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7. Deep sequencing analysis of clinical samples from patients with acute infectious conjunctivitis during the COVID-19 delta surge in Madurai, India

Author

Lalitha, Prajna, Prajna, N Venkatesh, Gunasekaran, Rameshkumar, Teja, Gonugunta Vishnu, Sharma, Sankalp S, Hinterwirth, Armin, Ruder, Kevin, Zhong, Lina, Chen, Cindi, Deiner, Michael, Huang, ChunHong, Pinsky, Benjamin A, Lietman, Thomas M, Doan, Thuy, Seitzman, Gerami D, Prajna, Lalitha, Venkatesh Prajna, N, Gunasekaran, Ramesh, Sharma, Sankalp Singh, Teja, Vishnu, Chaudhary, Meenu, Sitaula, Sanjeeta, Sié, Ali, Coulibaly, Boubacar, Bountogo, Mamadou, Somkijrungroj, Thanapong, Satitpitakul, Vannarut, Tran, Huy, Mai, Linh Hoàng, Xuân, Thảo Hạ, Tran, Yen, Urzua, Cristhian A, Vega, Fabian, Salgado, Felipe, Cuitino, Loreto, Lopez, Emiliano Sebastian, Gimeno, Federico Luengo, Jaeschke, Tomas, Pérez, Fernando Pérez, Martínez, Jaime Macías, Lansingh, Van Charles, Thanapaisal, Sukhumal, Laovirojjanakul, Wipada, McKie, George, Chavez, Kenia, Redd, Travis, Chamberlain, Winston, Cheng, Angel, Tham, Vivien, Sansanayudh, Wiwan, Yakoura, Abba Kaka Hajia, Amza, Abdou, Souley, Abdoul Salam Youssoufou, Diori, Adam Nouhou, Nassirou, Beido, Kadri, Boubacar, Mariama, Boubacar, Ibrahim, Cissé Mamadou, Roufaye, Lamyne Aboubacar, Boulhassane, Ramatou, Ali, Saley, Abdou, Zakou, Goren, Lee, Sella, Ruti, Kelliher, Clare, Green, Laura, Ong, Hon Shing, Mehta, Jod, Liu, Yu-Chi, Hwang, De-Kuang, Fan, Nai-Wen, Chiong, Hong Sheng, Lacorzana, Javier, Cabrera-Aguas, Maria, Watson, Stephanie, Tsui, Edmund, Ramirez, Joana, Cherian, Nina M, Feit-Leichman, Rachel, Hughes, Reginald E, Onclinx, Tania, Yu, Carol, McClean, Esmeralda, Molina, Iliana, Yu, Danny, Liu, David, Lebas, Elodie, Colby, Emily, Seitzman, Gerami, Abraham, Thomas, Lietman, Thomas, Porco, Travis, and McLeod, Stephen

Subjects
Biomedical and Clinical Sciences, Clinical Sciences, Clinical Research, Clinical Trials and Supportive Activities, Emerging Infectious Diseases, Infectious Diseases, Vaccine Related, Eye Disease and Disorders of Vision, Infection, Good Health and Well Being, Humans, COVID-19, SARS-CoV-2, Prospective Studies, India, Conjunctivitis, Adenoviruses, Human, Acute Disease, High-Throughput Nucleotide Sequencing, SCORPIO (Seasonal Conjunctivitis Outbreak Reporting for Prevention and Improved Outcomes) Study Group, Microbiology, Medical Microbiology, Virology, Clinical sciences, Medical microbiology
Abstract

BackgroundSeasonal outbreaks of infectious conjunctivitis remain a public health issue. Determination of outbreak etiologies in the context of a worldwide pandemic may provide useful information to guide public health strategies. The aim of this study was to identify pathogens associated with outpatient infectious conjunctivitis during the COVID-19 Delta surge.MethodsThis prospective study was conducted from April 2021 to September 2021. All outpatients presenting to the Aravind Eye Center (Madurai, India) with signs and symptoms consistent with acute infectious conjunctivitis were eligible. Three swabs were obtained from each participant: one from each conjunctiva and one from the anterior nares. Samples were processed for metagenomic RNA deep sequencing (RNA-seq).ResultsSamples from 106 study participants were sequenced. The most common presenting symptoms were tearing (86%) and itching (71%). Preauricular lymphadenopathy was present in 38% of participants. 20% of participants had close contacts with similar symptoms. Systemic symptoms such as coughing, runny nose, vomiting or diarrhea were uncommonly reported. 60% of all participants used some medicated eye drops upon enrollment. 75% of study participants demonstrated infection with human adenovirus D (HAdV-D). 11% of conjunctivitis was associated with SARS-CoV-2. 15% had no definitive pathogen detected. 8% of all participants had codetection of more than one pathogen on RNA-seq.ConclusionsDuring the COVID-19 Delta surge in India, HAdV-D was the most common pathogen associated with infectious conjunctivitis. SARS-CoV-2 was the second most common associated pathogen. Seasonal surveillance may be necessary for the determination of emerging and reemerging pathogens responsible for infectious conjunctivitis.

Published
2022

8. Human Conjunctival Transcriptome in Acanthamoeba Keratitis: An Exploratory Study

Author

Seitzman, Gerami D., Keenan, Jeremy D., Lietman, Thomas M., Ruder, Kevin, Zhong, Lina, Chen, Cindi, Liu, YuHeng, Yu, Danny, Abraham, Thomas, Hinterwirth, Armin, Doan, Thuy, Seitz, Berthold, Flockerzi, Elias, Daas, Loay, Hamon, Loïc, Bofferding, Max, Berger, Tim, Dail, Yaser Abu, Livny, Eitan, Bahar, Irit, Goren, Lee, Sella, Ruti, Misanjo, Esther, Likongwe, Hendrix, Kalua, Khumbo, Núñez Amaro, Carlos Daniel, Martínez, Jaime Macías, Pérez Pérez, Jose Fernando, Lansingh, Van Charles, Amza, Abdou, Youssouffou Souley, Abdoul Salam, Bachabi, Abdourahame, Diori, Adam Nouhou, Zakari, Adamou, Atto, Aichatou, Hamidou, Bagna, Yacouba, Barazé, Yahaya, Bonkano, Sofo, Fatouma, Abba Kaka, Hadjia Yakoura, Bouba Traore, Hassane Amadou, Laouali, Ibrahim Mahaman, Saadou, Issa, Laouali, Kakale, Roufaye, Lamyne, Laminou, Laouali, Sani, Magagi Mamane, Ibrahim, Mahaman, Boubacar, Mariama, Soumana, Mariama, Yacouba, Mayaki Moctar, Hassane, Mijitaba, Issiakou, Moctar, Salifou, Moumouni, Boubacar, Nameywa, Boulhassane, Ramatou, Abdoulaye, Sadiaa, Ali, Seley, Soumana, Yaboubou, Abdou, Zakou, Ong, Hon Shing, Mehta, Jodhbir S., Liu, Yu-Chi, Hollhumer, Roland, Bograd, Alexandra, Tappeiner, Christoph, Goldblum, David, Fan, Nai-Wen, Sangsao, Keeratika, Chokesuwattanaskul, Susama, Satitpitakul, Vannarut, Sansanayudh, Wiwan, Serrano, Andres, Trief, Danielle, Rand, Gabriel, Florakis, George J., Kim, Janice, Suh, Leejee H., Zaffos, Joshua, Potts, Luke, Hirabayashi, Kristin, Redd, Travis, Gang, Anjulie M., Carli, David G., Price, Francis W., Jr, Dudasko, Kathleen N., Price, Marianne O., Feng, Matthew T., Mortensen, Xavier M., Berkowitz, Carla, Tsui, Edmund, Patarajierapun, Promporn, Fung, Simon S. M., Yu, Carol, McClean, Esmeralda, Kim, Philip, Hinterwirth, Armin, Chen, Cindi, Yan, Daisy, Yu, Danny, Lebas, Elodie, Seitzman, Gerami D., Ouimette, Kevin, Zhong, Lina, Deiner, Michael S., Abraham, Thomas, Lietman, Thomas M., Doan, Thuy, Porco, Travis C., Liu, Yuheng, Lin, Amy, Zaugg, Brian, Nuttall, Elizabeth, Gutierrez, Karen, Hu, Katherine S., Kurt, Kevin, Nehls, Sarah, Enright, Jennifer, Walia, Jessica, Thulasi, Praneetha, and McKie, George A.

Published
2024
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24. Human Conjunctival Transcriptome in AcanthamoebaKeratitis: An Exploratory Study

Author

Seitzman, Gerami D., Keenan, Jeremy D., Lietman, Thomas M., Ruder, Kevin, Zhong, Lina, Chen, Cindi, Liu, YuHeng, Yu, Danny, Abraham, Thomas, Hinterwirth, Armin, Doan, Thuy, Seitz, Berthold, Flockerzi, Elias, Daas, Loay, Hamon, Loïc, Bofferding, Max, Berger, Tim, Dail, Yaser Abu, Livny, Eitan, Bahar, Irit, Goren, Lee, Sella, Ruti, Misanjo, Esther, Likongwe, Hendrix, Kalua, Khumbo, Núñez Amaro, Carlos Daniel, Martínez, Jaime Macías, Pérez Pérez, Jose Fernando, Lansingh, Van Charles, Amza, Abdou, Youssouffou Souley, Abdoul Salam, Bachabi, Abdourahame, Diori, Adam Nouhou, Zakari, Adamou, Atto, Aichatou, Hamidou, Bagna, Yacouba, Barazé, Yahaya, Bonkano, Sofo, Fatouma, Abba Kaka, Hadjia Yakoura, Bouba Traore, Hassane Amadou, Laouali, Ibrahim Mahaman, Saadou, Issa, Laouali, Kakale, Roufaye, Lamyne, Laminou, Laouali, Sani, Magagi Mamane, Ibrahim, Mahaman, Boubacar, Mariama, Soumana, Mariama, Yacouba, Mayaki Moctar, Hassane, Mijitaba, Issiakou, Moctar, Salifou, Moumouni, Boubacar, Nameywa, Boulhassane, Ramatou, Abdoulaye, Sadiaa, Ali, Seley, Soumana, Yaboubou, Abdou, Zakou, Ong, Hon Shing, Mehta, Jodhbir S., Liu, Yu-Chi, Hollhumer, Roland, Bograd, Alexandra, Tappeiner, Christoph, Goldblum, David, Fan, Nai-Wen, Sangsao, Keeratika, Chokesuwattanaskul, Susama, Satitpitakul, Vannarut, Sansanayudh, Wiwan, Serrano, Andres, Trief, Danielle, Rand, Gabriel, Florakis, George J., Kim, Janice, Suh, Leejee H., Zaffos, Joshua, Potts, Luke, Hirabayashi, Kristin, Redd, Travis, Gang, Anjulie M., Carli, David G., Price, Francis W., Dudasko, Kathleen N., Price, Marianne O., Feng, Matthew T., Mortensen, Xavier M., Berkowitz, Carla, Tsui, Edmund, Patarajierapun, Promporn, Fung, Simon S. M., Yu, Carol, McClean, Esmeralda, Kim, Philip, Hinterwirth, Armin, Chen, Cindi, Yan, Daisy, Yu, Danny, Lebas, Elodie, Seitzman, Gerami D., Ouimette, Kevin, Zhong, Lina, Deiner, Michael S., Abraham, Thomas, Lietman, Thomas M., Doan, Thuy, Porco, Travis C., Liu, Yuheng, Lin, Amy, Zaugg, Brian, Nuttall, Elizabeth, Gutierrez, Karen, Hu, Katherine S., Kurt, Kevin, Nehls, Sarah, Enright, Jennifer, Walia, Jessica, Thulasi, Praneetha, and McKie, George A.

Abstract

Supplemental Digital Content is Available in the Text.

Published
2024
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26. One-Step Intraoperative Optical Coherence Tomography Guided Tunnel, Mushroom Femtosecond Laser Big Bubble Deep Anterior Lamellar Keratoplasty.

Author

Abusayf, Mohammed M., Liu, Yu-Chi, Han, Evelina, Yu, Isabelle Lee Xin, Riau, Andri K., and Mehta, Jodhbir S.

Subjects
*FEMTOSECOND lasers, *OPTICAL tomography, *LASER beam cutting, *CORNEA surgery, *TUNNELS
Abstract

The aim of our study is to investigate the feasibility and outcomes of using a femtosecond laser (FSL) platform (Ziemer LDV Z8) for deep anterior lamellar keratoplasty (DALK), enabling the creation of mushroom-shaped graft–host junctions, lamellar cuts, and intrastromal tunnels, to facilitate the big bubble, in one step. We included wet lab experiments on nine porcine eyes to assess the laser accuracy and cuts depth using an anterior segment (AS) OCT. This was followed by an interventional prospective case series on 10 eyes with variant corneal pathologies. The Z8 system, with in-built intraoperative optical coherence tomography (iOCT), guided corneal scans and directed the cuts. ASOCT showed visible mushroom configurations, lamellar cuts, and tunnels. Deviations from the target were 1.6%, 2.6%, and 3.5%. Anterior lamellar removal was easy in all clinical cases, including corneal scarring. The intrastromal tunnel was found at the preset location and the mushroom configuration was acquired. A big bubble was achieved in all cases. Type 1, 2, and 3 bubbles were formed in eight, one, and one case, respectively. We describe a new approach to DALK in which the in-built iOCT-guided FSL enables safe, precise, controlled, and reproducible desired cuts in one step. The preliminary clinical outcomes were favorable. [ABSTRACT FROM AUTHOR]

Published
2024
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39. The Drosophila melanogaster phospholipid flippase dATP8B is required for odorant receptor function.

Author

Liu, Yu-Chi, Pearce, Michelle W, Honda, Takahiro, Johnson, Travis K, Charlu, Sandhya, Sharma, Kavita R, Imad, Mays, Burke, Richard E, Zinsmaier, Konrad E, Ray, Anandasankar, Dahanukar, Anupama, de Bruyne, Marien, and Warr, Coral G

Subjects
Olfactory Receptor Neurons, Animals, Drosophila melanogaster, Phospholipid Transfer Proteins, Drosophila Proteins, Receptors, Odorant, Smell, Signal Transduction, Chemoreceptor Cells, Neurosciences, 1.1 Normal biological development and functioning, Neurological, Developmental Biology, Genetics
Abstract

The olfactory systems of insects are fundamental to all aspects of their behaviour, and insect olfactory receptor neurons (ORNs) exhibit exquisite specificity and sensitivity to a wide range of environmental cues. In Drosophila melanogaster, ORN responses are determined by three different receptor families, the odorant (Or), ionotropic-like (IR) and gustatory (Gr) receptors. However, the precise mechanisms of signalling by these different receptor families are not fully understood. Here we report the unexpected finding that the type 4 P-type ATPase phospholipid transporter dATP8B, the homologue of a protein associated with intrahepatic cholestasis and hearing loss in humans, is crucial for Drosophila olfactory responses. Mutations in dATP8B severely attenuate sensitivity of odorant detection specifically in Or-expressing ORNs, but do not affect responses mediated by IR or Gr receptors. Accordingly, we find dATP8B to be expressed in ORNs and localised to the dendritic membrane of the olfactory neurons where signal transduction occurs. Localisation of Or proteins to the dendrites is unaffected in dATP8B mutants, as is dendrite morphology, suggesting instead that dATP8B is critical for Or signalling. As dATP8B is a member of the phospholipid flippase family of ATPases, which function to determine asymmetry in phospholipid composition between the outer and inner leaflets of plasma membranes, our findings suggest a requirement for phospholipid asymmetry in the signalling of a specific family of chemoreceptor proteins.

Published
2014

40. Blood-Derived Eye Drops for the Treatment of Corneal Neuropathic Pain.

Author

Anam, Ansa, Liu, Chang, Tong, Louis, and Liu, Yu-Chi

Subjects
EYE drops, NEURALGIA, SJOGREN'S syndrome, WOUND healing, CORNEA, DRY eye syndromes, PLATELET-rich plasma, UMBILICAL cord, NERVOUS system regeneration
Abstract

Blood-derived preparations, including autologous or allogenic serum, umbilical cord serum/plasma, and platelet-rich plasma eye drops, contain various growth factors, cytokines, and immunoglobulins that resemble natural tears. These components play important roles in corneal cell migration, proliferation, and wound healing. Blood-derived eye drops have demonstrated clinical effectiveness across a spectrum of ocular surface conditions, encompassing dry eye disease, Sjögren's syndrome, graft-versus-host disease, and neuropathic corneal pain (NCP). Currently, management of NCP remains challenging. The emergence of blood-derived eye drops represents a promising therapeutic approach. In this review, we discuss the benefits and limitations of different blood-derived eye drops, their mechanisms of action, and treatment efficacy in patients with NCP. Several studies have demonstrated the clinical efficacy of autologous serum eye drops in relieving pain and pain-like symptoms, such as allodynia and photoallodynia. Corneal nerve parameters were also significantly improved, as evidenced by increased nerve fiber density, length, nerve reflectivity, and tortuosity, as well as a decreased occurrence of beading and neuromas after the treatment. The extent of nerve regeneration correlated with improvement in patient-reported photoallodynia. Cord plasma eye drops also show potential for symptom alleviation and corneal nerve regeneration. Future directions for clinical practice and research involve standardizing preparation protocols, establishing treatment guidelines, elucidating underlying mechanisms, conducting long-term clinical trials, and implementing cost-effective measures such as scaling up manufacturing. With ongoing advancements, blood-derived eye drops hold promise as a valuable therapeutic option for patients suffering from NCP. [ABSTRACT FROM AUTHOR]

Published
2024
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41. Coxsackievirus A24 causing acute conjunctivitis in a 2023 outbreak in Vietnam

Author

Prajna, Lalitha, Prajna, N. Venkatesh, Gunasekaran, Ramesh, Sharma, Sankalp Singh, Teja, Vishnu, Chaudhary, Meenu, Sitaula, Sanjeeta, Sié, Ali, Coulibaly, Boubacar, Bountogo, Mamadou, Somkijrungroj, Thanapong, Satitpitakul, Vannarut, Tran, Huy, Mai, Linh Hoàng, Xuân, Thảo Hạ, Tran, Yen, Urzua, Cristhian A., Vega, Fabian, Salgado, Felipe, Cuitino, Loreto, Pérez, Fernando Pérez, Martínez, Jaime Macías, Lansingh, Van Charles, Thanapaisal, Sukhumal, Laovirojjanakul, Wipada, McKie, George, Chavez, Kenia, Redd, Travis, Chamberlain, Winston, Cheng, Angel, Tham, Vivien, Sansanayudh, Wiwan, Yakoura, Abba Kaka Hajia, Amza, Abdou, Souley, Abdoul Salam Youssoufou, Diori, Adam Nouhou, Nassirou, Beido, Kadri, Boubacar, Mariama, Boubacar, Ibrahim, Cissé Mamadou, Roufaye, Lamyne Aboubacar, Boulhassane, Ramatou, Ali, Saley, Abdou, Zakou, Goren, Lee, Bahar, Irit, Sella, Ruti, Kelliher, Clare, Green, Laura, Ong, Hon Shing, Mehta, Jod, Liu, Yu-Chi, Pinsky, Benjamin A., Hwang, De-Kuang, Fan, Nai-Wen, Chiong, Hong Sheng, Lacorzana, Javier, Cabrera-Aguas, Maria, Watson, Stephanie, Tsui, Edmund, Cherian, Nina M., Feit-Leichman, Rachel, Hughes, Reginald E., Jr, Onclinx, Tania, Privratsky, Joseph K, Yu, Carol, McClean, Esmeralda, Molina, Iliana, Hinterwirth, Armin, Chen, Cindi, Yu, Danny, Liu, David, Lebas, Elodie, Colby, Emily, Seitzman, Gerami, Ruder, Kevin, Zhong, Lina, Deiner, Michael, Abraham, Thomas, Lietman, Thomas, Doan, Thuy, Porco, Travis, McLeod, Stephen, Kanai, Kuniyoshi, Whiteside, Meredith, Yeh, Steven, Fashina, Tolulope, Chodosh, James, Tarkap, Bridgit, Garap, Jambi N., Mangot, Magdalene, Amel, Edwin, Taleo, Fasihah, Kasso, Johnson, Willie, Kalbule, Nanu, Madopule, Rymill, Prudence, Solomon, Anthony W., Ha, Thao, Hoang, Linh, Liu, YuHeng, Porco, Travis C., Lietman, Thomas M., and Seitzman, Gerami D.

Published
2024
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44. High Rate of Recurrent De Novo Mutations in Developmental and Epileptic Encephalopathies

Author

Hamdan, Fadi F., Myers, Candace T., Cossette, Patrick, Lemay, Philippe, Spiegelman, Dan, Laporte, Alexandre Dionne, Nassif, Christina, Diallo, Ousmane, Monlong, Jean, Cadieux-Dion, Maxime, Dobrzeniecka, Sylvia, Meloche, Caroline, Retterer, Kyle, Cho, Megan T., Rosenfeld, Jill A., Bi, Weimin, Massicotte, Christine, Miguet, Marguerite, Brunga, Ledia, Regan, Brigid M., Mo, Kelly, Tam, Cory, Schneider, Amy, Hollingsworth, Georgie, FitzPatrick, David R., Donaldson, Alan, Canham, Natalie, Blair, Edward, Kerr, Bronwyn, Fry, Andrew E., Thomas, Rhys H., Shelagh, Joss, Hurst, Jane A., Brittain, Helen, Blyth, Moira, Lebel, Robert Roger, Gerkes, Erica H., Davis-Keppen, Laura, Stein, Quinn, Chung, Wendy K., Dorison, Sara J., Benke, Paul J., Fassi, Emily, Corsten-Janssen, Nicole, Kamsteeg, Erik-Jan, Mau-Them, Frederic T., Bruel, Ange-Line, Verloes, Alain, Õunap, Katrin, Wojcik, Monica H., Albert, Dara V.F., Venkateswaran, Sunita, Ware, Tyson, Jones, Dean, Liu, Yu-Chi, Mohammad, Shekeeb S., Bizargity, Peyman, Bacino, Carlos A., Leuzzi, Vincenzo, Martinelli, Simone, Dallapiccola, Bruno, Tartaglia, Marco, Blumkin, Lubov, Wierenga, Klaas J., Purcarin, Gabriela, O’Byrne, James J., Stockler, Sylvia, Lehman, Anna, Keren, Boris, Nougues, Marie-Christine, Mignot, Cyril, Auvin, Stéphane, Nava, Caroline, Hiatt, Susan M., Bebin, Martina, Shao, Yunru, Scaglia, Fernando, Lalani, Seema R., Frye, Richard E., Jarjour, Imad T., Jacques, Stéphanie, Boucher, Renee-Myriam, Riou, Emilie, Srour, Myriam, Carmant, Lionel, Lortie, Anne, Major, Philippe, Diadori, Paola, Dubeau, François, D’Anjou, Guy, Bourque, Guillaume, Berkovic, Samuel F., Sadleir, Lynette G., Campeau, Philippe M., Kibar, Zoha, Lafrenière, Ronald G., Girard, Simon L., Mercimek-Mahmutoglu, Saadet, Boelman, Cyrus, Rouleau, Guy A., Scheffer, Ingrid E., Mefford, Heather C., Andrade, Danielle M., Rossignol, Elsa, Minassian, Berge A., and Michaud, Jacques L.

Published
2017
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45. Cataracts

Author

Liu, Yu-Chi, Wilkins, Mark, Kim, Terry, Malyugin, Boris, and Mehta, Jodhbir S

Published
2017
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50. Applications of Imaging Technologies in Fuchs Endothelial Corneal Dystrophy: A Narrative Literature Review.

Author

Han, Sang Beom, Liu, Yu-Chi, Liu, Chang, and Mehta, Jodhbir S.

Subjects
*CORNEAL dystrophies, *LITERATURE reviews, *CONFOCAL microscopy, *OPTICAL coherence tomography
Abstract

Fuchs endothelial corneal dystrophy (FECD) is a complex genetic disorder characterized by the slow and progressive degeneration of corneal endothelial cells. Thus, it may result in corneal endothelial decompensation and irreversible corneal edema. Moreover, FECD is associated with alterations in all corneal layers, such as thickening of the Descemet membrane, stromal scarring, subepithelial fibrosis, and the formation of epithelial bullae. Hence, anterior segment imaging devices that enable precise measurement of functional and anatomical changes in the cornea are essential for the management of FECD. In this review, the authors will introduce studies on the application of various imaging modalities, such as anterior segment optical coherence tomography, Scheimpflug corneal tomography, specular microscopy, in vitro confocal microscopy, and retroillumination photography, in the diagnosis and monitoring of FECD and discuss the results of these studies. The application of novel technologies, including image processing technology and artificial intelligence, that are expected to further enhance the accuracy, precision, and speed of the imaging technologies will also be discussed. [ABSTRACT FROM AUTHOR]

Published
2024
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