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With the cross-fertilization of applications and the ever-increasing scale of models, the efficiency and productivity of hardware computing architectures have become inadequate. This inadequacy further exacerbates issues in design flexibility, design complexity, development cycle, and development costs (4-d problems) in divergent scenarios. To address these challenges, this paper proposed a flexible design flow called DIAG based on plugin techniques. The proposed flow guides hardware development through four layers: definition(D), implementation(I), application(A), and generation(G). Furthermore, a versatile CGRA generator called WindMill is implemented, allowing for agile generation of customized hardware accelerators based on specific application demands. Applications and algorithm tasks from three aspects is experimented. In the case of reinforcement learning algorithm, a significant performance improvement of $2.3\times$ compared to GPU is achieved., Comment: 7 pages, 10 figures

Spatial architecture is a high-performance architecture that uses control flow graphs and data flow graphs as the computational model and producer/consumer models as the execution models. However, existing spatial architectures suffer from control flow handling challenges. Upon categorizing their PE execution models, we find that they lack autonomous, peer-to-peer, and temporally loosely-coupled control flow handling capability. This leads to limited performance in intensive control programs. A spatial architecture, Marionette, is proposed, with an explicit-designed control flow plane. The Control Flow Plane enables autonomous, peer-to-peer and temporally loosely-coupled control flow handling. The Proactive PE Configuration ensures timely and computation-overlapped configuration to improve handling Branch Divergence. The Agile PE Assignment enhance the pipeline performance of Imperfect Loops. We develop full stack of Marionette (ISA, compiler, simulator, RTL) and demonstrate that in a variety of challenging intensive control programs, compared to state-of-the-art spatial architectures, Marionette outperforms Softbrain, TIA, REVEL, and RipTide by geomean 2.88x, 3.38x, 1.55x, and 2.66x.

Background: Encouraged by the success of pretrained Transformer models in many natural language processing tasks, their use for International Classification of Diseases (ICD) coding tasks is now actively being explored. In this study, we investigate three types of Transformer-based models, aiming to address the extreme label set and long text classification challenges that are posed by automated ICD coding tasks. Methods: The Transformer-based model PLM-ICD achieved the current state-of-the-art (SOTA) performance on the ICD coding benchmark dataset MIMIC-III. It was chosen as our baseline model to be further optimised. XR-Transformer, the new SOTA model in the general extreme multi-label text classification domain, and XR-LAT, a novel adaptation of the XR-Transformer model, were also trained on the MIMIC-III dataset. XR-LAT is a recursively trained model chain on a predefined hierarchical code tree with label-wise attention, knowledge transferring and dynamic negative sampling mechanisms. Results: Our optimised PLM-ICD model, which was trained with longer total and chunk sequence lengths, significantly outperformed the current SOTA PLM-ICD model, and achieved the highest micro-F1 score of 60.8%. The XR-Transformer model, although SOTA in the general domain, did not perform well across all metrics. The best XR-LAT based model obtained results that were competitive with the current SOTA PLM-ICD model, including improving the macro-AUC by 2.1%. Conclusion: Our optimised PLM-ICD model is the new SOTA model for automated ICD coding on the MIMIC-III dataset, while our novel XR-LAT model performs competitively with the previous SOTA PLM-ICD model.

Deep learning applications are being transferred from the cloud to edge with the rapid development of embedded computing systems. In order to achieve higher energy efficiency with the limited resource budget, neural networks(NNs) must be carefully designed in two steps, the architecture design and the quantization policy choice. Neural Architecture Search(NAS) and Quantization have been proposed separately when deploying NNs onto embedded devices. However, taking the two steps individually is time-consuming and leads to a sub-optimal final deployment. To this end, we propose a novel neural network design framework called Hardware-aware Quantized Neural Architecture Search(HQNAS) framework which combines the NAS and Quantization together in a very efficient manner using weight-sharing and bit-sharing. It takes only 4 GPU hours to discover an outstanding NN policy on CIFAR10. It also takes only %10 GPU time to generate a comparable model on Imagenet compared to the traditional NAS method with 1.8x decrease of latency and a negligible accuracy loss of only 0.7%. Besides, our method can be adapted in a lifelong situation where the neural network needs to evolve occasionally due to changes of local data, environment and user preference.

Due to user privacy and regulatory restrictions, federate learning (FL) is proposed as a distributed learning framework for training deep neural networks (DNN) on decentralized data clients. Recent advancements in FL have applied Neural Architecture Search (NAS) to replace the predefined one-size-fit-all DNN model, which is not optimal for all tasks of various data distributions, with searchable DNN architectures. However, previous methods suffer from expensive communication cost rasied by frequent large model parameters transmission between the server and clients. Such difficulty is further amplified when combining NAS algorithms, which commonly require prohibitive computation and enormous model storage. Towards this end, we propose FAQS, an efficient personalized FL-NAS-Quantization framework to reduce the communication cost with three features: weight-sharing super kernels, bit-sharing quantization and masked transmission. FAQS has an affordable search time and demands very limited size of transmitted messages at each round. By setting different personlized pareto function loss on local clients, FAQS can yield heterogeneous hardware-aware models for various user preferences. Experimental results show that FAQS achieves average reduction of 1.58x in communication bandwith per round compared with normal FL framework and 4.51x compared with FL+NAS framwork.

International Classification of Diseases (ICD) coding plays an important role in systematically classifying morbidity and mortality data. In this study, we propose a hierarchical label-wise attention Transformer model (HiLAT) for the explainable prediction of ICD codes from clinical documents. HiLAT firstly fine-tunes a pretrained Transformer model to represent the tokens of clinical documents. We subsequently employ a two-level hierarchical label-wise attention mechanism that creates label-specific document representations. These representations are in turn used by a feed-forward neural network to predict whether a specific ICD code is assigned to the input clinical document of interest. We evaluate HiLAT using hospital discharge summaries and their corresponding ICD-9 codes from the MIMIC-III database. To investigate the performance of different types of Transformer models, we develop ClinicalplusXLNet, which conducts continual pretraining from XLNet-Base using all the MIMIC-III clinical notes. The experiment results show that the F1 scores of the HiLAT+ClinicalplusXLNet outperform the previous state-of-the-art models for the top-50 most frequent ICD-9 codes from MIMIC-III. Visualisations of attention weights present a potential explainability tool for checking the face validity of ICD code predictions.

Electronic Medical Records (EMRs) contain clinical narrative text that is of great potential value to medical researchers. However, this information is mixed with Personally Identifiable Information (PII) that presents risks to patient and clinician confidentiality. This paper presents an end-to-end deidentification framework to automatically remove PII from Australian hospital discharge summaries. Our corpus included 600 hospital discharge summaries which were extracted from the EMRs of two principal referral hospitals in Sydney, Australia. Our end-to-end de-identification framework consists of three components: 1) Annotation: labelling of PII in the 600 hospital discharge summaries using five pre-defined categories: person, address, date of birth, individual identification number, phone/fax number; 2) Modelling: training six named entity recognition (NER) deep learning base-models on balanced and imbalanced datasets; and evaluating ensembles that combine all six base-models, the three base-models with the best F1 scores and the three base-models with the best recall scores respectively, using token-level majority voting and stacking methods; and 3) De-identification: removing PII from the hospital discharge summaries. Our results showed that the ensemble model combined using the stacking Support Vector Machine (SVM) method on the three base-models with the best F1 scores achieved excellent results with a F1 score of 99.16% on the test set of our corpus. We also evaluated the robustness of our modelling component on the 2014 i2b2 de-identification dataset. Our ensemble model, which uses the token-level majority voting method on all six basemodels, achieved the highest F1 score of 96.24% at strict entity matching and the highest F1 score of 98.64% at binary token-level matching compared to two state-of-the-art methods.

Despite the recent successes of deep neural networks, it remains challenging to achieve high precision keyword spotting task (KWS) on resource-constrained devices. In this study, we propose a novel context-aware and compact architecture for keyword spotting task. Based on residual connection and bottleneck structure, we design a compact and efficient network for KWS task. To leverage the long range dependencies and global context of the convolutional feature maps, the graph convolutional network is introduced to encode the non-local relations. By evaluated on the Google Speech Command Dataset, the proposed method achieves state-of-the-art performance and outperforms the prior works by a large margin with lower computational cost., Comment: Accepted by the IEEE Automatic Speech Recognition and Understanding Workshop(ASRU 2019)