20 results on '"Linh. A. Dam"'
Search Results
2. Screening of the PA14NR Transposon Mutant Library Identifies Genes Involved in Resistance to Bacteriophage Infection in Pseudomomas aeruginosa
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Peiying Ho, Linh Chi Dam, Wei Ren Ryanna Koh, Rui Si Nai, Qian Hui Nah, Faeqa Binte Muhammad Rajaie Fizla, Chia Ching Chan, Thet Tun Aung, Shin Giek Goh, You Fang, Zhining Lim, Ming Guang Koh, Michael Demott, Yann Felix Boucher, Benoit Malleret, Karina Yew-Hoong Gin, Peter Dedon, and Wilfried Moreira
- Subjects
Pseudomonas aeruginosa ,bacteriophage ,bacteriophage resistance mechanisms ,transposon mutagenesis ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Multidrug-resistant P. aeruginosa infections pose a serious public health threat due to the rise in antimicrobial resistance. Phage therapy has emerged as a promising alternative. However, P. aeruginosa has evolved various mechanisms to thwart phage attacks, making it crucial to decipher these resistance mechanisms to develop effective therapeutic strategies. In this study, we conducted a forward-genetic screen of the P. aeruginosa PA14 non-redundant transposon library (PA14NR) to identify dominant-negative mutants displaying phage-resistant phenotypes. Our screening process revealed 78 mutants capable of thriving in the presence of phages, with 23 of them carrying insertions in genes associated with membrane composition. Six mutants exhibited total resistance to phage infection. Transposon insertions were found in genes known to be linked to phage-resistance such as galU and a glycosyl transferase gene, as well as novel genes such as mexB, lasB, and two hypothetical proteins. Functional experiments demonstrated that these genes played pivotal roles in phage adsorption and biofilm formation, indicating that altering the bacterial membrane composition commonly leads to phage resistance in P. aeruginosa. Importantly, these mutants displayed phenotypic trade-offs, as their resistance to phages inversely affected antibiotic resistance and hindered biofilm formation, shedding light on the complex interplay between phage susceptibility and bacterial fitness. This study highlights the potential of transposon mutant libraries and forward-genetic screens in identifying key genes involved in phage-host interactions and resistance mechanisms. These findings support the development of innovative strategies for combating antibiotic-resistant pathogens.
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- 2024
- Full Text
- View/download PDF
3. Effects of MAT1-2 Spore Ratios on Fruiting Body Formation and Degeneration in the Heterothallic Fungus Cordyceps militaris
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Tao Xuan Vu, Hanh-Dung Thai, Bich-Hang Thi Dinh, Huong Thi Nguyen, Huyen Thi Phuong Tran, Khanh-Linh Thi Bui, Tram Bao Tran, Hien Thanh Pham, Linh Thi Dam Mai, Diep Hong Le, Huy Quang Nguyen, and Van-Tuan Tran
- Subjects
Cordyceps militaris ,degeneration ,fruiting body formation ,heterokaryotic strains ,heterothallic fungus ,mating-type loci ,Biology (General) ,QH301-705.5 - Abstract
The medicinal mushroom Cordyceps militaris is widely exploited in traditional medicine and nutraceuticals in Asian countries. However, fruiting body production in C. militaris is facing degeneration through cultivation batches, and the molecular mechanism of this phenomenon remains unclear. This study showed that fruiting body formation in three different C. militaris strains, namely G12, B12, and HQ1, severely declined after three successive culturing generations using the spore isolation method. PCR analyses revealed that these strains exist as heterokaryons and possess both the mating-type loci, MAT1-1 and MAT1-2. Further, monokaryotic isolates carrying MAT1-1 or MAT1-2 were successfully separated from the fruiting bodies of all three heterokaryotic strains. A spore combination of the MAT1-1 monokaryotic isolate and the MAT1-2 monokaryotic isolate promoted fruiting body formation, while the single monokaryotic isolates could not do that themselves. Notably, we found that changes in ratios of the MAT1-2 spores strongly influenced fruiting body formation in these strains. When the ratios of the MAT1-2 spores increased to more than 15 times compared to the MAT1-1 spores, the fruiting body formation decreased sharply. In contrast, when MAT1-1 spores were increased proportionally, fruiting body formation was only slightly reduced. Our study also proposes a new solution to mitigate the degeneration in the heterokaryotic C. militaris strains caused by successive culturing generations.
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- 2023
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4. Genetic, cellular, and structural characterization of the membrane potential-dependent cell-penetrating peptide translocation pore
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Evgeniya Trofimenko, Gianvito Grasso, Mathieu Heulot, Nadja Chevalier, Marco A Deriu, Gilles Dubuis, Yoan Arribat, Marc Serulla, Sebastien Michel, Gil Vantomme, Florine Ory, Linh Chi Dam, Julien Puyal, Francesca Amati, Anita Lüthi, Andrea Danani, and Christian Widmann
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cell-penetrating peptides ,water pores ,potassium channels ,membrane potential ,TAT ,In silico modeling ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Cell-penetrating peptides (CPPs) allow intracellular delivery of bioactive cargo molecules. The mechanisms allowing CPPs to enter cells are ill-defined. Using a CRISPR/Cas9-based screening, we discovered that KCNQ5, KCNN4, and KCNK5 potassium channels positively modulate cationic CPP direct translocation into cells by decreasing the transmembrane potential (Vm). These findings provide the first unbiased genetic validation of the role of Vm in CPP translocation in cells. In silico modeling and live cell experiments indicate that CPPs, by bringing positive charges on the outer surface of the plasma membrane, decrease the Vm to very low values (–150 mV or less), a situation we have coined megapolarization that then triggers formation of water pores used by CPPs to enter cells. Megapolarization lowers the free energy barrier associated with CPP membrane translocation. Using dyes of varying dimensions in CPP co-entry experiments, the diameter of the water pores in living cells was estimated to be 2 (–5) nm, in accordance with the structural characteristics of the pores predicted by in silico modeling. Pharmacological manipulation to lower transmembrane potential boosted CPP cellular internalization in zebrafish and mouse models. Besides identifying the first proteins that regulate CPP translocation, this work characterized key mechanistic steps used by CPPs to cross cellular membranes. This opens the ground for strategies aimed at improving the ability of cells to capture CPP-linked cargos in vitro and in vivo.
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- 2021
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5. Effects of MAT1-2 Spore Ratios on Fruiting Body Formation and Degeneration in the Heterothallic Fungus Cordyceps militaris
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Vu, Tao Xuan, primary, Thai, Hanh-Dung, additional, Dinh, Bich-Hang Thi, additional, Nguyen, Huong Thi, additional, Tran, Huyen Thi Phuong, additional, Bui, Khanh-Linh Thi, additional, Tran, Tram Bao, additional, Pham, Hien Thanh, additional, Mai, Linh Thi Dam, additional, Le, Diep Hong, additional, Nguyen, Huy Quang, additional, and Tran, Van-Tuan, additional
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- 2023
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6. Engineered Lysins With Customized Lytic Activities Against Enterococci and Staphylococci
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Hana Sakina Binte Muhammad Jai, Linh Chi Dam, Lowella Servito Tay, Jodi Jia Wei Koh, Hooi Linn Loo, Kimberly A. Kline, and Boon Chong Goh
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lysin ,Enterococcus ,Staphylococcus ,endolysin ,antibiotic alternatives ,antimicrobial resistance ,Microbiology ,QR1-502 - Abstract
The emergence of multidrug-resistant bacteria has made minor bacterial infections incurable with many existing antibiotics. Lysins are phage-encoded peptidoglycan hydrolases that have demonstrated therapeutic potential as a novel class of antimicrobials. The modular architecture of lysins enables the functional domains – catalytic domain (CD) and cell wall binding domain (CBD) – to be shuffled to create novel lysins. The CD is classically thought to be only involved in peptidoglycan hydrolysis whereas the CBD dictates the lytic spectrum of a lysin. While there are many studies that extended the lytic spectrum of a lysin by domain swapping, few have managed to introduce species specificity in a chimeric lysin. In this work, we constructed two chimeric lysins by swapping the CBDs of two parent lysins with different lytic spectra against enterococci and staphylococci. We showed that these chimeric lysins exhibited customized lytic spectra distinct from the parent lysins. Notably, the chimeric lysin P10N-V12C, which comprises a narrow-spectrum CD fused with a broad-spectrum CBD, displayed species specificity not lysing Enterococcus faecium while targeting Enterococcus faecalis and staphylococci. Such species specificity can be attributed to the narrow-spectrum CD of the chimeric lysin. Using flow cytometry and confocal microscopy, we found that the E. faecium cells that were treated with P10N-V12C are less viable with compromised membranes yet remained morphologically intact. Our results suggest that while the CBD is a major determinant of the lytic spectrum of a lysin, the CD is also responsible in the composition of the final lytic spectrum, especially when it pertains to species-specificity.
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- 2020
- Full Text
- View/download PDF
7. Novel Phage Lysin Abp013 against Acinetobacter baumannii
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Joash Jun Keat Chu, Wee Han Poh, Nabilah Taqiah Binte Hasnuddin, En Yi Hew, Linh Chi Dam, Abbas El Sahili, Scott A. Rice, and Boon Chong Goh
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phage lysin ,endolysin ,multidrug resistance ,Acinetobacter baumannii ,novel antibacterial agent ,Therapeutics. Pharmacology ,RM1-950 - Abstract
As antimicrobial resistance (AMR) continues to pose an ever-growing global health threat, propelling us into a post-antibiotic era, novel alternative therapeutic agents are urgently required. Lysins are bacteriophage-encoded peptidoglycan hydrolases that display great potential as a novel class of antimicrobials for therapeutics. While lysins against Gram-positive bacteria are highly effective when applied exogenously, it is challenging for lysins to access and cleave the peptidoglycan of Gram-negative bacteria due to their outer membrane. In this study, we identify a novel phage lysin Abp013 against Acinetobacter baumannii. Abp013 exhibited significant lytic activity against multidrug-resistant strains of A. baumannii. Notably, we found that Abp013 was able to tolerate the presence of human serum by up to 10%. Using confocal microscopy and LIVE/DEAD staining, we show that Abp013 can access and kill the bacterial cells residing in the biofilm. These results highlight the intrinsic bacteriolytic property of Abp013, suggesting the promising use of Abp013 as a novel therapeutic agent.
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- 2022
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8. Rifaximin potentiates clarithromycin against Mycobacterium abscessus in vitro and in zebrafish
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Boon Chong Goh, Simon Larsson, Linh Chi Dam, Yan Han Sharon Ling, Wei Lin Patrina Chua, R Abirami, Samsher Singh, Jun Long Ernest Ong, Jeanette W P Teo, Peiying Ho, Philip W Ingham, Kevin Pethe, and Peter C Dedon
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Microbiology (medical) ,Infectious Diseases ,Immunology ,Immunology and Allergy ,Microbiology - Abstract
Background Mycobacterium abscessus is a non-tuberculous mycobacterium (NTM) that causes chronic pulmonary infections. Because of its extensive innate resistance to numerous antibiotics, treatment options are limited, often resulting in poor clinical outcomes. Current treatment regimens usually involve a combination of antibiotics, with clarithromycin being the cornerstone of NTM treatments. Objectives To identify drug candidates that exhibit synergistic activity with clarithromycin against M. abscessus. Methods We performed cell-based phenotypic screening of a compound library against M. abscessus induced to become resistant to clarithromycin. Furthermore, we evaluated the toxicity and efficacy of the top compound in a zebrafish embryo infection model. Results The screen revealed rifaximin as a clarithromycin potentiator. The combination of rifaximin and clarithromycin was synergistic and bactericidal in vitro and potent in the zebrafish model. Conclusions The data indicate that the rifaximin/clarithromycin combination is promising to effectively treat pulmonary NTM infections.
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- 2023
9. inPhocus: Current State and Challenges of Phage Research in Singapore
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Navin Kumar Verma, Si Jia Tan, John Chen, Hanrong Chen, Muhammad Hafiz Ismail, Scott A. Rice, Pablo Bifani, Sukumar Hariharan, Vivek Daniel Paul, Bharathi Sriram, Linh Chi Dam, Chia Ching Chan, Peiying Ho, Boon Chong Goh, Shimin Jasmine Chung, Kenneth Choon Meng Goh, Shu Hua Thong, Andrea Lay-Hoon Kwa, Adam Ostrowski, Thet Tun Aung, Halimah Razali, Shermaine W.Y. Low, Mani Shankar Bhattacharyya, Hemant K. Gautam, Rajamani Lakshminarayanan, Thomas Sicheritz-Pontén, Martha R.J. Clokie, Wilfried Moreira, Maurice Adrianus Monique van Steensel, Lee Kong Chian School of Medicine (LKCMedicine), Asian School of the Environment, Singapore National Eye Centre, Singapore Centre for Environmental Life Sciences and Engineering, and NTU Institute for Health Technologies
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metagenomics ,Biological sciences::Microbiology [Science] ,filamentous phages ,recombinant phage proteins ,Ectolysin ,Antimicrobial Resistance ,Perspectives - Abstract
Bacteriophages and phage-derived proteins are a promising class of antibacterial agents that experience a growing worldwide interest. To map ongoing phage research in Singapore and neighboring countries, Lee Kong Chian School of Medicine, Nanyang Technological University Singapore (NTU) and Yong Loo Lin School of Medicine, National University of Singapore (NUS) recently co-organized a virtual symposium on Bacteriophage and Bacteriophage-Derived Technologies, which was attended by more than 80 participants. Topics were discussed relating to phage life cycles, diversity, the roles of phages in biofilms and the human gut microbiome, engineered phage lysins to combat polymicrobial infections in wounds, and the challenges and prospects of clinical phage therapy. This perspective summarizes major points discussed during the symposium and new perceptions that emerged after the panel discussion. Agency for Science, Technology and Research (A*STAR) Ministry of Health (MOH) National Medical Research Council (NMRC) National Research Foundation (NRF) Following supports are acknowledged: N.K.V. to LeeKong Chian School of Medicine Strategic Academic In-itiative Grant (L0494003); H.C. to A*STAR Grant(C210812044); P.H., B.C.G., and W.M. to Singapore Na-tional Research Foundation (NRF)’s Intra-Campus for Re-search Excellence and Technological Enterprise (CREATE)Seed Collaboration Grant; P.H. and B.C.G. to Singapore-MIT Alliance for Research and Technology (SMART) An-timicrobial Resistance Interdisciplinary Group funded by theNRF under its CREATE program; T.A.A. to NUSMedpostdoctoral fellowship (NUHSRO/2019/046/PDF/19); J.P.B.to National University Hospital System Seed Fund (NUHSRO/2019/050/T1/Seed-Mar/03) and SMART (ING-001014 BIO);W.M. to Singapore Ministry of Health’s National MedicalResearch Council (OFIRG21jun-0038); M.A.M.V.S. to Na-tional Health Innovation Centre Singapore Innovation to De-velop Grant (NHIC-I2D-2104625).
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- 2022
10. The Impact of Capital Structure on Firm Performance: Case of Listed Firms in Processing and Manufacturing Industry in Vietnam
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Linh. H. Do, Khai. T. Luong, Anh. N. H. Mai, Linh. A. Dam, Ha. T. L. Pham, and Nga. T. Nguyen
- Abstract
The authors aim to examine the impact of capital structure on the performance of manufacturing and processing companies listed on the stock exchange in Vietnam during the period of 2015 - 2020. Through the FGLS model, the study found that the ratio of short-term debt to total assets (STDA) and the ratio of long-term debt to total assets (LTDA) have a negative impact on the performance expressed through ROA. In contrast, in terms of Tobin's Q, STDA has no significant relationship with firm performance but it is negatively impacted by LTDA. The two control variables GROWTH and SIZE both have a positive impact on ROA and Tobin's Q. Based on findings, some recommendations for manufacturing and processing companies to enhance their profitability in the future.
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- 2022
11. A new and efficient approach for construction of uridine/uracil auxotrophic mutants in the filamentous fungus Aspergillus oryzae using Agrobacterium tumefaciens-mediated transformation
- Author
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Nguyen, Khuyen Thi, Ho, Quynh Ngoc, Do, Loc Thi Binh Xuan, Mai, Linh Thi Dam, Pham, Duc-Ngoc, Tran, Huyen Thi Thanh, Le, Diep Hong, Nguyen, Huy Quang, and Tran, Van-Tuan
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- 2017
- Full Text
- View/download PDF
12. Novel Phage Lysin Abp013 against
- Author
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Joash Jun Keat, Chu, Wee Han, Poh, Nabilah Taqiah Binte, Hasnuddin, En Yi, Hew, Linh Chi, Dam, Abbas El, Sahili, Scott A, Rice, and Boon Chong, Goh
- Abstract
As antimicrobial resistance (AMR) continues to pose an ever-growing global health threat, propelling us into a post-antibiotic era, novel alternative therapeutic agents are urgently required. Lysins are bacteriophage-encoded peptidoglycan hydrolases that display great potential as a novel class of antimicrobials for therapeutics. While lysins against Gram-positive bacteria are highly effective when applied exogenously, it is challenging for lysins to access and cleave the peptidoglycan of Gram-negative bacteria due to their outer membrane. In this study, we identify a novel phage lysin Abp013 against
- Published
- 2021
13. Author response: Genetic, cellular, and structural characterization of the membrane potential-dependent cell-penetrating peptide translocation pore
- Author
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Evgeniya Trofimenko, Gianvito Grasso, Mathieu Heulot, Nadja Chevalier, Marco A Deriu, Gilles Dubuis, Yoan Arribat, Marc Serulla, Sebastien Michel, Gil Vantomme, Florine Ory, Linh Chi Dam, Julien Puyal, Francesca Amati, Anita Lüthi, Andrea Danani, and Christian Widmann
- Published
- 2021
14. Author Reply to Peer Reviews of Genetic, cellular and structural characterization of the membrane potential-dependent cell-penetrating peptide translocation pore
- Author
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Christian Widmann, Andrea Danani, Anita Lüthi, Francesca Amati, Julien Puyal, Linh Chi Dam, Florine Ory, Gil Vantomme, Sébastien Michel, Marc Serulla, Yoan Arribat, Gilles Dubuis, Marco A. Deriu, Nadja Chevalier, Mathieu Heulot, Gianvito Grasso, and Evgeniya Trofimenko
- Published
- 2021
15. Engineered Lysins With Customized Lytic Activities Against Enterococci and Staphylococci
- Author
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Hooi Linn Loo, Hana Sakina Binte Muhammad Jai, Jodi Jia Wei Koh, Lowella Servito Tay, Boon Chong Goh, Linh Chi Dam, Kimberly A. Kline, School of Biological Sciences, and Singapore Centre for Environmental Life Sciences and Engineering
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Microbiology (medical) ,Staphylococcus ,Lysin ,lcsh:QR1-502 ,Microbiology ,complex mixtures ,Enterococcus faecalis ,lcsh:Microbiology ,Cell wall ,chemistry.chemical_compound ,lysin ,antimicrobial resistance ,domain swapping ,antibiotic alternatives ,Original Research ,biology ,Biological sciences [Science] ,biology.organism_classification ,chemistry ,Lytic cycle ,Enterococcus ,endolysin ,bacteria ,Peptidoglycan ,Binding domain ,Enterococcus faecium - Abstract
The emergence of multidrug-resistant bacteria has made minor bacterial infections incurable with many existing antibiotics. Lysins are phage-encoded peptidoglycan hydrolases that have demonstrated therapeutic potential as a novel class of antimicrobials. The modular architecture of lysins enables the functional domains – catalytic domain (CD) and cell wall binding domain (CBD) – to be shuffled to create novel lysins. The CD is classically thought to be only involved in peptidoglycan hydrolysis whereas the CBD dictates the lytic spectrum of a lysin. While there are many studies that extended the lytic spectrum of a lysin by domain swapping, few have managed to introduce species specificity in a chimeric lysin. In this work, we constructed two chimeric lysins by swapping the CBDs of two parent lysins with different lytic spectra against enterococci and staphylococci. We showed that these chimeric lysins exhibited customized lytic spectra distinct from the parent lysins. Notably, the chimeric lysin P10N-V12C, which comprises a narrow-spectrum CD fused with a broad-spectrum CBD, displayed species specificity not lysing Enterococcus faecium while targeting Enterococcus faecalis and staphylococci. Such species specificity can be attributed to the narrow-spectrum CD of the chimeric lysin. Using flow cytometry and confocal microscopy, we found that the E. faecium cells that were treated with P10N-V12C are less viable with compromised membranes yet remained morphologically intact. Our results suggest that while the CBD is a major determinant of the lytic spectrum of a lysin, the CD is also responsible in the composition of the final lytic spectrum, especially when it pertains to species-specificity. National Research Foundation (NRF) Singapore-MIT Alliance for Research and Technology (SMART) SMART Innovation Centre Published version This work has been funded by the Innovation Centre and Antimicrobial Resistance IRG of the Singapore-MIT Alliance for Research and Technology Centre, supported by the National Research Foundation, Prime Minister’s Office, Singapore under its Campus for Research Excellence and Technological Enterprise (CREATE) Program.
- Published
- 2020
16. A highly efficient Agrobacterium tumefaciens-mediated transformation system for the postharvest pathogen Penicillium digitatum using DsRed and GFP to visualize citrus host colonization
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Tri-Thuc Bui, Linh Thi Dam Mai, Van-Tuan Tran, Binh Xuan Ngo, Tao Xuan Vu, Diep Hong Le, Tho Tien Ngo, Ha Thi Viet Bui, and Huy Quang Nguyen
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DNA, Bacterial ,Genetics, Microbial ,0301 basic medicine ,Microbiology (medical) ,Citrus ,Agrobacterium ,Genetic Vectors ,Green Fluorescent Proteins ,Virulence ,Microbial Sensitivity Tests ,Microbiology ,Fungal Proteins ,03 medical and health sciences ,chemistry.chemical_compound ,Transformation, Genetic ,Gene Expression Regulation, Fungal ,Humans ,Molecular Biology ,Selectable marker ,Plant Diseases ,Penicillium digitatum ,biology ,fungi ,Gene Transfer Techniques ,Penicillium ,food and beverages ,Agrobacterium tumefaciens ,biology.organism_classification ,Luminescent Proteins ,Mutagenesis, Insertional ,Transformation (genetics) ,030104 developmental biology ,Vietnam ,chemistry ,Cinnamates ,Host-Pathogen Interactions ,Streptothricins ,Nourseothricin ,Hygromycin B ,Transformation efficiency - Abstract
Penicillium digitatum is a major postharvest pathogen of citrus crops. This fungus broadly spreads worldwide and causes green mold disease, which results in severe losses for citrus production. Understanding of the citrus infection by P. digitatum may help develop effective strategies for controlling this pathogen. In this study, we have characterized a virulent strain of P. digitatum isolated in Vietnam and established a highly efficient Agrobacterium tumefaciens-mediated transformation (ATMT) system for this fungal strain with two newly constructed binary vectors. These binary vectors harbor dominant selectable markers for hygromycin or nourseothricin resistance, and expression cassettes for the red fluorescent protein (DsRed) or the green fluorescent protein (GFP), respectively. Using the established ATMT system, the transformation efficiency of the Vietnamese strain could reach a very high yield of 1240±165 transformants per 106 spores. Interestingly, we found that GFP is much better than DsRed for in situ visualization of citrus fruit colonization by the fungus. Additionally, we showed that the transformation system can also be used to generate T-DNA insertion mutants for screening non-pathogenic or less virulent strains. Our work provides a new platform including a virulent tropical strain of P. digitatum, an optimized ATMT method and two newly constructed binary vectors for investigation of the postharvest pathogen. This platform will help develop strategies to dissect molecular mechanisms of host-pathogen interactions in more detail as well as to identify potential genes of pathogenicity by either insertional mutagenesis or gene disruption in this important pathogenic fungus.
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- 2018
17. Effects of inoculation sources on the enrichment and performance of anode bacterial consortia in sensor typed microbial fuel cells
- Author
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T.Q. Nguyen, Huong Nguyen, Huyen Thi Thanh Tran, Linh Thi Dam Mai, Linh Hoang Khanh Nguyen, Hai Pham, Bong Nguyen, Linh Nong, and Phuong V. Tran
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lcsh:Medical technology ,Microbial fuel cell ,biology ,Inoculation ,lcsh:Biotechnology ,Pseudomonas ,bioelectrochemical system ,lcsh:TP155-156 ,biology.organism_classification ,Bacterial composition ,Pseudomonas sp ,Microbiology ,Anode ,microbial fuel cell ,Activated sludge ,lcsh:R855-855.5 ,Wastewater ,lcsh:TP248.13-248.65 ,Environmental chemistry ,lcsh:Chemical engineering ,sensor typed microbial fuel cell ,anode bacterial consortia ,Temperature gradient gel electrophoresis - Abstract
Microbial fuel cells are a recently emerging technology that promises a number of applications in energy recovery, environmental treatment and monitoring. In this study, we investigated the effect of inoculating sources on the enrichment of electrochemically active bacterial consortia in sensor-typed microbial fuel cells (MFCs). Several MFCs were constructed, operated with modified artificial wastewater and inoculated with different microbial sources from natural soil, natural mud, activated sludge, wastewater and a mixture of those sources. After enrichment, the MFCs inoculated with the natural soil source generated higher and more stable currents (0.53±0.03 mA), in comparisons with the MFCs inoculated with the other sources. The results from denaturing gradient gel electrophoresis (DGGE) showed that there were significant changes in bacterial composition from the original inocula to the enriched consortia. Even more interestingly, Pseudomonas sp. was found dominant in the natural soil source and also in the corresponding enriched consortium. The interactions between Pseudomonas sp. and other species in such a community are probably the key for the effective and stable performance of the MFCs.
- Published
- 2016
18. A newly constructed Agrobacterium-mediated transformation system revealed the influence of nitrogen sources on the function of the LaeA regulator in Penicillium chrysogenum
- Author
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Vu, Tao Xuan, primary, Vu, Ha Hong, additional, Nguyen, Giang Thu, additional, Vu, Hien Thu, additional, Mai, Linh Thi Dam, additional, Pham, Duc-Ngoc, additional, Le, Diep Hong, additional, Nguyen, Huy Quang, additional, and Tran, Van-Tuan, additional
- Published
- 2019
- Full Text
- View/download PDF
19. A new and efficient approach for construction of uridine/uracil auxotrophic mutants in the filamentous fungus Aspergillus oryzae using Agrobacterium tumefaciens-mediated transformation
- Author
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Loc Thi Binh Xuan Do, Khuyen Thi Nguyen, Duc-Ngoc Pham, Huy Quang Nguyen, Diep Hong Le, Quynh Ngoc Ho, Linh Thi Dam Mai, Van-Tuan Tran, and Huyen Thi Thanh Tran
- Subjects
0301 basic medicine ,Physiology ,Agrobacterium ,Auxotrophy ,Aspergillus oryzae ,030106 microbiology ,Genes, Fungal ,Biology ,Applied Microbiology and Biotechnology ,Microbiology ,03 medical and health sciences ,chemistry.chemical_compound ,Transformation, Genetic ,Uracil ,Uridine ,Selectable marker ,food and beverages ,General Medicine ,Agrobacterium tumefaciens ,biology.organism_classification ,Transformation (genetics) ,Mutagenesis, Insertional ,chemistry ,Genetic Engineering ,Gene Deletion ,Biotechnology - Abstract
Aspergillus oryzae is a filamentous fungus widely used in food industry and as a microbial cell factory for recombinant protein production. Due to the inherent resistance of A. oryzae to common antifungal compounds, genetic transformation of this mold usually requires auxotrophic mutants. In this study, we show that Agrobacterium tumefaciens-mediated transformation (ATMT) method is very efficient for deletion of the pyrG gene in different Aspergillus oryzae wild-type strains to generate uridine/uracil auxotrophic mutants. Our data indicated that all the obtained uridine/uracil auxotrophic transformants, which are 5- fluoroorotic acid (5-FOA) resistant, exist as the pyrG deletion mutants. Using these auxotrophic mutants and the pyrG selectable marker for genetic transformation via A. tumefaciens, we could get about 1060 transformants per 106 fungal spores. In addition, these A. oryzae mutants were also used successfully for expression of the DsRed fluorescent reporter gene under control of the A. oryzae amyB promoter by the ATMT method, which resulted in obvious red transformants on agar plates. Our work provides a new and effective approach for constructing the uridine/uracil auxotrophic mutants in the importantly industrial fungus A. oryzae. This strategy appears to be applicable to other filamentous fungi to develop similar genetic transformation systems based on auxotrophic/nutritional markers for food-grade recombinant applications.
- Published
- 2017
20. A highly efficient Agrobacterium tumefaciens-mediated transformation system for the postharvest pathogen Penicillium digitatum using DsRed and GFP to visualize citrus host colonization
- Author
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Vu, Tao Xuan, primary, Ngo, Tho Tien, additional, Mai, Linh Thi Dam, additional, Bui, Tri-Thuc, additional, Le, Diep Hong, additional, Bui, Ha Thi Viet, additional, Nguyen, Huy Quang, additional, Ngo, Binh Xuan, additional, and Tran, Van-Tuan, additional
- Published
- 2018
- Full Text
- View/download PDF
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