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Rapidly changing conditions alter disturbance patterns, highlighting the need to better understand how the transition from pulse disturbances to more persistent stress will impact ecosystem dynamics. We conducted a global analysis of the impacts of eleven acute disturbances on reef integrity using the rate of change of coral cover as a measure of damage. Then, we evaluated how the magnitude of the damage due to thermal stress, cyclones, and diseases varied among tropical Atlantic and Indo-Pacific reefs and whether the cumulative impact of thermal stress and cyclones was able to modulate the responses of reefs to future events. We found that reef damage largely depends on the condition of a reef before a disturbance, disturbance intensity, and biogeographic region, regardless of the type of disturbance. Changes in coral cover after bleaching events were largely influenced by the cumulative stress of past disturbances and did not depend on disturbance intensity or initial coral cover, which suggests that an ecological memory is present within coral communities. In contrast, the effect of cyclones (and likely other physical impacts) was primarily modulated by the initial reef condition and did not appear to be influenced by previous impacts. Our findings also underscore that coral reefs can recover if stressful conditions decrease, yet the lack of action to reduce anthropogenic impacts and greenhouse gas emissions continues to trigger reef degradation. We uphold that evidence-based strategies can guide managers to make better decisions to prepare for future disturbances.

Introduction: Hermatypic corals have the capacity to construct the physical reef-framework and maintain the balance of coral reef functionality. However, in the past three decades, coral communities have been menaced by natural and anthropic pressures, resulting in an abrupt coral cover decline, and slow natural recovery. To mitigate coral reef collapse, assisted restoration techniques has been implemented and improved worldwide, However, the long-term effects of such interventions on ecological attributes have been scarcely reported. Objective: This study evaluated the effect of assisted coral intervention on calcium carbonate production (kg CaCO3 m-2 yr-1) and ecological volume (cm3) yielded by branching and massive corals from the central Mexican Pacific. Methods: We used colony size, extension rate, and skeletal density measurements of direct outplanted Pocillopora and Pavona coral species to calculate coral carbonate production, ecological volume, and model their long-term potential. Results: Coral carbonate produced after one-year of outplanting increased by 42 % (1.17 kg CaCO3 m-2 yr-1), where Pocillopora spp. and Pavona clavus corals contribute with 0.97 and 0.20 kg CaCO3 m-2 yr-1, respectively. The ecological volume also increased by 384 cm3 for Pocillopora and 56 cm3 for Pavona after one year period. Furthermore, the results suggest that long-term coral restoration actions (10 years) have the potential to significantly increase carbonate production. Conclusions: our data indicate that coral restoration initiatives have the potential to help mitigate the current low calcium carbonate production of Mexican Pacific reefs and may significantly contribute to the long-term maintenance of reef-framework based on ecological engineering tools, such initiatives represent essential functional properties related to reef ecosystem services provision.

Ocean warming is increasing the incidence, scale, and severity of global-scale coral bleaching and mortality, culminating in the third global coral bleaching event that occurred during record marine heatwaves of 2014-2017. While local effects of these events have been widely reported, the global implications remain unknown. Analysis of 15,066 reef surveys during 2014-2017 revealed that 80% of surveyed reefs experienced significant coral bleaching and 35% experienced significant coral mortality. The global extent of significant coral bleaching and mortality was assessed by extrapolating results from reef surveys using comprehensive remote-sensing data of regional heat stress. This model predicted that 51% of the world’s coral reefs suffered significant bleaching and 15% significant mortality, surpassing damage from any prior global bleaching event. These observations demonstrate that global warming’s widespread damage to coral reefs is accelerating and underscores the threat anthropogenic climate change poses for the irreversible transformation of these essential ecosystems.

Coral reefs in the wider Caribbean declined in hard coral cover by ~80% since the 1970s, but spatiotemporal analyses for sub-regions are lacking. Here, we explored benthic change patterns in the Mexican Caribbean reefs through meta-analysis between 1978 and 2016 including 125 coral reef sites. Findings revealed that hard coral cover decreased from ~26% in the 1970s to 16% in 2016, whereas macroalgae cover increased to ~30% in 2016. Both groups showed high spatiotemporal variability. Hard coral cover declined in total by 12% from 1978 to 2004 but increased again by 5% between 2005 and 2016 indicating some coral recovery after the 2005 mass bleaching event and hurricane impacts. In 2016, more than 80% of studied reefs were dominated by macroalgae, while only 15% were dominated by hard corals. This stands in contrast to 1978 when all reef sites surveyed were dominated by hard corals. This study is among the first within the Caribbean region that reports local recovery in coral cover in the Caribbean, while other Caribbean reefs have failed to recover. Most Mexican Caribbean coral reefs are now no longer dominated by hard corals. In order to prevent further reef degradation, viable and reliable conservation alternatives are required.

Anthropogenic and natural disturbances have modified coral reef ecosystems over the last decades, ultimately, exerting negative impacts on the persistence of the carbonated matrix and the physical function. In 2014, the Caribbean region saw the onset of a new deadly coral disease, often known as the stony coral tissue loss disease. In summer of 2018, the outbreak was first reported in the Mexican Caribbean in a diving site named ‘Fish Market’. From July 2018 to March 2019, surveys were made to assess the impacts of this new outbreak in the stony coral community in terms of composition and the effect on the coral community calcification. This disease outbreak had severe consequences for this site. Several colonies of susceptible species were lost, which resulted in significant changes in the coral community composition and reductions in the gross carbonate production in a period of only 8 months.

Understanding the effects and benefits provided by the design and management of Marine Protected Areas (MPAs) is crucial for developing cost‐effective management actions. We characterized the management and design of no-take zone (NTZ) networks of eight Mexican Caribbean MPAs. To determine protection effectiveness, we followed a two-step approach. First, we evaluated the effect of the level of protection (NTZ, partial and unprotected areas), habitat structure and local human threats on four fish community metrics: total biomass, commercial fish biomass, mean trophic level and commercial fish mean size. If the protection afforded by the NTZ was significant, a second model was developed to evaluate design and management effectiveness. Total biomass, commercial fish biomass and mean trophic level were correlated significantly and positively with no-take protection; and, partially protected areas showed a significant and positive correlation with commercial fish biomass and mean trophic level. MPA age was the only significant and positive design and management characteristic that explained the variation in commercial fish biomass. This might be in part due to the suboptimal design of the MPA network that has mostly resulted from economic and social opportunities with little consideration for ecological guidelines and management capacities. Our findings suggest that to increase reef fish protection it would be necessary to include reef habitats with high coral cover and structural complexity inside NTZs. However, the effectiveness of an MPA network not only requires ecological considerations but also factors that include compliance, enforcement and true community participation to achieve greater benefits. Policymakers must ensure adequate design and management of MPAs in order to improve the effectiveness of marine resource protection, promoting both sustainable use and long-term biodiversity conservation.

Studies using paleoecological and historical data can inform coral reef management by providing accurate ecological baselines and by pinpointing the timing, magnitude, and drivers of ecosystem declines. However, these studies have rarely been incorporated into policy and management frameworks. This working group brings together paleontologists, historical ecologists, ecologists, fisheries scientists, and conservation practitioners to develop pathways for incorporating long-term ecological data into decision-making to advance the sustainable management of reef ecosystems. Our group is focusing on Caribbean coral reefs, a geography with an abundance of historical ecological data and a track record of collaboration between reef scientists and managers. This spirit of collaboration is enhanced by the immediacy of conservation needs for reef ecosystems in this region. We are focusing on the application of long-term data to two pressing management issues for Caribbean coral reefs, which together address the most urgent local human drivers of ecosystem change – fishing and land-based pollution. In this talk, I will outline our working group’s aims and progress to date.

Caribbean coral reef ecosystems have declined dramatically since systematic monitoring began in the 1970s. Over the past 50 years, they have lost between 50-80% of reef-building corals, their principal ecosystem architects. These declines have been attributed to climate change, introduction of invasive species, overfishing, and land-based pollution. Although recognized as a major stressor to corals, the role of land-based pollution in Caribbean coral declines has not been quantified due to the lack of consistent reef water quality monitoring. As part of our CPN-funded working group “Integrating paleo and historical data into coral reef management and policy”, we compiled several metrics of reef water quality from paleoecological data and disparate monitoring efforts across the Caribbean to document multidecadal-scale change over a period of intensifying coastal land alteration. We then compared water quality trends with trends in living coral cover from these same reefs to assess the role of water quality declines from land-based runoff on coral reef ecosystem health. These analyses show that (1) an array of historical data exist for reconstructing trends in Caribbean reef water quality that are in disparate repositories and remain mostly untapped, (2) reefs across the Caribbean have experienced water quality declines over the past half century, even offshore sites that were previously thought to be unaffected by land-based runoff, (3) correlations between reef water quality and coral abundance trends are detected at select sites where water quality monitoring protocols were consistent and sustained for multiple decades, and (4) water quality declines are asynchronous across sites and are likely related to differing timing and histories of land alteration.

Diseases are major drivers of the deterioration of coral reefs and are linked to major declines in coral abundance, reef functionality, and reef-related ecosystems services. An outbreak of a new disease is currently rampaging through the populations of the remaining reef-building corals across the Caribbean region. The outbreak was first reported in Florida in 2014 and reached the northern Mesoamerican Reef by summer 2018, where it spread across the ~450-km reef system in only a few months. Rapid spread was generalized across all sites and mortality rates ranged from 94% to 50%. This single event further modified the coral communities across the region by increasing the relative dominance of weedy corals and reducing reef functionality, both in terms of functional diversity and calcium carbonate production. This emergent disease is likely to become the most lethal disturbance ever recorded in the Caribbean, and it will likely result in the onset of a new functional regime where key reef-building and complex branching acroporids, an apparently unaffected genus that underwent severe population declines decades ago and retained low population levels, will once again become conspicuous structural features in reef systems with yet even lower levels of physical functionality.

Over the last four decades the Mexican Caribbean has experienced intensive coastal development, and change on the reef system condition has already been observed. This paper describes the reef system characteristics, at local and seascape scales, and discusses the current status and trends, considering the main research efforts from academia and Non-Governmental Organizations. To date, the coral cover of most reefs in the region is between 15 and 20%, following a slight recovery on mean coral cover over the last decade. During this same period, fleshy macroalgae and herbivorous fish biomass appear to have increased. At seascape scales, an increase of macroalgae and the loss of seagrass habitat have been observed. Considering that anthropogenic and environmental disturbances will most likely increase, the establishment of newly protected areas in the Mexican Caribbean is appropriate, but sufficient accompanying funding is required.

The development of coral reefs results from the interaction between ecological and geological processes in space and time. Their difference in scale, however, makes it difficult to detect the impact of ecological changes on geological reef development. The decline of coral cover over the last 50 years, for example, has dramatically impaired the function of ecological processes on reefs. Yet given the limited-resolution of their Holocene record, it is uncertain how this will impact accretion and structural integrity over longer timescales. In addition, reports of this ecological decline have focused on intrinsic parameters such as coral cover and colony size at the expense of extrinsic ones such as geomorphic and environmental variables. Despite these problems, several attempts have been made to predict the long-term accretion status of reefs based entirely on the contemporary health status of benthic communities. Here we explore how this ecological decline is represented within the reef geomorphic structure, which represents the long-term expression of reef development. Using a detailed geomorphic zonation scheme, we analyze the distribution and biodiversity of reef-building corals in fringing-reef systems of the Mesoamerican Reef tract. We find a depth-related pattern in community structure which shows that the relative species distribution between geomorphic zones is statistically different. Despite these differences, contemporary coral assemblages in all zones are dominated by the same group of pioneer generalist species. These findings imply that first, coral species distribution is still controlled by extrinsic processes that generate the geomorphic zonation; second, that coral biodiversity still reflects species zonation patterns reported by early studies; and third that dominance of pioneer species implies that modern coral assemblages are in a prolonged post-disturbance adjustment stage. In conclusion, any accurate assessment of the future viability of reefs requires a consideration of the geomorphic context or risks miscalculating the impact of ecological changes on long-term reef development.

In the Caribbean, disease outbreaks have emerged as significant drivers of coral mortality. Stony Coral Tissue Loss Disease (SCTLD) is a novel white plague-type disease that was first reported off the Florida coast in 2014. This disease affects >20 coral species and is spreading rapidly throughout the Caribbean. In December 2018, SCTLD reached southwestern (SW) Cozumel, one of the healthiest reef systems in the Caribbean. In this study, we integrate data from multiple survey protocols conducted between July 2018 and April 2020 to track the progression of the outbreak in SW Cozumel and to quantify the impacts of SCTLD on coral communities and the benthic composition of reefs. Given that the SCTLD outbreak coincided with a period of prolonged thermal stress that concluded in widespread coral bleaching in autumn 2019, we also investigated whether this event further exacerbated coral mortality. Our findings show that SCTLD spread throughout SW Cozumel in only 2 months and reached a peak after only 5 months. By the summer of 2019, most of the afflicted corals were already dead. Species of the families Meandrinidae, Faviinae, and Montastraeidae showed 33–95% mortality. The widespread coral die-off caused an overall loss of 46% in coral cover followed by a rapid increase of algae cover across all surveyed reefs that persisted until at least April 2020. In November 2019, more than 15% of surveyed coral colonies were bleached. However, we did not find that bleaching further increased coral mortality at either the colony or the community level, which suggests that the coral communities were able to recover from this event despite still being affected by the disease. In conclusion, SCTLD is radically changing the ecology of coral reefs by decimating the populations of several key reef-builders and reconfiguring the benthic assemblages. The actions needed to restore coral populations have to be accompanied by stringent controls related to the effects of climate change, coastal development, and wastewater treatment to improve coral conditions and ecosystem resilience.

The composition of modern carbonate sediments in nearshore tropical marine settings typically reflects a suite of somewhat proximal processes of carbonate production and erosion. Here, we document pelagic Sargassum as an emergent vector of carbonate sediment import to tropical Atlantic and Caribbean shorelines: a process with distal (oceanic) origins that has the potential to impart a distinct record of regional to global change within nearshore sediments. This process arose as recently as 2011, when a major new Sargassum bloom region emerged in the central Atlantic Ocean and resulted in Caribbean, West African, and northern Brazilian shorelines being inundated with Sargassum at unprecedented scales. Subsequent near annual recurrences of these coastal inundations at increasingly large scales suggest they are becoming an established norm. Socio-economic and ecological implications are widespread and potentially serious, and include potential impacts on the established sources and stability of nearshore carbonate sediments. This study, however, focuses on new sediment delivered to these coastal settings in the form of calcareous epiphytic communities that colonise Sargassum (i.e., bryozoans, serpulid worms, and red algae). Our analysis of Sargassum collected from coastal waters of the Mexican Caribbean in 2018 indicates a mean carbonate content of 2.09% wet weight at shoreline arrival. Based on data from 11 sites in Quintana Roo, Mexico (spanning 11.15 km of a 60 km section of shoreline), we further estimate the average drained weight of Sargassum that arrived at the coast during 2018 to have been 7.0x103 kg m-1 of shoreline. Together, these findings indicate that mean import of new carbonate sediment by Sargassum was 179 kg m-1 of shoreline in 2018, which is close to our upper estimate of annual proximal sediment production by Thalassia seagrass epiphytes (210 kg m-1 of shoreline). Prior to the onset of these massive Sargassum inundations, grains recognisable as bryozoan skeletons and serpulid tube casings were rare in coastal sediments of the Mexican Caribbean. Consequently, if these calcareous Sargassum epiphytes that are evidently now being imported in large volumes are retained and preserved, they can be expected to impart a distinct record within these coastal sediments. Although quantitative data on Sargassum inundations from other locations are sparse, numerous reports from the scientific community and the media suggest the scale of these events is comparable for many exposed tropical Caribbean and Atlantic shorelines. This represents the first documentation of pelagic Sargassum as a major vector of coastal sediment import, the significance of which has likely only arisen since the onset of large-scale inundations in 2011.

Mexico harbors several types of coastal ecosystems both in the Atlantic (Gulf of Mexico and Caribbean) and in the Pacific (tropical and subtropical) on which the regional and national socio-economic development depends. They have been studied through several modeling approaches for management, conservation, and necessary ecological studies. In this chapter, we review and synthesize the most recent and relevant studies conducted, with particular emphasis on coral reefs. In the Caribbean, coral reefs are likely the most rapidly changing ecosystems with a net decline in the cover of reef-building corals accompanied by rapid increases of fleshy macroalgae over the last decades. Remaining coral communities are changing toward weedy coral species that are unlikely to support reef growth and thus provide important services to other species and humans. Since 2015 the Mexican Caribbean coast experienced a massive influx of drifting Sargassum spp. that accumulated on the shores, resulting in a build-up of decaying beach-cast material and near-shore murky brown waters (Sargassum-brown-tides), drastically modifying near-shore waters conditions by reducing light, oxygen (hypoxia or anoxia), and pH. The Gulf of Mexico’s coastal ecosystems have also been under significant threats because of human activities, such as gas and oil extraction, pollution, and fishing. Despite numerous studies conducted in the Pacific, biodiversity knowledge is still incomplete, highly biased toward specific habitats, and often narrow in taxonomic and spatial scope. Concurrently, ecological processes that drive biodiversity have been scarcely disentangled. In spite of sub-optimal conditions for coral calcification (lower alkalinity, upwelling, ENSO, high nutrients concentration) some coral reefs thrive in the Pacific. Calcification rate is disrupted with ENSO events (20–50% drop), but it is not correlated to historical changes in sea surface temperature and it might decrease between 15 and 22% due to ocean acidification.

Since late 2014, the Mexican Caribbean coast has periodically received massive, atypical influxes of pelagic Sargassum spp. (sargasso). Negative impacts associated with these influxes include mortality of nearshore benthic flora and fauna, beach erosion, pollution, decreasing tourism and high management costs. To understand the dynamics of the sargasso influx, we used Landsat 8 imagery (from 2016 to mid-2020) to record the coverage of sargasso in the sea off the Mexican Caribbean coastline, with a maximum reported in September 2018. Satellite image analysis also showed local differences in the quantity of beached sargasso along the coastline. Over the years, good practice for collection on the beach and for off-shore collection of sargasso have been established through trial and error, and the Mexican Government and hotel industry have spent millions of dollars on removal and off-shore detention of sargasso. Notwithstanding, sargasso also has various properties that could be harnessed in local industries. The stimulation of local industrial growth would offer alternatives to the dependence on tourism, as a circular economy, based on sargasso, is developed.

Ecological processes on coral reefs commonly have limited spatial and temporal scales and may not be recorded in their long-term geological history. The widespread degradation of Caribbean coral reefs over the last 40 years therefore provides an opportunity to assess the impact of more significant ecological changes on the geological and geomorphic structure of reefs. Here, we document the changing ecology of communities in a coral reef seascape within the context of its geomorphic zonation. By comparing basic ecological indices between historical and modern data we show that in 35 years the reef-front zone was transformed from a complex coral assemblage with a three-dimensional structure, to a size-homogenized and flattened one that is quasi indistinguishable from the adjacent non-accretional coral-ground zone. Today coral assemblages at Punta Maroma are characterized by the dominance of opportunistic species which are either tolerant to adverse environmental conditions, including sedimentation, or are known to be the first scleractinian species to recruit on disturbed reefs, implying they reflect a post-hurricane stage of adjustment. Despite an increase in similarity in ecological indices, the reef-front and coral-ground geomorphic zones still retain significant differences in coral assemblages and benthic habitat and are not homogeneous. The partial convergence of coral assemblages certainly has important consequences for the ecology and geological viability of the reef and its role in coastal protection, but environmental physical drivers continue to exert a fundamental role in the character and zonation of benthic communities of this reef seascape.

The ecology and structure of many tropical coral reefs have been markedly altered over the past few decades. Although long-term recovery has been observed in terms of coral cover, it is not clear how novel species configurations shape reef functionality in impaired reefs. The identities and life-history strategies of the corals species that recover are essential for understanding reef functional dynamics. We used a species identity approach to quantify the physical functionality outcomes over a 13 year period across 56 sites in the Mexican Caribbean. This region was affected by multiple stressors that converged and drastically damaged reefs in the early 2000s. Since then, the reefs have shown evidence of a modest recovery of coral cover. We used Bayesian linear models and annual rates of change to estimate temporal changes in physical functionality and coral cover. Moreover, a functional diversity framework was used to explore changes in coral composition and the traits of those assemblages. Between 2005 and 2018, physical functionality increased at a markedly lower rate compared to that of coral cover. The disparity between recovery rates depended on the identity of the species that increased (mainly non-framework and foliose-digitate corals). No changes in species dominance or functional trait composition were observed, whereas non-framework building corals consistently dominated most reefs. Although the observed recovery of coral cover and functional potential may provide some ecological benefits, the long-term effects on reef frameworks remain unclear, as changes in the cover of key reef-building species were not observed. Our findings are likely to be representative of many reefs across the wider Caribbean basin, as declines in coral cover and rapid increases in the relative abundance of weedy corals have been reported regionally. A coral identity approach to assess species turnover is needed to understand and quantify changes in the functionality of coral reefs.

Species morpho-functional traits provide general and predictable rules to understand the dynamics of ecological communities; therefore, considering species identity is crucial in understanding ecosystem functioning. Here, we propose a framework to estimate the species-specific functional contribution of Caribbean corals according to their capacity to create complex three-dimensional structures by means of calcium carbonate precipitation and their morphological complexity. We use a combination of field data and bibliographic information to integrate a Reef Functional Index (RFI) that considers the calcification rate, structural complexity and abundance (cover) of each coral species. As an example application of this tool, we evaluated various sites along the Mesoamerican Reef showing that the RFI can be used to compare reef sites or communities. The construction capacities of Caribbean coral species are highly variable, thus, different species configurations of a coral community result in a high level of functional variation. Most coral assemblages on the Mesoamerican Reef show non-framework species dominance (e.g. Undaria spp. and Porites astreoides), compromising reef functioning. However, sites with key reef-building species present showed considerably greater functioning despite those species not being dominant. The functional approximation for coral species proposed can be used by future studies considering changes in coral community composition, keystone species loss or to estimate reef function loss due to climate change or other stressors.

The peculiar shallow-water reefs of the Tropical Southwestern Atlantic Ocean have thrived in conditions considered suboptimal (e.g., moderate turbidity, higher level of nutrients, and resuspension of sediments) under the optics of classical coral reefs. Recently, these marginal reefs have been hypothesized to provide climate-change refugia from natural and anthropogenic impacts; yet with little empirical evidence. Therefore, in this article we discuss the known effects of multiple pressures on the Brazilian reefs. A wide evaluation of the peer reviewed literature reported that bleaching events affected 26 species of scleractinians, hydrocorals, octocorals, and zoanthids in turbid-zone reefs over the last 26 years (1994–2020) in the Tropical SW Atlantic Brazil. Between 1994 and 2018 no species suffered post-bleaching mass mortality. However, the recent and intense heatwaves of 2019 and 2020 caused higher mortality rates in several key foundation corals (e.g., Millepora alcicornis, Millepora braziliensis, and Mussismilia harttii) showing that the SW Atlantic reefs are not long-term protected and universal refuges. Moreover, other direct and indirect human pressures threaten these tropical reefs. Local and regional (e.g., pollution and fisheries) and large-scale pressures (e.g., global warming and marine heatwaves) act simultaneously on the health of these reefs, which intensifies negative species-specific impacts. We outline the occurrence of pressures that have been important factors responsible for the reduction in species richness and reef fish biomass, changing geo-ecological functions, altered reef composition and dominant morpho-functional groups, as well as phase shifts. Along with large-scale climatic changes, such as heatwaves, fisheries, urbanization, mining disasters, oil spills, increased sedimentation, increased warming, marine debris, contamination by domestic, agricultural, and industrial effluents, and introduction of invasive species are likely the most severe pressures on Brazilian reefs. We discuss that the “Brazilian reef refuge hypothesis” could be partially applied for some stress-tolerant massive corals during acute disturbances (short-term refuge); yet should not be assumed as a reef ecosystem-wide feature under ongoing environmental change. Therefore, we argue that it is essential to alleviate the main local and regional human impacts and to adopt resilient-based management strategies at local and global scales to protect the low-functional redundancy and higher endemism of these unique marginal coral reefs.

Caribbean reef corals have experienced unprecedented declines from climate change, anthropogenic stressors and infectious diseases in recent decades. Since 2014 a highly lethal, new disease, called stony coral tissue loss disease (SCTLD), has impacted many species in Florida. During the summer of 2018 we noticed an anomalously high disease prevalence affecting different coral species in the northern portion of the Mexican Caribbean. We assessed the severity of this outbreak in 2018/2019 using the AGRRA coral protocol to survey 82 reef sites across the Mexican Caribbean. Then, using a subset of 14 sites we detailed information from before the outbreak (2016/2017) to explore the consequences of the disease on the condition and composition of coral communities. Our findings show that the disease outbreak has already spread across the entire region, affecting similar species (with similar disease patterns) to those previously described for Florida. However, we observed a great variability in prevalence and tissue mortality that was not attributable to any geographical gradient. Using long-term data, we determined that there is no evidence of such high coral disease prevalence anywhere in the region before 2018, which suggests that the entire Mexican Caribbean (~450 km) was afflicted by the disease within a few months. The analysis of sites that contained pre-outbreak information showed that this event considerably increased coral mortality and severely changed the structure of coral communities in the region. Given the high prevalence and lethality of this disease, and the high number of susceptible species, we encourage reef researchers, managers and stakeholders across the Western Atlantic to accord it the highest priority for the near future.

Caribbean coral reefs are undergoing massive degradation, with local increases of macroalgae and reduction of architectural complexity associated with loss of reef-building corals. We explored whether reef degradation affects the feeding ecology of two co-occurring spiny lobsters: Panulirus guttatus, which is an obligate reef-dweller, and Panulirus argus, which uses various benthic habitats including coral reefs. We collected lobsters of both species from the back-reef zones of two large reefs similar in length (~1.5 km) but differing widely in level of degradation, at the Puerto Morelos Reef National Park (Mexico). We measured the carapace length (CL) and weight (W) of lobsters, estimated three condition indices (hepatosomatic index, HI; blood refractive index, BRI; and W/CL ratio), and analyzed their stomach contents and stable isotope values (15N and 13C). All lobsters tested negative for the presence of the virus PaV1, which can affect nutritional condition. Stomach contents yielded 72 animal taxa, mainly mollusks and crustaceans, with an average of 35 taxa per species per reef, but with much overlap. In P. guttatus, CL, HI, BRI, and W/CL did not vary with reef, but mean isotopic values did. The isotopic niche of P. guttatus showed little overlap between reefs, reflecting differences in local carbon sources and underlining the habitat specialization of P. guttatus, which exhibited a higher trophic position on the more degraded reef. Overall, the trophic position of P. guttatus was higher than that of P. argus. In P. argus, none of the variables differed between reefs and the isotopic niche was wide and with great overlap between reefs, reflecting the broader foraging ranges of P. argus compared to P. guttatus. Additional isotopic values from 16 P. argus caught at a depth of 25 m in the fore reef suggest that these larger lobsters forage over different habitats and have a higher trophic position than their smaller conspecifics and congeners from the back reef. The feeding ecology of P. argus appears to be less influenced by coral reef degradation than that of P. guttatus, but our results suggest a buffering effect of omnivory against habitat degradation for both lobster species.

The Mexican Caribbean, located in the state of Quintana Roo, is a highly dynamic region characterized by an expanse of mangrove forests, seagrass beds, and coral reefs, under high pressure from activities related to intensive tourism. Tourism development in the region started in the early 1970s, as the government promoted the construction of Cancun, one of five Integrally Planned Centers across the country established for economic growth. Therefore, in a few decades, the region transformed from small-populated areas, with fishing villages scattered along the coast, to a region that produces 1.6% of the country’s gross domestic input and houses nearly 100,000 hotel rooms. This, coupled to a lack of effective coastal management strategies, their enforcement, and environmental variation, has considerably increased the pressure on coastal and marine ecosystems, so that changes to their condition have already been observed.

Despite coral community collapse, the mustard hill coral (Porites astreoides) is a species currently experiencing success throughout the Caribbean. The inshore reefs of Grenada were selected to study the influence of benthic factors on the abundance, size, and coverage of P. astreoides colonies. Surveys of reef communities along established 30 m transects were conducted at eight sites in 2014 and 2017 using a 0.5 m² quadrat. Coral Point Count was used to annotate the images, estimating the coverage of scleractinian corals, sponges, algae, and benthic substrates. Coverage, size, and abundance of P. astreoides colonies were quantified using the area measurement tool in ImageJ standardized against the quadrats. There were significant differences in benthic community assemblages between islands, selected sites, and between years. From 2014 to 2017 there was a significant decrease in the mean abundance of P. astreoides colonies and significant increases in mean colony size and coverage. The presence of P. astreoides colonies was significantly correlated with: rubble (−), sand (−), pavement (+), macroalgae (−), coralline algae (+), sponges (varying response), gorgonians (−), massive corals (+), and branching corals (−). P. astreoides follows similar recruitment patterns as other scleractinian corals. Observed changes in P. astreoides populations appear to indicate a recovery event following a disturbance, potentially tropical storm Chantal in 2013.

Since 2011, pelagic Sargassum has inundated Caribbean, West African, and northern Brazilian shorelines in increasing volumes. These events are linked to the emergence of a major new Sargassum bloom region in the Atlantic Ocean, and annual high-volume Sargassum beachings are seemingly becoming an established norm. Resultant socio-economic and ecological implications are widespread and potentially serious, but an important question that has so far received no attention is whether these Sargassum inundations might represent a new source of carbonate sediment in affected coastal areas. This sediment derives from calcareous epiphyte communities that colonise Sargassum (e.g., bryozoans, serpulid worms, and red algae), and if volumetrically significant, may help to counteract aspects of Sargassum beachings thought to reduce sediment supply and decrease coastal stability. Here we determine the carbonate contents of Sargassum from coastal waters of the Mexican Caribbean. Integrating these with volumetric data on beached Sargassum, we then estimate total epiphytic carbonate import during 2018 at 11 sites along a 60 km section of the Quintana Roo coast, Mexico. Based on measured mean carbonate content of Sargassum (2.09% wet weight; 95% confidence interval [CI]: 1.83–2.32), and estimates of annual beached Sargassum (7.0 × 103 kg drained weight·m−1 of shoreline; 95% CI: 6.9–7.2), our findings indicate that Sargassum beachings in the Mexican Caribbean contributed an average of 179 kg CaCO3·m−1 of shoreline (95% CI: 173–185) in 2018: close to our upper estimate of seagrass epiphyte contributions (210 kg·m−1). Although quantitative data on Sargassum beachings from other locations are sparse, numerous media reports suggest the scale of these events is comparable for many exposed tropical Caribbean and Atlantic shorelines. This represents the first documentation of pelagic Sargassum as a major vector of coastal sediment import, the significance of which has likely only arisen since the onset of large-scale inundations in 2011.

Coral reefs are considered to be valuable ecosystems due to the goods and services that they provide. However, these ecosystem services are highly dependent on the physical structure of the reef, which in turn depends on the species composition of hermatypic corals. In this study, we explored the functional potential of reefs with a new index that takes into account coral cover, the calcification rate, rugosity, and the height of each species. In June 2019, we surveyed 11 reefs from the southern Mexican Pacific (15°40′N, 96°29′W−15°45′N, 96°5′W) to estimate coral cover and collect quantitative morphometric data of ~15 haphazardly selected coral colonies per site (N = 102). We estimated the calcification rates and structural complexity of the species present and then calculated the Reef Functional Index (RFI), which estimates the species-specific functional contribution of the corals in reef systems by integrating their capacity to create complex three-dimensional structures through calcium carbonate precipitation with morphological complexity. We modelled the effects of shifting species compositions through a permutation approach with 6435 possible combinations. We found a mean coral cover of 48.5 ± 18.09% (±SD) dominated by Pocillopora damicornis, Pocillopora verrucosa, and Pocillopora capitata and low abundance of Porites panamensis and Pavona gigantea. The mean RFI was 0.71 ± 0.1. The permutation model showed that the RFI was very close to its maximum potential (96%) when the relative abundance of pocilloporids was ≥60% and decreased as the relative abundance of massive corals increased. At maximum evenness, the RFI value was at 92% of its maximum potential. Our data highlight the importance of pocilloporids to the functioning of reefs in the Eastern Tropical Pacific (ETP) and confirm that P. damicornis is the primary reef builder in the region. Nevertheless, our findings also highlight the vulnerability of these reefs given that branching corals are more susceptible to environmental disturbance than slow-growing massive corals. In a rapidly changing environment, the future of ETP reefs depends not only on the survival of pocilloporids but also on the ability of coral reefs to withstand highly variable oceanographic conditions as complete ecosystems.

Since 2011, unusually large quantities of pelagic Sargassum fluitans and S. natans (sargasso) have been washing ashore along the coasts of some African countries and the Greater Caribbean, impacting ecosystems and economies. We estimated biomass and composition of sargasso arriving to a Mexican Caribbean coast from September 2016 until May 2020. In 2016, the beached masses comprised S. natans VIII and S. fluitans III. S. fluitans III was the predominant form throughout the study period, comprising on average >60 % of total wet biomass. The relative abundance of S. natans VIII decreased in time from 2016 to 2019 (41 to 3 %), although it became prevalent again in the first months of 2020. The third morphological form, S. natans I, was not registered until February 2018, and its relative abundance increased from 23 % in 2018 to 31 % in 2019. The initial composition of Sargassum species and morphotypes of the beached sargasso in Mexico differed from that commonly reported in the Sargasso Sea. The total biomass of beached sargasso varied considerably among years and seasons, with peaks during the summer months of 2018 and 2019. Seasonal variations in biomass were explained by 1) presence of sargasso in the Yucatan Current and 2) prevailing trade winds. This study is the first report on biomass and species composition of beached sargasso in the Western Caribbean and may help to understand patterns of the massive influxes; which will aid in the management of this new phenomenon.

Marine protected areas have been established as essential components for managing and protecting coral reefs to mitigate natural and anthropogenic stressors. One noteworthy example within the Mexican Caribbean is the Arrecife de Puerto Morelos National Park (APMNP), where several studies on the coral communities have been carried out since 2006. In June 2019, we conducted a study in eight sites of the APMNP applying a coral reef assessment method based on biological indicators of both the benthos and the fish communities. In this paper, we present the quantitative results of our study and provide a qualitative criterion assessing seven condition indexes through a scoring system. We also present a statistical comparison with a previous study carried out in 2016. The general status of coral reefs was classified as regular due to the low values of coral recruitment rate and biomass of key commercial fish species. However, living coral cover average was above 20%, with a slight dominance of framework building coral species and the presence of low values of fleshy algae cover, these being positive indicators. Our study found a higher proportion of reef promoter elements and a lower proportion of detractors, compared to a previous study carried out in 2016.

The carbonate budget of a reef describes the net rate of carbonate production resulting from various biologically-, physically- and chemically-driven production and erosion processes. Thus, budget state metrics can provide important information on a reef’s growth potential and on the capacity of reefs to sustain key geo-ecological services such as habitat provision and coastal protection. Whilst various approaches for estimating carbonate budgets exist, census-based methods have gained recent interest because they quantify the contribution of different functional groups and taxa, and allow assessments of the links between changing reef ecology and budget states. However, the present paucity of supporting data on growth and erosion rates for the majority of coral species and reef-associated taxa represents a constraint on these budget estimates and limits meaningful between-site comparisons. In light of the growing interest in using carbonate budgets as a functional reef “health” assessment tool, this review thus considers our current state of knowledge regarding the geographic coverage of existing reef budget states and the availability of relevant supporting data. We use this to highlight current knowledge gaps, future challenges, and opportunities that emerging techniques may offer. The primary aim of this review is to encourage increased research efforts on budget states and underlying metrics in order to better constrain reef carbonate budget estimates from across a broad range of sites and environments.

Habitat degradation can affect trophic ecology by differentially affecting specialist and generalist species, and the number and type of interspecific relationships. However, the effects of habitat degradation on the trophic ecology of coral reefs have received limited attention. We compared the trophic structure and food chain length between two shallow Caribbean coral reefs similar in size and close to each other: one dominated by live coral and the other by macroalgae (i.e., degraded). We subjected samples of basal carbon sources (particulate organic matter and algae) and the same 48 species of consumers (invertebrates and fishes) from both reefs to stable isotope analyses, and determined the trophic position of consumers and relative importance of various carbon sources for herbivores, omnivores, and carnivores. We found that both reefs had similar food chain length and trophic structure, but different trophic pathways. On the coral-dominated reef, turf algae and epiphytes were the most important carbon source for all consumer categories, whereas on the degraded reef, particulate organic matter was a major carbon source for carnivores. Our results suggest that the trophic structure of the communities associated with these reefs is robust enough to adjust to conditions of degradation.

Coral reefs sustain abundant and diverse macrocrustaceans that perform multiple ecological roles, but coral reefs are undergoing massive degradation that may be driving changes in the species composition and abundance of reef-associated macrocrustaceans. To provide insight into this issue, we used non-destructive visual census techniques to compare the diversity and abundance of conspicuous macrocrustaceans (i.e., those >1 cm and visible without disturbance) between two shallow Caribbean coral reefs similar in size (∼1.5 km in length) and close to each other, but one (“Limones”) characterized by extensive stands of the branching coral Acropora palmata, and the other (“Bonanza”) dominated by macroalgae and relic coral skeletons and rubble (i.e., degraded). We also assessed the structural complexity of each reef and the percent cover of various benthic community components. Given the type of growth of A. palmata, we expected to find a greater structural complexity, a higher cover of live coral, and a lower cover of macroalgae on Limones, and hence a more diverse and abundant macrocrustacean community on this reef compared with Bonanza. Overall, we identified 63 macrocrustacean species (61 Decapoda and two Stomatopoda). Contrary to our expectations, structural complexity did not differ significantly between the back-reef zones of these reefs but varied more broadly on Limones, and the diversity and abundance of macrocrustaceans were higher on Bonanza than on Limones despite live coral cover being higher on Limones and macroalgal cover higher on Bonanza. However, the use of various types of microhabitats by macrocrustaceans differed substantially between reefs. On both reefs, the dominant species were the clinging crab Mithraculus coryphe and the hermit crab Calcinus tibicen, but the former was more abundant on Bonanza and the latter on Limones. M. coryphe occupied a diverse array of microhabitats but mostly coral rubble and relic skeletons, whereas C. tibicen was often, but not always, found associated with colonies of Millepora spp. A small commensal crab of A. palmata, Domecia acanthophora, was far more abundant on Limones, emerging as the main discriminant species between reefs. Our results suggest that local diversity and abundance of reef-associated macrocrustaceans are partially modulated by habitat degradation, the diversity of microhabitat types, and the establishment of different commensal associations rather than by structural complexity alone.

Sea-level rise (SLR) is predicted to elevate water depths above coral reefs and to increase coastal wave exposure as ecological degradation limits vertical reef growth, but projections lack data on interactions between local rates of reef growth and sea level rise. Here we calculate the vertical growth potential of more than 200 tropical western Atlantic and Indian Ocean reefs, and compare these against recent and projected rates of SLR under different Representative Concentration Pathway (RCP) scenarios. Although many reefs retain accretion rates close to recent SLR trends, few will have the capacity to track SLR projections under RCP4.5 scenarios without sustained ecological recovery, and under RCP8.5 scenarios most reefs are predicted to experience mean water depth increases of more than 0.5 m by 2100. Coral cover strongly predicts reef capacity to track SLR, but threshold cover levels that will be necessary to prevent submergence are well above those observed on most reefs. Urgent action is thus needed to mitigate climate, sea-level and future ecological changes in order to limit the magnitude of future reef submergence.