11 results on '"Leitao, Jordana"'
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2. Estimating causes of death where there is no medical certification: evolution and state of the art of verbal autopsy
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Chandramohan, Daniel, primary, Fottrell, Edward, additional, Leitao, Jordana, additional, Nichols, Erin, additional, Clark, Samuel J., additional, Alsokhn, Carine, additional, Cobos Munoz, Daniel, additional, AbouZahr, Carla, additional, Di Pasquale, Aurelio, additional, Mswia, Robert, additional, Choi, Eungang, additional, Baiden, Frank, additional, Thomas, Jason, additional, Lyatuu, Isaac, additional, Li, Zehang, additional, Larbi-Debrah, Patrick, additional, Chu, Yue, additional, Cheburet, Samuel, additional, Sankoh, Osman, additional, Mohamed Badr, Azza, additional, Fat, Doris Ma, additional, Setel, Philip, additional, Jakob, Robert, additional, and de Savigny, Don, additional
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- 2021
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3. The WHO 2016 verbal autopsy instrument: An international standard suitable for automated analysis by InterVA, InSilicoVA, and Tariff 2.0
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Nichols, Erin K., Byass, Peter, Chandramohan, Daniel, Clark, Samuel J., Flaxman, Abraham D., Jakob, Robert, Leitao, Jordana, Maire, Nicolas, Rao, Chalapati, Riley, Ian, and Setel, Philip W.
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Medical research ,Medical technology -- Innovations ,Autopsy -- Technology application ,Technology application ,Biological sciences - Abstract
Background Verbal autopsy (VA) is a practical method for determining probable causes of death at the population level in places where systems for medical certification of cause of death are weak. VA methods suitable for use in routine settings, such as civil registration and vital statistics (CRVS) systems, have developed rapidly in the last decade. These developments have been part of a growing global momentum to strengthen CRVS systems in low-income countries. With this momentum have come pressure for continued research and development of VA methods and the need for a single standard VA instrument on which multiple automated diagnostic methods can be developed. Methods and findings In 2016, partners harmonized a WHO VA standard instrument that fully incorporates the indicators necessary to run currently available automated diagnostic algorithms. The WHO 2016 VA instrument, together with validated approaches to analyzing VA data, offers countries solutions to improving information about patterns of cause-specific mortality. This VA instrument offers the opportunity to harmonize the automated diagnostic algorithms in the future. Conclusions Despite all improvements in design and technology, VA is only recommended where medical certification of cause of death is not possible. The method can nevertheless provide sufficient information to guide public health priorities in communities in which physician certification of deaths is largely unavailable. The WHO 2016 VA instrument, together with validated approaches to analyzing VA data, offers countries solutions to improving information about patterns of cause-specific mortality., Author(s): Erin K. Nichols 1,*, Peter Byass 2,3, Daniel Chandramohan 4, Samuel J. Clark 3,5,6,7, Abraham D. Flaxman 8, Robert Jakob 9, Jordana Leitao 9, Nicolas Maire 10,11, Chalapati Rao [...]
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- 2018
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4. Performance of four computer-coded verbal autopsy methods for cause of death assignment compared with physician coding on 24,000 deaths in low- and middle-income countries
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Desai, Nikita, Aleksandrowicz, Lukasz, Miasnikof, Pierre, Lu, Ying, Leitao, Jordana, Byass, Peter, Tollman, Stephen, Mee, Paul, Alam, Dewan, Rathi, Suresh Kumar, Singh, Abhishek, Kumar, Rajesh, Ram, Faujdar, Jha, Prabhat, Desai, Nikita, Aleksandrowicz, Lukasz, Miasnikof, Pierre, Lu, Ying, Leitao, Jordana, Byass, Peter, Tollman, Stephen, Mee, Paul, Alam, Dewan, Rathi, Suresh Kumar, Singh, Abhishek, Kumar, Rajesh, Ram, Faujdar, and Jha, Prabhat
- Abstract
BACKGROUND: Physician-coded verbal autopsy (PCVA) is the most widely used method to determine causes of death (CODs) in countries where medical certification of death is uncommon. Computer-coded verbal autopsy (CCVA) methods have been proposed as a faster and cheaper alternative to PCVA, though they have not been widely compared to PCVA or to each other. METHODS: We compared the performance of open-source random forest, open-source tariff method, InterVA-4, and the King-Lu method to PCVA on five datasets comprising over 24,000 verbal autopsies from low- and middle-income countries. Metrics to assess performance were positive predictive value and partial chance-corrected concordance at the individual level, and cause-specific mortality fraction accuracy and cause-specific mortality fraction error at the population level. RESULTS: The positive predictive value for the most probable COD predicted by the four CCVA methods averaged about 43% to 44% across the datasets. The average positive predictive value improved for the top three most probable CODs, with greater improvements for open-source random forest (69%) and open-source tariff method (68%) than for InterVA-4 (62%). The average partial chance-corrected concordance for the most probable COD predicted by the open-source random forest, open-source tariff method and InterVA-4 were 41%, 40% and 41%, respectively, with better results for the top three most probable CODs. Performance generally improved with larger datasets. At the population level, the King-Lu method had the highest average cause-specific mortality fraction accuracy across all five datasets (91%), followed by InterVA-4 (72% across three datasets), open-source random forest (71%) and open-source tariff method (54%). CONCLUSIONS: On an individual level, no single method was able to replicate the physician assignment of COD more than about half the time. At the population level, the King-Lu method was the best method to estimate cause-specific mortality fr
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- 2014
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5. Comparison of physician-certified verbal autopsy with computer-coded verbal autopsy for cause of death assignment in hospitalized patients in low- and middle-income countries : systematic review
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Leitao, Jordana, Desai, Nikita, Aleksandrowicz, Lukasz, Byass, Peter, Miasnikof, Pierre, Tollman, Stephen, Alam, Dewan, Lu, Ying, Rathi, Suresh Kumar, Singh, Abhishek, Suraweera, Wilson, Ram, Faujdar, Jha, Prabhat, Leitao, Jordana, Desai, Nikita, Aleksandrowicz, Lukasz, Byass, Peter, Miasnikof, Pierre, Tollman, Stephen, Alam, Dewan, Lu, Ying, Rathi, Suresh Kumar, Singh, Abhishek, Suraweera, Wilson, Ram, Faujdar, and Jha, Prabhat
- Abstract
BACKGROUND: Computer-coded verbal autopsy (CCVA) methods to assign causes of death (CODs) for medically unattended deaths have been proposed as an alternative to physician-certified verbal autopsy (PCVA). We conducted a systematic review of 19 published comparison studies (from 684 evaluated), most of which used hospital-based deaths as the reference standard. We assessed the performance of PCVA and five CCVA methods: Random Forest, Tariff, InterVA, King-Lu, and Simplified Symptom Pattern. METHODS: The reviewed studies assessed methods' performance through various metrics: sensitivity, specificity, and chance-corrected concordance for coding individual deaths, and cause-specific mortality fraction (CSMF) error and CSMF accuracy at the population level. These results were summarized into means, medians, and ranges. RESULTS: The 19 studies ranged from 200 to 50,000 deaths per study (total over 116,000 deaths). Sensitivity of PCVA versus hospital-assigned COD varied widely by cause, but showed consistently high specificity. PCVA and CCVA methods had an overall chance-corrected concordance of about 50% or lower, across all ages and CODs. At the population level, the relative CSMF error between PCVA and hospital-based deaths indicated good performance for most CODs. Random Forest had the best CSMF accuracy performance, followed closely by PCVA and the other CCVA methods, but with lower values for InterVA-3. CONCLUSIONS: There is no single best-performing coding method for verbal autopsies across various studies and metrics. There is little current justification for CCVA to replace PCVA, particularly as physician diagnosis remains the worldwide standard for clinical diagnosis on live patients. Further assessments and large accessible datasets on which to train and test combinations of methods are required, particularly for rural deaths without medical attention.
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- 2014
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6. Comparison of physician-certified verbal autopsy with computer-coded verbal autopsy for cause of death assignment in hospitalized patients in low- and middle-income countries: systematic review
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Leitao, Jordana, primary, Desai, Nikita, additional, Aleksandrowicz, Lukasz, additional, Byass, Peter, additional, Miasnikof, Pierre, additional, Tollman, Stephen, additional, Alam, Dewan, additional, Lu, Ying, additional, Rathi, Suresh Kumar, additional, Singh, Abhishek, additional, Suraweera, Wilson, additional, Ram, Faujdar, additional, and Jha, Prabhat, additional
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- 2014
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7. Performance of four computer-coded verbal autopsy methods for cause of death assignment compared with physician coding on 24,000 deaths in low- and middle-income countries
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Desai, Nikita, primary, Aleksandrowicz, Lukasz, additional, Miasnikof, Pierre, additional, Lu, Ying, additional, Leitao, Jordana, additional, Byass, Peter, additional, Tollman, Stephen, additional, Mee, Paul, additional, Alam, Dewan, additional, Rathi, Suresh Kumar, additional, Singh, Abhishek, additional, Kumar, Rajesh, additional, Ram, Faujdar, additional, and Jha, Prabhat, additional
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- 2014
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8. Revising the WHO verbal autopsy instrument to facilitate routine cause-of-death monitoring
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Leitao, Jordana, Chandramohan, Daniel, Byass, Peter, Jakob, Robert, Bundhamcharoen, Kanitta, Choprapawon, Chanpen, de Savigny, Don, Fottrell, Edward, França, Elizabeth, Frøen, Frederik, Gewaifel, Gihan, Hodgson, Abraham, Hounton, Sennen, Kahn, Kathleen, Krishnan, Anand, Kumar, Vishwajeet, Masanja, Honorati, Nichols, Erin, Notzon, Francis, Rasooly, Mohammad Hafiz, Sankoh, Osman, Spiegel, Paul, AbouZahr, Carla, Amexo, Marc, Kebede, Derege, Alley, William Soumbey, Marinho, Fatima, Ali, Mohamed, Loyola, Enrique, Chikersal, Jyotsna, Gao, Jun, Annunziata, Giuseppe, Bahl, Rajiv, Bartolomeus, Kidist, Boerma, Ties, Ustun, Bedirhan, Chou, Doris, Muhe, Lulu, Mathai, Matthews, Leitao, Jordana, Chandramohan, Daniel, Byass, Peter, Jakob, Robert, Bundhamcharoen, Kanitta, Choprapawon, Chanpen, de Savigny, Don, Fottrell, Edward, França, Elizabeth, Frøen, Frederik, Gewaifel, Gihan, Hodgson, Abraham, Hounton, Sennen, Kahn, Kathleen, Krishnan, Anand, Kumar, Vishwajeet, Masanja, Honorati, Nichols, Erin, Notzon, Francis, Rasooly, Mohammad Hafiz, Sankoh, Osman, Spiegel, Paul, AbouZahr, Carla, Amexo, Marc, Kebede, Derege, Alley, William Soumbey, Marinho, Fatima, Ali, Mohamed, Loyola, Enrique, Chikersal, Jyotsna, Gao, Jun, Annunziata, Giuseppe, Bahl, Rajiv, Bartolomeus, Kidist, Boerma, Ties, Ustun, Bedirhan, Chou, Doris, Muhe, Lulu, and Mathai, Matthews
- Abstract
OBJECTIVE: Verbal autopsy (VA) is a systematic approach for determining causes of death (CoD) in populations without routine medical certification. It has mainly been used in research contexts and involved relatively lengthy interviews. Our objective here is to describe the process used to shorten, simplify, and standardise the VA process to make it feasible for application on a larger scale such as in routine civil registration and vital statistics (CRVS) systems. METHODS: A literature review of existing VA instruments was undertaken. The World Health Organization (WHO) then facilitated an international consultation process to review experiences with existing VA instruments, including those from WHO, the Demographic Evaluation of Populations and their Health in Developing Countries (INDEPTH) Network, InterVA, and the Population Health Metrics Research Consortium (PHMRC). In an expert meeting, consideration was given to formulating a workable VA CoD list [with mapping to the International Classification of Diseases and Related Health Problems, Tenth Revision (ICD-10) CoD] and to the viability and utility of existing VA interview questions, with a view to undertaking systematic simplification. FINDINGS: A revised VA CoD list was compiled enabling mapping of all ICD-10 CoD onto 62 VA cause categories, chosen on the grounds of public health significance as well as potential for ascertainment from VA. A set of 221 indicators for inclusion in the revised VA instrument was developed on the basis of accumulated experience, with appropriate skip patterns for various population sub-groups. The duration of a VA interview was reduced by about 40% with this new approach. CONCLUSIONS: The revised VA instrument resulting from this consultation process is presented here as a means of making it available for widespread use and evaluation. It is envisaged that this will be used in conjunction with automated models for assigning CoD from VA data, rather than involving physicians.
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- 2013
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9. Strengthening standardised interpretation of verbal autopsy data : the new InterVA-4 tool
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Byass, Peter, Chandramohan, Daniel, Clark, Samuel J., D'Ambruoso, Lucia, Fottrell, Edward, Graham, Wendy J., Herbst, Abraham J., Hodgson, Abraham, Hounton, Sennen, Kahn, Kathleen, Krishnan, Anand, Leitao, Jordana, Odhiambo, Frank, Sankoh, Osman A., Tollman, Stephen M., Byass, Peter, Chandramohan, Daniel, Clark, Samuel J., D'Ambruoso, Lucia, Fottrell, Edward, Graham, Wendy J., Herbst, Abraham J., Hodgson, Abraham, Hounton, Sennen, Kahn, Kathleen, Krishnan, Anand, Leitao, Jordana, Odhiambo, Frank, Sankoh, Osman A., and Tollman, Stephen M.
- Abstract
Background: Verbal autopsy (VA) is the only available approach for determining the cause of many deaths, where routine certification is not in place. Therefore, it is important to use standards and methods for VA that maximise efficiency, consistency and comparability. The World Health Organization (WHO) has led the development of the 2012 WHO VA instrument as a new standard, intended both as a research tool and for routine registration of deaths. Objective: A new public-domain probabilistic model for interpreting VA data, InterVA-4, is described, which builds on previous versions and is aligned with the 2012 WHO VA instrument. Design: The new model has been designed to use the VA input indicators defined in the 2012 WHO VA instrument and to deliver causes of death compatible with the International Classification of Diseases version 10 (ICD-10) categorised into 62 groups as defined in the 2012 WHO VA instrument. In addition, known shortcomings of previous InterVA models have been addressed in this revision, as well as integrating other work on maternal and perinatal deaths. Results: The InterVA-4 model is presented here to facilitate its widespread use and to enable further field evaluation to take place. Results from a demonstration dataset from Agincourt, South Africa, show continuity of interpretation between InterVA-3 and InterVA-4, as well as differences reflecting specific issues addressed in the design and development of InterVA-4. Conclusions: InterVA-4 is made freely available as a new standard model for interpreting VA data into causes of death. It can be used for determining cause of death both in research settings and for routine registration. Further validation opportunities will be explored. These developments in cause of death registration are likely to substantially increase the global coverage of cause-specific mortality data.
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- 2012
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10. Revising the WHO verbal autopsy instrument to facilitate routine cause-of-death monitoring
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Leitao, Jordana, primary, Chandramohan, Daniel, additional, Byass, Peter, additional, Jakob, Robert, additional, Bundhamcharoen, Kanitta, additional, Choprapawon, Chanpen, additional, de Savigny, Don, additional, Fottrell, Edward, additional, França, Elizabeth, additional, Frøen, Frederik, additional, Gewaifel, Gihan, additional, Hodgson, Abraham, additional, Hounton, Sennen, additional, Kahn, Kathleen, additional, Krishnan, Anand, additional, Kumar, Vishwajeet, additional, Masanja, Honorati, additional, Nichols, Erin, additional, Notzon, Francis, additional, Rasooly, Mohammad Hafiz, additional, Sankoh, Osman, additional, Spiegel, Paul, additional, AbouZahr, Carla, additional, Amexo, Marc, additional, Kebede, Derege, additional, Soumbey Alley, William, additional, Marinho, Fatima, additional, Ali, Mohamed, additional, Loyola, Enrique, additional, Chikersal, Jyotsna, additional, Gao, Jun, additional, Annunziata, Giuseppe, additional, Bahl, Rajiv, additional, Bartolomeus, Kidist, additional, Boerma, Ties, additional, Ustun, Bedirhan, additional, Chou, Doris, additional, Muhe, Lulu, additional, and Mathai, Matthews, additional
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- 2013
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11. Strengthening standardised interpretation of verbal autopsy data: the new InterVA-4 tool
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Byass, Peter, primary, Chandramohan, Daniel, additional, Clark, Samuel J., additional, D'Ambruoso, Lucia, additional, Fottrell, Edward, additional, Graham, Wendy J., additional, Herbst, Abraham J., additional, Hodgson, Abraham, additional, Hounton, Sennen, additional, Kahn, Kathleen, additional, Krishnan, Anand, additional, Leitao, Jordana, additional, Odhiambo, Frank, additional, Sankoh, Osman A., additional, and Tollman, Stephen M., additional
- Published
- 2012
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