826 results on '"Liver segmentation"'
Search Results
2. Training robust T1-weighted magnetic resonance imaging liver segmentation models using ensembles of datasets with different contrast protocols and liver disease etiologies.
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Patel, Nihil, Celaya, Adrian, Eltaher, Mohamed, Glenn, Rachel, Savannah, Kari Brewer, Brock, Kristy K., Sanchez, Jessica I., Calderone, Tiffany L., Cleere, Darrel, Elsaiey, Ahmed, Cagley, Matthew, Gupta, Nakul, Victor, David, Beretta, Laura, Koay, Eugene J., Netherton, Tucker J., and Fuentes, David T.
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LIVER disease etiology , *MAGNETIC resonance imaging , *DEEP learning , *LIVER cancer , *LIVER , *IMAGE segmentation - Abstract
Image segmentation of the liver is an important step in treatment planning for liver cancer. However, manual segmentation at a large scale is not practical, leading to increasing reliance on deep learning models to automatically segment the liver. This manuscript develops a generalizable deep learning model to segment the liver on T1-weighted MR images. In particular, three distinct deep learning architectures (nnUNet, PocketNet, Swin UNETR) were considered using data gathered from six geographically different institutions. A total of 819 T1-weighted MR images were gathered from both public and internal sources. Our experiments compared each architecture's testing performance when trained both intra-institutionally and inter-institutionally. Models trained using nnUNet and its PocketNet variant achieved mean Dice-Sorensen similarity coefficients>0.9 on both intra- and inter-institutional test set data. The performance of these models suggests that nnUNet and PocketNet liver segmentation models trained on a large and diverse collection of T1-weighted MR images would on average achieve good intra-institutional segmentation performance. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
3. A Reference Interval for CT-Based Liver Volume in Dogs without Hepatic Disease.
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Nishi, Reo, Moore, George, and Murakami, Masahiro
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ANIMAL disease control ,COMPUTED tomography ,BODY weight ,CONFIDENCE intervals ,LIVER ,VETERINARY medicine - Abstract
Simple Summary: The measurement of canine liver size is essential, particularly in the evaluation of hepatic disease. Computed tomography (CT)-based liver volumetry can be useful for the assessment of liver size, but the reference interval has not been reported in dogs without hepatic disease. The purpose of the present study was to define the reference interval for CT-based liver volume normalized by body weight in dogs with no history of hepatic disease. The weight-based reference interval lower limit of 11.1–15.5 (90% confidence interval [CI]) to an upper limit of 31.9–42.6 (90% CI) cm
3 /kg was defined by evaluating CT scans of 121 dogs with no history of hepatic disease. This weight-based reference interval provides an accurate assessment of liver volume changes in dogs with various hepatic diseases, thereby facilitating the diagnosis and management of hepatic disease in veterinary medicine. In both human and veterinary medicine, computed tomography (CT) volumetry provides a quantitative and accurate measure of liver volume. While CT volumetry is recognized as a useful method for assessing liver volume in dogs, a statistically significant reference interval for liver volume in dogs with no history of hepatic disease has not been reported. The purpose of the present study was to define a reference interval for liver volume with no history of hepatic disease using CT volumetry. Medical records from 2 June 2020 to 25 July 2022 were retrospectively reviewed, including 121 dogs that underwent abdominal CT scans and had no history of hepatic disease. Liver volumes were measured using CT volumetry and normalized by body weight. The median of normalized CT-based liver volume in 121 dogs was 22.2 cm3 /kg. Based on these data, a weight-based reference interval lower limit of 11.1–15.5 (90% confidence interval [CI]) to an upper limit of 31.9–42.6 (90% CI) cm3 /kg for CT-based liver volume was defined in dogs without hepatic disease. This study provides an accurate assessment of liver volume changes in dogs with various hepatic diseases. [ABSTRACT FROM AUTHOR]- Published
- 2024
- Full Text
- View/download PDF
4. Training robust T1-weighted magnetic resonance imaging liver segmentation models using ensembles of datasets with different contrast protocols and liver disease etiologies
- Author
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Nihil Patel, Adrian Celaya, Mohamed Eltaher, Rachel Glenn, Kari Brewer Savannah, Kristy K. Brock, Jessica I. Sanchez, Tiffany L. Calderone, Darrel Cleere, Ahmed Elsaiey, Matthew Cagley, Nakul Gupta, David Victor, Laura Beretta, Eugene J. Koay, Tucker J. Netherton, and David T. Fuentes
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Liver segmentation ,T1-weighted MRI ,Deep learning ,Robustness ,Multi-dataset training ,Liver model ,Medicine ,Science - Abstract
Abstract Image segmentation of the liver is an important step in treatment planning for liver cancer. However, manual segmentation at a large scale is not practical, leading to increasing reliance on deep learning models to automatically segment the liver. This manuscript develops a generalizable deep learning model to segment the liver on T1-weighted MR images. In particular, three distinct deep learning architectures (nnUNet, PocketNet, Swin UNETR) were considered using data gathered from six geographically different institutions. A total of 819 T1-weighted MR images were gathered from both public and internal sources. Our experiments compared each architecture’s testing performance when trained both intra-institutionally and inter-institutionally. Models trained using nnUNet and its PocketNet variant achieved mean Dice-Sorensen similarity coefficients>0.9 on both intra- and inter-institutional test set data. The performance of these models suggests that nnUNet and PocketNet liver segmentation models trained on a large and diverse collection of T1-weighted MR images would on average achieve good intra-institutional segmentation performance.
- Published
- 2024
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- View/download PDF
5. A Novel Medical Image Segmentation Using Neutrosophic Sets With Slope Variation.
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Siri, Sangeeta K., Kumar, S. Pramod, and Latte, Mrityunjaya V.
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OBJECT recognition (Computer vision) , *COMPUTED tomography , *COMPUTER-assisted image analysis (Medicine) , *GAUSSIAN function , *MEMBERSHIP functions (Fuzzy logic) - Abstract
Computer-Aided Diagnostic methods demand the precise segmentation of medical images. The important stage in diagnosis is the extraction of the Region of Interest (ROI). Illustration of the image in a more meaningful way is the aim of segmentation. Segmentation finds extensive use in computer vision, object recognition, image recovery based on the content, etc. In the proposed model, Slope Variation Scatter (SVS) plot of image is obtained to compute vertices of Neutrosophic Gaussian Function (NGF). The SVS describes global variation rate of image histogram. In this, the crests represent local mean of pixels/ certainty mean and valleys represents uncertainty mean. A novel NGF is membership function designed to convert abdominal Computed Tomography (CT) to Neutrosophic Subsets (NS). The NS comprises of object, nonobject and edge subsets. The Object Subset (OS) represents liver or kidney, Nonobject Subset (NOS) represents background of liver/kidney and Edge Subset (ES) represents edges of liver or kidney. The proposed model is experimented on 106 abdominal CT images to segment the liver and kidney accurately. The experimental outcomes are compared with Fuzzy C Means algorithm (FCM), show that the anticipated framework is proficient of segmenting an intended organ automatically and precisely. The proposed model achieves average accuracy, Relative Volume Difference (RVD) and Dice Similarity Factor (DSF) for liver are 91.01%, 8.23% and 89.61% respectively. The average accuracy, RVD and DSF for kidney are 91.11%, 5.96% and 91.45% respectively. [ABSTRACT FROM AUTHOR]
- Published
- 2024
6. Assessing the performance of AI-assisted technicians in liver segmentation, Couinaud division, and lesion detection: a pilot study.
- Author
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Núñez, Luis, Ferreira, Carlos, Mojtahed, Amirkasra, Lamb, Hildo, Cappio, Stefano, Husainy, Mohammad Ali, Dennis, Andrea, and Pansini, Michele
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COLORECTAL liver metastasis , *INTRACLASS correlation , *LIVER cancer , *ARTIFICIAL intelligence , *RADIOLOGISTS - Abstract
Background: In patients with primary and secondary liver cancer, the number and sizes of lesions, their locations within the Couinaud segments, and the volume and health status of the future liver remnant are key for informing treatment planning. Currently this is performed manually, generally by trained radiologists, who are seeing an inexorable growth in their workload. Integrating artificial intelligence (AI) and non-radiologist personnel into the workflow potentially addresses the increasing workload without sacrificing accuracy. This study evaluated the accuracy of non-radiologist technicians in liver cancer imaging compared with radiologists, both assisted by AI. Methods: Non-contrast T1-weighted MRI data from 18 colorectal liver metastasis patients were analyzed using an AI-enabled decision support tool that enables non-radiology trained technicians to perform key liver measurements. Three non-radiologist, experienced operators and three radiologists performed whole liver segmentation, Couinaud segment segmentation, and the detection and measurements of lesions aided by AI-generated delineations. Agreement between radiologists and non-radiologists was assessed using the intraclass correlation coefficient (ICC). Two additional radiologists adjudicated any lesion detection discrepancies. Results: Whole liver volume showed high levels of agreement between the non-radiologist and radiologist groups (ICC = 0.99). The Couinaud segment volumetry ICC range was 0.77–0.96. Both groups identified the same 41 lesions. As well, the non-radiologist group identified seven more structures which were also confirmed as lesions by the adjudicators. Lesion diameter categorization agreement was 90%, Couinaud localization 91.9%. Within-group variability was comparable for lesion measurements. Conclusion: With AI assistance, non-radiologist experienced operators showed good agreement with radiologists for quantifying whole liver volume, Couinaud segment volume, and the detection and measurement of lesions in patients with known liver cancer. This AI-assisted non-radiologist approach has potential to reduce the stress on radiologists without compromising accuracy. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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7. A Review of Advancements and Challenges in Liver Segmentation.
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Wei, Di, Jiang, Yundan, Zhou, Xuhui, Wu, Di, and Feng, Xiaorong
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CONVOLUTIONAL neural networks ,DEEP learning ,COMPUTER-assisted image analysis (Medicine) ,DIAGNOSTIC imaging ,IMAGE segmentation - Abstract
Liver segmentation technologies play vital roles in clinical diagnosis, disease monitoring, and surgical planning due to the complex anatomical structure and physiological functions of the liver. This paper provides a comprehensive review of the developments, challenges, and future directions in liver segmentation technology. We systematically analyzed high-quality research published between 2014 and 2024, focusing on liver segmentation methods, public datasets, and evaluation metrics. This review highlights the transition from manual to semi-automatic and fully automatic segmentation methods, describes the capabilities and limitations of available technologies, and provides future outlooks. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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8. Transformer Skip‐Fusion Based SwinUNet for Liver Segmentation From CT Images.
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Kumar, S. S. and Vinod Kumar, R. S.
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TRANSFORMER models , *LIVER disease diagnosis , *DEEP learning , *IMAGE analysis , *COMPUTED tomography - Abstract
Liver segmentation is a crucial step in medical image analysis and is essential for diagnosing and treating liver diseases. However, manual segmentation is time‐consuming and subject to variability among observers. To address these challenges, a novel liver segmentation approach, SwinUNet with transformer skip‐fusion is proposed. This method harnesses the Swin Transformer's capacity to model long‐range dependencies efficiently, the U‐Net's ability to preserve fine spatial details, and the transformer skip‐fusion's effectiveness in enabling the decoder to learn intricate features from encoder feature maps. In experiments using the 3DIRCADb and CHAOS datasets, this technique outperformed traditional CNN‐based methods, achieving a mean DICE coefficient of 0.988% and a mean Jaccard coefficient of 0.973% by aggregating the results obtained from each dataset, signifying outstanding agreement with ground truth. This remarkable accuracy in liver segmentation holds significant promise for improving liver disease diagnosis and enhancing healthcare outcomes for patients with liver conditions. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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9. Dual Attention-Based 3D U-Net Liver Segmentation Algorithm on CT Images.
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Zhang, Benyue, Qiu, Shi, and Liang, Ting
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COMPUTED tomography , *ARTIFICIAL intelligence , *FEATURE extraction , *HUMAN body , *ORGANS (Anatomy) - Abstract
The liver is a vital organ in the human body, and CT images can intuitively display its morphology. Physicians rely on liver CT images to observe its anatomical structure and areas of pathology, providing evidence for clinical diagnosis and treatment planning. To assist physicians in making accurate judgments, artificial intelligence techniques are adopted. Addressing the limitations of existing methods in liver CT image segmentation, such as weak contextual analysis and semantic information loss, we propose a novel Dual Attention-Based 3D U-Net liver segmentation algorithm on CT images. The innovations of our approach are summarized as follows: (1) We improve the 3D U-Net network by introducing residual connections to better capture multi-scale information and alleviate semantic information loss. (2) We propose the DA-Block encoder structure to enhance feature extraction capability. (3) We introduce the CBAM module into skip connections to optimize feature transmission in the encoder, reducing semantic gaps and achieving accurate liver segmentation. To validate the effectiveness of the algorithm, experiments were conducted on the LiTS dataset. The results showed that the Dice coefficient and HD95 index for liver images were 92.56% and 28.09 mm, respectively, representing an improvement of 0.84% and a reduction of 2.45 mm compared to 3D Res-UNet. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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10. PB-FELTuCS: Patch-Based Filtering for Enhanced Liver Tumor Classification and Segmentation
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Sharma, Bheeshm, Balamurugan, P., Angrisani, Leopoldo, Series Editor, Arteaga, Marco, Series Editor, Chakraborty, Samarjit, Series Editor, Chen, Jiming, Series Editor, Chen, Shanben, Series Editor, Chen, Tan Kay, Series Editor, Dillmann, Rüdiger, Series Editor, Duan, Haibin, Series Editor, Ferrari, Gianluigi, Series Editor, Ferre, Manuel, Series Editor, Jabbari, Faryar, Series Editor, Jia, Limin, Series Editor, Kacprzyk, Janusz, Series Editor, Khamis, Alaa, Series Editor, Kroeger, Torsten, Series Editor, Li, Yong, Series Editor, Liang, Qilian, Series Editor, Martín, Ferran, Series Editor, Ming, Tan Cher, Series Editor, Minker, Wolfgang, Series Editor, Misra, Pradeep, Series Editor, Mukhopadhyay, Subhas, Series Editor, Ning, Cun-Zheng, Series Editor, Nishida, Toyoaki, Series Editor, Oneto, Luca, Series Editor, Panigrahi, Bijaya Ketan, Series Editor, Pascucci, Federica, Series Editor, Qin, Yong, Series Editor, Seng, Gan Woon, Series Editor, Speidel, Joachim, Series Editor, Veiga, Germano, Series Editor, Wu, Haitao, Series Editor, Zamboni, Walter, Series Editor, Tan, Kay Chen, Series Editor, Su, Ruidan, editor, Zhang, Yu-Dong, editor, and Frangi, Alejandro F., editor
- Published
- 2024
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11. Liver Segmentation with MT-UNet++
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Yang, Sijing, Sun, Peng, Liang, Yongbo, Song, Xin, Chen, Zhencheng, Magjarević, Ratko, Series Editor, Ładyżyński, Piotr, Associate Editor, Ibrahim, Fatimah, Associate Editor, Lackovic, Igor, Associate Editor, Rock, Emilio Sacristan, Associate Editor, Wang, Guangzhi, editor, Yao, Dezhong, editor, Gu, Zhongze, editor, Peng, Yi, editor, Tong, Shanbao, editor, and Liu, Chengyu, editor
- Published
- 2024
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12. Cross-Modality Deep Transfer Learning: Application to Liver Segmentation in CT and MRI
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Bibars, Merna, Salah, Peter E., Eldeib, Ayman, Elattar, Mustafa A., Yassine, Inas A., Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Waiter, Gordon, editor, Lambrou, Tryphon, editor, Leontidis, Georgios, editor, Oren, Nir, editor, Morris, Teresa, editor, and Gordon, Sharon, editor
- Published
- 2024
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13. MR-Unet: Modified Recurrent Unet for Medical Image Segmentation
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Tran, Song-Toan, Cheng, Ching-Hwa, Liu, Don-Gey, Cao, Phuong-Thao, Pham, Tan-Hung, Filipe, Joaquim, Editorial Board Member, Ghosh, Ashish, Editorial Board Member, Prates, Raquel Oliveira, Editorial Board Member, Zhou, Lizhu, Editorial Board Member, Thai-Nghe, Nguyen, editor, Do, Thanh-Nghi, editor, and Haddawy, Peter, editor
- Published
- 2024
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14. Automatic Diagnosis of Hepatocellular Carcinoma and Metastases Based on Computed Tomography Images
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Zossou, Vincent-Béni Sèna, Rodrigue Gnangnon, Freddy Houéhanou, Biaou, Olivier, de Vathaire, Florent, Allodji, Rodrigue S., and Ezin, Eugène C.
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- 2024
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15. Semi‐supervised liver segmentation based on local regions self‐supervision.
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Lou, Qiong, Lin, Tingyi, Qian, Yaguan, and Lu, Fang
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SUPERVISED learning , *UNCERTAINTY (Information theory) , *IMAGE segmentation , *LIVER , *COMPUTED tomography , *IMAGE representation - Abstract
Background: Semi‐supervised learning has gained popularity in medical image segmentation due to its ability to reduce reliance on image annotation. A typical approach in semi‐supervised learning is to select reliable predictions as pseudo‐labels and eliminate unreliable predictions. Contrastive learning helps prevent the insufficient utilization of unreliable predictions, but neglecting the anatomical structure of medical images can lead to suboptimal optimization results. Purpose: We propose a novel approach for semi‐supervised liver segmentation using contrastive learning, which leverages unlabeled data and enhances the suitability of contrastive learning for liver segmentation. Method and materials: Contrastive learning helps prevent the inappropriate utilization of unreliable predictions, but neglecting the anatomical structure of medical images can lead to suboptimal optimization results. Therefore, we propose a semi‐supervised contrastive learning method with local regions self‐supervision (LRS2). On one side, we employ Shannon entropy to distinguish between reliable and unreliable predictions and reduce the dissimilarity between their representations within regional artificial units. Within each unit of the liver image, we strongly encourage unreliable predictions to acquire valuable information pertaining to the correct category by leveraging the representations of reliable predictions in their vicinity. On the other side, we introduce a dynamic reliability threshold based on the Shannon entropy of each prediction, gradually evaluating the confidence threshold of reliable predictions as predictive accuracy improves. After selecting reliable predictions, we sequentially apply erosion and dilation to refine them for better selection of qualified positive and negative samples. We evaluate our proposed method on abdominal CT images, including 131 images (train data: 77, validation data: 26, and testing data: 28) from 2017 ISBI Liver Tumors Segmentation Challenge. Results: Our method obtains satisfactory performance in different proportion by exploiting the unreliable predictions. Compared with the result of VNet only under supervised settings (with 10, 30, 50, 70% and full labeled data), LRS2, respectively, brings an improvement of Dice coefficient by +6.11, +3.55, +4.43, and +2.25%, achieving Dice coefficients of 93.44, 93.31, 94.85, and 95.12%, respectively. Conclusion: In this study, we carefully select appropriate positive and negative samples from reliable regions, ensuring that anchor pixels within unreliable regions are correctly assigned to their respective categories. With a consideration of the anatomical structure present in CT images, we partition the image representations into regional units, enabling anchor pixels to capture more precise sample information. Extensive experiments confirm the effectiveness of our method. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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16. Algorithms for Liver Segmentation in Computed Tomography Scans: A Historical Perspective.
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Niño, Stephanie Batista, Bernardino, Jorge, and Domingues, Inês
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COMPUTED tomography , *IMAGE processing , *COMPUTER-assisted image analysis (Medicine) , *ARTIFICIAL intelligence , *ALGORITHMS , *IMAGE reconstruction algorithms - Abstract
Oncology has emerged as a crucial field of study in the domain of medicine. Computed tomography has gained widespread adoption as a radiological modality for the identification and characterisation of pathologies, particularly in oncology, enabling precise identification of affected organs and tissues. However, achieving accurate liver segmentation in computed tomography scans remains a challenge due to the presence of artefacts and the varying densities of soft tissues and adjacent organs. This paper compares artificial intelligence algorithms and traditional medical image processing techniques to assist radiologists in liver segmentation in computed tomography scans and evaluates their accuracy and efficiency. Despite notable progress in the field, the limited availability of public datasets remains a significant barrier to broad participation in research studies and replication of methodologies. Future directions should focus on increasing the accessibility of public datasets, establishing standardised evaluation metrics, and advancing the development of three-dimensional segmentation techniques. In addition, maintaining a collaborative relationship between technological advances and medical expertise is essential to ensure that these innovations not only achieve technical accuracy, but also remain aligned with clinical needs and realities. This synergy ensures their applicability and effectiveness in real-world healthcare environments. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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17. Morph-Rec: A Novel Computer-Aided Liver Segmentation Model based on Morphological Reconstruction Operation.
- Author
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Nithiyaraj E, Emerson and Selvaraj, Arivazhagan
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GALLBLADDER , *BILIARY tract , *LIVER , *COMPUTED tomography , *IMAGE processing , *COMPUTER-aided diagnosis - Abstract
An abdominal Computed Tomography (CT) scan gives more information about diseases of the liver, gallbladder, and biliary tract. In the image processing approach, liver segmentation is an essential step to be done before liver lesion detection. Liver segmentation removes the unwanted regions from the CT image and makes the task of lesion detection easier. In this paper, a novel Morph-Rec model based on morphological reconstruction operation is proposed for liver segmentation from CT images. The proposed work is focused on segmenting the liver region from the CT slices irrespective of the size and shape of the liver region. The proposed model is validated on 2650 CT slices of 120 and 20 CT scans from the LITS and 3DIRCADb datasets, respectively. The proposed Morph-Rec method is evaluated using metrics such as dice score, accuracy, F1 score, Jaccard index and Matthew's correlation coefficient. To justify the adaptability and efficiency of the proposed model, it is also validated on 50 CT slices of nine CT scans provided by a local scan centre. The proposed method has produced excellent results on all metrics and the obtained results are better than the state-of-the-art conventional methods for liver segmentation. Hence, the proposed technique is an automatic and dataset-generic model that can perform liver segmentation precisely on any CT acquisition of the liver. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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18. A Reference Interval for CT-Based Liver Volume in Dogs without Hepatic Disease
- Author
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Reo Nishi, George Moore, and Masahiro Murakami
- Subjects
liver size ,hepatic volume ,canine liver disease ,liver segmentation ,Veterinary medicine ,SF600-1100 - Abstract
In both human and veterinary medicine, computed tomography (CT) volumetry provides a quantitative and accurate measure of liver volume. While CT volumetry is recognized as a useful method for assessing liver volume in dogs, a statistically significant reference interval for liver volume in dogs with no history of hepatic disease has not been reported. The purpose of the present study was to define a reference interval for liver volume with no history of hepatic disease using CT volumetry. Medical records from 2 June 2020 to 25 July 2022 were retrospectively reviewed, including 121 dogs that underwent abdominal CT scans and had no history of hepatic disease. Liver volumes were measured using CT volumetry and normalized by body weight. The median of normalized CT-based liver volume in 121 dogs was 22.2 cm3/kg. Based on these data, a weight-based reference interval lower limit of 11.1–15.5 (90% confidence interval [CI]) to an upper limit of 31.9–42.6 (90% CI) cm3/kg for CT-based liver volume was defined in dogs without hepatic disease. This study provides an accurate assessment of liver volume changes in dogs with various hepatic diseases.
- Published
- 2024
- Full Text
- View/download PDF
19. Accurate artificial intelligence method for abnormality detection of CT liver images.
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Rani, R.M., Dwarakanath, B., Kathiravan, M., Murugesan, S., Bharathiraja, N., and Vinoth Kumar, M.
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CONVOLUTIONAL neural networks , *ARTIFICIAL intelligence , *COMPUTED tomography , *RECURRENT neural networks , *LIVER tumors - Abstract
Liver cancer is a leading cause of death worldwide and poses a significant challenge to physicians in terms of accurate diagnosis and treatment. AI-powered segmentation and classification algorithms can play a vital role in assisting physicians in detecting and diagnosing liver tumors. However, liver tumor classification is a difficult task due to factors such as noise, non-homogeneity, and significant appearance variations in cancerous tissue. In this study, we propose a novel approach to automatically segmenting and classifying liver tumors. Our proposed framework comprises three main components: a preprocessing unit to enhance picture contrast, a Masked Recurrent Convolutional Neural Network (RCNN) for liver segmentation, and a pixel-wise classification unit for identifying abnormalities in the liver. When our models are applied to the challenging MICCAI'2027 liver tumor segmentation (LITS) database, we achieve Dice similarity coefficients of 96% and 98% for liver segmentation and lesion identification, respectively. We also demonstrate the efficiency of our proposed framework by comparing it with similar strategies for tumor segmentations. The proposed approach achieved high accuracy, sensitivity, specificity, and F1 score parameters for liver segmentation and lesion identification. These results were evaluated using the Dice similarity coefficient and compared with similar strategies for tumor segmentation. Our approach holds promise for improving the accuracy and speed of liver tumor detection and diagnosis, which could have significant implications for patient outcomes. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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20. Sd-net: a semi-supervised double-cooperative network for liver segmentation from computed tomography (CT) images.
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Huang, Shixin, Luo, Jiawei, Ou, Yangning, shen, Wangjun, Pang, Yu, Nie, Xixi, and Zhang, Guo
- Abstract
Introduction: The automatic segmentation of the liver is a crucial step in obtaining quantitative biomarkers for accurate clinical diagnosis and computer-aided decision support systems. This task is challenging due to the frequent presence of noise and sampling artifacts in computerized tomography (CT) images, as well as the complex background, variable shapes, and blurry boundaries of the liver. Standard segmentation of medical images based on full-supervised convolutional networks demands accurate dense annotations. Such a learning framework is built on laborious manual annotation with strict requirements for expertise, leading to insufficient high-quality labels. Methods: To overcome such limitation and exploit massive weakly labeled data, we relaxed the rigid labeling requirement and developed a semi-supervised double-cooperative network (SD- Net). SD-Net is trained to segment the complete liver volume from preoperative abdominal CT images by using limited labeled datasets and large-scale unlabeled datasets. Specifically, to enrich the diversity of unsupervised information, we construct SD-Net consisting of two collaborative network models. Within the supervised training module, we introduce an adaptive mask refinement approach. First, each of the two network models predicts the labeled dataset, after which adaptive mask refinement of the difference predictions is implemented to obtain more accurate liver segmentation results. In the unsupervised training module, a dynamic pseudo-label generation strategy is proposed. First each of the two models predicts unlabeled data and the better prediction is considered as pseudo-labeling before training. Results and discussion: Based on the experimental findings, the proposed method achieves a dice score exceeding 94%, indicating its high level of accuracy and its suitability for everyday clinical use. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
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21. Unified automated deep learning framework for segmentation and classification of liver tumors.
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Saumiya, S. and Franklin, S. Wilfred
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LIVER tumors , *DEEP learning , *SECONDARY primary cancer , *TUMOR classification , *AUTOMATIC classification , *LIVER cancer - Abstract
Cancer is a devastating and deadly disease, and liver cancer is one of the leading causes of cancer deaths. Early detection of liver tumor is important to choose a treatment plan, get an accurate prognosis, and gain a deep understanding of the tumor to determine its severity. Despite a lot of research, performing automatic segmentation and classification liver tumor is still a challenging task due to the low tissue contrast between the surrounding organs and the deformable shape of the CT image. Therefore, this paper introduces the unified learning multi-task model network for combined automatic liver tumor segmentation and classification. The first step is to build a multi-task deformable attention U-Net (MDAUnet) technique to segment the liver tumor and capture the features for classification. Here, an attention-based deformable module is used instead of convolution to learn the irregular and inconspicuous appearance of tumors by combining context attention and deformable convolution. Further, a residual skip connection is used to avoid duplicate transmission of low-resolution data by introducing a residual path. In the second step, the segmented liver tumor features from MDAUnet are fed into the deep DenseNet (DDNet) model and concatenation layer. Based on the segmented liver tumor features, DDNet learns distinguishable features for classification. The concatenation layer combines the learned features of the MDAUnet and DDNet models for liver tumor classification. Finally, a fully connected layer classifies primary and secondary liver tumors. Therefore, our proposed ULM-net model outperforms single models in terms of precision, F-1 measure, recall, classification accuracy, and kappa coefficient. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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22. Přesnost a efektivita poloautomatických segmentačních programů pro stanovení objemu jater z MR snímků.
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Kordač, Petr, Šetinová, Bára, Pajuelo, Dita, Dezortová, Monika, Kovář, Jan, Rossmeislová, Lenka, Šiklová, Michaela, Hájek, Milan, and Šedivý, Petr
- Abstract
Aim: To evaluate various segmentation software for liver segmentation from MR images. Method: Three MR examinations were performed on seven healthy volunteers (average age 38.2 ± 5.5 years, BMI = 28.6 ± 8.3 kg/m²) without known liver or cholestatic diseases -- before initiating fasting, after 48 hours of fasting, and after subsequent twoday carbohydrate realimentation. The livers were segmented using seven (semi)automatic methods of software 3D Slicer, LiverLab, ITKSNAP, Myrian and MedSeg and compared to the reference manual segmentation. Results: All methods used for liver volume determination showed good accuracy. Intraclass coefficients of consistency and agreement were above 0.95. The TotalSegmentator module in the 3D Slicer program achieved the best coefficient of variation (CV), and also demonstrated the highest accuracy in the individual assessment of the dietary intervention effect, with an average CV below 10% (other methods ranged from 10-20%). Conclusion: 3D Slicer can be considered the best among all the tested segmentation software for liver segmentation from MR images in terms of program availability, accuracy, and speed. In basic tasks such as organ segmentation, it can compete with commercial software. It can accurately track liver volume changes during short-term dietary interventions. [ABSTRACT FROM AUTHOR]
- Published
- 2023
23. A Review of Advancements and Challenges in Liver Segmentation
- Author
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Di Wei, Yundan Jiang, Xuhui Zhou, Di Wu, and Xiaorong Feng
- Subjects
liver segmentation ,medical imaging ,deep learning ,convolutional neural networks ,fully ,convolutional networks ,Photography ,TR1-1050 ,Computer applications to medicine. Medical informatics ,R858-859.7 ,Electronic computers. Computer science ,QA75.5-76.95 - Abstract
Liver segmentation technologies play vital roles in clinical diagnosis, disease monitoring, and surgical planning due to the complex anatomical structure and physiological functions of the liver. This paper provides a comprehensive review of the developments, challenges, and future directions in liver segmentation technology. We systematically analyzed high-quality research published between 2014 and 2024, focusing on liver segmentation methods, public datasets, and evaluation metrics. This review highlights the transition from manual to semi-automatic and fully automatic segmentation methods, describes the capabilities and limitations of available technologies, and provides future outlooks.
- Published
- 2024
- Full Text
- View/download PDF
24. Dual Attention-Based 3D U-Net Liver Segmentation Algorithm on CT Images
- Author
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Benyue Zhang, Shi Qiu, and Ting Liang
- Subjects
dual attention mechanisms ,residual connection ,3D U-Net ,CT ,liver segmentation ,Technology ,Biology (General) ,QH301-705.5 - Abstract
The liver is a vital organ in the human body, and CT images can intuitively display its morphology. Physicians rely on liver CT images to observe its anatomical structure and areas of pathology, providing evidence for clinical diagnosis and treatment planning. To assist physicians in making accurate judgments, artificial intelligence techniques are adopted. Addressing the limitations of existing methods in liver CT image segmentation, such as weak contextual analysis and semantic information loss, we propose a novel Dual Attention-Based 3D U-Net liver segmentation algorithm on CT images. The innovations of our approach are summarized as follows: (1) We improve the 3D U-Net network by introducing residual connections to better capture multi-scale information and alleviate semantic information loss. (2) We propose the DA-Block encoder structure to enhance feature extraction capability. (3) We introduce the CBAM module into skip connections to optimize feature transmission in the encoder, reducing semantic gaps and achieving accurate liver segmentation. To validate the effectiveness of the algorithm, experiments were conducted on the LiTS dataset. The results showed that the Dice coefficient and HD95 index for liver images were 92.56% and 28.09 mm, respectively, representing an improvement of 0.84% and a reduction of 2.45 mm compared to 3D Res-UNet.
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- 2024
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25. Liver Tracking for Intraoperative Augmented Reality Navigation System
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Dašić, Lazar, Kacprzyk, Janusz, Series Editor, Gomide, Fernando, Advisory Editor, Kaynak, Okyay, Advisory Editor, Liu, Derong, Advisory Editor, Pedrycz, Witold, Advisory Editor, Polycarpou, Marios M., Advisory Editor, Rudas, Imre J., Advisory Editor, Wang, Jun, Advisory Editor, and Filipovic, Nenad, editor
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- 2023
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26. Automatic liver segmentation using U-Net deep learning architecture for additive manufacturing
- Author
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Giri, Jayant, Sathish, T., Sheikh, Taukeer, Sunheriya, Neeraj, Giri, Pallavi, Chadge, Rajkumar, Mahatme, Chetan, and Parthiban, A.
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- 2024
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27. LiverHccSeg: A publicly available multiphasic MRI dataset with liver and HCC tumor segmentations and inter-rater agreement analysis
- Author
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Moritz Gross, Sandeep Arora, Steffen Huber, Ahmet S. Kücükkaya, and John A. Onofrey
- Subjects
Liver segmentation ,Tumor segmentation ,Hepatocellular carcinoma ,Inter-rater agreement ,Inter-rater variability ,Multiphasic contrast-enhanced magnetic resonance imaging ,Computer applications to medicine. Medical informatics ,R858-859.7 ,Science (General) ,Q1-390 - Abstract
Accurate segmentation of liver and tumor regions in medical imaging is crucial for the diagnosis, treatment, and monitoring of hepatocellular carcinoma (HCC) patients. However, manual segmentation is time-consuming and subject to inter- and intra-rater variability. Therefore, automated methods are necessary but require rigorous validation of high-quality segmentations based on a consensus of raters. To address the need for reliable and comprehensive data in this domain, we present LiverHccSeg, a dataset that provides liver and tumor segmentations on multiphasic contrast-enhanced magnetic resonance imaging from two board-approved abdominal radiologists, along with an analysis of inter-rater agreement.LiverHccSeg provides a curated resource for liver and HCC tumor segmentation tasks. The dataset includes a scientific reading and co-registered contrast-enhanced multiphasic magnetic resonance imaging (MRI) scans with corresponding manual segmentations by two board-approved abdominal radiologists and relevant metadata and offers researchers a comprehensive foundation for external validation, and benchmarking of liver and tumor segmentation algorithms. The dataset also provides an analysis of the agreement between the two sets of liver and tumor segmentations. Through the calculation of appropriate segmentation metrics, we provide insights into the consistency and variability in liver and tumor segmentations among the radiologists. A total of 17 cases were included for liver segmentation and 14 cases for HCC tumor segmentation. Liver segmentations demonstrates high segmentation agreement (mean Dice, 0.95 ± 0.01 [standard deviation]) and HCC tumor segmentations showed higher variation (mean Dice, 0.85 ± 0.16 [standard deviation]).The applications of LiverHccSeg can be manifold, ranging from testing machine learning algorithms on public external data to radiomic feature analyses. Leveraging the inter-rater agreement analysis within the dataset, researchers can investigate the impact of variability on segmentation performance and explore methods to enhance the accuracy and robustness of liver and tumor segmentation algorithms in HCC patients. By making this dataset publicly available, LiverHccSeg aims to foster collaborations, facilitate innovative solutions, and ultimately improve patient outcomes in the diagnosis and treatment of HCC.
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- 2023
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28. Liver segmentation based on complementary features U-Net.
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Sun, Junding, Hui, Zhenkun, Tang, Chaosheng, and Wu, Xiaosheng
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- *
LIVER , *COMPUTED tomography , *LIVER cancer , *LIVER biopsy , *LIVER cells - Abstract
Automatic segmentation of the liver in abdominal CT images is critical for guiding liver cancer biopsies and treatment planning. Yet, automatic segmentation of CT liver images remains challenging due to the poor contrast between the liver and surrounding organs in abdominal CT images. In this paper, we propose a novel network for liver segmentation, and the network is essentially a U-shaped network with an encoder–decoder structure. Firstly, the complementary feature enhancement unit is designed in the network to mitigate the semantic gap between encoder and decoder. The complementary feature enhancement unit is based on subtraction, which enhances the complementary features between encoder and decoder. Secondly, this paper proposes a new cross attention model that no longer generates value by convolution, which reduces redundant information and enhances the contextual information of single sparse attention by encoding contextual information by 3 × 3 convolution. The dice score, accuracy, and precision of our network on the LiTS dataset were 95.85 % , 97.19 % , and 97.11 % , and the dice score, accuracy, and precision on the dataset consisted of 3Dircadb and CHAOS were 93.65 % , 94.38 % , and 97.53 % . [ABSTRACT FROM AUTHOR]
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- 2023
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29. An Improved Expectation-Maximization Algorithm to Detect Liver Image Boundary in CT Scan Images.
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Siri, Sangeeta K., Kumar S., Pramod, and V. Latte, Mrityunjaya
- Subjects
- *
COMPUTED tomography , *COMPUTER-aided diagnosis , *LIVER , *EXPECTATION-maximization algorithms , *DIAGNOSIS - Abstract
Liver segmentation is a prolific and important area of research that has been deeply studied for the last three decades. Its prominence is increasing in modern Computer-Aided disease Diagnosis (CAD) to deal with a huge amount of images. In this paper, the CT scan image is resized to 256 X 256, and noise is reduced by a median filter, and then local peaks are acquired. The optimal clusters (k) to be formed by Expectation-Maximization (EM) algorithm are obtained by setting the distance between local peaks and height greater than 5. Formulate k number of clusters using the EM algorithm. Crop random section of liver and obtain all the local peaks greater than average of local peaks. This provides the minimum and maximum threshold values using which a threshold-based segmentation is performed. The anticipated algorithm that is verified on 55 CT scan images offers promising results. The experimental outcomes are compared with the existing cluster-based liver segmentation algorithms. [ABSTRACT FROM AUTHOR]
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- 2023
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30. Residual Deformable Split Channel and Spatial U-Net for Automated Liver and Liver Tumour Segmentation.
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Saumiya, S and Franklin, S Wilfred
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DIGITAL image processing ,DEEP learning ,LIVER tumors ,DIAGNOSTIC imaging ,COMPUTED tomography ,ARTIFICIAL neural networks ,DIGITAL diagnostic imaging ,ALGORITHMS - Abstract
Accurate segmentation of the liver and liver tumour (LT) is challenging due to its hazy boundaries and large shape variability. Although using U-Net for liver and LT segmentation achieves better results than manual segmentation, it loses spatial and channel features during segmentation, leading to inaccurate liver and LT segmentation. A residual deformable split depth-wise separable U-Net (RDSDSU-Net) is proposed to increase the accuracy of liver and LT segmentation. The residual deformable convolution layer (DCL) with deformable pooling (DP) is used in the encoder as an attention mechanism to adaptively extract liver and LT shape and position characteristics. Afterward, a convolutional spatial and channel features split graph network (CSCFSG-Net) is introduced in the middle processing layer to improve the expression capability of the liver and LT features by capturing spatial and channel features separately and to extract global contextual liver and LT information from spatial and channel features. Sub-pixel convolutions (SPC) are used in the decoder section to prevent the segmentation results from having a chequerboard artefact effect. Also, the residual deformable encoder features are combined with the decoder through summation to avoid increasing the number of feature maps (FM). Finally, the efficiency of the RDSDSU-Net is evaluated on the 3DIRCADb and LiTS datasets. The DICE score of the proposed RDSDSU-Net achieved 98.21% for liver segmentation and 93.25% for LT segmentation on 3DIRCADb. The experimental outcomes illustrate that the proposed RDSDSU-Net model achieved better segmentation results than the existing techniques. [ABSTRACT FROM AUTHOR]
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- 2023
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31. Automatic Liver Tumor Segmentation from CT Images Using Graph Convolutional Network.
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Khoshkhabar, Maryam, Meshgini, Saeed, Afrouzian, Reza, and Danishvar, Sebelan
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- *
LIVER tumors , *COMPUTED tomography , *ORGANS (Anatomy) , *MACHINE learning , *DIAGNOSIS , *LIGHT intensity - Abstract
Segmenting the liver and liver tumors in computed tomography (CT) images is an important step toward quantifiable biomarkers for a computer-aided decision-making system and precise medical diagnosis. Radiologists and specialized physicians use CT images to diagnose and classify liver organs and tumors. Because these organs have similar characteristics in form, texture, and light intensity values, other internal organs such as the heart, spleen, stomach, and kidneys confuse visual recognition of the liver and tumor division. Furthermore, visual identification of liver tumors is time-consuming, complicated, and error-prone, and incorrect diagnosis and segmentation can hurt the patient's life. Many automatic and semi-automatic methods based on machine learning algorithms have recently been suggested for liver organ recognition and tumor segmentation. However, there are still difficulties due to poor recognition precision and speed and a lack of dependability. This paper presents a novel deep learning-based technique for segmenting liver tumors and identifying liver organs in computed tomography maps. Based on the LiTS17 database, the suggested technique comprises four Chebyshev graph convolution layers and a fully connected layer that can accurately segment the liver and liver tumors. Thus, the accuracy, Dice coefficient, mean IoU, sensitivity, precision, and recall obtained based on the proposed method according to the LiTS17 dataset are around 99.1%, 91.1%, 90.8%, 99.4%, 99.4%, and 91.2%, respectively. In addition, the effectiveness of the proposed method was evaluated in a noisy environment, and the proposed network could withstand a wide range of environmental signal-to-noise ratios (SNRs). Thus, at SNR = −4 dB, the accuracy of the proposed method for liver organ segmentation remained around 90%. The proposed model has obtained satisfactory and favorable results compared to previous research. According to the positive results, the proposed model is expected to be used to assist radiologists and specialist doctors in the near future. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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- View/download PDF
32. Dual‐ and triple‐stream RESUNET/UNET architectures for multi‐modal liver segmentation
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Hagar Louye Elghazy and Mohamed Waleed Fakhr
- Subjects
liver segmentation ,medical image segmentation ,multiple‐stream ,UNET ,Photography ,TR1-1050 ,Computer software ,QA76.75-76.765 - Abstract
Abstract Deep learning image segmentation has become an important field of interest in recent years, especially when it comes to medical images. Segmentation of medical image modalities such as magnetic resonance imaging (MRI) and computed tomography (CT) can benefit diagnosis accuracy, speed up diagnosis process, and decrease workload. The most famously used deep learning models in the medical image segmentation are the UNET‐based models, which have been repeatedly proven to provide a high percentage of accuracy in medical image segmentation. But, most of the available datasets contain a single modality and thus are not big enough to train complex architectures. Lately, it has been shown that using multiple modalities with multiple streams architectures can provide higher accuracy more than single modality with a single stream architecture. In this paper, the benefits of dual‐stream and triple‐stream architectures are demonstrated when processing multiple modalities. This work shows that dual stream can achieve dice of 0.97 on CT images and 0.89 on MRI images, while in triple stream architectures can achieve dice of 0.97 on CT images and 0.96 on MRI images. To the best of our knowledge, these are the best results to date.
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- 2023
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33. Algorithms for Liver Segmentation in Computed Tomography Scans: A Historical Perspective
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Stephanie Batista Niño, Jorge Bernardino, and Inês Domingues
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artificial intelligence ,computed tomography ,hepatic pathologies ,liver segmentation ,Chemical technology ,TP1-1185 - Abstract
Oncology has emerged as a crucial field of study in the domain of medicine. Computed tomography has gained widespread adoption as a radiological modality for the identification and characterisation of pathologies, particularly in oncology, enabling precise identification of affected organs and tissues. However, achieving accurate liver segmentation in computed tomography scans remains a challenge due to the presence of artefacts and the varying densities of soft tissues and adjacent organs. This paper compares artificial intelligence algorithms and traditional medical image processing techniques to assist radiologists in liver segmentation in computed tomography scans and evaluates their accuracy and efficiency. Despite notable progress in the field, the limited availability of public datasets remains a significant barrier to broad participation in research studies and replication of methodologies. Future directions should focus on increasing the accessibility of public datasets, establishing standardised evaluation metrics, and advancing the development of three-dimensional segmentation techniques. In addition, maintaining a collaborative relationship between technological advances and medical expertise is essential to ensure that these innovations not only achieve technical accuracy, but also remain aligned with clinical needs and realities. This synergy ensures their applicability and effectiveness in real-world healthcare environments.
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- 2024
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34. A Boundary-Enhanced Liver Segmentation Network for Multi-Phase CT Images with Unsupervised Domain Adaptation.
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Ananda, Swathi, Jain, Rahul Kumar, Li, Yinhao, Iwamoto, Yutaro, Han, Xian-Hua, Kanasaki, Shuzo, Hu, Hongjie, and Chen, Yen-Wei
- Subjects
- *
COMPUTED tomography , *IMAGE segmentation , *LIVER tumors , *LABOR time , *DIAGNOSIS , *PHYSIOLOGICAL adaptation - Abstract
Multi-phase computed tomography (CT) images have gained significant popularity in the diagnosis of hepatic disease. There are several challenges in the liver segmentation of multi-phase CT images. (1) Annotation: due to the distinct contrast enhancements observed in different phases (i.e., each phase is considered a different domain), annotating all phase images in multi-phase CT images for liver or tumor segmentation is a task that consumes substantial time and labor resources. (2) Poor contrast: some phase images may have poor contrast, making it difficult to distinguish the liver boundary. In this paper, we propose a boundary-enhanced liver segmentation network for multi-phase CT images with unsupervised domain adaptation. The first contribution is that we propose DD-UDA, a dual discriminator-based unsupervised domain adaptation, for liver segmentation on multi-phase images without multi-phase annotations, effectively tackling the annotation problem. To improve accuracy by reducing distribution differences between the source and target domains, we perform domain adaptation at two levels by employing two discriminators, one at the feature level and the other at the output level. The second contribution is that we introduce an additional boundary-enhanced decoder to the encoder–decoder backbone segmentation network to effectively recognize the boundary region, thereby addressing the problem of poor contrast. In our study, we employ the public LiTS dataset as the source domain and our private MPCT-FLLs dataset as the target domain. The experimental findings validate the efficacy of our proposed methods, producing substantially improved results when tested on each phase of the multi-phase CT image even without the multi-phase annotations. As evaluated on the MPCT-FLLs dataset, the existing baseline (UDA) method achieved IoU scores of 0.785, 0.796, and 0.772 for the PV, ART, and NC phases, respectively, while our proposed approach exhibited superior performance, surpassing both the baseline and other state-of-the-art methods. Notably, our method achieved remarkable IoU scores of 0.823, 0.811, and 0.800 for the PV, ART, and NC phases, respectively, emphasizing its effectiveness in achieving accurate image segmentation. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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- View/download PDF
35. Towards liver segmentation in the wild via contrastive distillation.
- Author
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Fogarollo, Stefano, Bale, Reto, and Harders, Matthias
- Abstract
Purpose: Automatic liver segmentation is a key component for performing computer-assisted hepatic procedures. The task is challenging due to the high variability in organ appearance, numerous imaging modalities, and limited availability of labels. Moreover, strong generalization performance is required in real-world scenarios. However, existing supervised methods cannot be applied to data not seen during training (i.e. in the wild) because they generalize poorly. Methods: We propose to distill knowledge from a powerful model with our novel contrastive distillation scheme. We use a pre-trained large neural network to train our smaller model. A key novelty is to map neighboring slices close together in the latent representation, while mapping distant slices far away. Then, we use ground-truth labels to learn a U-Net style upsampling path and recover the segmentation map. Results: The pipeline is proven to be robust enough to perform state-of-the-art inference on target unseen domains. We carried out an extensive experimental validation using six common abdominal datasets, covering multiple modalities, as well as 18 patient datasets from the Innsbruck University Hospital. A sub-second inference time and a data-efficient training pipeline make it possible to scale our method to real-world conditions. Conclusion: We propose a novel contrastive distillation scheme for automatic liver segmentation. A limited set of assumptions and superior performance to state-of-the-art techniques make our method a candidate for application to real-world scenarios. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
36. An integrated 3D-sparse deep belief network with enriched seagull optimization algorithm for liver segmentation.
- Author
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Dickson, Joel, Linsely, Arul, and Nineta, R. J. Alice
- Subjects
- *
METAHEURISTIC algorithms , *GULLS , *COMPUTED tomography - Abstract
Purpose: Liver segmentation is an essential step in a variety of clinical applications like tumor detection, transplantation, and other liver treatments. Even though there is a lot of work carried out, it is still a challenging task to segment a single elliptical liver structure from a roughly distributed similar structure or shape in the abdomen using computerized tomography (CT) images. The existing methods are unable to accurately extract the liver image boundary due to the extraction of low-level features, inaccuracy, and over-fitting. Method: A 3D Sparse Deep Belief Network with Enriched Seagull Optimization (3D-SDBN-ESO) is proposed that extracts the accurate elliptical liver structure. The abdominal CT images are first fed into a preprocessing stage that uses Gaussian filtering and contrast local adaptive histogram equalization in the liver segmentation process. After preprocessing, the proposed 3D-SDBN segments the liver by extracting high-level spatiotemporal features. This model effectively learns high-level contextual knowledge and enhances the performance and network capacity of the model while performing feature representation. However, it is difficult to determine the 3D-SDBN parameters that significantly affect segmentation accuracy and training loss. To solve this problem, the number of hidden nodes, learning rate, and mini batch size of the 3D-SDBN are optimized utilizing Enriched Seagull Optimization (ESO). Moreover, the exact boundary of the liver is determined from the segmented images using Localized Active Contour (LAC) by reducing fuzzy boundary interference. Results: Experimental analysis is conducted with different metrics such as the Dice Coefficient (DI), Jacaard Index (JI), Volumetric Overlap Error (VOE), Overlap Coefficient (OC), Relative Volume Error (RVE), Average Symmetric Surface Distance (ASD), and Dice Similarity Coefficient (DSC) on two publicly available datasets such as the 3Dircadb01 and LITS datasets. The performance of the proposed 3D-SDBN-ESO approach obtains high estimation values of 97.19, 99.73, 99.69, and 96.1 in terms of DI, JI, OC, and DSC on the 3Dircadb01 dataset, respectively. Also, it achieves high estimation results of 96.31, 92.89, 98.02, and 96.6 in terms of DI, JI, OC, and DSC on LITS datasets, respectively. Conclusion: The overall results demonstrate that the proposed 3D-SDBN-ESO accurately segments the liver from abdominal CT images compared to existing methods and solves the challenging problems. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
37. MSAA-Net: a multi-scale attention-aware U-Net is used to segment the liver.
- Author
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Zhang, Lijuan, Liu, Jiajun, Li, Dongming, Liu, Jinyuan, and Liu, Xiangkun
- Abstract
Automatic segmentation of the liver from CT images is a very challenging task because the shape of the liver in the abdominal cavity varies from person to person and it also often fits closely with other organs. In recent years, with the continuous development of deep learning and the proposal of CNN, the neural network-based segmentation models have shown good performance in the field of image segmentation. Among the many network models, U-Net stands out in the task of medical image segmentation. In this paper, we propose a segmentation network MSAA-Net combining multi-scale features and an improved attention-aware U-Net. We extracted features of different scales on a single feature layer and performed attention perception in the channel dimension. We demonstrate that this architecture improves the performance of U-Net, while significantly reducing computational costs. To address the problem that U-Net's skip connection is difficult to optimize for merging objects of different sizes, we designed a multi-scale attention gate structure (MAG), which allows the model to automatically learn to focus on targets of different sizes. In addition, MAG can be extended to all structures which contain skip connections, such as U-Net and FCN variants. Our structure was extensively evaluated on the 3Dircadb dataset, and the DICE similarity coefficient of the method for the liver segmentation task was 94.42%, with a much smaller number of model parameters than other attentional models. The experimental results show that MSAA-Net achieves very competitive performance in liver segmentation. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
38. mfeeU-Net: A multi-scale feature extraction and enhancement U-Net for automatic liver segmentation from CT Images
- Author
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Jun Liu, Zhenhua Yan, Chaochao Zhou, Liren Shao, Yuanyuan Han, and Yusheng Song
- Subjects
liver segmentation ,u-net ,multi-scale ,feature extraction and enhancement ,res2net ,squeeze-and-excitation ,edge attention ,Biotechnology ,TP248.13-248.65 ,Mathematics ,QA1-939 - Abstract
Medical image segmentation of the liver is an important prerequisite for clinical diagnosis and evaluation of liver cancer. For automatic liver segmentation from Computed Tomography (CT) images, we proposed a Multi-scale Feature Extraction and Enhancement U-Net (mfeeU-Net), incorporating Res2Net blocks, Squeeze-and-Excitation (SE) blocks, and Edge Attention (EA) blocks. The Res2Net blocks which are conducive to extracting multi-scale features of the liver were used as the backbone of the encoder, while the SE blocks were also added to the encoder to enhance channel information. The EA blocks were introduced to skip connections between the encoder and the decoder, to facilitate the detection of blurred liver edges where the intensities of nearby organs are close to the liver. The proposed mfeeU-Net was trained and evaluated using a publicly available CT dataset of LiTS2017. The average dice similarity coefficient, intersection-over-union ratio, and sensitivity of the mfeeU-Net for liver segmentation were 95.32%, 91.67%, and 95.53%, respectively, and all these metrics were better than those of U-Net, Res-U-Net, and Attention U-Net. The experimental results demonstrate that the mfeeU-Net can compete with and even outperform recently proposed convolutional neural networks and effectively overcome challenges, such as discontinuous liver regions and fuzzy liver boundaries.
- Published
- 2023
- Full Text
- View/download PDF
39. Automatic Liver Cancer Detection Using Deep Convolution Neural Network
- Author
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Kiran Malhari Napte, Anurag Mahajan, and Shabana Urooj
- Subjects
Biomedical image processing ,computed tomography ,deep learning ,image enhancement ,ALCD ,liver segmentation ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 - Abstract
Automatic liver cancer detection (ALCD) is very crucial in automatic biomedical image analysis and diagnosis as it is the largest organ in the body and plays a significant role in the metabolic process as well as the elimination of toxins. In the last decade, various machine and deep learning schemes have been investigated for automatic ALCD using computed tomography (CT) images. However, ALCD in CT images is challenging because of the noise, intricate structure of abdominal computed tomography (CT) images, and textural changes throughout the CT images making liver segmentation a vital challenge that may result in both under-segmentation (u-seg) and over-segmentation ( o-seg) of the organ. This paper presents liver segmentation based on the proposed Edge Strengthening Parallel UNet (ESP-UNet) for liver segmentation to avoid the u-seg and o-seg of the liver in CT images. Further, it offered ALCD based on lightweight sequential Deep Convolution Neural Networks (DCNN). The consequences of ESP-UNet DCNN-based ALCD are evaluated based on accuracy, recall, precision, and F1-score. The suggested approach provides a noteworthy improvement in ALCD over the traditional state of arts.
- Published
- 2023
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40. Multi-scale attention and deep supervision-based 3D UNet for automatic liver segmentation from CT
- Author
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Jinke Wang, Xiangyang Zhang, Liang Guo, Changfa Shi, and Shinichi Tamura
- Subjects
liver segmentation ,attention ,deep supervision ,ct ,deep learning ,Biotechnology ,TP248.13-248.65 ,Mathematics ,QA1-939 - Abstract
Background: Automatic liver segmentation is a prerequisite for hepatoma treatment; however, the low accuracy and stability hinder its clinical application. To alleviate this limitation, we deeply mine the context information of different scales and combine it with deep supervision to improve the accuracy of liver segmentation in this paper. Methods: We proposed a new network called MAD-UNet for automatic liver segmentation from CT. It is grounded in the 3D UNet and leverages multi-scale attention and deep supervision mechanisms. In the encoder, the downsampling pooling in 3D UNet is replaced by convolution to alleviate the loss of feature information. Meanwhile, the residual module is introduced to avoid gradient vanishment. Besides, we use the long-short skip connections (LSSC) to replace the ordinary skip connections to preserve more edge detail. In the decoder, the features of different scales are aggregated, and the attention module is employed to capture the spatial context information. Moreover, we utilized the deep supervision mechanism to improve the learning ability on deep and shallow information. Results: We evaluated the proposed method on three public datasets, including, LiTS17, SLiver07, and 3DIRCADb, and obtained Dice scores of 0.9727, 0.9752, and 0.9691 for liver segmentation, respectively, which outperform the other state-of-the-art (SOTA) methods. Conclusions: Both qualitative and quantitative experimental results demonstrate that the proposed method can make full use of the feature information of different stages while enhancing spatial data's learning ability, thereby achieving high liver segmentation accuracy. Thus, it proved to be a promising tool for automatic liver segmentation in clinical assistance.
- Published
- 2023
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41. Modified Otsu thresholding based level set and local directional ternary pattern technique for liver tumor segmentation
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Uplaonkar, Deepak S., Virupakshappa, and Patil, Nagabhushan
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- 2024
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42. Liver Anatomy
- Author
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Nishioka, Yujiro, Shindoh, Junichi, Vauthey, Jean-Nicolas, editor, Kawaguchi, Yoshikuni, editor, and Adam, René, editor
- Published
- 2022
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43. Robust Liver Segmentation Using Boundary Preserving Dual Attention Network
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Yang, Yifan, Jia, Xibin, Wang, Luo, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Yu, Shiqi, editor, Zhang, Zhaoxiang, editor, Yuen, Pong C., editor, Han, Junwei, editor, Tan, Tieniu, editor, Guo, Yike, editor, Lai, Jianhuang, editor, and Zhang, Jianguo, editor
- Published
- 2022
- Full Text
- View/download PDF
44. Transformer Based Generative Adversarial Network for Liver Segmentation
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Demir, Ugur, Zhang, Zheyuan, Wang, Bin, Antalek, Matthew, Keles, Elif, Jha, Debesh, Borhani, Amir, Ladner, Daniela, Bagci, Ulas, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Mazzeo, Pier Luigi, editor, Frontoni, Emanuele, editor, Sclaroff, Stan, editor, and Distante, Cosimo, editor
- Published
- 2022
- Full Text
- View/download PDF
45. MFCA-Net: Multiscale Feature Fusion with Channel-Wise Attention Network for Automatic Liver Segmentation from CT Images
- Author
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Kushnure, Devidas T., Talbar, Sanjay N., Filipe, Joaquim, Editorial Board Member, Ghosh, Ashish, Editorial Board Member, Prates, Raquel Oliveira, Editorial Board Member, Zhou, Lizhu, Editorial Board Member, Raman, Balasubramanian, editor, Murala, Subrahmanyam, editor, Chowdhury, Ananda, editor, Dhall, Abhinav, editor, and Goyal, Puneet, editor
- Published
- 2022
- Full Text
- View/download PDF
46. Modified ResNet for Volumetric Segmentation of Liver and Its Tumor from 3D CT
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Mourya, Gajendra Kumar, Bhatia, Dinesh, Gogoi, Manashjit, Talbar, S. N., Baid, Ujjwal, Dudante, Prasad, Angrisani, Leopoldo, Series Editor, Arteaga, Marco, Series Editor, Panigrahi, Bijaya Ketan, Series Editor, Chakraborty, Samarjit, Series Editor, Chen, Jiming, Series Editor, Chen, Shanben, Series Editor, Chen, Tan Kay, Series Editor, Dillmann, Rüdiger, Series Editor, Duan, Haibin, Series Editor, Ferrari, Gianluigi, Series Editor, Ferre, Manuel, Series Editor, Hirche, Sandra, Series Editor, Jabbari, Faryar, Series Editor, Jia, Limin, Series Editor, Kacprzyk, Janusz, Series Editor, Khamis, Alaa, Series Editor, Kroeger, Torsten, Series Editor, Li, Yong, Series Editor, Liang, Qilian, Series Editor, Martín, Ferran, Series Editor, Ming, Tan Cher, Series Editor, Minker, Wolfgang, Series Editor, Misra, Pradeep, Series Editor, Möller, Sebastian, Series Editor, Mukhopadhyay, Subhas, Series Editor, Ning, Cun-Zheng, Series Editor, Nishida, Toyoaki, Series Editor, Pascucci, Federica, Series Editor, Qin, Yong, Series Editor, Seng, Gan Woon, Series Editor, Speidel, Joachim, Series Editor, Veiga, Germano, Series Editor, Wu, Haitao, Series Editor, Zamboni, Walter, Series Editor, Zhang, Junjie James, Series Editor, Sanyal, Goutam, editor, Travieso-González, Carlos M., editor, Awasthi, Shashank, editor, Pinto, Carla M. A., editor, and Purushothama, B. R., editor
- Published
- 2022
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- View/download PDF
47. Automatic Liver and Hepatic Tumors Segmentation in CT Images Using Convolutional Neural Networks
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Danciu, Alina S., Vlad, Simona, Leordeanu, Marius, Magjarevic, Ratko, Series Editor, Ładyżyński, Piotr, Associate Editor, Ibrahim, Fatimah, Associate Editor, Lackovic, Igor, Associate Editor, Rock, Emilio Sacristan, Associate Editor, Vlad, Simona, editor, and Roman, Nicolae Marius, editor
- Published
- 2022
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- View/download PDF
48. Liver fat analysis using optimized support vector machine with support vector regression.
- Author
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Pushpa, B., Baskaran, B., Vivekanandan, S., and Gokul, P.
- Subjects
- *
SUPPORT vector machines , *FAT analysis , *LIVER analysis , *CONVOLUTIONAL neural networks , *NON-alcoholic fatty liver disease , *FAT - Abstract
BACKGROUND: Fatty liver disease is a common condition caused by excess fat in the liver. It consists of two types: Alcoholic Fatty Liver Disease, also called alcoholic steatohepatitis, and Non-Alcoholic Fatty Liver Disease (NAFLD). As per epidemiological studies, fatty liver encompasses 9% to 32% of the general population in India and affects overweight people. OBJECTIVE: An Optimized Support Vector Machine with Support Vector Regression model is proposed to evaluate the volume of liver fat by image analysis (LFA-OSVM-SVR). METHOD: The input computed tomography (CT) liver images are collected from the Chennai liver foundation and Liver Segmentation (LiTS) datasets. Here, input datasets are pre-processed using Gaussian smoothing filter and bypass filter to reduce noise and improve image intensity. The proposed U-Net method is used to perform the liver segmentation. The Optimized Support Vector Machine is used to classify the liver images as fatty liver image and normal images. The support vector regression (SVR) is utilized for analyzing the fat in percentage. RESULTS: The LFA-OSVM-SVR model effectively analyzed the liver fat from CT scan images. The proposed approach is activated in python and its efficiency is analyzed under certain performance metrics. CONCLUSION: The proposed LFA-OSVM-SVR method attains 33.4%, 28.3%, 25.7% improved accuracy with 55%, 47.7%, 32.6% lower error rate for fatty image classification and 30%, 21%, 19.5% improved accuracy with 57.9%, 46.5%, 31.76% lower error rate for normal image classificationthan compared to existing methods such as Convolutional Neural Network (CNN) with Fractional Differential Enhancement (FDE) (CNN-FDE), Fully Convolutional Networks (FCN) and Non-negative Matrix Factorization (NMF) (FCN-NMF), and Deep Learning with Fully Convolutional Networks (FCN) (DL-FCN). [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
49. En–DeNet Based Segmentation and Gradational Modular Network Classification for Liver Cancer Diagnosis.
- Author
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G, Suganeshwari, Appadurai, Jothi Prabha, Kavin, Balasubramanian Prabhu, C, Kavitha, and Lai, Wen-Cheng
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LIVER cancer ,CANCER diagnosis ,TUMOR classification ,THREE-dimensional imaging ,DEEP learning - Abstract
Liver cancer ranks as the sixth most prevalent cancer among all cancers globally. Computed tomography (CT) scanning is a non-invasive analytic imaging sensory system that provides greater insight into human structures than traditional X-rays, which are typically used to make the diagnosis. Often, the final product of a CT scan is a three-dimensional image constructed from a series of interlaced two-dimensional slices. Remember that not all slices deliver useful information for tumor detection. Recently, CT scan images of the liver and its tumors have been segmented using deep learning techniques. The primary goal of this study is to develop a deep learning-based system for automatically segmenting the liver and its tumors from CT scan pictures, and also reduce the amount of time and labor required by speeding up the process of diagnosing liver cancer. At its core, an Encoder–Decoder Network (En–DeNet) uses a deep neural network built on UNet to serve as an encoder, and a pre-trained EfficientNet to serve as a decoder. In order to improve liver segmentation, we developed specialized preprocessing techniques, such as the production of multichannel pictures, de-noising, contrast enhancement, ensemble, and the union of model predictions. Then, we proposed the Gradational modular network (GraMNet), which is a unique and estimated efficient deep learning technique. In GraMNet, smaller networks called SubNets are used to construct larger and more robust networks using a variety of alternative configurations. Only one new SubNet modules is updated for learning at each level. This helps in the optimization of the network and minimizes the amount of computational resources needed for training. The segmentation and classification performance of this study is compared to the Liver Tumor Segmentation Benchmark (LiTS) and 3D Image Rebuilding for Comparison of Algorithms Database (3DIRCADb01). By breaking down the components of deep learning, a state-of-the-art level of performance can be attained in the scenarios used in the evaluation. In comparison to more conventional deep learning architectures, the GraMNets generated here have a low computational difficulty. When associated with the benchmark study methods, the straight forward GraMNet is trained faster, consumes less memory, and processes images more rapidly. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
50. Automatic 3D CT liver segmentation based on fast global minimization of probabilistic active contour.
- Author
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Renchao Jin, Manyang Wang, Lijun Xu, Jiayi Lu, Enmin Song, and Guangzhi Ma
- Subjects
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COMPUTER-aided diagnosis , *RIB cage , *COMPUTED tomography , *DEEP learning , *LIVER - Abstract
Purpose:Automatic liver segmentation from computed tomography (CT) images is an essential preprocessing step for computer-aided diagnosis of liver diseases. However, due to the large differences in liver shapes, low-contrast to adjacent tissues, and existence of tumors or other abnormalities, liver segmentation has been very challenging. This study presents an accurate and fast liver segmentation method based on a novel probabilistic active contour (PAC) model and its fast global minimization scheme (3D-FGMPAC), which is explainable as compared with deep learning methods. Methods:The proposed method first constructs a slice-indexed-histogram to localize the volume of interest (VOI) and estimate the probability that a voxel belongs to the liver according its intensity. The probabilistic image would be used to initialize the 3D PAC model. Secondly, a new contour indicator function, which is a component of the model, is produced by combining the gradientbased edge detection and Hessian-matrix-based surface detection. Then, a fast numerical scheme derived for the 3D PAC model is performed to evolve the initial probabilistic image into the global minimizer of the model, which is a smoothed probabilistic image showing a distinctly highlighted liver. Next, a simple regiongrowing strategy is applied to extract the whole liver mask from the smoothed probabilistic image. Finally, a B-spline surface is constructed to fit the patch of the rib cage to prevent possible leakage into adjacent intercostal tissues. Results:The proposed method is evaluated on two public datasets.The average Dice score, volume overlap error, volume difference, symmetric surface distance and volume processing time are 0.96, 7.35%, 0.02%, 1.17 mm and 19.8 s for the Sliver07 dataset,and 0.95,8.89%,−0.02%,1.45 mm and 23.08 s for the 3Dircadb dataset, respectively. Conclusions:The proposed fully-automatic approach can effectively segment the liver from low-contrast and complex backgrounds. The quantitative and qualitative results demonstrate that the proposed segmentation method outperforms state-of -the-art traditional automatic liver segmentation algorithms and achieves very competitive performance compared with recent deep leaning-based methods. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
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