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2. EPI-Net One Health reporting guideline for antimicrobial consumption and resistance surveillance data: a Delphi approach

Author

Adegnika, Ayola Akim, Avery, Lisa, Bonten, Marc, Cassini, Alessandro, Chauvin, Claire, Compri, Monica, Damborg, Peter, De Greeff, Sabine, Del Toro, Maria Dolores, Filter, Matthias, Franklin, Alison, Gonzalez-Zorn, Bruno, Grave, Kari, Hocquet, Didier, Hoelzle, Ludwig E., Kalanxhi, Erta, Laxminarayan, Ramanan, Leibovici, Leonard, Malhotra-Kumar, Surbhi, Mendelson, Marc, Paul, Mical, Muñoz Madero, Cristina, Murri, Rita, Piddock, Laura J.V., Ruesen, Carolien, Sanguinetti, Maurizio, Schilling, Thorben, Schrijver, Remco, Schwaber, Mitchell J., Scudeller, Luigia, Torumkuney, Didem, Van Boeckel, Thomas, Vanderhaeghen, Wannes, Voss, Andreas, Wozniak, Teresa, Babu Rajendran, Nithya, Arieti, Fabiana, Mena-Benítez, Carla Alejandra, Galia, Liliana, Tebon, Maela, Alvarez, Julio, Gladstone, Beryl Primrose, Collineau, Lucie, De Angelis, Giulia, Duro, Raquel, Gaze, William, Göpel, Siri, Kanj, Souha S., Käsbohrer, Annemarie, Limmathurotsakul, Direk, Lopez de Abechuco, Estibaliz, Mazzolini, Elena, Mutters, Nico T., Pezzani, Maria Diletta, Presterl, Elisabeth, Renk, Hanna, Rodríguez-Baño, Jesús, Săndulescu, Oana, Scali, Federico, Skov, Robert, Velavan, Thirumalaisamy P., Vuong, Cuong, and Tacconelli, Evelina

Published
2023
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3. Capacity-building during public health emergencies: perceived usefulness and cost savings of an online training on SARS-CoV-2 real-time polymerase chain reaction (qPCR) diagnostics in low- and middle-income settings during the COVID-19 pandemic

Author

Weishaar, Heide, primary, Pozo-Martin, Francisco, additional, Geurts, Brogan, additional, Lopez de Abechuco, Estibaliz, additional, Montt-Maray, Eloisa, additional, Cristea, Florin, additional, Abrokwa, Seth Kofi, additional, Bahr, Thurid, additional, Al-Awlaqi, Sameh, additional, and El Bcheraoui, Charbel, additional

Published
2024
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6. EPI-Net One Health reporting guideline for antimicrobial consumption and resistance surveillance data: a Delphi approach

Author

European Commission, European Federation of Pharmaceutical Industries and Associations, Babu Rajendran, Nithya, Arieti, Fabiana, Mena-Benítez, Carla Alejandra, Galia, Liliana, Tebon, Maela, Alvarez, Julio, Gladstone, Beryl Primrose, Collineau, Lucie, De Angelis, Giulia, Duro, Raquel, Gaze, William, Göpel, Siri, Kanj, Souha S., Käsbohrer, Annemarie, Limmathurotsakul, Direk, Lopez de Abechuco, Estibaliz, Mazzolini, Elena, Mutters, Nico T., Pezzani, Maria Diletta, Presterl, Elisabeth, Renk, Hanna, Rodríguez-Baño, Jesús, Săndulescu, Oana, Scali, Federico, Skov, Robert, Velavan, Thirumalaisamy P., Vuong, Cuong, Tacconelli, Evelina, European Commission, European Federation of Pharmaceutical Industries and Associations, Babu Rajendran, Nithya, Arieti, Fabiana, Mena-Benítez, Carla Alejandra, Galia, Liliana, Tebon, Maela, Alvarez, Julio, Gladstone, Beryl Primrose, Collineau, Lucie, De Angelis, Giulia, Duro, Raquel, Gaze, William, Göpel, Siri, Kanj, Souha S., Käsbohrer, Annemarie, Limmathurotsakul, Direk, Lopez de Abechuco, Estibaliz, Mazzolini, Elena, Mutters, Nico T., Pezzani, Maria Diletta, Presterl, Elisabeth, Renk, Hanna, Rodríguez-Baño, Jesús, Săndulescu, Oana, Scali, Federico, Skov, Robert, Velavan, Thirumalaisamy P., Vuong, Cuong, and Tacconelli, Evelina

Abstract

Strategic and standardised approaches to analysis and reporting of surveillance data are essential to inform antimicrobial resistance (AMR) mitigation measures, including antibiotic policies. Targeted guidance on linking full-scale AMR and antimicrobial consumption (AMC)/antimicrobial residues (AR) surveillance data from the human, animal, and environmental sectors is currently needed. This paper describes the initiative whereby a multidisciplinary panel of experts (56 from 20 countries-52 high income, 4 upper middle or lower income), representing all three sectors, elaborated proposals for structuring and reporting full-scale AMR and AMC/AR surveillance data across the three sectors. An evidence-supported, modified Delphi approach was adopted to reach consensus among the experts for dissemination frequency, language, and overall structure of reporting; core elements and metrics for AMC/AR data; core elements and metrics for AMR data. The recommendations can support multisectoral national and regional plans on antimicrobials policy to reduce resistance rates applying a One Health approach.

Published
2023

7. EPI-Net One Health reporting guideline for antimicrobial consumption and resistance surveillance data: a Delphi approach

Author

Babu Rajendran, Nithya, primary, Arieti, Fabiana, additional, Mena-Benítez, Carla Alejandra, additional, Galia, Liliana, additional, Tebon, Maela, additional, Alvarez, Julio, additional, Gladstone, Beryl Primrose, additional, Collineau, Lucie, additional, De Angelis, Giulia, additional, Duro, Raquel, additional, Gaze, William, additional, Göpel, Siri, additional, Kanj, Souha S., additional, Käsbohrer, Annemarie, additional, Limmathurotsakul, Direk, additional, Lopez de Abechuco, Estibaliz, additional, Mazzolini, Elena, additional, Mutters, Nico T., additional, Pezzani, Maria Diletta, additional, Presterl, Elisabeth, additional, Renk, Hanna, additional, Rodríguez-Baño, Jesús, additional, Săndulescu, Oana, additional, Scali, Federico, additional, Skov, Robert, additional, Velavan, Thirumalaisamy P., additional, Vuong, Cuong, additional, Tacconelli, Evelina, additional, Adegnika, Ayola Akim, additional, Avery, Lisa, additional, Bonten, Marc, additional, Cassini, Alessandro, additional, Chauvin, Claire, additional, Compri, Monica, additional, Damborg, Peter, additional, De Greeff, Sabine, additional, Del Toro, Maria Dolores, additional, Filter, Matthias, additional, Franklin, Alison, additional, Gonzalez-Zorn, Bruno, additional, Grave, Kari, additional, Hocquet, Didier, additional, Hoelzle, Ludwig E., additional, Kalanxhi, Erta, additional, Laxminarayan, Ramanan, additional, Leibovici, Leonard, additional, Malhotra-Kumar, Surbhi, additional, Mendelson, Marc, additional, Paul, Mical, additional, Muñoz Madero, Cristina, additional, Murri, Rita, additional, Piddock, Laura J.V., additional, Ruesen, Carolien, additional, Sanguinetti, Maurizio, additional, Schilling, Thorben, additional, Schrijver, Remco, additional, Schwaber, Mitchell J., additional, Scudeller, Luigia, additional, Torumkuney, Didem, additional, Van Boeckel, Thomas, additional, Vanderhaeghen, Wannes, additional, Voss, Andreas, additional, and Wozniak, Teresa, additional

Published
2022
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9. Deliverable D-JIP-MATRIX-WP5.1 - Report on requirement analysis for 'OHS roadmap template'

Author

Eves, Caroline, Friesema, Ingrid, Skjerdal, Olaug Taran, Holmberg, Mia, Ågren, Estelle, Lopez de Abechuco, Estibaliz, Daugaard Larsen, Helle, Kjær Lefèvre, Stine, and Benedetti, Guido

Subjects
Foodborne pathogens, Facilitators, Roadmap, Cross-disciplinary, Emerging threats, One Health Surveillance, Multi-sectorial, One Health, Barriers, Systematic Literature Review
Abstract

OHEJP JIP MATRIX

Published
2022
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10. One Health Consensus Report Annotation Checklist (OH-CRAC):A cross-sector checklist to support harmonized annotation of surveillance data in reports

Author

Lopez de Abechuco, Estibaliz, Dórea, Fernanda, Buschhardt, Tasja, Scaccia, Nazareno, Günther, Taras, Foddai, Alessandro, Dups-Bergmann, Johanna, Filter, Matthias, Lopez de Abechuco, Estibaliz, Dórea, Fernanda, Buschhardt, Tasja, Scaccia, Nazareno, Günther, Taras, Foddai, Alessandro, Dups-Bergmann, Johanna, and Filter, Matthias

Abstract

To facilitate cross-sector integration of surveillance data it is necessary to improve and harmonize the meta-information provided in surveillance data reports. Cross-sector integration of surveillance results in sector-specific reports is frequently difficult as reports with a focus on a single sector often lack aspects of the relevant meta-information necessary to clarify the surveillance context. Such reporting deficiencies reduce the value of surveillance reports to the One Health community. The One Health Consensus Report Annotation Checklist (OH-CRAC), described in this paper along with potential application scenarios, was developed to improve the current practice of annotating data presented in surveillance data reports. It aims to provide guidance to researchers and reporting officers on what meta-information should be collected and provided to improve the completeness and transparency of surveillance data reports. The OH-CRAC can be adopted by all One Health-related sectors and due to its cross-sector design, it supports the mutual mapping of surveillance meta-information from sector-specific surveillance reports on federal, national and international levels. To facilitate the checklist completion, OH-CRAC is also available as an online resource that allows the collection of surveillance meta-information in an easy and user-friendly manner. Completed OH-CRAC checklists can be attached as annexes to the corresponding surveillance data reports or even to individual data files regardless of the data source. In this way, reports and data become better interpretable, usable and comparable to information from other sectors, improving their value for all surveillance actors and providing a better foundation for advice to risk managers.

Published
2022

12. The Glossaryfication Web Service: an automated glossary creation tool to support the One Health community

Author

Scaccia, Nazareno, Günther, Taras, Lopez de Abechuco, Estibaliz, and Filter, Matthias

Subjects
Glossary, Computer science, Science, KNIME, glossary creation, General Medicine, computer.software_genre, World Wide Web, OHEJP Glossary, ORION, One Health, Text processing, text processing, Web service, computer, GeneralLiterature_REFERENCE(e.g.,dictionaries,encyclopedias,glossaries)
Abstract

In many interdisciplinary research domains, the creation of a shared understanding of relevant terms is considered the foundation for efficient cross-sector communication and interpretation of data and information. This is also true for the domain of One Health (OH)where many One Health Surveillance (OHS) documents rarely contain glossaries with a list of terms for which their specific meaning in the context of the given document is defined Cornelia et al. 2018, Buschhardt et al. 2021. The absence of glossaries within these documents may lead to misinterpretation of surveillance results due to the wrong interpretation of terminology specifically when term definitions differ across OH sectors. Under the One Health EJP project ORION, the OHEJP Glossary was recently created. The OHEJP Glossary is a tool to improve communication and collaboration among OH sectors by providing an easy-to-use online resource that lists relevant OH terms and sector-specific definitions. To improve the accessibility of content from the OHEJP Glossary and support the creation of integrative glossaries in future OHS-related documents, the OHEJP Glossaryfication Web Service was created. This service can support the practical use of the OHEJP Glossary and other relevant online glossaries by OH professionals. The Glossaryfication Web Service (GWS) is an application that automatically identifies terms in any uploaded text-based document and creates a document-specific list of matching definitions in selected online glossaries. This auto-generated document-specific glossary can easily be adjusted by the user, e.g. by selecting the desired definition in case multiple definitions were found for a specific term. The document-specific glossary could then be downloaded, manually adjusted, and finally included into the original document where it supports the correct interpretation of terminology used within the document. Especially in sector-specific reports such as from animal health or public health authorities, this can be beneficial to ensure the correct interpretation by other OH sectors in the future. The GWS developed with the open-source desktop software KNIME Analytics Platform and runs as a web service on a KNIME Web Server infrastructure. The core data processing functionality in the GWS is based on KNIME’s Textprocessing extension. KNIME's JavaScript nodes provided the basis for an interactive user interface where userscan easily upload their files and select between different reference glossaries such as the OHEJP Glossary, the CDC Glossary, the WHO Glossary,or the EFSA Glossary. After retrieval of the user input settings, the GWS tags words within the provided document and maps these tagged words with matching entries in the selected glossaries. As the main output, the user receives a downloadable list of matching terms with their corresponding definitions, sectorial assignments, and references, which can then be added by the user to the original document.The GWS is freely accessible via this link as well as the underlying KNIME workflow.

Published
2021

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