32 results on '"Logan KA"'
Search Results
2. Influenza A virus diffusion through mucus gel networks
- Author
-
Logan Kaler, Ethan Iverson, Shahed Bader, Daniel Song, Margaret A. Scull, and Gregg A. Duncan
- Subjects
Biology (General) ,QH301-705.5 - Abstract
Influenza A virus movement in mucus is found to be affected by the mesh structure of the gel network and further analysis reveals weak IAV-mucus binding.
- Published
- 2022
- Full Text
- View/download PDF
3. Machine learning-informed predictions of nanoparticle mobility and fate in the mucus barrier
- Author
-
Logan Kaler, Katherine Joyner, and Gregg A. Duncan
- Subjects
Biotechnology ,TP248.13-248.65 ,Medical technology ,R855-855.5 - Abstract
Nanomaterial diffusion through mucus is important to basic and applied areas of research such as drug delivery. However, it is often challenging to interpret nanoparticle dynamics within the mucus gel due to its heterogeneous microstructure and biochemistry. In this study, we measured the diffusion of polyethylene glycolylated nanoparticles (NPs) in human airway mucus ex vivo using multiple particle tracking and utilized machine learning to classify diffusive vs sub-diffusive NP movement. Using mathematic models that account for the mode of NP diffusion, we calculate the percentage of NPs that would cross the mucus barrier over time in airway mucus with varied total solids concentration. From this analysis, we predict rapidly diffusing NPs will cross the mucus barrier in a physiological timespan. Although less efficient, sub-diffusive “hopping” motion, a characteristic of a continuous time random walk, may also enable NPs to cross the mucus barrier. However, NPs exhibiting fractional Brownian sub-diffusion would be rapidly removed from the airways via mucociliary clearance. In samples with increased solids concentration (>5% w/v), we predict up to threefold reductions in the number of nanoparticles capable of crossing the mucus barrier. We also apply this approach to explore diffusion and to predict the fate of influenza A virus within human mucus. We predict only a small fraction of influenza virions will cross the mucus barrier presumably due to physical obstruction and adhesive interactions with mucin-associated glycans. These results provide new tools to evaluate the extent of synthetic and viral nanoparticle penetration through mucus in the lung and other tissues.
- Published
- 2022
- Full Text
- View/download PDF
4. Association of hypertension with mortality in patients hospitalised with COVID-19
- Author
-
Clara K Chow, David Brieger, William van Gaal, Leonard Kritharides, James Weaver, Benjamin Harris, Sidney T Lo, Antony Walton, Isuru Ranasinghe, Anthony Delaney, Brendan McQuillan, William Wilson, Ravinay Bhindi, Andrew I MacIsaac, Girish Dwivedi, Bernard Hudson, Usaid K Allahwala, Astin Lee, Kunwardeep S Bhatia, Hari P Sritharan, Jonathan Ciofani, Justin Chia, Karina Chui, Daniel Nour, Sheran Vasanthakumar, Dhanvee Khandadai, Pavithra Jayadeva, Rohan Bhagwandeen, Christopher Choong, Graham Hillis, George Javorski, Nigel Jepson, Logan Kanagaratnam, George Kotsiou, Andy S C Yong, and John Zhu
- Subjects
Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Objective To assess whether hypertension is an independent risk factor for mortality among patients hospitalised with COVID-19, and to evaluate the impact of ACE inhibitor and angiotensin receptor blocker (ARB) use on mortality in patients with a background of hypertension.Method This observational cohort study included all index hospitalisations with laboratory-proven COVID-19 aged ≥18 years across 21 Australian hospitals. Patients with suspected, but not laboratory-proven COVID-19, were excluded. Registry data were analysed for in-hospital mortality in patients with comorbidities including hypertension, and baseline treatment with ACE inhibitors or ARBs.Results 546 consecutive patients (62.9±19.8 years old, 51.8% male) hospitalised with COVID-19 were enrolled. In the multivariable model, significant predictors of mortality were age (adjusted OR (aOR) 1.09, 95% CI 1.07 to 1.12, p
- Published
- 2021
- Full Text
- View/download PDF
5. Leveraging 3D Model Systems to Understand Viral Interactions with the Respiratory Mucosa
- Author
-
Ethan Iverson, Logan Kaler, Eva L. Agostino, Daniel Song, Gregg A. Duncan, and Margaret A. Scull
- Subjects
3D model ,tissue engineering ,mucus ,periciliary layer ,mucosal barrier ,viral infection ,Microbiology ,QR1-502 - Abstract
Respiratory viruses remain a significant cause of morbidity and mortality in the human population, underscoring the importance of ongoing basic research into virus–host interactions. However, many critical aspects of infection are difficult, if not impossible, to probe using standard cell lines, 2D culture formats, or even animal models. In vitro systems such as airway epithelial cultures at air–liquid interface, organoids, or ‘on-chip’ technologies allow interrogation in human cells and recapitulate emergent properties of the airway epithelium—the primary target for respiratory virus infection. While some of these models have been used for over thirty years, ongoing advancements in both culture techniques and analytical tools continue to provide new opportunities to investigate airway epithelial biology and viral infection phenotypes in both normal and diseased host backgrounds. Here we review these models and their application to studying respiratory viruses. Furthermore, given the ability of these systems to recapitulate the extracellular microenvironment, we evaluate their potential to serve as a platform for studies specifically addressing viral interactions at the mucosal surface and detail techniques that can be employed to expand our understanding.
- Published
- 2020
- Full Text
- View/download PDF
6. Erratum for Petch et al., "Feline Leukemia Virus Frequently Spills Over from Domestic Cats to North American Pumas".
- Author
-
Petch RJ, Gagne RB, Chiu E, Mankowski C, Rudd J, Roelke-Parker M, Vickers TW, Logan KA, Alldredge M, Clifford D, Cunningham MW, Onorato D, and VandeWoude S
- Published
- 2025
- Full Text
- View/download PDF
7. Effects of hunting on mating, relatedness, and genetic diversity in a puma population.
- Author
-
Erwin JA, Logan KA, Trumbo DR, Funk WC, and Culver M
- Subjects
- Animals, Male, Female, Genetics, Population, Colorado, Genotype, Sequence Analysis, DNA, Sexual Behavior, Animal, Puma genetics, Polymorphism, Single Nucleotide genetics, Genetic Variation, Reproduction genetics
- Abstract
Hunting mortality can affect population abundance, demography, patterns of dispersal and philopatry, breeding, and genetic diversity. We investigated the effects of hunting on the reproduction and genetic diversity in a puma population in western Colorado, USA. We genotyped over 11,000 single nucleotide polymorphisms (SNPs), using double-digest, restriction site-associated DNA sequencing (ddRADseq) in 291 tissue samples collected as part of a study on the effects of hunting on puma population abundance and demography in Colorado from 2004 to 2014. The study was designed with a reference period (years 1-5), during which hunting was suspended, followed by a treatment period (years 6-10), in which hunting was reinstated. Our objectives were to examine the effects of hunting on: (1) paternity and male reproductive success; (2) the relatedness between pumas within the population, and (3) genetic diversity. We found that hunting reduced the average age of male breeders. The number of unique fathers siring litters increased each year without hunting and decreased each year during the hunting period. Mated pairs were generally unrelated during both time periods, and females were more closely related than males. Hunting was also associated with increased relatedness among males and decreased relatedness among females in the population. Finally, genetic diversity increased during the period without hunting and decreased each year when hunting was present. This study demonstrates the utility of merging demographic data with large-scale genomic datasets in order to better understand the consequences of management actions. Specifically, we believe that this study highlights the need for long-term experimental research in which hunting mortality is manipulated, including at least one non-harvested control population, as part of a broader adaptive, zone management scheme., (© 2023 John Wiley & Sons Ltd.)
- Published
- 2024
- Full Text
- View/download PDF
8. Feline Leukemia Virus Frequently Spills Over from Domestic Cats to North American Pumas.
- Author
-
Petch RJ, Gagne RB, Chiu E, Mankowski C, Rudd J, Roelke-Parker M, Vickers TW, Logan KA, Alldredge M, Clifford D, Cunningham MW, Onorato D, and VandeWoude S
- Subjects
- Animals, Animals, Wild virology, Lynx virology, Phylogeny, United States, Cats virology, Leukemia Virus, Feline isolation & purification, Leukemia, Feline epidemiology, Puma virology
- Abstract
Feline leukemia virus (FeLV) is a gammaretrovirus with horizontally transmitted and endogenous forms. Domestic cats are the primary reservoir species, but FeLV outbreaks in endangered Florida panthers and Iberian lynxes have resulted in mortalities. To assess prevalence and interspecific/intraspecific transmission, we conducted an extensive survey and phylogenetic analysis of FeLV infection in free-ranging pumas ( n = 641) and bobcats ( n = 212) and shelter domestic cats ( n = 304). Samples were collected from coincident habitats across the United States between 1985 and 2018. FeLV infection was detected in 3.12% of the puma samples, 0.47% of the bobcat samples, and 6.25% of the domestic cat samples analyzed. Puma prevalence varied by location, with Florida having the highest rate of infection. FeLV env sequences revealed variation among isolates, and we identified two distinct clades. Both progressive and regressive infections were identified in cats and pumas. Based on the time and location of sampling and phylogenetic analysis, we inferred 3 spillover events between domestic cats and pumas; 3 puma-to-puma transmissions in Florida were inferred. An additional 14 infections in pumas likely represented spillover events following contact with reservoir host domestic cat populations. Our data provide evidence that FeLV transmission from domestic cats to pumas occurs widely across the United States, and puma-to-puma transmission may occur in genetically and geographically constrained populations. IMPORTANCE Feline leukemia virus (FeLV) is a retrovirus that primarily affects domestic cats. Close interactions with domestic cats, including predation, can lead to the interspecific transmission of the virus to pumas, bobcats, or other feline species. Some infected individuals develop progressive infections, which are associated with clinical signs of disease and can result in mortality. Therefore, outbreaks of FeLV in wildlife, including the North American puma and the endangered Florida panther, are of high conservation concern. This work provides a greater understanding of the dynamics of the transmission of FeLV between domestic cats and wild felids and presents evidence of multiple spillover events and infections in all sampled populations. These findings highlight the concern for pathogen spillover from domestic animals to wildlife but also identify an opportunity to understand viral evolution following cross-species transmissions more broadly.
- Published
- 2022
- Full Text
- View/download PDF
9. A single microbubble formulation carrying 5-fluorouridine, Irinotecan and oxaliplatin to enable FOLFIRINOX treatment of pancreatic and colon cancer using ultrasound targeted microbubble destruction.
- Author
-
Gao J, Logan KA, Nesbitt H, Callan B, McKaig T, Taylor M, Love M, McHale AP, Griffith DM, and Callan JF
- Subjects
- Animals, Antineoplastic Combined Chemotherapy Protocols, Camptothecin therapeutic use, Fluorouracil therapeutic use, Humans, Irinotecan, Leucovorin therapeutic use, Mice, Microbubbles, Oxaliplatin, Treatment Outcome, Uridine analogs & derivatives, Colonic Neoplasms drug therapy, Pancreatic Neoplasms drug therapy
- Abstract
FOLFIRINOX and FOLFOXIRI are combination chemotherapy treatments that incorporate the same drug cocktail (folinic acid, 5-fluorouracil, oxaliplatin and irinotecan) but exploit an altered dosing regimen when used in the management of pancreatic and colorectal cancer, respectively. Both have proven effective in extending life when used to treat patients with metastatic disease but are accompanied by significant adverse effects. To facilitate improved tumour-targeting of this drug combination, an ultrasound responsive microbubble formulation loaded with 5-fluorouridine, irinotecan and oxaliplatin (FIRINOX MB) was developed and its efficacy tested, together with the non-toxic folinic acid, in preclinical murine models of pancreatic and colorectal cancer. A significant improvement in tumour growth delay was observed in both models following ultrasound targeted microbubble destruction (UTMD) mediated FIRINOX treatment with pancreatic tumours 189% and colorectal tumours 82% smaller at the conclusion of the study when compared to animals treated with a standard dose of FOLFIRINOX. Survival prospects were also improved for animals in the UTMD mediated FIRINOX treatment group with an average survival of 22.17 ± 12.19 days (pancreatic) and 44.40 ± 3.85 days (colorectal) compared to standard FOLFIRINOX treatment (15.83 ± 4.17 days(pancreatic) and 37.50 ± 7.72 days (colon)). Notably, this improved efficacy was achieved using FIRINOX MB that contained 5-fluorouricil, irinotecan and oxaliplatin loadings that were 13.44-fold, 9.19-fold and 1.53-fold lower than used for the standard FOLFIRINOX treatment. These results suggest that UTMD enhances delivery of FIRINOX chemotherapy, making it significantly more effective at a substantially lower dose. In addition, the reduced systemic levels of 5-fluorouracil, irinotecan and oxaliplatin should also make the treatment more tolerable and reduce the adverse effects often associated with this treatment., (Copyright © 2021. Published by Elsevier B.V.)
- Published
- 2021
- Full Text
- View/download PDF
10. Synthesis of a gemcitabine-modified phospholipid and its subsequent incorporation into a single microbubble formulation loaded with paclitaxel for the treatment of pancreatic cancer using ultrasound-targeted microbubble destruction.
- Author
-
Logan KA, Nesbitt H, Callan B, Gao J, McKaig T, Taylor M, Love M, McHale AP, and Callan JF
- Subjects
- Albumins pharmacokinetics, Animals, Antineoplastic Combined Chemotherapy Protocols pharmacokinetics, Cell Line, Tumor, Deoxycytidine administration & dosage, Deoxycytidine pharmacokinetics, Drug Carriers chemistry, Drug Compounding methods, Drug Liberation radiation effects, Female, Humans, Male, Mice, Microbubbles, Nanoparticles chemistry, Nanoparticles radiation effects, Paclitaxel pharmacokinetics, Pancreatic Neoplasms pathology, Phospholipids chemistry, Ultrasonic Waves, Xenograft Model Antitumor Assays, Gemcitabine, Albumins administration & dosage, Antineoplastic Combined Chemotherapy Protocols administration & dosage, Deoxycytidine analogs & derivatives, Drug Carriers radiation effects, Paclitaxel administration & dosage, Pancreatic Neoplasms drug therapy
- Abstract
Gemcitabine and nab-paclitaxel (Abraxane®) is a standard of care chemotherapy combination used in the treatment of patients with advanced pancreatic cancer. While the combination has shown a survival benefit when compared to gemcitabine monotherapy, it is associated with significant off-target toxicity. Ultrasound targeted microbubble destruction (UTMD) has emerged as an effective strategy for the site-specific deposition of drug-payloads. However, loading a single microbubble formulation with two drug payloads can be challenging and often involves several manipulations post-microbubble preparation that can be cumbersome and generally results in low / inconsistent drug loadings. In this manuscript, we report the one-pot synthesis of a gemcitabine functionalised phospholipid and use it to successfully generate stable microbubble formulations loaded with gemcitabine (Lipid-Gem MB) or a combination of gemcitabine and paclitaxel (Lipid-Gem-PTX MB). Efficacy of the Lipid-Gem MB and Lipid-Gem-PTX MB formulations, following ultrasound (US) stimulation, was evaluated in a three-dimensional (3D) PANC-1 spheroid model of pancreatic cancer and a mouse model bearing ectopic BxPC-3 tumours. The results demonstrated a significant reduction in the cell viability in spheroids for both formulations reducing from 90 ± 10% to 62 ± 5% for Lipid-Gem MB and 84 ± 10% to 30 ± 6% Lipid-Gem-PTX MB following US irradiation. When compared with a clinically relevant dose of free gemcitabine and paclitaxel (i.e. non-particle bound) in a BxPC-3 murine pancreatic tumour model, both formulations also improved tumour growth delay with tumours 40 ± 20% and 40 ± 30% smaller than the respective free drug formulation when treated with Lipid-Gem MB and Lipid-Gem-PTX MB respectively, at the conclusion of the experiment. These results highlight the potential of UTMD mediated Gem / PTX as a treatment for pancreatic cancer and the facile preparation of Lipid-Gem-PTX MBs using a gemcitabine functionalised lipid should expedite clinical translation of this technology., (Copyright © 2021 Elsevier B.V. All rights reserved.)
- Published
- 2021
- Full Text
- View/download PDF
11. Magnetic microbubble mediated chemo-sonodynamic therapy using a combined magnetic-acoustic device.
- Author
-
Beguin E, Gray MD, Logan KA, Nesbitt H, Sheng Y, Kamila S, Barnsley LC, Bau L, McHale AP, Callan JF, and Stride E
- Subjects
- Acoustics, Animals, Drug Delivery Systems, Humans, Magnetic Phenomena, Mice, Microbubbles, Pancreatic Neoplasms drug therapy
- Abstract
Recent pre-clinical studies have demonstrated the potential of combining chemotherapy and sonodynamic therapy for the treatment of pancreatic cancer. Oxygen-loaded magnetic microbubbles have been explored as a targeted delivery vehicle for this application. Despite preliminary positive results, a previous study identified a significant practical challenge regarding the co-alignment of the magnetic and ultrasound fields. The aim of this study was to determine whether this challenge could be addressed through the use of a magnetic-acoustic device (MAD) combining a magnetic array and ultrasound transducer in a single unit, to simultaneously concentrate and activate the microbubbles at the target site. in vitro experiments were performed in tissue phantoms and followed by in vivo treatment of xenograft pancreatic cancer (BxPC-3) tumours in a murine model. In vitro, a 1.4-fold (p < .01) increase in the deposition of a model therapeutic payload within the phantom was achieved using the MAD compared to separate magnetic and ultrasound devices. In vivo, tumours treated with the MAD had a 9% smaller mean volume 8 days after treatment, while tumours treated with separate devices or microbubbles alone were respectively 45% and 112% larger. This substantial and sustained decrease in tumour volume suggests that the proposed drug delivery approach has the potential to be an effective neoadjuvant therapy for pancreatic cancer patients., (Copyright © 2019 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2020
- Full Text
- View/download PDF
12. Urbanization impacts apex predator gene flow but not genetic diversity across an urban-rural divide.
- Author
-
Trumbo DR, Salerno PE, Logan KA, Alldredge MW, Gagne RB, Kozakiewicz CP, Kraberger S, Fountain-Jones NM, Craft ME, Carver S, Ernest HB, Crooks KR, VandeWoude S, and Funk WC
- Subjects
- Animals, Ecosystem, Forests, Genome genetics, Genotype, Humans, Polymorphism, Single Nucleotide genetics, Population Density, Puma genetics, Urbanization, Gene Flow genetics, Genetic Variation genetics, Predatory Behavior physiology
- Abstract
Apex predators are important indicators of intact natural ecosystems. They are also sensitive to urbanization because they require broad home ranges and extensive contiguous habitat to support their prey base. Pumas (Puma concolor) can persist near human developed areas, but urbanization may be detrimental to their movement ecology, population structure, and genetic diversity. To investigate potential effects of urbanization in population connectivity of pumas, we performed a landscape genomics study of 130 pumas on the rural Western Slope and more urbanized Front Range of Colorado, USA. Over 12,000 single nucleotide polymorphisms (SNPs) were genotyped using double-digest, restriction site-associated DNA sequencing (ddRADseq). We investigated patterns of gene flow and genetic diversity, and tested for correlations between key landscape variables and genetic distance to assess the effects of urbanization and other landscape factors on gene flow. Levels of genetic diversity were similar for the Western Slope and Front Range, but effective population sizes were smaller, genetic distances were higher, and there was more admixture in the more urbanized Front Range. Forest cover was strongly positively associated with puma gene flow on the Western Slope, while impervious surfaces restricted gene flow and more open, natural habitats enhanced gene flow on the Front Range. Landscape genomic analyses revealed differences in puma movement and gene flow patterns in rural versus urban settings. Our results highlight the utility of dense, genome-scale markers to document subtle impacts of urbanization on a wide-ranging carnivore living near a large urban center., (© 2019 John Wiley & Sons Ltd.)
- Published
- 2019
- Full Text
- View/download PDF
13. Feline immunodeficiency virus in puma: Estimation of force of infection reveals insights into transmission.
- Author
-
Reynolds JJH, Carver S, Cunningham MW, Logan KA, Vickers W, Crooks KR, VandeWoude S, and Craft ME
- Abstract
Determining parameters that govern pathogen transmission (such as the force of infection, FOI), and pathogen impacts on morbidity and mortality, is exceptionally challenging for wildlife. Vital parameters can vary, for example across host populations, between sexes and within an individual's lifetime.Feline immunodeficiency virus (FIV) is a lentivirus affecting domestic and wild cat species, forming species-specific viral-host associations. FIV infection is common in populations of puma ( Puma concolor ), yet uncertainty remains over transmission parameters and the significance of FIV infection for puma mortality. In this study, the age-specific FOI of FIV in pumas was estimated from prevalence data, and the evidence for disease-associated mortality was assessed.We fitted candidate models to FIV prevalence data and adopted a maximum likelihood method to estimate parameter values in each model. The models with the best fit were determined to infer the most likely FOI curves. We applied this strategy for female and male pumas from California, Colorado, and Florida.When splitting the data by sex and area, our FOI modeling revealed no evidence of disease-associated mortality in any population. Both sex and location were found to influence the FOI, which was generally higher for male pumas than for females. For female pumas at all sites, and male pumas from California and Colorado, the FOI did not vary with puma age, implying FIV transmission can happen throughout life; this result supports the idea that transmission can occur from mothers to cubs and also throughout adult life. For Florida males, the FOI was a decreasing function of puma age, indicating an increased risk of infection in the early years, and a decreased risk at older ages.This research provides critical insight into pathogen transmission and impact in a secretive and solitary carnivore. Our findings shed light on the debate on whether FIV causes mortality in wild felids like puma, and our approach may be adopted for other diseases and species. The methodology we present can be used for identifying likely transmission routes of a pathogen and also estimating any disease-associated mortality, both of which can be difficult to establish for wildlife diseases in particular., Competing Interests: None declared., (© 2019 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.)
- Published
- 2019
- Full Text
- View/download PDF
14. Rapid paper based colorimetric detection of glucose using a hollow microneedle device.
- Author
-
Nicholas D, Logan KA, Sheng Y, Gao J, Farrell S, Dixon D, Callan B, McHale AP, and Callan JF
- Subjects
- Blood Glucose Self-Monitoring instrumentation, Diabetes Mellitus diagnosis, Equipment Design, Extracellular Fluid chemistry, Needles, Time Factors, Blood Glucose analysis, Colorimetry methods, Glucose analysis, Hyperglycemia diagnosis
- Abstract
The monitoring of blood glucose is a key aspect of diabetes care in limiting the negative effects of hyperglycaemia to both the microvasculature and macrovasculature. Self-monitoring of blood glucose (SMBG) gives an indication of blood glucose at a specific point in time and is recommended to be carried out four times daily. However, due to the inconvenience and associated pain of blood withdrawal, SMBG is often carried out less frequently than recommended or not at all. Extraction and subsequent determination of glucose in interstitial fluid (ISF) using microneedles (MNs) is an emerging area of research due to their minimally invasive nature and lack of associated pain. In this manuscript, a novel method for the fabrication of a hollow microneedle device is reported. The microneedle produced had a sharp bevelled edge and was 400 µm in length. Additionally, a paper backplate embedded with a colorimetric system for the rapid visual determination of glucose in simulated ISF was developed and paired with the hollow MN. This device rapidly extracted simulated ISF within five seconds and its ability to produce a glucose concentration dependent colour change within 30 s was demonstrated. Using this approach, it was possible to discriminate between glucose concentrations in normal glycaemia (4-7 mM) and hyperglycaemia (>7 mM) ranges using the naked eye. While further development is required, the results herein highlight the potential of this device to be used as a blood-free minimally invasive approach to glucose monitoring., (Copyright © 2018. Published by Elsevier B.V.)
- Published
- 2018
- Full Text
- View/download PDF
15. The effects of demographic, social, and environmental characteristics on pathogen prevalence in wild felids across a gradient of urbanization.
- Author
-
Lewis JS, Logan KA, Alldredge MW, Carver S, Bevins SN, Lappin M, VandeWoude S, and Crooks KR
- Subjects
- Animals, Animals, Wild parasitology, Behavior, Animal, Colorado, Demography, Felidae parasitology, Geography, Lynx microbiology, Lynx parasitology, Lynx virology, Models, Theoretical, Puma microbiology, Puma parasitology, Puma virology, Animals, Wild microbiology, Animals, Wild virology, Environment, Felidae microbiology, Felidae virology, Social Behavior, Urbanization
- Abstract
Transmission of pathogens among animals is influenced by demographic, social, and environmental factors. Anthropogenic alteration of landscapes can impact patterns of disease dynamics in wildlife populations, increasing the potential for spillover and spread of emerging infectious diseases in wildlife, human, and domestic animal populations. We evaluated the effects of multiple ecological mechanisms on patterns of pathogen exposure in animal populations. Specifically, we evaluated how ecological factors affected the prevalence of Toxoplasma gondii (Toxoplasma), Bartonella spp. (Bartonella), feline immunodeficiency virus (FIV), and feline calicivirus (FCV) in bobcat and puma populations across wildland-urban interface (WUI), low-density exurban development, and wildland habitat on the Western Slope (WS) and Front Range (FR) of Colorado during 2009-2011. Samples were collected from 37 bobcats and 29 pumas on the WS and FR. As predicted, age appeared to be positively related to the exposure to pathogens that are both environmentally transmitted (Toxoplasma) and directly transmitted between animals (FIV). In addition, WS bobcats appeared more likely to be exposed to Toxoplasma with increasing intraspecific space-use overlap. However, counter to our predictions, exposure to directly-transmitted pathogens (FCV and FIV) was more likely with decreasing space-use overlap (FCV: WS bobcats) and potential intraspecific contacts (FIV: FR pumas). Environmental factors, including urbanization and landscape covariates, were generally unsupported in our models. This study is an approximation of how pathogens can be evaluated in relation to demographic, social, and environmental factors to understand pathogen exposure in wild animal populations.
- Published
- 2017
- Full Text
- View/download PDF
16. Iodinated cyanine dyes: a new class of sensitisers for use in NIR activated photodynamic therapy (PDT).
- Author
-
Atchison J, Kamila S, Nesbitt H, Logan KA, Nicholas DM, Fowley C, Davis J, Callan B, McHale AP, and Callan JF
- Abstract
A new class of iodinated cyanine dyes have been prepared for use in NIR excited photodynamic therapy (PDT) and demonstrated improved efficacy in two pancreatic cell lines as well as excellent tumour control in a murine model of the disease.
- Published
- 2017
- Full Text
- View/download PDF
17. Human expansion precipitates niche expansion for an opportunistic apex predator (Puma concolor).
- Author
-
Moss WE, Alldredge MW, Logan KA, and Pauli JN
- Subjects
- Animals, Animals, Wild, Camelids, New World, Carnivora, Cities, Colorado, Conservation of Natural Resources, Coyotes, Deer, Ecology, Food Chain, Foxes, Goats, Introduced Species, Mephitidae, Population Dynamics, Rabbits, Raccoons, Sciuridae, Ecosystem, Predatory Behavior, Puma physiology
- Abstract
There is growing recognition that developed landscapes are important systems in which to promote ecological complexity and conservation. Yet, little is known about processes regulating these novel ecosystems, or behaviours employed by species adapting to them. We evaluated the isotopic niche of an apex carnivore, the cougar (Puma concolor), over broad spatiotemporal scales and in a region characterized by rapid landscape change. We detected a shift in resource use, from near complete specialization on native herbivores in wildlands to greater use of exotic and invasive species by cougars in contemporary urban interfaces. We show that 25 years ago, cougars inhabiting these same urban interfaces possessed diets that were intermediate. Thus, niche expansion followed human expansion over both time and space, indicating that an important top predator is interacting with prey in novel ways. Thus, though human-dominated landscapes can provide sufficient resources for apex carnivores, they do not necessarily preserve their ecological relationships.
- Published
- 2016
- Full Text
- View/download PDF
18. Pathogen exposure varies widely among sympatric populations of wild and domestic felids across the United States.
- Author
-
Carver S, Bevins SN, Lappin MR, Boydston EE, Lyren LM, Alldredge M, Logan KA, Sweanor LL, Riley SP, Serieys LE, Fisher RN, Vickers TW, Boyce W, Mcbride R, Cunningham MC, Jennings M, Lewis J, Lunn T, Crooks KR, and Vandewoude S
- Subjects
- Animals, Animals, Domestic, Animals, Wild, Bartonella isolation & purification, Bartonella Infections epidemiology, Bartonella Infections microbiology, Cats, Felidae, Species Specificity, Toxoplasma, Toxoplasmosis, Animal parasitology, United States epidemiology, Virus Diseases epidemiology, Virus Diseases virology, Bartonella Infections veterinary, Cat Diseases epidemiology, Toxoplasmosis, Animal epidemiology, Virus Diseases veterinary
- Abstract
Understanding how landscape, host, and pathogen traits contribute to disease exposure requires systematic evaluations of pathogens within and among host species and geographic regions. The relative importance of these attributes is critical for management of wildlife and mitigating domestic animal and human disease, particularly given rapid ecological changes, such as urbanization. We screened > 1000 samples from sympatric populations of puma (Puma concolor), bobcat (Lynx rufus), and domestic cat (Felis catus) across urban gradients in six sites, representing three regions, in North America for exposure to a representative suite of bacterial, protozoal, and viral pathogens (Bartonella sp., Toxoplasma gondii, feline herpesvirus-1, feline panleukopenea virus, feline calicivirus, and feline immunodeficiency virus). We evaluated prevalence within each species, and examined host trait and land cover determinants of exposure; providing an unprecedented analysis of factors relating to potential for infections in domesticated and wild felids. Prevalence differed among host species (highest for puma and lowest for domestic cat) and was greater for indirectly transmitted pathogens. Sex was inconsistently predictive of exposure to directly transmitted pathogens only, and age infrequently predictive of both direct and indirectly transmitted pathogens. Determinants of pathogen exposure were widely divergent between the wild felid species. For puma, suburban land use predicted increased exposure to Bartonella sp. in southern California, and FHV-1 exposure increased near urban edges in Florida. This may suggest interspecific transmission with domestic cats via flea vectors (California) and direct contact (Florida) around urban boundaries. Bobcats captured near urban areas had increased exposure to T. gondii in Florida, suggesting an urban source of prey Bobcats captured near urban areas in Colorado and Florida had higher FIV exposure, possibly suggesting increased intraspecific interactions through pile-up of home ranges. Beyond these regional and pathogen specific relationships, proximity to the wildland-urban interface did not generally increase the probability of disease exposure in wild or domestic felids, empha- sizing the importance of local ecological determinants. Indeed, pathogen exposure was often negatively associated with the wildland-urban interface for all felids. Our analyses suggest cross-species pathogen transmission events around this interface may be infrequent, but followed by self-sustaining propagation within the new host species. virus; puma (Puma concolor); Toxoplasma gondii; urbanization.
- Published
- 2016
- Full Text
- View/download PDF
19. The effects of urbanization on population density, occupancy, and detection probability of wild felids.
- Author
-
Lewis JS, Logan KA, Alldredge MW, Bailey LL, VandeWoude S, and Crooks KR
- Subjects
- Animal Identification Systems, Animals, Animals, Wild, Colorado, Female, Male, Models, Biological, Population Density, Lynx physiology, Puma physiology, Urbanization
- Abstract
Urbanization is a primary driver of landscape conversion, with far-reaching effects on landscape pattern and process, particularly related to the population characteristics of animals. Urbanization can alter animal movement and habitat quality, both of which can influence population abundance and persistence. We evaluated three important population characteristics (population density, site occupancy, and species detection probability) of a medium-sized and a large carnivore across varying levels of urbanization. Specifically, we studied bobcat and puma populations across wildland, exurban development, and wildland-urban interface (WUI) sampling grids to test hypotheses evaluating how urbanization affects wild felid populations and their prey. Exurban development appeared to have a greater impact on felid populations than did habitat adjacent to a major urban area (i.e., WUI); estimates of population density for both bobcats and pumas were lower in areas of exurban development compared to wildland areas, whereas population density was similar between WUI and wildland habitat. Bobcats and pumas were less likely to be detected in habitat as the amount of human disturbance associated with residential development increased at a site, which was potentially related to reduced habitat quality resulting from urbanization. However, occupancy of both felids was similar between grids in both study areas, indicating that this population metric was less sensitive than density. At the scale of the sampling grid, detection probability for bobcats in urbanized habitat was greater than in wildland areas, potentially due to restrictive movement corridors and funneling of animal movements in landscapes influenced by urbanization. Occupancy of important felid prey (cottontail rabbits and mule deer) was similar across levels of urbanization, although elk occupancy was lower in urbanized areas. Our study indicates that the conservation of medium- and large-sized felids associated with urbanization likely will be most successful if large areas of wildland habitat are maintained, even in close proximity to urban areas, and wildland habitat is not converted to low-density residential development.
- Published
- 2015
- Full Text
- View/download PDF
20. Evolution of puma lentivirus in bobcats (Lynx rufus) and mountain lions (Puma concolor) in North America.
- Author
-
Lee JS, Bevins SN, Serieys LE, Vickers W, Logan KA, Aldredge M, Boydston EE, Lyren LM, McBride R, Roelke-Parker M, Pecon-Slattery J, Troyer JL, Riley SP, Boyce WM, Crooks KR, and VandeWoude S
- Subjects
- Animals, Cluster Analysis, Evolution, Molecular, Genetic Variation, Immunodeficiency Virus, Feline classification, Immunodeficiency Virus, Feline genetics, Molecular Sequence Data, North America, Phylogeography, Recombination, Genetic, Selection, Genetic, Viral Proteins genetics, Genome, Viral, Immunodeficiency Virus, Feline isolation & purification, Lynx virology, Puma virology, RNA, Viral genetics, Sequence Analysis, DNA
- Abstract
Mountain lions (Puma concolor) throughout North and South America are infected with puma lentivirus clade B (PLVB). A second, highly divergent lentiviral clade, PLVA, infects mountain lions in southern California and Florida. Bobcats (Lynx rufus) in these two geographic regions are also infected with PLVA, and to date, this is the only strain of lentivirus identified in bobcats. We sequenced full-length PLV genomes in order to characterize the molecular evolution of PLV in bobcats and mountain lions. Low sequence homology (88% average pairwise identity) and frequent recombination (1 recombination breakpoint per 3 isolates analyzed) were observed in both clades. Viral proteins have markedly different patterns of evolution; sequence homology and negative selection were highest in Gag and Pol and lowest in Vif and Env. A total of 1.7% of sites across the PLV genome evolve under positive selection, indicating that host-imposed selection pressure is an important force shaping PLV evolution. PLVA strains are highly spatially structured, reflecting the population dynamics of their primary host, the bobcat. In contrast, the phylogeography of PLVB reflects the highly mobile mountain lion, with diverse PLVB isolates cocirculating in some areas and genetically related viruses being present in populations separated by thousands of kilometers. We conclude that PLVA and PLVB are two different viral species with distinct feline hosts and evolutionary histories. Importance: An understanding of viral evolution in natural host populations is a fundamental goal of virology, molecular biology, and disease ecology. Here we provide a detailed analysis of puma lentivirus (PLV) evolution in two natural carnivore hosts, the bobcat and mountain lion. Our results illustrate that PLV evolution is a dynamic process that results from high rates of viral mutation/recombination and host-imposed selection pressure., (Copyright © 2014, American Society for Microbiology. All Rights Reserved.)
- Published
- 2014
- Full Text
- View/download PDF
21. Novel gammaherpesviruses in North American domestic cats, bobcats, and pumas: identification, prevalence, and risk factors.
- Author
-
Troyer RM, Beatty JA, Stutzman-Rodriguez KR, Carver S, Lozano CC, Lee JS, Lappin MR, Riley SP, Serieys LE, Logan KA, Sweanor LL, Boyce WM, Vickers TW, McBride R, Crooks KR, Lewis JS, Cunningham MW, Rovnak J, Quackenbush SL, and VandeWoude S
- Subjects
- Animals, Animals, Wild virology, Cat Diseases epidemiology, Cats, Female, Gammaherpesvirinae classification, Gammaherpesvirinae genetics, Herpesviridae Infections epidemiology, Herpesviridae Infections virology, Male, Molecular Sequence Data, Phylogeny, Risk Factors, United States epidemiology, Cat Diseases virology, Gammaherpesvirinae isolation & purification, Herpesviridae Infections veterinary, Lynx virology, Puma virology
- Abstract
Unlabelled: Gammaherpesviruses (GHVs) are a diverse and rapidly expanding group of viruses associated with a variety of disease conditions in humans and animals. To identify felid GHVs, we screened domestic cat (Felis catus), bobcat (Lynx rufus), and puma (Puma concolor) blood cell DNA samples from California, Colorado, and Florida using a degenerate pan-GHV PCR. Additional pan-GHV and long-distance PCRs were used to sequence a contiguous 3.4-kb region of each putative virus species, including partial glycoprotein B and DNA polymerase genes. We identified three novel GHVs, each present predominantly in one felid species: Felis catus GHV 1 (FcaGHV1) in domestic cats, Lynx rufus GHV 1 (LruGHV1) in bobcats, and Puma concolor GHV 1 (PcoGHV1) in pumas. To estimate infection prevalence, we developed real-time quantitative PCR assays for each virus and screened additional DNA samples from all three species (n = 282). FcaGHV1 was detected in 16% of domestic cats across all study sites. LruGHV1 was detected in 47% of bobcats and 13% of pumas across all study sites, suggesting relatively common interspecific transmission. PcoGHV1 was detected in 6% of pumas, all from a specific region of Southern California. The risk of infection for each host varied with geographic location. Age was a positive risk factor for bobcat LruGHV1 infection, and age and being male were risk factors for domestic cat FcaGHV1 infection. Further characterization of these viruses may have significant health implications for domestic cats and may aid studies of free-ranging felid ecology., Importance: Gammaherpesviruses (GHVs) establish lifelong infection in many animal species and can cause cancer and other diseases in humans and animals. In this study, we identified the DNA sequences of three GHVs present in the blood of domestic cats (Felis catus), bobcats (Lynx rufus), and pumas (Puma concolor; also known as mountain lions, cougars, and panthers). We found that these viruses were closely related to, but distinct from, other known GHVs of animals and represent the first GHVs identified to be native to these feline species. We developed techniques to rapidly and specifically detect the DNA of these viruses in feline blood and found that the domestic cat and bobcat viruses were widespread across the United States. In contrast, puma virus was found only in a specific region of Southern California. Surprisingly, the bobcat virus was also detected in some pumas, suggesting relatively common virus transmission between these species. Adult domestic cats and bobcats were at greater risk for infection than juveniles. Male domestic cats were at greater risk for infection than females. This study identifies three new viruses that are widespread in three feline species, indicates risk factors for infection that may relate to the route of infection, and demonstrates cross-species transmission between bobcats and pumas. These newly identified viruses may have important effects on feline health and ecology.
- Published
- 2014
- Full Text
- View/download PDF
22. Three pathogens in sympatric populations of pumas, bobcats, and domestic cats: implications for infectious disease transmission.
- Author
-
Bevins SN, Carver S, Boydston EE, Lyren LM, Alldredge M, Logan KA, Riley SP, Fisher RN, Vickers TW, Boyce W, Salman M, Lappin MR, Crooks KR, and VandeWoude S
- Subjects
- Animals, Animals, Domestic, Animals, Wild, Bartonella, Cats, Immunodeficiency Virus, Feline, Infections microbiology, Lynx, Puma, Toxoplasma, Felidae, Infections transmission
- Abstract
Anthropogenic landscape change can lead to increased opportunities for pathogen transmission between domestic and non-domestic animals. Pumas, bobcats, and domestic cats are sympatric in many areas of North America and share many of the same pathogens, some of which are zoonotic. We analyzed bobcat, puma, and feral domestic cat samples collected from targeted geographic areas. We examined exposure to three pathogens that are taxonomically diverse (bacterial, protozoal, viral), that incorporate multiple transmission strategies (vector-borne, environmental exposure/ingestion, and direct contact), and that vary in species-specificity. Bartonella spp., Feline Immunodeficiency Virus (FIV), and Toxoplasma gondii IgG were detected in all three species with mean respective prevalence as follows: puma 16%, 41% and 75%; bobcat 31%, 22% and 43%; domestic cat 45%, 10% and 1%. Bartonella spp. were highly prevalent among domestic cats in Southern California compared to other cohort groups. Feline Immunodeficiency Virus exposure was primarily associated with species and age, and was not influenced by geographic location. Pumas were more likely to be infected with FIV than bobcats, with domestic cats having the lowest infection rate. Toxoplasma gondii seroprevalence was high in both pumas and bobcats across all sites; in contrast, few domestic cats were seropositive, despite the fact that feral, free ranging domestic cats were targeted in this study. Interestingly, a directly transmitted species-specific disease (FIV) was not associated with geographic location, while exposure to indirectly transmitted diseases--vector-borne for Bartonella spp. and ingestion of oocysts via infected prey or environmental exposure for T. gondii--varied significantly by site. Pathogens transmitted by direct contact may be more dependent upon individual behaviors and intra-specific encounters. Future studies will integrate host density, as well as landscape features, to better understand the mechanisms driving disease exposure and to predict zones of cross-species pathogen transmission among wild and domestic felids.
- Published
- 2012
- Full Text
- View/download PDF
23. Wild felids as hosts for human plague, Western United States.
- Author
-
Bevins SN, Tracey JA, Franklin SP, Schmit VL, Macmillan ML, Gage KL, Schriefer ME, Logan KA, Sweanor LL, Alldredge MW, Krumm C, Boyce WM, Vickers W, Riley SP, Lyren LM, Boydston EE, Fisher RN, Roelke ME, Salman M, Crooks KR, and Vandewoude S
- Subjects
- Animals, Antibodies, Bacterial blood, Colorado, Disease Reservoirs, Humans, Seroepidemiologic Studies, Yersinia pestis immunology, Lynx microbiology, Plague transmission, Puma microbiology, Yersinia pestis isolation & purification
- Abstract
Plague seroprevalence was estimated in populations of pumas and bobcats in the western United States. High levels of exposure in plague-endemic regions indicate the need to consider the ecology and pathobiology of plague in nondomestic felid hosts to better understand the role of these species in disease persistence and transmission.
- Published
- 2009
- Full Text
- View/download PDF
24. Expression of wilms' tumor gene and protein localization during ovarian formation and follicular development in sheep.
- Author
-
Logan KA, McNatty KP, and Juengel JL
- Subjects
- Animals, Animals, Newborn physiology, Embryo, Mammalian physiology, Female, RNA, Messenger metabolism, Sheep, Tissue Distribution, Gene Expression, Genes, Wilms Tumor, Ovarian Follicle physiology, Ovary embryology, WT1 Proteins metabolism
- Abstract
Wilms' tumor protein (WT1) is a transcriptional repressor essential for the development of mammalian kidneys and gonads. To gain insight into possible roles of WT1 in ovarian formation and follicular function, we studied patterns of mRNA and protein localization throughout fetal gonadal development and in ovaries of 4-wk-old and adult sheep. At Day 24 after conception, strong expression of WT1 mRNA and protein was observed in the coelomic epithelial region of the mesonephros where the gonad was forming. By Day 30, expression was observed in the surface epithelium and in many mesenchymal and endothelial cells of the gonad. Epithelial cells continued to express WT1 throughout gonadal development, as did pregranulosa cells during the process of follicular formation. However, WT1 expression was not observed in germ cells. During follicular growth, granulosa cells expressed WT1 from the type 1 (primordial) to the type 4 stages, but thereafter expression was reduced in type 5 (antral) follicles, consistent with the differentiation of granulosa cells into steroid-producing cells. The possible progenitor cells for the theca interna (i.e., the cell streams in the ovarian interstitium) expressed WT1 heterogeneously. However, differentiated theca cells in antral follicles did not express WT1. Strong expression of WT1 was observed during gonadal development, which is consistent with a role for WT1 in ovarian and follicular formation in the ewe. WT1 was identified in many cells of the neonatal and adult ovaries, including granulosa cells, suggesting that this factor is important for preantral follicular growth. However, the decline in WT1 expression in antral follicles suggests that WT1 may prevent premature differentiation of somatic cells of the follicle during early follicular growth.
- Published
- 2003
- Full Text
- View/download PDF
25. Onset of steroidogenic enzyme gene expression during ovarian follicular development in sheep.
- Author
-
Logan KA, Juengel JL, and McNatty KP
- Subjects
- 3-Hydroxysteroid Dehydrogenases analysis, 3-Hydroxysteroid Dehydrogenases genetics, Animals, Aromatase analysis, Aromatase genetics, Cholesterol Side-Chain Cleavage Enzyme analysis, Cholesterol Side-Chain Cleavage Enzyme genetics, Cytochrome P-450 Enzyme System metabolism, DNA-Binding Proteins analysis, DNA-Binding Proteins genetics, Female, Fushi Tarazu Transcription Factors, Homeodomain Proteins, Immunohistochemistry, In Situ Hybridization, Oocytes chemistry, Ovarian Follicle enzymology, Phosphoproteins analysis, Phosphoproteins genetics, RNA, Messenger analysis, Receptors, Cytoplasmic and Nuclear, Receptors, LH analysis, Receptors, LH genetics, Steroid 17-alpha-Hydroxylase analysis, Steroid 17-alpha-Hydroxylase genetics, Steroidogenic Factor 1, Transcription Factors analysis, Transcription Factors genetics, Steroidogenic Acute Regulatory Protein, Cytochrome P-450 Enzyme System genetics, Gene Expression, Ovarian Follicle physiology, Sheep physiology, Steroids biosynthesis
- Abstract
Steroidogenesis is a major function of the developing follicle. However, little is known about the stage of onset of steroid regulatory proteins during follicular development in sheep. In this study, several steroidogenic enzymes were studied by immunohistochemistry and/or in situ hybridization; cytochrome P450 side chain cleavage (P450(scc)), cytochrome P450 17alpha-hydroxylase (17alphaOH), 3beta-hydroxysteroid dehydrogenase (3beta-HSD), cytochrome P450 aromatase (P450(arom)), steroidogenic factor 1 (SF-1), steroidogenic acute regulatory protein (StAR), and LH receptor (LH-R). To define the stages of follicular growth, ovarian maps were drawn from serial sections of ovine ovaries, and follicles were located and classified at specific stages of growth based on morphological criteria. In this way, the precise onset of gene expression with respect to stages of follicular growth for all these proteins could be observed. The key findings were that ovine oocytes express StAR mRNA at all stages of follicular development and that granulosa cells in follicle types 1-3 express 3beta-HSD and SF-1. Furthermore, the onset of expression in theca cells of StAR, P450(scc), 17alphaOH, 3beta-HSD, and LH-R occurred in large type 4 follicles just before antrum formation. This finding suggests that although the theca interna forms from the type 2 stage, it does not become steroidogenically active until later in development. These studies also confirm that granulosa cells of large type 5 follicles express SF-1, StAR, P450(scc), LH-R, and P450(arom) genes. These findings raise new questions regarding the roles of steroidogenic regulatory factors in early follicular development.
- Published
- 2002
- Full Text
- View/download PDF
26. A simple, two-component buffer enhances use of chromatofocusing for processing of therapeutic proteins.
- Author
-
Logan KA, Lagerlund I, and Chamow SM
- Subjects
- Biotechnology, Buffers, Escherichia coli genetics, Evaluation Studies as Topic, Human Growth Hormone genetics, Human Growth Hormone isolation & purification, Humans, Hydrogen-Ion Concentration, Recombinant Proteins genetics, Recombinant Proteins therapeutic use, Chromatography, Ion Exchange methods, Isoelectric Focusing methods, Recombinant Proteins isolation & purification
- Abstract
To extend the feasibility of chromatofocusing to industrial use, we have developed a simple chromatofocusing buffer system capable of generating a smooth pH gradient without the use of an external gradient maker. Using two cationic buffering components, an internal pH gradient is produced on appropriate chromatography media over a broad pH range (9.5 to 5.0). The utility of this buffer system is demonstrated with PBE94 and DEAE Sepharose fast flow ion-exchangers, as well as with experimental fast flow chromatofocusing gels. Using a rapid flow rate, we evaluated this buffer system for recovery of a therapeutic protein from a bacterial cell extract. The simplicity of the buffer system requiring no external gradient maker, coupled with the use of fast flow chromatographic media to produce broad-range pH gradients, improves the scalability of chromatofocusing for processing of therapeutic proteins., (Copyright 1999 John Wiley & Sons, Inc.)
- Published
- 1999
27. Titration of human immunodeficiency virus type 1 (HIV-1) and quantitative analysis of virus expression in vitro using liquid RNA-RNA hybridization.
- Author
-
Volsky DJ, Pellegrino MG, Li G, Logan KA, Aswell JE, Lawrence NP, and Decker SR
- Subjects
- Acquired Immunodeficiency Syndrome genetics, Gene Expression, Humans, Nucleic Acid Hybridization, Sensitivity and Specificity, Solvents, Tumor Cells, Cultured, HIV-1 genetics, RNA, Viral metabolism
- Abstract
An assay is described for titration of human immunodeficiency virus type 1 (HIV-1) and for quantitative analysis of virus expression in vitro. The assay utilizes a liquid RNA-RNA hybridization method coupled with reversible target capture (RTC) on oligo(dT) derivatized magnetic particles. The assay provides a rapid, specific, and sensitive method for quantitation of HIV-1 RNA molecules present either in cells or in viral particles from cell-free culture media. Chronically infected monocytoid U1.1 cells were found to carry 52 pg HIV-1 RNA per 200,000 cells (160 HIV-1 RNA molecules per cell). In contrast, acutely infected CEM and H9 cells carried 3010 and 4370 pg HIV-1 RNA per 200,000 cells (9040 and 13,110 HIV-1 RNA molecules per cell, respectively). No hybridization was observed with uninfected cells or cells infected with HIV-2, HTLV-I, HTLV-II, or EBV. Use of liquid HIV-1 RNA hybridization in association with HIV-1 protein detection methods permits more complete characterization of HIV-1 expression in host cells than either method alone, and also provides a method for standardizing preparations of virus.
- Published
- 1990
- Full Text
- View/download PDF
28. Histones H1(0) and H5 share common epitopes with RNA polymerase II.
- Author
-
Logan KA, Dahmus ME, and Bradbury EM
- Subjects
- Animals, Cattle, Chickens, Chymotrypsin, Cyanogen Bromide, Electrophoresis, Polyacrylamide Gel, Immune Sera immunology, Immunoassay, Molecular Weight, Peptide Fragments immunology, Sheep, Trypsin, Epitopes immunology, Histones immunology, RNA Polymerase II immunology
- Abstract
We report here the cross-reaction of RNA polymerase II antiserum with histones H1(0) and H5 and the complementary cross-reactions of antisera to the globular domain of histone H1(0) (GH1(0)) and histone H5 (GH5) with RNA polymerase II. Immunoblotting of RNA polymerase II antiserum with fragments of histone H1(0) localized the cross-reaction at the junction of the globular and C-terminal domains of histone H1(0). The structural homology implied by these cross-reactions is interesting in light of reports that suggest H1(0) may play a role in differentiation and development.
- Published
- 1988
29. Immobilizing wild mountain lions (Felis concolor) with ketamine hydrochloride and xylazine hydrochloride.
- Author
-
Logan KA, Thorne ET, Irwin LL, and Skinner R
- Subjects
- Animals, Animals, Wild, Body Weight, Dose-Response Relationship, Drug, Drug Combinations, Female, Immobilization, Male, Carnivora physiology, Ketamine administration & dosage, Thiazines administration & dosage, Xylazine administration & dosage
- Abstract
A mixture of 120 mg ketamine hydrochloride (KHCL)/20 mg xylazine hydrochloride (XHCL)/ml was used to immobilize 37 wild mountain lions (Felis concolor) 46 times. Observations were recorded during 37 trials that included kittens, adult females, and adult males. Dosages were based on 11 mg KHCL and 1.8 mg XHCL/kg estimated body weight. Actual doses for 24 lions requiring a single injection for immobilization ranged from 4.7-15.8 mg KHCL/kg and 0.8-2.6 mg XHCL/kg. Induction, duration, and recovery times did not differ (P greater than 0.05) between the sex and age classes. Two kittens were overdosed with the drug combination, but the effects were not life threatening. Eleven other lions, nine of which were initially underdosed, required additional injections of the drug combination for safe handling. Immobilization was characterized initially by semi-consciousness, open eyelids, pupillary dilation, and muscle rigidity. Later, most lions appeared unconscious, muscles relaxed, and breathing slowed considerably. No convulsions or hypersalivation occurred. The KHCL/XHCL mixture given at approximately 11 mg KHCL and 1.8 mg XHCL/kg body weight proved useful for immobilizing wild mountain lions for research purposes. Suggestions for case of immobilized cats are included.
- Published
- 1986
- Full Text
- View/download PDF
30. Antibody against globular domain of H10 histone.
- Author
-
Yasuda H, Logan KA, and Bradbury EM
- Subjects
- Animals, Antigen-Antibody Complex, Cattle, Chickens, Erythrocytes, Histones isolation & purification, Liver, Rana catesbeiana, Antibodies, Epitopes analysis, Histones immunology
- Abstract
Antibodies against the globular domain of histones H10 and H5 were developed in rabbit. The antibody against the globular domain of H5 cross-reacted with H10 but not with H1; the antibody against the globular domain of H10 did not cross-react with H5, H1 or with HMG proteins. The globular domain of H10 therefore appears to have an immunological determinant(s) which does not exist in H1 and H5. By use of these antibodies, we show that nucleated erythrocytes of bullfrog contain an H10-like protein (not an H5-like protein). This observation coincided with the report of Shimada, T. et al. [J. Biol. Chem. 256 (1981) 10577-10582]. These antibodies have application in detecting H10-like proteins in eukaryotic cells.
- Published
- 1984
- Full Text
- View/download PDF
31. Identification of histone H1(0) in Physarum polycephalum. Its high level in the plasmodial stage increases in amount and phosphorylation in the sclerotial stage.
- Author
-
Yasuda H, Mueller RD, Logan KA, and Bradbury EM
- Subjects
- Amino Acids analysis, Animals, Cattle, Chromatin ultrastructure, Gene Expression Regulation, Histones physiology, Mitosis, Phosphorylation, Physarum growth & development, Protein Kinases metabolism, Sequence Homology, Nucleic Acid, Species Specificity, Histones metabolism, Physarum metabolism
- Abstract
An antiserum specific for the globular domain of the bovine very lysine-rich histone subfraction H1(0) cross-reacted with a single protein band in the chromosomal proteins isolated from microplasmodia of the true slime mold Physarum polycephalum. Its amino acid composition was characteristic of a very lysine-rich histone which supported its identification as Physarum H1(0). Unlike Physarum H1(0), which is 50% larger than mammalian H1, Physarum H1(0) migrated very close to bovine H1(0) on sodium dodecyl sulfate gels. In microplasmodia, the ratio of H1(0) to H1 was 0.66, whereas in sclerotia H1(0)/H1 was 1.33. Furthermore, both H1 and H1(0) in sclerotia were highly phosphorylated. The high level of H1(0) in the mitotically active microplasmodia argues against the proposed role of H1(0) just as an inhibitor of DNA replication. More probable is an association of H1(0) with quiescent but transcriptionally competent chromatin which could also include cell cycle genes. Hyperphosphorylation of H1 and H1(0) in sclerotia is probably required to maintain an inactive condensed state which can be reversed by dephosphorylation to allow transcriptionally competent chromatin to become available for expression.
- Published
- 1986
32. The parolee as normal volunteer for clinical research.
- Author
-
Logan KA
- Subjects
- Adult, Evaluation Studies as Topic, Humans, Criminology, Human Experimentation
- Published
- 1967
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.