5 results on '"Lichi Li"'
Search Results
2. INDITTO2 transposon conveys auxin-mediated DRO1 transcription for rice drought avoidance
- Author
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Jiang Li, Huang Huichuan, Sheng Peng, Kuixiu Li, Zhili Zuo, Luo Qiong, Qijing Fu, Xuan Zhou, Dong Wang, C. Ma, Hao Luo, Lixia Wu, Chongyu Luo, Changning Liu, Zhao Yiting, Han Li, Li Jing, Qian Dong, Yanfang Zhang, Jiří Friml, Chengyun Li, Lei Wang, Zhang Lina, Jie Qian, Baolin Yao, Jing Yang, Lichi Li, Si Yu, Youchun Li, Saijie Li, Du Yunlong, Shuanglu Zhao, Xi Jiang, and Xiahong He
- Subjects
0106 biological sciences ,0301 basic medicine ,Transposable element ,Physiology ,Response element ,Plant Science ,Biology ,01 natural sciences ,Genome ,Plant Roots ,03 medical and health sciences ,Auxin ,Gene Expression Regulation, Plant ,Promoter Regions, Genetic ,Gene ,Plant Proteins ,chemistry.chemical_classification ,Plant evolution ,Genetics ,Dehydration ,Indoleacetic Acids ,fungi ,food and beverages ,Promoter ,Oryza ,Plants, Genetically Modified ,Adaptation, Physiological ,Droughts ,030104 developmental biology ,chemistry ,Seedlings ,Mutation ,DNA Transposable Elements ,Adaptation ,010606 plant biology & botany - Abstract
Transposable elements exist widely throughout plant genomes and play important roles in plant evolution. Auxin is an important regulator that is traditionally associated with root development and drought stress adaptation. The DEEPER ROOTING 1 (DRO1) gene is a key component of rice drought avoidance. Here, we identified a transposon that acts as an autonomous auxin-responsive promoter and its presence at specific genome positions conveys physiological adaptations related to drought avoidance. Rice varieties with high and auxin-mediated transcription of DRO1 in the root tip show deeper and longer root phenotypes and are thus better adapted to drought. The INDITTO2 transposon contains an auxin response element and displays auxin-responsive promoter activity; it is thus able to convey auxin regulation of transcription to genes in its proximity. In the rice Acuce, which displays DRO1-mediated drought adaptation, the INDITTO2 transposon was found to be inserted at the promoter region of the DRO1 locus. Transgenesis-based insertion of the INDITTO2 transposon into the DRO1 promoter of the non-adapted rice variety Nipponbare was sufficient to promote its drought avoidance. Our data identify an example of how transposons can act as promoters and convey hormonal regulation to nearby loci, improving plant fitness in response to different abiotic stresses. This article is protected by copyright. All rights reserved.
- Published
- 2021
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3. A Web Service for Scholarly Big Data Information Extraction
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Patrick C. Shih, Madian Khabsa, Lichi Li, C. Lee Giles, Jian Wu, and Kyle Williams
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Information retrieval ,Database ,business.industry ,Computer science ,Big data ,Document management system ,Digital library ,computer.software_genre ,Metadata ,Information extraction ,Workflow ,Header ,Web service ,business ,computer - Abstract
The automatic extraction of metadata and other information from scholarly documents is a common task in academic digital libraries, search engines, and document management systems to allow for the management and categorization of documents and for search to take place. A Web-accessible API can simplify this extraction by providing a single point of operation for extraction that can be incorporated into multiple document workflows without the need for each workflow to implement and support its own extraction functionality. In this paper, we describe CiteSeerExtractor, a RESTful API for scholarly information extraction that exploits the fact that there is duplication in scholarly big data and makes use of a near duplicate matching backend. The backend stores previously extracted metadata and avoids extracting metadata from a document if it has already been extracted before. We describe the design, implementation, and functionality of CiteSeerExtractor and show how the duplicate document matching results in a difference of 8.46% in the time required to extract header and citation information from approximately 3.5 million documents compared to a baseline.
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- 2014
4. Celecoxib and Etoricoxib may reduce risk of ischemic stroke in patients with rheumatoid arthritis: A nationwide retrospective cohort study
- Author
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Acer I-Hung Chen, Yung-Heng Lee, Wuu-Tsun Perng, Jeng-Yuan Chiou, Yu-Hsun Wang, Lichi Lin, James Cheng-Chung Wei, and Hsi-Kai Tsou
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non-steroidal anti-inflammatory drugs (NSAIDs) ,rheumatoid arthritis ,risk ,ischemic stroke (IS) ,Celecoxib-compound CID: 2662 ,Etoricoxib (CID: 123619) ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Background and purposePrevious studies reported conflicting results about the risk of ischemic stroke associated with the use of non-steroidal anti-inflammatory drugs (NSAIDs) in patients with rheumatoid arthritis (RA). We aimed to investigate two specific COX-2 inhibitors, Celecoxib and Etoricoxib, and their corresponding effects on the risk of ischemic stroke in patients with RA.Patients and methods10,857 patients newly diagnosed with RA were identified and sampled from the Taiwanese National Health Insurance Research Database during the period from 2001 to 2009. The identification of RA was based on the criteria of ICD-9-CM diagnosis code 714.0. Patients diagnosed with cerebrovascular disease and those receiving RA treatment prior to the first diagnosis of RA were excluded. Study endpoint was ischemic stroke, defined by ICD-9-CM code. Cox proportional hazard models and Kaplan Meier curves were used to reveal covariates and differences by drugs in the risk of ischemic stroke. Dosages for Celecoxib were defined as ≤ 200 and >200 mg/day; those for Etoricoxib were 0 and >0 mg/day.ResultsAmong 7,904 RA patients, 6,669 did not take Celecoxib and 564 (8.46%) of them experienced an ischemic stroke event. Of the 597 individuals who took ≤ 200 mg/day of Celecoxib, 58 (9.72%) had strokes. Of the 638 patients who took >200 mg/day of Celecoxib, 38 (5.96%) eventually experienced a stroke. Among the 7,681 patients who did not take Etoricoxib, 654 (8.51%) experienced an ischemic stroke, while 6 (2.69%) in 223 patients who consumed Etoricoxib had a stroke event. Consuming more than 200 mg of Celecoxib per day for
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- 2022
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5. The effect of anti-rheumatic medications for coronary artery diseases risk in patients with rheumatoid arthritis might be changed over time: A nationwide population-based cohort study.
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Yao-Min Hung, Lichi Lin, Chyong-Mei Chen, Jeng-Yuan Chiou, Yu-Hsun Wang, Paul Yung-Pou Wang, and James Cheng-Chung Wei
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Medicine ,Science - Abstract
To determine whether anti-rheumatic drug usage is associated with risk of coronary artery diseases (CAD) in incident Rheumatoid Arthritis (RA) patients.Data were obtained from the Taiwan National Health Insurance Research Database. The study cohort comprised 6260 patients who were newly diagnosed with RA between 2001-2010. The study endpoint was occurrence of CAD according to the ICD-9-CM codes. We used the WHO Defined Daily Dose (DDD) as a tool to assess the drugs exposure. The Cox proportional hazards regression model was used to estimate the hazard ratio (HR) of disease after controlling for demographic and other co-morbidities. When the proportionality assumption is violated, a spline curve of the Scaled Schoenfeld residuals is fitted to demonstrate the estimated effect on CAD over time for drug usage.Among RA patients, use of celecoxib, and etoricoxib was associated with significantly decreased incidence of CAD. The adjusted HR(95% CI) of CAD for low-dose celecoxib (DDD≦1) and high-dose user were 0.47(0.34, 0.65) and 0.37(0.24, 0.58) during the 4 year follow-up time; however, it became 0.98(0.70, 1.37) and1.29(0.85, 1.95). Adjusted HR(95% CI) of CAD for etoricoxib users remained 0.47(0.26, 0.84).This study revealed association of decreased CAD risk in RA patients taking 2 different kinds of COX-2i in comparison with nonusers. The effect might be changed over time, after about 4 years.
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- 2017
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