Search

Science communication aims at making key research insights accessible to the broad public. If explanatory and exploratory visualization techniques are combined to do so, the approach is also referred to as exploranation. In this context, the audience is usually not required to have domain expertise. However, we show that exploranation can not only support the communication between researchers and a broad audience, but also between researchers directly. With the goal of communicating an existing method for conducting causal inference on spatio-temporal conflict event data, we investigated how to perform exploranation for experts, i.e., expert exploranation. Based on application scenarios of the inference method, we developed three versions of an interactive visual story to explain the method to conflict researchers. We abstracted the corresponding design process and evaluated the stories both with experts who were unfamiliar with the explained method and experts who were already familiar with it. The positive and extensive feedback from the evaluation shows that expert exploranation is a promising direction for visual storytelling, as it can help to improve scientific outreach, methodological understanding, and accessibility for researchers new to a field., Comment: 40 pages, 4 figures, 2 tables

Exploratory analysis of scalar fields on surface meshes presents significant challenges in identifying and visualizing important regions, particularly on the surface's backside. Previous visualization methods achieved only a limited visibility of significant features, i.e., regions with high or low scalar values, during interactive exploration. In response to this, we propose a novel technique, InverseVis, which leverages curved sphere tracing and uses the otherwise unused space to enhance visibility. Our approach combines direct and indirect rendering, allowing camera rays to wrap around the surface and reveal information from the backside. To achieve this, we formulate an energy term that guides the image synthesis in previously unused space, highlighting the most important regions of the backside. By quantifying the amount of visible important features, we optimize the camera position to maximize the visibility of the scalar field on both the front and backsides. InverseVis is benchmarked against state-of-the-art methods and a derived technique, showcasing its effectiveness in revealing essential features and outperforming existing approaches., Comment: Eurographics Conference on Visualization (EuroVis)

The emergence of computational fluid dynamics (CFD) enabled the simulation of intricate transport processes, including flow in physiological structures, such as blood vessels. While these so-called hemodynamic simulations offer groundbreaking opportunities to solve problems at the clinical forefront, a successful translation of CFD to clinical decision-making is challenging. Hemodynamic simulations are intrinsically complex, time-consuming, and resource-intensive, which conflicts with the time-sensitive nature of clinical workflows and the fact that hospitals usually do not have the necessary resources or infrastructure to support CFD simulations. To address these transfer challenges, we propose a novel visualization system which enables instant flow exploration without performing on-site simulation. To gain insights into the viability of the approach, we focus on hemodynamic simulations of the carotid bifurcation, which is a highly relevant arterial subtree in stroke diagnostics and prevention. We created an initial database of 120 high-resolution carotid bifurcation flow models and developed a set of similarity metrics used to place a new carotid surface model into a neighborhood of simulated cases with the highest geometric similarity. The neighborhood can be immediately explored and the flow fields analyzed. We found that if the artery models are similar enough in the regions of interest, a new simulation leads to coinciding results, allowing the user to circumvent individual flow simulations. We conclude that similarity-based visual analysis is a promising approach toward the usability of CFD in medical practice., Comment: 13 pages, Eurographics Conference on Visualization (EuroVis) 2024

Line attributes such as width and dashing are commonly used to encode information. However, many questions on the perception of line attributes remain, such as how many levels of attribute variation can be distinguished or which line attributes are the preferred choices for which tasks. We conducted three studies to develop guidelines for using stylized lines to encode scalar data. In our first study, participants drew stylized lines to encode uncertainty information. Uncertainty is usually visualized alongside other data. Therefore, alternative visual channels are important for the visualization of uncertainty. Additionally, uncertainty -- e.g., in weather forecasts -- is a familiar topic to most people. Thus, we picked it for our visualization scenarios in study 1. We used the results of our study to determine the most common line attributes for drawing uncertainty: Dashing, luminance, wave amplitude, and width. While those line attributes were especially common for drawing uncertainty, they are also commonly used in other areas. In studies 2 and 3, we investigated the discriminability of the line attributes determined in study 1. Studies 2 and 3 did not require specific application areas; thus, their results apply to visualizing any scalar data in line attributes. We evaluated the just-noticeable differences (JND) and derived recommendations for perceptually distinct line levels. We found that participants could discriminate considerably more levels for the line attribute width than for wave amplitude, dashing, or luminance., Comment: 11 pages, 9 figures, to be published in IEEE Transactions on Visualization and Computer Graphics The supplemental material for this paper is available at https://www.doi.org/10.17605/OSF.IO/7SCF8

Illustrative textures, such as stippling or hatching, were predominantly used as an alternative to conventional Phong rendering. Recently, the potential of encoding information on surfaces or maps using different densities has also been recognized. This has the significant advantage that additional color can be used as another visual channel and the illustrative textures can then be overlaid. Effectively, it is thus possible to display multiple information, such as two different scalar fields on surfaces simultaneously. In previous work, these textures were manually generated and the choice of density was unempirically determined. Here, we first want to determine and understand the perceptual space of illustrative textures. We chose a succession of simplices with increasing dimensions as primitives for our textures: Dots, lines, and triangles. Thus, we explore the texture types of stippling, hatching, and triangles. We create a range of textures by sampling the density space uniformly. Then, we conduct three perceptual studies in which the participants performed pairwise comparisons for each texture type. We use multidimensional scaling (MDS) to analyze the perceptual spaces per category. The perception of stippling and triangles seems relatively similar. Both are adequately described by a 1D manifold in 2D space. The perceptual space of hatching consists of two main clusters: Crosshatched textures, and textures with only one hatching direction. However, the perception of hatching textures with only one hatching direction is similar to the perception of stippling and triangles. Based on our findings, we construct perceptually uniform illustrative textures. Afterwards, we provide concrete application examples for the constructed textures., Comment: 11 pages, 15 figures, to be published in IEEE Transactions on Visualization and Computer Graphics The supplementary material is available at https://www.doi.org/10.17605/OSF.IO/43C6V

In recent years, the use of expressive surface visualizations in the representation of vascular structures has gained significant attention. These visualizations provide a comprehensive understanding of complex anatomical structures and are crucial for treatment planning and medical education. However, to aid decision-making, physicians require visualizations that accurately depict anatomical structures and their spatial relationships in a clear and well-perceivable manner. This work extends a previous paper and presents a thorough examination of common techniques for encoding distance information of 3D vessel surfaces and provides an implementation of these visualizations. A Unity environment and detailed implementation instructions for sixteen different visualizations are provided. These visualizations can be classified into four categories: fundamental, surface-based, auxiliary, and illustrative. Furthermore, this extension includes tools to generate endpoint locations for vascular models. Overall this framework serves as a valuable resource for researchers in the field of vascular surface visualization by reducing the barrier to entry and promoting further research in this area. By providing an implementation of various visualizations, this paper aims to aid in the development of accurate and effective visual representations of vascular structures to assist in treatment planning and medical education.

Existing language and vision models achieve impressive performance in image-text understanding. Yet, it is an open question to what extent they can be used for language understanding in 3D environments and whether they implicitly acquire 3D object knowledge, e.g. about different views of an object. In this paper, we investigate whether a state-of-the-art language and vision model, CLIP, is able to ground perspective descriptions of a 3D object and identify canonical views of common objects based on text queries. We present an evaluation framework that uses a circling camera around a 3D object to generate images from different viewpoints and evaluate them in terms of their similarity to natural language descriptions. We find that a pre-trained CLIP model performs poorly on most canonical views and that fine-tuning using hard negative sampling and random contrasting yields good results even under conditions with little available training data.

In this numerical study areas of the carotid bifurcation and of a distal stenosis in the internal carotid artery are closely observed to evaluate the patient's current risks of ischemic stroke. An indicator for the vessel wall defects is the stress the blood is exerting on the surrounding vessel tissue, expressed standardly by the amplitude of the wall shear stress vector (WSS) and its oscillatory shear index. In contrast, our orientation-based shear evaluation detects negative shear stresses corresponding with reversal flow appearing in low shear areas. In our investigations of longitudinal component of the wall shear vector, tangential vectors aligned longitudinally with the vessel are necessary. However, as a result of stenosed regions and imaging segmentation techniques from patients' CTA scans, the geometry model's mesh is non-smooth on its surface areas and the automatically generated tangential vector field is discontinuous and multi-directional, making an interpretation of the orientation-based risk indicators unreliable. We improve the evaluation of longitudinal shear stress by applying the projection of the vessel's center-line to the surface to construct smooth tangetial field aligned longitudinaly with the vessel. We validate our approach for the longitudinal WSS component and the corresponding oscillatory index by comparing them to results obtained using automatically generated tangents in both rigid and elastic vessel modeling as well as to amplitude based indicators. The major benefit of our WSS evaluation based on its longitudinal component for the cardiovascular risk assessment is the detection of negative WSS indicating persitent reversal flow. This is impossible in the case of the amplitude-based WSS.

Narrative visualization aims to communicate scientific results to a general audience and garners significant attention in various applications. Merging exploratory and explanatory visualization could effectively support a non-expert understanding of scientific processes. Medical research results, e.g., mechanisms of the healthy human body, explanations of pathological processes, or avoidable risk factors for diseases, are also interesting to a general audience that includes patients and their relatives. This paper discusses how narrative techniques can be applied to medical visualization to tell data-driven stories about diseases. We address the general public comprising people interested in medicine without specific medical background knowledge. We derived a general template for the narrative medical visualization of diseases. Applying this template to three diseases selected to span bone, vascular, and organ systems, we discuss how narrative techniques can support visual communication and facilitate understanding of medical data. Other scientists can adapt our proposed template to inform an audience on other diseases. With our work, we show the potential of narrative medical visualization and conclude with a comprehensive research agenda.

In this work, we investigate how concepts from medical flow visualization can be applied to enhance stroke prevention diagnostics. Our focus lies on carotid stenoses, i.e., local narrowings of the major brain-supplying arteries, which are a frequent cause of stroke. Carotid surgery can reduce the stroke risk associated with stenoses, however, the procedure entails risks itself. Therefore, a thorough assessment of each case is necessary. In routine diagnostics, the morphology and hemodynamics of an afflicted vessel are separately analyzed using angiography and sonography, respectively. Blood flow simulations based on computational fluid dynamics could enable the visual integration of hemodynamic and morphological information and provide a higher resolution on relevant parameters. We identify and abstract the tasks involved in the assessment of stenoses and investigate how clinicians could derive relevant insights from carotid blood flow simulations. We adapt and refine a combination of techniques to facilitate this purpose, integrating spatiotemporal navigation, dimensional reduction, and contextual embedding. We evaluated and discussed our approach with an interdisciplinary group of medical practitioners, fluid simulation and flow visualization researchers. Our initial findings indicate that visualization techniques could promote usage of carotid blood flow simulations in practice., Comment: 12 pages, 10 figures

An accurate assessment of the cardiovascular system and prediction of cardiovascular diseases (CVDs) are crucial. Measured cardiac blood flow data provide insights about patient-specific hemodynamics, where many specialized techniques have been developed for the visual exploration of such data sets to better understand the influence of morphological and hemodynamic conditions on CVDs. However, there is a lack of machine learning approaches techniques that allow a feature-based classification of heart-healthy people and patients with CVDs. In this work, we investigate the potential of morphological and hemodynamic characteristics, extracted from measured blood flow data in the aorta, for the classification of heart-healthy volunteers and patients with bicuspid aortic valve (BAV). Furthermore, we research if there are characteristic features to classify male and female as well as older heart-healthy volunteers and BAV patients. We propose a data analysis pipeline for the classification of the cardiac status, encompassing feature selection, model training and hyperparameter tuning. In our experiments, we use several feature selection methods and classification algorithms to train separate models for the healthy subgroups and BAV patients. We report on classification performance and investigate the predictive power of morphological and hemodynamic features with regard to the classification of the defined groups. Finally, we identify the key features for the best models., Comment: 29 pages, 7 figures

We propose a visualization application, designed for the exploration of human spine simulation data. Our goal is to support research in biomechanical spine simulation and advance efforts to implement simulation-backed analysis in surgical applications. Biomechanical simulation is a state-of-the-art technique for analyzing load distributions of spinal structures. Through the inclusion of patient-specific data, such simulations may facilitate personalized treatment and customized surgical interventions. Difficulties in spine modelling and simulation can be partly attributed to poor result representation, which may also be a hindrance when introducing such techniques into a clinical environment. Comparisons of measurements across multiple similar anatomical structures and the integration of temporal data make commonly available diagrams and charts insufficient for an intuitive and systematic display of results. Therefore, we facilitate methods such as multiple coordinated views, abstraction and focus and context to display simulation outcomes in a dedicated tool. By linking the result data with patient-specific anatomy, we make relevant parameters tangible for clinicians. Furthermore, we introduce new concepts to show the directions of impact force vectors, which were not accessible before. We integrated our toolset into a spine segmentation and simulation pipeline and evaluated our methods with both surgeons and biomechanical researchers. When comparing our methods against standard representations that are currently in use, we found increases in accuracy and speed in data exploration tasks. In a qualitative review, domain experts deemed the tool highly useful when dealing with simulation result data, which typically combines time-dependent patient movement and the resulting force distributions on spinal structures., Comment: 9+2 pages, 11 figures, to be published in IEEE Transactions on Visualization and Computer Graphics

{When visualizing data in a realistically rendered 3D virtual environment, it is often important to represent not only the 3D scene but also overlaid information about additional, abstract data. These overlays must be usefully visible, i.e. be readable enough to convey the information they represent, but remain unobtrusive to avoid cluttering the view. We take a step toward establishing guidelines for designing such overlays by studying the relationship between three different patterns (filled, striped and dotted patterns), two pattern densities, the presence or not of a solid outline, two types of background (blank and with trees), and the opacity of the overlay. For each combination of factors, participants set the faintest and the strongest acceptable opacity values. Results from this first study suggest that i) ranges of acceptable opacities are around 20-70%, that ii) ranges can be extended by 5% by using an outline, and that iii) ranges shift based on features like pattern and density., Comment: IEEE VIS 2020

This paper provides a tutorial and survey for a specific kind of illustrative visualization technique: feature lines. We examine different feature line methods. For this, we provide the differential geometry behind these concepts and adapt this mathematical field to the discrete differential geometry. All discrete differential geometry terms are explained for triangulated surface meshes. These utilities serve as basis for the feature line methods. We provide the reader with all knowledge to re-implement every feature line method. Furthermore, we summarize the methods and suggest a guideline for which kind of surface which feature line algorithm is best suited. Our work is motivated by, but not restricted to, medical and biological surface models., Comment: 33 pages