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We herein present a multifunctional self-priming hairpin probe-based isothermal amplification, termed MSH, enabling one-pot detection of target nucleic acids. The sophisticatedly designed multifunctional self-priming hairpin (MSH) probe recognizes the target and rearranges to prime itself, triggering the amplification reaction powered by the continuously repeated extension, nicking, and target recycling. As a consequence, a large number of double-stranded DNA (dsDNA) amplicons are produced that could be monitored in real-time using a dsDNA-intercalating dye. Based on this unique design approach, the nucleocapsid (N) and the open reading frame 1 ab (ORF1ab) genes of SARS-CoV-2 were successfully detected down to 1.664 fM and 0.770 fM, respectively. The practical applicability of our method was validated by accurately diagnosing 60 clinical samples with 93.33% sensitivity and 96.67% specificity. This isothermal one-pot MSH technique holds great promise as a point-of-care testing protocol for the reliable detection of a wide spectrum of pathogens, particularly in resource-limited settings.

This review analyzes the data on co-variations in δ13C and δ15N of soils with land-use types, management, and disturbance obtained from literature to explore potential implications of the dual isotopes in the study of soil organic matter (SOM) sources and C and N processes. Overall, croplands (δ13C and δ15N were − 20.3 ± 4.4‰ and + 7.6 ± 4.4‰, respectively) had greater isotopic values than grasslands (‒26.3 ± 3.0‰ and + 5.4 ± 1.1‰, respectively) and forests (− 26.0 ± 1.1‰ and + 4.3 ± 2.2‰, respectively). For intensively managed lands such as croplands and grasslands, application of organic inputs such as manure and compost of which isotopic signatures differed from the indigenous SOM was the main driver of co-variations in the δ13C and δ15N of SOM. For natural forests, both δ13C and δ15N of SOM co-increased with soil depth, reflecting heavy isotope enrichment during microbial stabilization of SOM and the potential influence of 13C-depleted atmospheric CO2 and 15N-depleted N deposition on the upper soils. Such vertical co-enrichments of 13C and 15N were disturbed by a land-use conversion to other lands including croplands. Though there were indications that land management practices such as tillage in croplands and grazing in grasslands, land-use changes, and land disturbance including forest fire might also affect both δ13C and δ15N, more data need to be accumulated to find a general trend of the isotopic variations of SOM. Analysis of both δ13C and δ15N may enlarge understanding of changes in SOM sources and soil C and N cycling by land-use types, management, change, and disturbance. [ABSTRACT FROM AUTHOR]

Rice residue including root and straw are unique carbon (C) source in paddy soils. However, the potential changes in quantity and chemical composition of rice residue under co-elevated atmospheric CO2 concentration ([CO2]) and air temperature (Tair) and the legacy effect of the changed chemical composition on residue decomposition have not been investigated. This study was conducted to investigate biomass, chemical composition, and decomposability of rice root and straw produced under elevated [CO2] and Tair. Root and straw biomass increased by elevated [CO2] and elevated Tair, respectively, and the greatest biomass was achieved under co-elevated [CO2]-Tair for both root and straw. The concentration of lignin (recalcitrant) decreased while that of nonstructural carbohydrates (less recalcitrant) increased by co-elevated [CO2]-Tair. The ratio of lignin-to-nitrogen (lignin/N) decreased by co-elevated [CO2]-Tair compared to ambient [CO2]-Tair due to increased N and decreased lignin concentrations. Decomposability of root (lignin/N, 36.4) produced under co-elevated [CO2]-Tair was greater than that under ambient co-elevated [CO2]-Tair (lignin/N, 53.7); however, there was no difference in decomposability for straw, which had relatively narrow range of lignin/N (27.3–36.5) regardless of [CO2]-Tair conditions. The results of this study provide a novel insight into the changes in quantity and quality of rice residue under elevated [CO2]-Tair that are necessary to predict changes in paddy soil C sequestration under global warming. [ABSTRACT FROM AUTHOR]

The properties of secondary salt-affected soils developed from improper irrigation and drainage management and their effects on rice growth and yield are well documented. However, relevant information on coastal reclaimed tideland (RTL) soils, which are classified as primary salt-affected soils developed through salt-accumulated sediments is lacking. In this paper, we reviewed the physical and chemical properties of RTL soils in comparison with non-RTL soils and analyzed the relationship between rice production and soil salinity in RTL to suggest agricultural management practices for sustainable rice production and soil carbon sequestration in RTL. Similar to the secondary salt-affected soils, RTL soils were characterized by high alkalinity, salinity, and sodicity, and rice yield was negatively correlated with salinity. However, it was also found that lower fertility (e.g., organic matter and phosphorus) of RTL soils than non-RTL soils might also hamper rice growth and thus carbon input via plant residues in RTL soils. Correlation between years after reclamation and soil properties of RTL showed that cultivation of rice with annual fertilization and organic matter inputs increased soil fertility but salinity and sodicity did not show a significant tendency of change, suggesting that natural desalinization in RTL soils is hard to be achieved with conventional rice cultivation. Therefore, it is suggested that fertilization management as well as salinity management via drainage, gypsum application, tillage, and proper irrigation may be necessary to improve rice production and carbon sequestration in RTL soils. [ABSTRACT FROM AUTHOR]