1. Diversity and structure of bacterial communities associated with P hanerochaete chrysosporium during wood decay
- Author
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Hervé, Vincent, Le Roux, Xavier, Uroz, Stéphane, Gelhaye, Eric, Frey-Klett, Pascale, Interactions Arbres-Microorganismes (IAM), Université de Lorraine (UL)-Institut National de la Recherche Agronomique (INRA), Laboratoire d'Ecologie Microbienne - UMR 5557 (LEM), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Ecole Nationale Vétérinaire de Lyon (ENVL)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Ecole Nationale Vétérinaire de Lyon (ENVL), Institut National de la Recherche Agronomique (INRA)-Université de Lorraine (UL), Unité de recherche Biogéochimie des Ecosystèmes Forestiers (BEF), Institut National de la Recherche Agronomique (INRA), Lorraine Region, an ANR project [ANR-09-BLAN-0012], French National Research Agency (ANR) as part of the 'Investissements d'Avenir' programme [ANR-11-LABX-0002-01], INRA-EFPA, [IFR110/EFABA], Centre National de la Recherche Scientifique (CNRS)-Ecole Nationale Vétérinaire de Lyon (ENVL)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National de la Recherche Agronomique (INRA)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS), Ecologie microbienne ( EM ), Centre National de la Recherche Scientifique ( CNRS ) -Ecole Nationale Vétérinaire de Lyon ( ENVL ) -Université Claude Bernard Lyon 1 ( UCBL ), Université de Lyon-Université de Lyon-Institut National de la Recherche Agronomique ( INRA ) -VetAgro Sup ( VAS ), Interactions Arbres-Microorganismes ( IAM ), Institut National de la Recherche Agronomique ( INRA ) -Université de Lorraine ( UL ), Unité de recherche Biogéochimie des Ecosystèmes Forestiers ( BEF ), and Institut National de la Recherche Agronomique ( INRA )
- Subjects
Xanthomonadaceae ,[SDV.SA]Life Sciences [q-bio]/Agricultural sciences ,[ SDV.BV ] Life Sciences [q-bio]/Vegetal Biology ,Time Factors ,Burkholderia ,[ SDV.TOX ] Life Sciences [q-bio]/Toxicology ,[SDV.BID]Life Sciences [q-bio]/Biodiversity ,Phanerochaete ,complex mixtures ,[ SDV.EE ] Life Sciences [q-bio]/Ecology, environment ,Trees ,RNA, Ribosomal, 16S ,Fagus ,[SDV.BV]Life Sciences [q-bio]/Vegetal Biology ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,[ SDV.BBM ] Life Sciences [q-bio]/Biochemistry, Molecular Biology ,[ SDV.SA ] Life Sciences [q-bio]/Agricultural sciences ,Soil Microbiology ,[ SDV.BID ] Life Sciences [q-bio]/Biodiversity ,[SDV.EE]Life Sciences [q-bio]/Ecology, environment ,Phanerochaete chrysosporium ,Microbiota ,technology, industry, and agriculture ,High-Throughput Nucleotide Sequencing ,Genes, rRNA ,Biodiversity ,Wood ,Phanerochaete chrysosporium, wood decay ,[SDV.TOX]Life Sciences [q-bio]/Toxicology ,wood decay ,Rhizobium ,[SDV.EE.IEO]Life Sciences [q-bio]/Ecology, environment/Symbiosis - Abstract
International audience; Wood recycling is key to forest biogeochemical cycles, largely driven by microorganisms such as white-rot fungi which naturally coexist with bacteria in the environment. We have tested whether and to what extent the diversity of the bacterial community associated with wood decay is determined by wood and/or by white-rot fungus Phanerochaete chryso- sporium. We combined a microcosm approach with an enrichment procedure, using beech sawdust inoculated with or without P. chrysosporium. During 18 weeks, we used 16S rRNA gene-based pyro- sequencing to monitor the forest bacterial community inoculated into these microcosms. We found bacterial communities associated with wood to be substan- tially less diverse than the initial forest soil inoculum. The presence of most bacterial operational taxonomic units (OTUs) varied over time and between replicates, regardless of their treatment, suggestive of the sto- chastic processes. However, we observed two OTUs belonging to Xanthomonadaceae and Rhizobium, together representing 50% of the relative bacterial abundance, as consistently associated with the wood substrate, regardless of fungal presence. Moreover, after 12 weeks, the bacterial community composition based on relative abundance was significantly modi- fied by the presence of the white-rot fungus. Effec- tively, members of the Burkholderia genus were Wood recycling is key to forest biogeochemical cycles, largely driven by microorganisms such as white-rot fungi which naturally coexist with bacteria in the environment. We have tested whether and to what extent the diversity of the bacterial community associated with wood decay is determined by wood and/or by white-rot fungus Phanerochaete chrysosporium. We combined a microcosm approach with an enrichment procedure, using beech sawdust inoculated with or without P. chrysosporium. During 18 weeks, we used 16S rRNA gene-based pyrosequencing to monitor the forest bacterial community inoculated into these microcosms. We found bacterial communities associated with wood to be substantially less diverse than the initial forest soil inoculum. The presence of most bacterial operational taxonomic units (OTUs) varied over time and between replicates, regardless of their treatment, suggestive of the stochastic processes. However, we observed two OTUs belonging to Xanthomonadaceae and Rhizobium, together representing 50% of the relative bacterial abundance, as consistently associated with the wood substrate, regardless of fungal presence. Moreover, after 12 weeks, the bacterial community composition based on relative abundance was significantly modified by the presence of the white-rot fungus. Effectively, members of the Burkholderia genus were always associated with P. chrysosporium, representing potential taxonomic bioindicators of the white-rot mycosphere .
- Published
- 2014
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