20 results on '"Lia Scarabottolo"'
Search Results
2. Advancing drug discovery through assay development: a survey of tool compounds within the human solute carrier superfamily
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Daniela Digles, Alvaro Ingles-Prieto, Vojtech Dvorak, Tamara A. M. Mocking, Ulrich Goldmann, Andrea Garofoli, Evert J. Homan, Alberto Di Silvio, Lucia Azzollini, Francesca Sassone, Mario Fogazza, Felix Bärenz, Antje Pommereau, Yasmin Zuschlag, Jasper F. Ooms, Jeppe Tranberg-Jensen, Jesper S. Hansen, Josefina Stanka, Hubert J. Sijben, Helena Batoulis, Eckhard Bender, Riccardo Martini, Adriaan P. IJzerman, David B. Sauer, Laura H. Heitman, Vania Manolova, Juergen Reinhardt, Alexander Ehrmann, Philipp Leippe, Gerhard F. Ecker, Kilian V. M. Huber, Thomas Licher, Lia Scarabottolo, Tabea Wiedmer, and Giulio Superti-Furga
- Subjects
solute carrier ,transport protein ,tool compound ,KNIME ,transport assay ,Therapeutics. Pharmacology ,RM1-950 - Abstract
With over 450 genes, solute carriers (SLCs) constitute the largest transporter superfamily responsible for the uptake and efflux of nutrients, metabolites, and xenobiotics in human cells. SLCs are associated with a wide variety of human diseases, including cancer, diabetes, and metabolic and neurological disorders. They represent an important therapeutic target class that remains only partly exploited as therapeutics that target SLCs are scarce. Additionally, many small molecules reported in the literature to target SLCs are poorly characterized. Both features may be due to the difficulty of developing SLC transport assays that fulfill the quality criteria for high-throughput screening. Here, we report one of the main limitations hampering assay development within the RESOLUTE consortium: the lack of a resource providing high-quality information on SLC tool compounds. To address this, we provide a systematic annotation of tool compounds targeting SLCs. We first provide an overview on RESOLUTE assays. Next, we present a list of SLC-targeting compounds collected from the literature and public databases; we found that most data sources lacked specificity data. Finally, we report on experimental tests of 19 selected compounds against a panel of 13 SLCs from seven different families. Except for a few inhibitors, which were active on unrelated SLCs, the tested inhibitors demonstrated high selectivity for their reported targets. To make this knowledge easily accessible to the scientific community, we created an interactive dashboard displaying the collected data in the RESOLUTE web portal (https://re-solute.eu). We anticipate that our open-access resources on assays and compounds will support the development of future drug discovery campaigns for SLCs.
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- 2024
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3. Development of a live cell assay for the zinc transporter ZnT8
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Lucia Azzollini, Dolores Del Prete, Gernot Wolf, Christoph Klimek, Mattia Saggioro, Fernanda Ricci, Eirini Christodoulaki, Tabea Wiedmer, Alvaro Ingles-Prieto, Giulio Superti-Furga, and Lia Scarabottolo
- Subjects
Type 2 diabetes ,ZnT ,Zinc transporter ,SLC30a8 ,Transport assay ,SLC ,Medicine (General) ,R5-920 ,Biotechnology ,TP248.13-248.65 - Abstract
Zinc is an essential trace element that is involved in many biological processes and in cellular homeostasis. In pancreatic β-cells, zinc is crucial for the synthesis, processing, and secretion of insulin, which plays a key role in glucose homeostasis and which deficiency is the cause of diabetes. The accumulation of zinc in pancreatic cells is regulated by the solute carrier transporter SLC30A8 (or Zinc Transporter 8, ZnT8), which transports zinc from cytoplasm in intracellular vesicles. Allelic variants of SLC30A8 gene have been linked to diabetes. Given the physiological intracellular localization of SLC30A8 in pancreatic β-cells and the ubiquitous endogenous expression of other Zinc transporters in different cell lines that could be used as cellular model for SLC30A8 recombinant over-expression, it is challenging to develop a functional assay to measure SLC30A8 activity. To achieve this goal, we have firstly generated a HEK293 cell line stably overexpressing SLC30A8, where the over-expression favors the partial localization of SLC30A8 on the plasma membrane. Then, we used the combination of this cell model, commercial FluoZin-3 cell permeant zinc dye and live cell imaging approach to follow zinc flux across SLC30A8 over-expressed on plasma membrane, thus developing a novel functional imaging- based assay specific for SLC30A8. Our novel approach can be further explored and optimized, paving the way for future small molecule medium-throughput screening.
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- 2024
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- View/download PDF
4. Label-free high-throughput screening assay for the identification of norepinephrine transporter (NET/SLC6A2) inhibitors
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Hubert J. Sijben, Wieke M. van Oostveen, Peter B. R. Hartog, Laura Stucchi, Andrea Rossignoli, Giovanna Maresca, Lia Scarabottolo, Adriaan P. IJzerman, and Laura H. Heitman
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Medicine ,Science - Abstract
Abstract The human norepinephrine transporter (NET) is an established drug target for a wide range of psychiatric disorders. Conventional methods that are used to functionally characterize NET inhibitors are based on the use of radiolabeled or fluorescent substrates. These methods are highly informative, but pose limitations to either high-throughput screening (HTS) adaptation or physiologically accurate representation of the endogenous uptake events. Recently, we developed a label-free functional assay based on the activation of G protein-coupled receptors by a transported substrate, termed the TRACT assay. In this study, the TRACT assay technology was applied to NET expressed in a doxycycline-inducible HEK 293 JumpIn cell line. Three endogenous substrates of NET—norepinephrine (NE), dopamine (DA) and epinephrine (EP)—were compared in the characterization of the reference NET inhibitor nisoxetine. The resulting assay, using NE as a substrate, was validated in a manual HTS set-up with a Z′ = 0.55. The inhibitory potencies of several reported NET inhibitors from the TRACT assay showed positive correlation with those from an established fluorescent substrate uptake assay. These findings demonstrate the suitability of the TRACT assay for HTS characterization and screening of NET inhibitors and provide a basis for investigation of other solute carrier transporters with label-free biosensors.
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- 2021
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5. An Overview of Cell-Based Assay Platforms for the Solute Carrier Family of Transporters
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Vojtech Dvorak, Tabea Wiedmer, Alvaro Ingles-Prieto, Patrick Altermatt, Helena Batoulis, Felix Bärenz, Eckhard Bender, Daniela Digles, Franz Dürrenberger, Laura H. Heitman, Adriaan P. IJzerman, Douglas B. Kell, Stefanie Kickinger, Daniel Körzö, Philipp Leippe, Thomas Licher, Vania Manolova, Riccardo Rizzetto, Francesca Sassone, Lia Scarabottolo, Avner Schlessinger, Vanessa Schneider, Hubert J. Sijben, Anna-Lena Steck, Hanna Sundström, Sara Tremolada, Maria Wilhelm, Marina Wright Muelas, Diana Zindel, Claire M. Steppan, and Giulio Superti-Furga
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solute carrier ,cell-based assay ,drug discovery ,chemical screening ,transporters ,SLC ,Therapeutics. Pharmacology ,RM1-950 - Abstract
The solute carrier (SLC) superfamily represents the biggest family of transporters with important roles in health and disease. Despite being attractive and druggable targets, the majority of SLCs remains understudied. One major hurdle in research on SLCs is the lack of tools, such as cell-based assays to investigate their biological role and for drug discovery. Another challenge is the disperse and anecdotal information on assay strategies that are suitable for SLCs. This review provides a comprehensive overview of state-of-the-art cellular assay technologies for SLC research and discusses relevant SLC characteristics enabling the choice of an optimal assay technology. The Innovative Medicines Initiative consortium RESOLUTE intends to accelerate research on SLCs by providing the scientific community with high-quality reagents, assay technologies and data sets, and to ultimately unlock SLCs for drug discovery.
- Published
- 2021
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6. Parallel All-Optical Assay to Study Use-Dependent Functioning of Voltage-Gated Ion Channels in a Miniaturized Format
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Loredana Redaelli, Viviana Agus, Paola Picardi, Sara Pizzi, Lucia Rutigliano, Jean-Francois Rolland, Silvia Cainarca, Tod A. Flak, and Lia Scarabottolo
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0301 basic medicine ,Rhodopsin ,Use dependent ,Materials science ,Calcium Channels, L-Type ,Gene Expression ,Nerve Tissue Proteins ,030204 cardiovascular system & hematology ,Optogenetics ,Biochemistry ,Cell Line ,NAV1.5 Voltage-Gated Sodium Channel ,Analytical Chemistry ,03 medical and health sciences ,All optical ,Potassium Channels, Tandem Pore Domain ,0302 clinical medicine ,Potassium Channel Blockers ,Humans ,Myocytes, Cardiac ,Potassium Channels, Inwardly Rectifying ,Ion channel ,Fluorescent Dyes ,Voltage-gated ion channel ,Algal Proteins ,Optical Imaging ,Intracellular Signaling Peptides and Proteins ,Calcium Channel Blockers ,Transmembrane protein ,HEK293 Cells ,030104 developmental biology ,Biophysics ,Molecular Medicine ,Biological Assay ,Calcium Channels ,Ion Channel Gating ,Chlamydomonas reinhardtii ,Biotechnology - Abstract
Voltage-gated ion channels produce rapid transmembrane currents responsible for action potential generation and propagation at the neuronal, muscular, and cardiac levels. They represent attractive clinical targets because their altered firing frequency is often the hallmark of pathological signaling leading to several neuromuscular disorders. Therefore, a method to study their functioning upon repeated triggers at different frequencies is desired to develop new drug molecules selectively targeting pathological phenotype. Optogenetics provides powerful tools for millisecond switch of cellular excitability in contactless, physiological, and low-cost settings. Nevertheless, its application to large-scale drug-screening operations is still limited by long processing time (due to sequential well read), rigid flashing pattern, lack of online compound addition, or high consumable costs of existing methods. Here, we developed a method that enables simultaneous analysis of 384-well plates with optical pacing, fluorescence recording, and liquid injection. We used our method to deliver programmable millisecond-switched depolarization through light-activated opsin in concomitance with continuous optical recording by a fluorescent indicator. We obtained 384-well pacing of recombinant voltage-activated sodium or calcium channels, as well as induced pluripotent stem cell (iPSC)-derived cardiomyocytes, in all-optical parallel settings. Furthermore, we demonstrated the use-dependent behavior of known ion channel blockers by optogenetic pacing at normal or pathological firing frequencies, obtaining very good signal reproducibility and accordance with electrophysiology data. Our method provides a novel physiological approach to study frequency-dependent drug behavior using reversible programmable triggers. The all-optical parallel settings combined with contained operational costs make our method particularly suited for large-scale drug-screening campaigns as well as cardiac liability studies.
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- 2021
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7. Label-Free High-Throughput Screening Assay for the Identification of Norepinephrine Transporter (NET / SLC6A2) Inhibitors
- Author
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Hubert Sijben, Wieke van Oostveen, Peter Hartog, Laura Stucchi, Giovanna Maresca, Lia Scarabottolo, Adriaan IJzerman, and Laura Heitman
- Abstract
The human norepinephrine transporter (NET) is an established drug target for a wide range of neurological disorders. Conventional methods that are used to functionally characterize NET inhibitors are based on the use of radiolabeled or fluorescent substrates. These methods are highly informative, but pose limitations to either high-throughput screening (HTS) adaptation or physiologically accurate representation of the endogenous uptake events. Recently, we developed a label-free functional assay based on the activation of G protein-coupled receptors by a transported substrate, termed the TRACT assay. In this study, the TRACT assay technology was applied to NET inducibly expressed in a modified HEK293-JumpIn cell line. Three endogenous substrates of NET – norepinephrine (NE), dopamine (DA) and epinephrine (EP) – were each assessed in characterization of the reference NET inhibitor nisoxetine. The resulting assay, using NE as a substrate, was validated in a manual HTS set-up with a Z’ = 0.55. The inhibitory potencies of several reported NET inhibitors from the TRACT assay showed positive correlation with those from an established fluorescent substrate uptake assay. These findings demonstrate the suitability of the TRACT assay for HTS characterization and screening of NET inhibitors and provide a basis for investigation of other solute carrier transporters with label-free biosensors.
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- 2021
- Full Text
- View/download PDF
8. Data Management Plan 2
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Ulrich Goldmann, Gerhard Ecker, Vitaly Sedlyarov, Lia Scarabottolo, Vania Manolova, Claire Colas
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- 2020
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9. Satiety Innovations: Food Products to Assist Consumers with Weight Loss, Evidence on the Role of Satiety in Healthy Eating: Overview and In Vitro Approximation
- Author
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Angel M Sanmartín, Alexandra M. Johnstone, Carmen Frontela-Saseta, Jason C.G. Halford, Joanne A. Harrold, Massimo Marzorati, Rubén López-Nicolás, Lia Scarabottolo, and Gaspar Ros-Berruezo
- Subjects
0301 basic medicine ,media_common.quotation_subject ,Calorie restriction ,030209 endocrinology & metabolism ,Healthy eating ,Food technology ,Satiation ,Overweight ,Eating ,03 medical and health sciences ,0302 clinical medicine ,Weight loss ,Weight Loss ,medicine ,Animals ,Humans ,media_common ,030109 nutrition & dietetics ,business.industry ,Product testing ,Appetite ,General Medicine ,medicine.disease ,Obesity ,Biotechnology ,Food ,Diet, Healthy ,Safety ,medicine.symptom ,business ,Psychology - Abstract
The prevalence of overweight and obesity is increasing globally, driven by the availability of energy-dense palatable foods. Most dietary strategies fail because of hunger generated by calorie restriction, and interventions that specifically control hunger and/or promote fullness may aid success. Current consumers have a limited choice of satiety-enhancing products with proven health benefits, and innovative ways to produce new foods (as structural modification) to enhance satiety/satiation may provide new opportunities. However, this potential is hindered by the cost of product testing. Within the SATIN-SATiety INnovation project-an in vitro platform has been developed to offer a cost-effective means of assessing the potential satiation/satiety effect of novel foods. This combines in vitro technologies to assess changes in colonic bacteria metabolism, appetite hormone release and the stability and bioavailability of active compounds in the new products/ingredients. This article provides a brief review of nutrients for which an impact on short-term appetite regulation has been demonstrated, and a summary of the changes to food structure which can be used to produce a change in appetite expression. Furthermore, the SATIN in vitro platform is discussed as a means of assessing the impact of nutritional and structural manipulations on appetite.
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- 2016
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10. Three-Dimensional Control of Ion Channel Function through Optogenetics and Co-Culture
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Paola Picardi, Stefan Lohmer, Viviana Agus, Lia Scarabottolo, and Loredana Redaelli
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0301 basic medicine ,Calcium Channels, L-Type ,Computer science ,High-throughput screening ,Optogenetics ,Ligands ,Biochemistry ,Ion Channels ,Analytical Chemistry ,Cell Line ,03 medical and health sciences ,0302 clinical medicine ,Drug Discovery ,Humans ,Ion channel ,Drug discovery ,Cellular Assay ,Coculture Techniques ,High-Throughput Screening Assays ,Kinetics ,030104 developmental biology ,Ion channel activity ,Cellular excitability ,Molecular Medicine ,Biological system ,030217 neurology & neurosurgery ,Biotechnology - Abstract
The lack of miniaturized and cost-effective methods to control cellular excitability with dosable and temporally precise electrical perturbations represents a long-lasting and unsolved bottleneck for ion channel drug discovery pipelines. Here we developed a high-throughput-compatible fluorescent-based cellular assay that combines optogenetics and co-culture approaches to obtain spatial, temporal, and quantitative control of ion channel activity. The modularity and increased flexibility of control of this light-tandem assay, combined with contained costs and compatibility with conventional drug-screening platforms, make this system suitable for temporally precise screening of ion channel function in controlled conformations and can also be used to recapitulate other complexly regulated biological processes.
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- 2017
11. Identifying Ryanodine Receptor Modulators: from High-Throughput Screening to Single Channel Recording
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Lia Scarabottolo, Katharina Montag, Jean-Francois Rolland, Maria Grazia Garibaldi, Lucy Firth, Judith Blythe, Manuel Paina, Loredana Redaelli, and Jim Goodchild
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Physics ,Ryanodine receptor ,High-throughput screening ,Biophysics ,Channel (broadcasting) - Published
- 2020
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12. Bringing the light to high throughput screening: use of optogenetic tools for the development of recombinant cellular assays
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Katharina Montag, Anna Mondini, Viviana Agus, Alberto di Silvio, Jean Francois Rolland, Lia Scarabottolo, Stefan Lohmer, Sara Tremolada, and Loredana Redaelli
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Drug discovery ,Computer science ,Calcium channel ,High-throughput screening ,Channelrhodopsin ,Nanotechnology ,Optogenetics ,Fluorescence ,Adenylyl cyclase ,chemistry.chemical_compound ,chemistry ,Temporal resolution ,Molecule ,Luminescence ,Biological system ,Ion channel ,Plate reader ,Chloride channel activity - Abstract
The use of light-activated proteins represents a powerful tool to control biological processes with high spatial and temporal precision. These so called “optogenetic” technologies have been successfully validated in many recombinant systems, and have been widely applied to the study of cellular mechanisms in intact tissues or behaving animals; to do that, complex, high-intensity, often home-made instrumentations were developed to achieve the optimal power and precision of light stimulation. In our study we sought to determine if this optical modulation can be obtained also in a miniaturized format, such as a 384-well plate, using the instrumentations normally dedicated to fluorescence analysis in High Throughput Screening (HTS) activities, such as for example the FLIPR (Fluorometric Imaging Plate Reader) instrument. We successfully generated optogenetic assays for the study of different ion channel targets: the CaV1.3 calcium channel was modulated by the light-activated Channelrhodopsin-2, the HCN2 cyclic nucleotide gated (CNG) channel was modulated by the light activated bPAC adenylyl cyclase, and finally the genetically encoded voltage indicator ArcLight was efficiently used to measure potassium, sodium or chloride channel activity. Our results showed that stable, robust and miniaturized cellular assays can be developed using different optogenetic tools, and efficiently modulated by the FLIPR instrument LEDs in a 384-well format. The spatial and temporal resolution delivered by this technology might enormously advantage the early stages of drug discovery, leading to the identification of more physiological and effective drug molecules.
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- 2015
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13. An Innovative Cell-Based Assay for the Detection of Modulators of Soluble Guanylate Cyclase
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Stefan Lohmer, Chiara Liberati, Sabrina Corazza, and Lia Scarabottolo
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GUCY1B3 ,Drug Evaluation, Preclinical ,Enzyme Activators ,Guanosine ,CHO Cells ,Biology ,Nitric Oxide ,Structure-Activity Relationship ,Enzyme activator ,chemistry.chemical_compound ,Cricetulus ,Cricetinae ,Drug Discovery ,Animals ,Enzyme Inhibitors ,Cyclic GMP ,GUCY1A2 ,Activator (genetics) ,Chinese hamster ovary cell ,GUCY1A3 ,Guanylate cyclase 2C ,Rats ,Biochemistry ,chemistry ,Guanylate Cyclase ,Luminescent Measurements ,Molecular Medicine ,Biological Assay ,Protein Binding ,Signal Transduction - Abstract
Guanylate cyclase (GC) catalyzes the biosynthesis of cyclic guanosine 3',5'- monophosphate (cGMP) from GTP. GC exists in two isoenzyme forms: soluble and membrane-bound. The soluble GC (sGC) is a heterodimer composed of an alpha and a beta subunit, and it contains heme as a prosthetic group. The most important physiological activator of sGC is nitric oxide, which activates the enzyme upon binding to the heme moiety. By producing the second messenger cGMP, which regulates various effector systems such as phosphodiesterases, ion channels, and protein kinases, sGC plays an important role in different physiological processes, thus representing a very attractive pharmacological target. In fact, the pathogenesis of several diseases, especially those of the cardiovascular system, has been linked to inappropriate regulation of sGC. In order to find new modulators for this important enzyme, an innovative cell-based assay has been developed and optimized for the use in high-throughput screening. This luminescent assay, which is suitable for both 96- and 384-well plate formats, has been achieved by stably expressing the alpha and beta subunits of a mutated form of sGC in Chinese hamster ovary cells. The mutated form synthesizes cyclic adenosine 3',5'-monophosphate instead of cGMP, allowing the detection of enzymatic activity by a reporter gene approach. We demonstrated that this cell line responds to compounds typically used in the field of sGC research and that it represents an innovative and robust assay to screen for sGC modulators with high efficiency and high sensitivity by means of standard luminescence readers.
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- 2006
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14. NeuroSafe: A human integrated in vitro Neurotoxicity Safety Platform
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Elke Guenther, Lia Scarabottolo, Matteo Brioschi, Sara Tremolada, Loredana Redaelli, Christina Kuhn, Giovanna Maresca, and Dietmar Hess
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Pharmacology ,business.industry ,Neurotoxicity ,Medicine ,Toxicology ,business ,medicine.disease ,In vitro - Published
- 2016
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15. Optogenetic Technologies Enable High Throughput Ion Channel Drug Discovery and Toxicity Screening
- Author
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Lia Scarabottolo, Leo Doerr, Tobias Bruegmann, Krisztina Juhasz, Philipp Sasse, Viviana Agus, Sara Pizzi, Andrea Brüggemann, Susanne Renhelt, Michael George, Daniela Malan, Jean-Francois Rolland, Riccardo Rizzetto, Matthias Beckler, and Niels Fertig
- Subjects
0301 basic medicine ,03 medical and health sciences ,030104 developmental biology ,Computer science ,Drug discovery ,Toxicity ,Biophysics ,Computational biology ,Optogenetics ,Throughput (business) ,Ion channel - Published
- 2018
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16. Transported by Light: Optogenetic Control of NCX1
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Jean-Francois Rolland, Lia Scarabottolo, Lucia Rutigliano, Loredana Redaelli, Viviana Agus, Silvia Cainarca, and Riccardo Rizzetto
- Subjects
Biophysics ,Optogenetics ,Biology ,Neuroscience - Published
- 2018
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17. An Innovative Cell-Based Assay for the Detection of Modulators of Soluble Guanylate Cyclase.
- Author
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Sabrina Corazza, Lia Scarabottolo, Stefan Lohmer, and Chiara Liberati
- Published
- 2006
18. Experimental hypothyroidism modulates the expression of the low density lipoprotein receptor by the liver
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P. Roma, Ermanno Trezzi, Lia Scarabottolo, and Alberico L. Catapano
- Subjects
Apolipoprotein E ,Male ,medicine.medical_specialty ,Very low-density lipoprotein ,Low-density lipoprotein receptor-related protein 8 ,endocrine system diseases ,Lipoproteins ,Lipoproteins, VLDL ,chemistry.chemical_compound ,Hypothyroidism ,Internal medicine ,medicine ,Animals ,Receptor ,Catabolism ,Rats, Inbred Strains ,Rats ,Lipoproteins, LDL ,Kinetics ,Endocrinology ,Cholesterol ,chemistry ,Liver ,Receptors, LDL ,Low-density lipoprotein ,LDL receptor ,Thyroidectomy ,lipids (amino acids, peptides, and proteins) ,Cardiology and Cardiovascular Medicine ,Lipoprotein - Abstract
The effect of experimental hypothyroidism on the catabolism of plasma lipoproteins and on the expression of low density lipoprotein receptors by the liver was investigated in rats made hypothyroid by surgery. The animals developed mild hypercholesterolemia, mainly due to an increase of plasma low density lipoprotein, while other lipoprotein classes were only marginally affected. Kinetic studies using [ 125 I]LDL indicated that a decreased fractional catabolic rate of the lipoprotein was responsible for this finding in agreement with the in vitro observation of a reduced binding of lipoproteins to liver membranes from hypothyroid rats and with the demonstration, by ligand blotting analysis, of a decreased expression of lipoprotein receptors in liver membranes. These data suggest that hypothyroidism affects lipoprotein distribution also by decreasing the catabolism of low density lipoproteins by the liver.
- Published
- 1986
19. Assays for (electrogenic) transporters
- Author
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Lia Scarabottolo, Juergen Reinhardt, and Huub Sijben
- Subjects
Transport assay ,3. Good health - Abstract
A report summarizing results and protocols obtained using fluorescent sensitive dyes and impedance measurements.
20. Assays for SLCs based on fluorescent sensor proteins
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Philipp Leippe and Lia Scarabottolo
- Subjects
Transport assay ,3. Good health - Abstract
A report summarizing results and protocols on measuring SLC-dependent metabolic states through fluorescent sensor proteins.
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