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12 results on '"Lou, Yunian"'

1. 100 Nano-radian Surface Slope Metrology with the Upgraded ALS LTP-II

Author

Ali, Zulfiqar, McKinney, Wayne R., Anders, Mark, Barber, Samuel K., Domning, Ed, Morrison, Gregory, Salmassi, Farhad, Smith, Brian, Yashchuk, Valeriy V., and Lou, Yunian

Subjects
slope measurement, LTP, long trace profiler, optical metrology, x-ray optics, synchrotron radiation, beamline
Published
2010

2. The sequence and analysis of duplication rich human chromosome 16

Author

Martin, Joel, Han, Cliff, Gordon, Laurie A., Terry, Astrid, Prabhakar, Shyam, She, Xinwei, Xie, Gary, Hellsten, Uffe, Man Chan, Yee, Altherr, Michael, Couronne, Olivier, Aerts, Andrea, Bajorek, Eva, Black, Stacey, Blumer, Heather, Branscomb, Elbert, Brown, Nancy C., Bruno, William J., Buckingham, Judith M., Callen, David F., Campbell, Connie S., Campbell, Mary L., Campbell, Evelyn W., Caoile, Chenier, Challacombe, Jean F., Chasteen, Leslie A., Chertkov, Olga, Chi, Han C., Christensen, Mari, Clark, Lynn M., Cohn, Judith D., Denys, Mirian, Detter, John C., Dickson, Mark, Dimitrijevic-Bussod, Mira, Escobar, Julio, Fawcett, Joseph J., Flowers, Dave, Fotopulos, Dea, Glavina, Tijana, Gomez, Maria, Gonzales, Eidelyn, Goodstein, David, Goodwin, Lynne A., Grady, Deborah L., Grigoriev, Igor, Groza, Matthew, Hammon, Nancy, Hawkins, Trevor, Haydu, Lauren, Hildebrand, Carl E., Huang, Wayne, Israni, Sanjay, Jett, Jamie, Jewett, Phillip E., Kadner, Kristen, Kimball, Heather, Kobayashi, Arthur, Krawczyk, Marie-Claude, Leyba, Tina, Longmire, Jonathan L., Lopez, Frederick, Lou, Yunian, Lowry, Steve, Ludeman, Thom, Mark, Graham A., Mcmurray, Kimberly L., Meincke, Linda J., Morgan, Jenna, Moyzis, Robert K., Mundt, Mark O., Munk, A. Christine, Nandkeshwar, Richard D., Pitluck, Sam, Pollard, Martin, Predki, Paul, Parson-Quintana, Beverly, Ramirez, Lucia, Rash, Sam, Retterer, James, Ricke, Darryl O., Robinson, Donna L., Rodriguez, Alex, Salamov, Asaf, Saunders, Elizabeth H., Scott, Duncan, Shough, Timothy, Stallings, Raymond L., Stalvey, Malinda, Sutherland, Robert D., Tapia, Roxanne, Tesmer, Judith G., Thayer, Nina, Thompson, Linda S., Tice, Hope, Torney, David C., Tran-Gyamfi, Mary, Tsai, Ming, Ulanovsky, Levy E., and Ustaszewska, Anna

Subjects
Applied life sciences
Abstract

We report here the 78,884,754 base pairs of finished human chromosome 16 sequence, representing over 99.9 percent of its euchromatin. Manual annotation revealed 880 protein coding genes confirmed by 1,637 aligned transcripts, 19 tRNA genes, 341 pseudogenes and 3 RNA pseudogenes. These genes include metallothionein, cadherin and iroquois gene families, as well as the disease genes for polycystic kidney disease and acute myelomonocytic leukemia. Several large-scale structural polymorphisms spanning hundreds of kilobasepairs were identified and result in gene content differences across humans. One of the unique features of chromosome 16 is its high level of segmental duplication, ranked among the highest of the human autosomes. While the segmental duplications are enriched in the relatively gene poor pericentromere of the p-arm, some are involved in recent gene duplication and conversion events which are likely to have had an impact on the evolution of primates and human disease susceptibility.

Published
2004

3. The complete sequence of human chromosome 5

Author

Schmutz, Jeremy, Martin, Joel, Terry, Astrid, Couronne, Olivier, Grimwood, Jane, Lowry, State, Gordon, Laurie A., Scott, Duncan, Xie, Gary, Huang, Wayne, Hellsten, Uffe, Tran-Gyamfi, Mary, She, Xinwei, Prabhakar, Shyam, Aerts, Andrea, Altherr, Michael, Bajorek, Eva, Black, Stacey, Branscomb, Elbert, Caoile, Chenier, Challacombe, Jean F., Chan, Yee Man, Denys, Mirian, Detter, Chris, Escobar, Julio, Flowers, Dave, Fotopulos, Dea, Glavina, Tijana, Gomez, Maria, Gonzales, Eidelyn, Goodstenin, David, Grigoriev, Igor, Groza, Matthew, Hammon, Nancy, Hawkins, Trevor, Haydu, Lauren, Israni, Sanjay, Jett, Jamie, Kadner, Kristen, Kimbal, Heather, Kobayashi, Arthur, Lopez, Frederick, Lou, Yunian, Martinez, Diego, Medina, Catherine, Morgan, Jenna, Nandkeshwar, Richard, Noonan, James P., Pitluck, Sam, Pollard, Martin, Predki, Paul, Priest, James, Ramirez, Lucia, Rash, Sam, Retterer, James, Rodriguez, Alex, Rogers, Stephanie, Salamov, Asaf, Salazar, Angelica, Thayer, Nina, Tice, Hope, Tsai, Ming, Ustaszewska, Anna, Vo, Nu, Wheeler, Jeremy, Wu, Kevin, Yang, Joan, Dickson, Mark, Cheng, Jan-Fang, Eichler, Evan E., Olsen, Anne, Pennacchio, Len A., Rokhsar, Daniel S., Richardson, Paul, Lucas, Susan M., Myers, Richard M., and Rubin, Edward M.

Subjects
Applied life sciences
Abstract

Chromosome 5 is one of the largest human chromosomes yet has one of the lowest gene densities. This is partially explained by numerous gene-poor regions that display a remarkable degree of noncoding and syntenic conservation with non-mammalian vertebrates, suggesting they are functionally constrained. In total, we compiled 177.7 million base pairs of highly accurate finished sequence containing 923 manually curated protein-encoding genes including the protocadherin and interleukin gene families and the first complete versions of each of the large chromosome 5 specific internal duplications. These duplications are very recent evolutionary events and play a likely mechanistic role, since deletions of these regions are the cause of debilitating disorders including spinal muscular atrophy (SMA).

Published
2004

4. Production workflow tracking and QC analysis

Author

Kimball, Heather, Trong, Stephan, Kobayashi, Art, Pitluck, Sam, Lou, Yunian, and Nolan, Matt

Subjects
workflow tracking DNA sequencing QC analysis
Abstract

The Joint Genome Institute Production Genomics Facility (PGF) has produced over 2.75 billion bases of draft paired-end sequencing since January 1, 2001. Our sequencing methodologies incorporate two types of DNA template generation: inoculation/SPRI purification and Rolling Circle Amplification (RCA). In order to manage the flow of samples through these processes, a robust database tracking system was developed using ORACLE. Data input and reporting for the workflow has been produced using a combination of commercial database development software and in-house programs. These include ORACLE s WebDB and CGI Perl programming. By leveraging the rapid report and form development cycle using WebDB and augmenting this with the flexibility of in-house programming, we have efficiently deployed a critical laboratory information management system for our data tracking.

Published
2001

5. The DNA sequence and biology of human chromosome 19

Author

Grimwood, Jane, Gordon, Laurie A., Olsen, Anne, Terry, Astrid, Schmutz, Jeremy, Lamerdin, Jane, Hellsten, Uffe, Goodstein, David, Couronne, Olivier, Tran-Gyamfi, Mary, Aerts, Andrea, Altherr, Michael, Ashworth, Linda, Bajorek, Eva, Black, Stacey, Branscomb, Elbert, Caenepeel, Sean, Carrano, Anthony, Caoile, Chenier, Man Chan, Yee, Christensen, Mari, Cleland, Catherine A., Copeland, Alex, Dalin, Eileen, Dehal, Paramvir, Denys, Mirian, Detter, John C., Escobar, Julio, Flowers, Dave, Fotopulos, Dea, Garcia, Carmen, Georgescu, Anca M., Glavina, Tijana, Gomez, Maria, Gonzales, Eidelyn, Groza, Matthew, Hammon, Nancy, Hawkins, Trevor, Haydu, Lauren, Ho, Isaac, Huang, Wayne, Israni, Sanjay, Jett, Jamie, Kadner, Kristen, Kimball, Heather, Kobayashi, Arthur, Larionov, Vladimer, Leem, Sun-Hee, Lopez, Frederick, Lou, Yunian, Lowry, Steve, Malfatti, Stephanie, Martinez, Diego, McCready, Paula, Medina, Catherine, Morgan, Jenna, Nelson, Kathryn, Nolan, Matt, Ovcharenko, Ivan, Pitluck, Sam, Pollard, Martin, Popkie, Anthony P., Predki, Paul, Quan, Glenda, Ramirez, Lucia, Rash, Sam, Retterer, James, Rodriguez, Alex, Rogers, Stephanine, Salamov, Asaf, Salazar, Angelica, She, Xinwei, Smith, Doug, Slezak, Tom, Solovyev, Victor, Thayer, Nina, Tice, Hope, Tsai, Ming, Ustaszewska, Anna, Vo, Nu, Wagner, Mark, Wheeler, Jeremy, Wu, Kevin, Xie, Gary, Yang, Joan, Dubchak, Inna, Furey, Terrence S., DeJong, Pieter, Dickson, Mark, Gordon, David, Eichler, Evan E., Pennacchio, Len A., Richardson, Paul, Stubbs, Lisa, Rokhsar, Daniel S., Myers, Richard M., Rubin, Edward M., and Lucas, Susan M.

Published
2004
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6. The DNA sequence and comparative analysis of human chromosome 5

Author

Schmutz, Jeremy, Martin, Joel, Terry, Astrid, Couronne, Olivier, Grimwood, Jane, Lowry, Steve, Gordon, Laurie A., Scott, Duncan, Xie, Gary, Huang, Wayne, Hellsten, Uffe, Tran-Gyamfi, Mary, She, Xinwei, Prabhakar, Shyam, Aerts, Andrea, Altherr, Michael, Bajorek, Eva, Black, Stacey, Branscomb, Elbert, Caoile, Chenier, Challacombe, Jean F., Man Chan, Yee, Denys, Mirian, Detter, John C., Escobar, Julio, Flowers, Dave, Fotopulos, Dea, Glavina, Tijana, Gomez, Maria, Gonzales, Eidelyn, Goodstein, David, Grigoriev, Igor, Groza, Matthew, Hammon, Nancy, Hawkins, Trevor, Haydu, Lauren, Israni, Sanjay, Jett, Jamie, Kadner, Kristen, Kimball, Heather, Kobayashi, Arthur, Lopez, Frederick, Lou, Yunian, Martinez, Diego, Medina, Catherine, Morgan, Jenna, Nandkeshwar, Richard, Noonan, James P., Pitluck, Sam, Pollard, Martin, Predki, Paul, Priest, James, Ramirez, Lucia, Retterer, James, Rodriguez, Alex, Rogers, Stephanie, Salamov, Asaf, Salazar, Angelica, Thayer, Nina, Tice, Hope, Tsai, Ming, Ustaszewska, Anna, Vo, Nu, Wheeler, Jeremy, Wu, Kevin, Yang, Joan, Dickson, Mark, Cheng, Jan-Fang, Eichler, Evan E., Olsen, Anne, Pennacchio, Len A., Rokhsar, Daniel S., Richardson, Paul, Lucas, Susan M., Myers, Richard M., and Rubin, Edward M.

Subjects
Environmental issues, Science and technology, Zoology and wildlife conservation
Abstract

Author(s): Jeremy Schmutz (corresponding author) [1]; Joel Martin [2]; Astrid Terry [2]; Olivier Couronne [3]; Jane Grimwood [1]; Steve Lowry [2]; Laurie A. Gordon [2, 4]; Duncan Scott [2]; Gary [...]

Published
2004
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7. Studies in optimal configuration of the LTP

Author

McKinney, Wayne R., primary, Anders, Mark, additional, Barber, Samuel K., additional, Domning, Edward E., additional, Lou, Yunian, additional, Morrison, Gregory Y., additional, Salmassi, Farhad, additional, Smith, Brian V., additional, and Yashchuk, Valeriy V., additional

Published
2010
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8. The sequence and analysis of duplication-rich human chromosome 16

Author

Martin, Joel, primary, Han, Cliff, additional, Gordon, Laurie A., additional, Terry, Astrid, additional, Prabhakar, Shyam, additional, She, Xinwei, additional, Xie, Gary, additional, Hellsten, Uffe, additional, Chan, Yee Man, additional, Altherr, Michael, additional, Couronne, Olivier, additional, Aerts, Andrea, additional, Bajorek, Eva, additional, Black, Stacey, additional, Blumer, Heather, additional, Branscomb, Elbert, additional, Brown, Nancy C., additional, Bruno, William J., additional, Buckingham, Judith M., additional, Callen, David F., additional, Campbell, Connie S., additional, Campbell, Mary L., additional, Campbell, Evelyn W., additional, Caoile, Chenier, additional, Challacombe, Jean F., additional, Chasteen, Leslie A., additional, Chertkov, Olga, additional, Chi, Han C., additional, Christensen, Mari, additional, Clark, Lynn M., additional, Cohn, Judith D., additional, Denys, Mirian, additional, Detter, John C., additional, Dickson, Mark, additional, Dimitrijevic-Bussod, Mira, additional, Escobar, Julio, additional, Fawcett, Joseph J., additional, Flowers, Dave, additional, Fotopulos, Dea, additional, Glavina, Tijana, additional, Gomez, Maria, additional, Gonzales, Eidelyn, additional, Goodstein, David, additional, Goodwin, Lynne A., additional, Grady, Deborah L., additional, Grigoriev, Igor, additional, Groza, Matthew, additional, Hammon, Nancy, additional, Hawkins, Trevor, additional, Haydu, Lauren, additional, Hildebrand, Carl E., additional, Huang, Wayne, additional, Israni, Sanjay, additional, Jett, Jamie, additional, Jewett, Phillip B., additional, Kadner, Kristen, additional, Kimball, Heather, additional, Kobayashi, Arthur, additional, Krawczyk, Marie-Claude, additional, Leyba, Tina, additional, Longmire, Jonathan L., additional, Lopez, Frederick, additional, Lou, Yunian, additional, Lowry, Steve, additional, Ludeman, Thom, additional, Manohar, Chitra F., additional, Mark, Graham A., additional, McMurray, Kimberly L., additional, Meincke, Linda J., additional, Morgan, Jenna, additional, Moyzis, Robert K., additional, Mundt, Mark O., additional, Munk, A. Christine, additional, Nandkeshwar, Richard D., additional, Pitluck, Sam, additional, Pollard, Martin, additional, Predki, Paul, additional, Parson-Quintana, Beverly, additional, Ramirez, Lucia, additional, Rash, Sam, additional, Retterer, James, additional, Ricke, Darryl O., additional, Robinson, Donna L., additional, Rodriguez, Alex, additional, Salamov, Asaf, additional, Saunders, Elizabeth H., additional, Scott, Duncan, additional, Shough, Timothy, additional, Stallings, Raymond L., additional, Stalvey, Malinda, additional, Sutherland, Robert D., additional, Tapia, Roxanne, additional, Tesmer, Judith G., additional, Thayer, Nina, additional, Thompson, Linda S., additional, Tice, Hope, additional, Torney, David C., additional, Tran-Gyamfi, Mary, additional, Tsai, Ming, additional, Ulanovsky, Levy E., additional, Ustaszewska, Anna, additional, Vo, Nu, additional, Scott White, P., additional, Williams, Albert L., additional, Wills, Patricia L., additional, Wu, Jung-Rung, additional, Wu, Kevin, additional, Yang, Joan, additional, DeJong, Pieter, additional, Bruce, David, additional, Doggett, Norman A., additional, Deaven, Larry, additional, Schmutz, Jeremy, additional, Grimwood, Jane, additional, Richardson, Paul, additional, Rokhsar, Daniel S., additional, Eichler, Evan E., additional, Gilna, Paul, additional, Lucas, Susan M., additional, Myers, Richard M., additional, Rubin, Edward M., additional, and Pennacchio, Len A., additional

Published
2004
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10. Shell effect in transition matrix element of two-body residual interaction

Author

Jiang Chenglie, Lou Yunian, Yu Quan, Han Shu-Kui, Xu Jun, Zhou Guihua, Li Qingli, Cheng Yehao, and Zhao Kui

Subjects
Materials science, Nuclear Theory, Shell (structure), Stochastic matrix, General Physics and Astronomy, Atomic physics, Residual, Square (algebra), Excitation
Abstract

The prediction that there might be shell effect in pre-equilibrium emission of (α, p) reaction is true. It seems that there is also shell effect in the change of the average value of the square of transition matrix element of two-body residual interaction with different target nuclei at the lower excitation energy.

Published
1987

11. The Use of CsI(Tl) Scintillators with Photodiode Read-Out in Heavy Ion Experiments

Author

G. Nebbia, B. Fornal, Lou Yunian, D. Fabris, J. B. Natowitz, G. Prete, R. Wada, and Giuseppe Viesti

Subjects
Physics, Nuclear and High Energy Physics, Physics::Instrumentation and Detectors, business.industry, Detector, Phosphor, Scintillator, Particle detector, Particle identification, Photodiode, law.invention, Semiconductor detector, Nuclear physics, Nuclear Energy and Engineering, law, Scintillation counter, Optoelectronics, Electrical and Electronic Engineering, Nuclear Experiment, business
Abstract

Nuclear physics studies with heavy ions at intermediate energy (10-100 MeV/n) require a new generation of detector systems. We studied the performance of ?E-E telescopes employing transmission silicon detectors (SSBD and PIN) and CsI(Tl) scintillators with photodiode read-outs The active area of the detectors is 1 cm2 and 20 cm2. Good particle identification and energy resolution have been obtained detecting light particles and heavy fragments up to 25 Mev/?.

Published
1987

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