Histopathology & Pediatric Laboratory Medicine, Great Ormond Street Hospital, Institute of Cellular Medicine [Newcastle], Stewart, Benjamin J [0000-0003-4522-0085], Ferdinand, John R [0000-0003-0936-0128], Young, Matthew D [0000-0003-0937-5290], Mitchell, Thomas J [0000-0003-0761-9503], Loudon, Kevin W [0000-0001-9055-6894], Riding, Alexandra M [0000-0002-6915-5671], Staniforth, Joy UL [0000-0003-2817-0098], Vieira Braga, Felipe A [0000-0003-0206-9258], Botting, Rachel A [0000-0001-9595-4605], Stephenson, Emily [0000-0002-4244-4019], Cagan, Alex [0000-0002-7857-4771], Farndon, Sarah J [0000-0001-6024-4267], Polanski, Krzysztof [0000-0002-2586-9576], Del Castillo Velasco-Herrera, Martin [0000-0001-5956-0211], Guzzo, Charlotte [0000-0003-3742-5961], Collord, Grace [0000-0003-1924-4411], Mamanova, Lira [0000-0003-1463-8622], Aho, Tevita [0000-0001-8456-9285], Mushtaq, Imran [0000-0002-7930-0342], Lisgo, Steven [0000-0001-5186-3971], Lindsay, Susan [0000-0003-2980-4582], Stewart, Grant D [0000-0003-3188-9140], Haniffa, Muzlifah [0000-0002-3927-2084], Teichmann, Sarah A [0000-0002-6294-6366], Behjati, Sam [0000-0002-6600-7665], Clatworthy, Menna R [0000-0002-3340-9828], Apollo - University of Cambridge Repository, and Aix Marseille Université (AMU)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)
- Subjects
Adult ,Myeloid ,Neutrophils ,Transgene ,Mice, Transgenic ,Biology ,Kidney ,[SDV.IMM.II]Life Sciences [q-bio]/Immunology/Innate immunity ,Article ,03 medical and health sciences ,0302 clinical medicine ,Immune system ,Fetus ,Single-cell analysis ,medicine ,Animals ,Humans ,Myeloid Cells ,Lymphocytes ,RNA-Seq ,030304 developmental biology ,Regulation of gene expression ,0303 health sciences ,Multidisciplinary ,Macrophages ,Gene Expression Regulation, Developmental ,Epithelial Cells ,biochemical phenomena, metabolism, and nutrition ,Epithelium ,3. Good health ,Cell biology ,Mice, Inbred C57BL ,medicine.anatomical_structure ,Urinary Tract Infections ,bacteria ,Female ,Single-Cell Analysis ,030217 neurology & neurosurgery ,Homeostasis - Abstract
Immune landscape of the human kidney Single-cell RNA sequencing has begun to shed light on the full cellular diversity of specific organs. However, these studies rarely examine organ-specific immune cells. Stewart et al. sequenced healthy adult and fetal kidney samples at a single-cell level to define the heterogeneity in epithelial, myeloid, and lymphoid cells. From this dataset, they identified zonation of cells, with relevance to disease and the varied perturbations that occur in different tumor settings. This profiling of the human kidney generates a comprehensive census of existing cell populations that will help inform the diagnosis and treatment of kidney-related diseases. Science , this issue p. 1461
- Published
- 2018
- Full Text
- View/download PDF
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