898 results on '"Lavallée, P."'
Search Results
2. STRAW-b (STRings for Absorption length in Water-b): the second pathfinder mission for the Pacific Ocean Neutrino Experiment
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Holzapfel, Kilian, Spannfellner, Christian, Aghaei, Omid, Baron, Andrew, Bedard, Jeanette, Böhmer, Michael, Bosma, Jeff, Deis, Nathan, Fink, Christopher, Fruck, Christian, Gärtner, Andreas, Gernhäuser, Roman, Henningsen, Felix, Hotte, Ryan, Jenkyns, Reyna, Karl, Martina, Khera, Natasha, Khera, Nikhita, Kulin, Ian, Lam, Alex, Lavallee, Tim, Leismüller, Klaus, Papp, Laszlo, Pirenne, Benoit, Price, Emily, Qiu, Tom, Rea, Immacolata Carmen, Resconi, Elisa, Round, Adrian, Rott, Carsten, Ruskey, Albert, Ruohan, Li, Sasaki, Keita, Tradewell, Matt, Traxler, Michael, Vivolo, Daniele, Wagner, Seann, Winter, Eva Laura, and Wolf, Martin
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Astrophysics - Instrumentation and Methods for Astrophysics ,Physics - Instrumentation and Detectors - Abstract
Since 2018, the potential for a high-energy neutrino telescope, named the Pacific Ocean Neutrino Experiment (P-ONE), has been thoroughly examined by two pathfinder missions, STRAW and STRAW-b, short for short for Strings for Absorption Length in Water. The P-ONE project seeks to install a neutrino detector with a one cubic kilometer volume in the Cascadia Basin's deep marine surroundings, situated near the western shores of Vancouver Island, Canada. To assess the environmental conditions and feasibility of constructing a neutrino detector of that scale, the pathfinder missions, STRAW and STRAW-b, have been deployed at a depth of 2.7 km within the designated site for P-ONE and were connected to the NEPTUNE observatory, operated by Ocean Networks Canada (ONC). While STRAW focused on analyzing the optical properties of water in the Cascadia Basin, \ac{strawb} employed cameras and spectrometers to investigate the characteristics of bioluminescence in the deep-sea environment. This report introduces the STRAW-b concept, covering its scientific objectives and the instrumentation used. Furthermore, it discusses the design considerations implemented to guarantee a secure and dependable deployment process of STRAW-b. Additionally, it showcases the data collected by battery-powered loggers, which monitored the mechanical stress on the equipment throughout the deployment. The report also offers an overview of STRAW-b's operation, with a specific emphasis on the notable advancements achieved in the data acquisition (DAQ) system and its successful integration with the server infrastructure of ONC., Comment: 20 pages, 11 figures, 2 tables
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- 2023
3. DELE1 haploinsufficiency causes resistance to mitochondrial stress-induced apoptosis in monosomy 5/del(5q) AML
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Spinella, Jean-François, Chagraoui, Jalila, Moison, Céline, Lavallée, Vincent P., Boivin, Isabel, Gracias, Deanne, Lavallée, Sylvie, Carpentier, Guillaume Richard, Beliveau, François, Hébert, Josée, and Sauvageau, Guy
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- 2024
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4. The protist Aurantiochytrium has universal subtelomeric rDNAs and is a host for mirusviruses
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Collier, Jackie L, Rest, Joshua S, Gallot-Lavallée, Lucie, Lavington, Erik, Kuo, Alan, Jenkins, Jerry, Plott, Chris, Pangilinan, Jasmyn, Daum, Chris, Grigoriev, Igor V, Filloramo, Gina V, Novák Vanclová, Anna MG, and Archibald, John M
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Microbiology ,Biological Sciences ,Genetics ,2.2 Factors relating to the physical environment ,Life Below Water ,DNA ,Ribosomal ,Viruses ,Genome ,Heterochromatin ,Eukaryota ,Telomere ,Phylogeny ,LORE-TEARS ,duplodnaviria ,endogenous viruses ,host-virus co-evolution ,labyrinthulomycetes ,long repeated-telomere and rDNA spacers ,protist genome assembly ,subtelomeric rDNAs ,thraustochytrids ,varidnaviria ,viral episome ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Developmental Biology ,Biological sciences ,Biomedical and clinical sciences ,Psychology - Abstract
Viruses are the most abundant biological entities in the world's oceans, where they play important ecological and biogeochemical roles. Metagenomics is revealing new groups of eukaryotic viruses, although disconnected from known hosts. Among these are the recently described mirusviruses, which share some similarities with herpesviruses.1 50 years ago, "herpes-type" viral particles2 were found in a thraustochytrid member of the labyrinthulomycetes, a diverse group of abundant and ecologically important marine eukaryotes,3,4 but could not be further characterized by methods then available. Long-read sequencing has allowed us to connect the biology of mirusviruses and thraustochytrids. We sequenced the genome of the genetically tractable model thraustochytrid Aurantiochytrium limacinum ATCC MYA-1381 and found that its 26 linear chromosomes have an extraordinary configuration. Subtelomeric ribosomal DNAs (rDNAs) found at all chromosome ends are interspersed with long repeated sequence elements denoted as long repeated-telomere and rDNA spacers (LORE-TEARS). We identified two genomic elements that are related to mirusvirus genomes. The first is a ∼300-kbp episome (circular element 1 [CE1]) present at a high copy number. Strikingly, the second, distinct, mirusvirus-like element is integrated between two sets of rDNAs and LORE-TEARS at the left end of chromosome 15 (LE-Chr15). Similar to metagenomically derived mirusviruses, these putative A. limacinum mirusviruses have a virion module related to that of herpesviruses along with an informational module related to nucleocytoplasmic large DNA viruses (NCLDVs). CE1 and LE-Chr15 bear striking similarities to episomal and endogenous latent forms of herpesviruses, respectively, and open new avenues of research into marine virus-host interactions.
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- 2023
5. Overlapping and Robust Edge-Colored Clustering in Hypergraphs
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Crane, Alex, Lavallee, Brian, Sullivan, Blair D., and Veldt, Nate
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Computer Science - Data Structures and Algorithms - Abstract
A recent trend in data mining has explored (hyper)graph clustering algorithms for data with categorical relationship types. Such algorithms have applications in the analysis of social, co-authorship, and protein interaction networks, to name a few. Many such applications naturally have some overlap between clusters, a nuance which is missing from current combinatorial models. Additionally, existing models lack a mechanism for handling noise in datasets. We address these concerns by generalizing Edge-Colored Clustering, a recent framework for categorical clustering of hypergraphs. Our generalizations allow for a budgeted number of either (a) overlapping cluster assignments or (b) node deletions. For each new model we present a greedy algorithm which approximately minimizes an edge mistake objective, as well as bicriteria approximations where the second approximation factor is on the budget. Additionally, we address the parameterized complexity of each problem, providing FPT algorithms and hardness results.
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- 2023
6. Effects of implementation strategies on nursing practice and patient outcomes: a comprehensive systematic review and meta-analysis
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Fontaine, Guillaume, Vinette, Billy, Weight, Charlene, Maheu-Cadotte, Marc-André, Lavallée, Andréane, Deschênes, Marie-France, Lapierre, Alexandra, Castiglione, Sonia A., Chicoine, Gabrielle, Rouleau, Geneviève, Argiropoulos, Nikolas, Konnyu, Kristin, Mooney, Meagan, Cassidy, Christine E., Mailhot, Tanya, Lavoie, Patrick, Pépin, Catherine, Cossette, Sylvie, Gagnon, Marie-Pierre, Semenic, Sonia, Straiton, Nicola, and Middleton, Sandy
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- 2024
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7. Induction and maintenance of sequential intravesical gemcitabine/docetaxel for intermediate and high-risk non-muscle invasive bladder cancer with different dosage protocols
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Ben-David, Reuben, Tillu, Neeraja, Alerasool, Parissa, Bieber, Christine, Ranti, Daniel, Tolani, Serena, Eisenhauer, Justin, Chung, Rainjade, Lavallée, Etienne, Waingankar, Nikhil, Attalla, Kyrollis, Wiklund, Peter, Mehrazin, Reza, Anderson, Christopher B., and Sfakianos, John P.
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- 2024
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8. Senescence drives immunotherapy resistance by inducing an immunosuppressive tumor microenvironment
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Maggiorani, Damien, Le, Oanh, Lisi, Véronique, Landais, Séverine, Moquin-Beaudry, Gaël, Lavallée, Vincent Philippe, Decaluwe, Hélène, and Beauséjour, Christian
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- 2024
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9. Bicentric retrospective study comparing the postoperative outcomes of patients treated surgically for bladder stones with or without concomitant surgery for BPH
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Chapelle, Caroline, Lavallée, Etienne, Vallée, Maxime, and Descazeaud, Aurélien
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- 2024
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10. Plug flow and brecciation in volcanic conduits can emerge from shear-induced crystal migration in otherwise Newtonian magmas
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Jérémie Vasseur, Fabian B. Wadsworth, Donald B. Dingwell, and Yan Lavallée
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Geology ,QE1-996.5 ,Environmental sciences ,GE1-350 - Abstract
Abstract In the Earth, the flow of crystal-bearing magma is thought to be non-Newtonian and shear thinning, but the physical origin for this is poorly understood. We use hydro-granular theory to show that the decoupled migration of crystals toward conduit cores during magma ascent is a tenable microphysical mechanism for plug flow, emergent in an otherwise purely Newtonian crystal-bearing magma. We use a numerical conduit model to define the flow development length beyond which crystal migration dominates and strain localises near conduit margins. Applied to magma ascent scenarios, we show that this crystal-migration strain localisation only develops in high crystallinity magmas or magmas ascending in very narrow cracks/conduits. In all other scenarios, crystals do not contribute to non-Newtonian behaviour and such magmas are usually strictly Newtonian. The ascent of very crystal-rich dome magma could be associated with strain localisation and crystal depletion at the conduit margins, lubricating ascent through the crust.
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- 2024
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11. Immunogenicity of Non-Mutated Ovarian Cancer-Specific Antigens
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Leslie Hesnard, Catherine Thériault, Maxime Cahuzac, Chantal Durette, Krystel Vincent, Marie-Pierre Hardy, Joël Lanoix, Gabriel Ouellet Lavallée, Juliette Humeau, Pierre Thibault, and Claude Perreault
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tumor-specific antigen ,vaccine ,mass spectrometry ,antigen presentation ,immunogenicity ,dendritic cells ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Epithelial ovarian cancer (EOC) has not significantly benefited from advances in immunotherapy, mainly because of the lack of well-defined actionable antigen targets. Using proteogenomic analyses of primary EOC tumors, we previously identified 91 aberrantly expressed tumor-specific antigens (TSAs) originating from unmutated genomic sequences. Most of these TSAs derive from non-exonic regions, and their expression results from cancer-specific epigenetic changes. The present study aimed to evaluate the immunogenicity of 48 TSAs selected according to two criteria: presentation by highly prevalent HLA allotypes and expression in a significant fraction of EOC tumors. Using targeted mass spectrometry analyses, we found that pulsing with synthetic TSA peptides leads to a high-level presentation on dendritic cells. TSA abundance correlated with the predicted binding affinity to the HLA allotype. We stimulated naïve CD8 T cells from healthy blood donors with TSA-pulsed dendritic cells and assessed their expansion with two assays: MHC-peptide tetramer staining and TCR Vβ CDR3 sequencing. We report that these TSAs can expand sizeable populations of CD8 T cells and, therefore, represent attractive targets for EOC immunotherapy.
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- 2024
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12. BLOOM: A 176B-Parameter Open-Access Multilingual Language Model
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Workshop, BigScience, Scao, Teven Le, Fan, Angela, Akiki, Christopher, Pavlick, Ellie, Ilić, Suzana, Hesslow, Daniel, Castagné, Roman, Luccioni, Alexandra Sasha, Yvon, François, Gallé, Matthias, Tow, Jonathan, Rush, Alexander M., Biderman, Stella, Webson, Albert, Ammanamanchi, Pawan Sasanka, Wang, Thomas, Sagot, Benoît, Muennighoff, Niklas, del Moral, Albert Villanova, Ruwase, Olatunji, Bawden, Rachel, Bekman, Stas, McMillan-Major, Angelina, Beltagy, Iz, Nguyen, Huu, Saulnier, Lucile, Tan, Samson, Suarez, Pedro Ortiz, Sanh, Victor, Laurençon, Hugo, Jernite, Yacine, Launay, Julien, Mitchell, Margaret, Raffel, Colin, Gokaslan, Aaron, Simhi, Adi, Soroa, Aitor, Aji, Alham Fikri, Alfassy, Amit, Rogers, Anna, Nitzav, Ariel Kreisberg, Xu, Canwen, Mou, Chenghao, Emezue, Chris, Klamm, Christopher, Leong, Colin, van Strien, Daniel, Adelani, David Ifeoluwa, Radev, Dragomir, Ponferrada, Eduardo González, Levkovizh, Efrat, Kim, Ethan, Natan, Eyal Bar, De Toni, Francesco, Dupont, Gérard, Kruszewski, Germán, Pistilli, Giada, Elsahar, Hady, Benyamina, Hamza, Tran, Hieu, Yu, Ian, Abdulmumin, Idris, Johnson, Isaac, Gonzalez-Dios, Itziar, de la Rosa, Javier, Chim, Jenny, Dodge, Jesse, Zhu, Jian, Chang, Jonathan, Frohberg, Jörg, Tobing, Joseph, Bhattacharjee, Joydeep, Almubarak, Khalid, Chen, Kimbo, Lo, Kyle, Von Werra, Leandro, Weber, Leon, Phan, Long, allal, Loubna Ben, Tanguy, Ludovic, Dey, Manan, Muñoz, Manuel Romero, Masoud, Maraim, Grandury, María, Šaško, Mario, Huang, Max, Coavoux, Maximin, Singh, Mayank, Jiang, Mike Tian-Jian, Vu, Minh Chien, Jauhar, Mohammad A., Ghaleb, Mustafa, Subramani, Nishant, Kassner, Nora, Khamis, Nurulaqilla, Nguyen, Olivier, Espejel, Omar, de Gibert, Ona, Villegas, Paulo, Henderson, Peter, Colombo, Pierre, Amuok, Priscilla, Lhoest, Quentin, Harliman, Rheza, Bommasani, Rishi, López, Roberto Luis, Ribeiro, Rui, Osei, Salomey, Pyysalo, Sampo, Nagel, Sebastian, Bose, Shamik, Muhammad, Shamsuddeen Hassan, Sharma, Shanya, Longpre, Shayne, Nikpoor, Somaieh, Silberberg, Stanislav, Pai, Suhas, Zink, Sydney, Torrent, Tiago Timponi, Schick, Timo, Thrush, Tristan, Danchev, Valentin, Nikoulina, Vassilina, Laippala, Veronika, Lepercq, Violette, Prabhu, Vrinda, Alyafeai, Zaid, Talat, Zeerak, Raja, Arun, Heinzerling, Benjamin, Si, Chenglei, Taşar, Davut Emre, Salesky, Elizabeth, Mielke, Sabrina J., Lee, Wilson Y., Sharma, Abheesht, Santilli, Andrea, Chaffin, Antoine, Stiegler, Arnaud, Datta, Debajyoti, Szczechla, Eliza, Chhablani, Gunjan, Wang, Han, Pandey, Harshit, Strobelt, Hendrik, Fries, Jason Alan, Rozen, Jos, Gao, Leo, Sutawika, Lintang, Bari, M Saiful, Al-shaibani, Maged S., Manica, Matteo, Nayak, Nihal, Teehan, Ryan, Albanie, Samuel, Shen, Sheng, Ben-David, Srulik, Bach, Stephen H., Kim, Taewoon, Bers, Tali, Fevry, Thibault, Neeraj, Trishala, Thakker, Urmish, Raunak, Vikas, Tang, Xiangru, Yong, Zheng-Xin, Sun, Zhiqing, Brody, Shaked, Uri, Yallow, Tojarieh, Hadar, Roberts, Adam, Chung, Hyung Won, Tae, Jaesung, Phang, Jason, Press, Ofir, Li, Conglong, Narayanan, Deepak, Bourfoune, Hatim, Casper, Jared, Rasley, Jeff, Ryabinin, Max, Mishra, Mayank, Zhang, Minjia, Shoeybi, Mohammad, Peyrounette, Myriam, Patry, Nicolas, Tazi, Nouamane, Sanseviero, Omar, von Platen, Patrick, Cornette, Pierre, Lavallée, Pierre François, Lacroix, Rémi, Rajbhandari, Samyam, Gandhi, Sanchit, Smith, Shaden, Requena, Stéphane, Patil, Suraj, Dettmers, Tim, Baruwa, Ahmed, Singh, Amanpreet, Cheveleva, Anastasia, Ligozat, Anne-Laure, Subramonian, Arjun, Névéol, Aurélie, Lovering, Charles, Garrette, Dan, Tunuguntla, Deepak, Reiter, Ehud, Taktasheva, Ekaterina, Voloshina, Ekaterina, Bogdanov, Eli, Winata, Genta Indra, Schoelkopf, Hailey, Kalo, Jan-Christoph, Novikova, Jekaterina, Forde, Jessica Zosa, Clive, Jordan, Kasai, Jungo, Kawamura, Ken, Hazan, Liam, Carpuat, Marine, Clinciu, Miruna, Kim, Najoung, Cheng, Newton, Serikov, Oleg, Antverg, Omer, van der Wal, Oskar, Zhang, Rui, Zhang, Ruochen, Gehrmann, Sebastian, Mirkin, Shachar, Pais, Shani, Shavrina, Tatiana, Scialom, Thomas, Yun, Tian, Limisiewicz, Tomasz, Rieser, Verena, Protasov, Vitaly, Mikhailov, Vladislav, Pruksachatkun, Yada, Belinkov, Yonatan, Bamberger, Zachary, Kasner, Zdeněk, Rueda, Alice, Pestana, Amanda, Feizpour, Amir, Khan, Ammar, Faranak, Amy, Santos, Ana, Hevia, Anthony, Unldreaj, Antigona, Aghagol, Arash, Abdollahi, Arezoo, Tammour, Aycha, HajiHosseini, Azadeh, Behroozi, Bahareh, Ajibade, Benjamin, Saxena, Bharat, Ferrandis, Carlos Muñoz, McDuff, Daniel, Contractor, Danish, Lansky, David, David, Davis, Kiela, Douwe, Nguyen, Duong A., Tan, Edward, Baylor, Emi, Ozoani, Ezinwanne, Mirza, Fatima, Ononiwu, Frankline, Rezanejad, Habib, Jones, Hessie, Bhattacharya, Indrani, Solaiman, Irene, Sedenko, Irina, Nejadgholi, Isar, Passmore, Jesse, Seltzer, Josh, Sanz, Julio Bonis, Dutra, Livia, Samagaio, Mairon, Elbadri, Maraim, Mieskes, Margot, Gerchick, Marissa, Akinlolu, Martha, McKenna, Michael, Qiu, Mike, Ghauri, Muhammed, Burynok, Mykola, Abrar, Nafis, Rajani, Nazneen, Elkott, Nour, Fahmy, Nour, Samuel, Olanrewaju, An, Ran, Kromann, Rasmus, Hao, Ryan, Alizadeh, Samira, Shubber, Sarmad, Wang, Silas, Roy, Sourav, Viguier, Sylvain, Le, Thanh, Oyebade, Tobi, Le, Trieu, Yang, Yoyo, Nguyen, Zach, Kashyap, Abhinav Ramesh, Palasciano, Alfredo, Callahan, Alison, Shukla, Anima, Miranda-Escalada, Antonio, Singh, Ayush, Beilharz, Benjamin, Wang, Bo, Brito, Caio, Zhou, Chenxi, Jain, Chirag, Xu, Chuxin, Fourrier, Clémentine, Periñán, Daniel León, Molano, Daniel, Yu, Dian, Manjavacas, Enrique, Barth, Fabio, Fuhrimann, Florian, Altay, Gabriel, Bayrak, Giyaseddin, Burns, Gully, Vrabec, Helena U., Bello, Imane, Dash, Ishani, Kang, Jihyun, Giorgi, John, Golde, Jonas, Posada, Jose David, Sivaraman, Karthik Rangasai, Bulchandani, Lokesh, Liu, Lu, Shinzato, Luisa, de Bykhovetz, Madeleine Hahn, Takeuchi, Maiko, Pàmies, Marc, Castillo, Maria A, Nezhurina, Marianna, Sänger, Mario, Samwald, Matthias, Cullan, Michael, Weinberg, Michael, De Wolf, Michiel, Mihaljcic, Mina, Liu, Minna, Freidank, Moritz, Kang, Myungsun, Seelam, Natasha, Dahlberg, Nathan, Broad, Nicholas Michio, Muellner, Nikolaus, Fung, Pascale, Haller, Patrick, Chandrasekhar, Ramya, Eisenberg, Renata, Martin, Robert, Canalli, Rodrigo, Su, Rosaline, Su, Ruisi, Cahyawijaya, Samuel, Garda, Samuele, Deshmukh, Shlok S, Mishra, Shubhanshu, Kiblawi, Sid, Ott, Simon, Sang-aroonsiri, Sinee, Kumar, Srishti, Schweter, Stefan, Bharati, Sushil, Laud, Tanmay, Gigant, Théo, Kainuma, Tomoya, Kusa, Wojciech, Labrak, Yanis, Bajaj, Yash Shailesh, Venkatraman, Yash, Xu, Yifan, Xu, Yingxin, Xu, Yu, Tan, Zhe, Xie, Zhongli, Ye, Zifan, Bras, Mathilde, Belkada, Younes, and Wolf, Thomas
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Computer Science - Computation and Language - Abstract
Large language models (LLMs) have been shown to be able to perform new tasks based on a few demonstrations or natural language instructions. While these capabilities have led to widespread adoption, most LLMs are developed by resource-rich organizations and are frequently kept from the public. As a step towards democratizing this powerful technology, we present BLOOM, a 176B-parameter open-access language model designed and built thanks to a collaboration of hundreds of researchers. BLOOM is a decoder-only Transformer language model that was trained on the ROOTS corpus, a dataset comprising hundreds of sources in 46 natural and 13 programming languages (59 in total). We find that BLOOM achieves competitive performance on a wide variety of benchmarks, with stronger results after undergoing multitask prompted finetuning. To facilitate future research and applications using LLMs, we publicly release our models and code under the Responsible AI License.
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- 2022
13. Senescence drives immunotherapy resistance by inducing an immunosuppressive tumor microenvironment
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Damien Maggiorani, Oanh Le, Véronique Lisi, Séverine Landais, Gaël Moquin-Beaudry, Vincent Philippe Lavallée, Hélène Decaluwe, and Christian Beauséjour
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Science - Abstract
Abstract The potential of immune checkpoint inhibitors (ICI) may be limited in situations where immune cell fitness is impaired. Here, we show that the efficacy of cancer immunotherapies is compromised by the accumulation of senescent cells in mice and in the context of therapy-induced senescence (TIS). Resistance to immunotherapy is associated with a decrease in the accumulation and activation of CD8 T cells within tumors. Elimination of senescent cells restores immune homeostasis within the tumor micro-environment (TME) and increases mice survival in response to immunotherapy. Using single-cell transcriptomic analysis, we observe that the injection of ABT263 (Navitoclax) reverses the exacerbated immunosuppressive profile of myeloid cells in the TME. Elimination of these myeloid cells also restores CD8 T cell proliferation in vitro and abrogates immunotherapy resistance in vivo. Overall, our study suggests that the use of senolytic drugs before ICI may constitute a pharmacological approach to improve the effectiveness of cancer immunotherapies.
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- 2024
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14. Nova Sagittarii 1943 (V1148 Sgr): A Luminous Red Nova?
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Bond, Howard E., Mink, Jessica, Doane, Allison, and Lavallee, Sarah
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Astrophysics - Solar and Stellar Astrophysics ,Astrophysics - High Energy Astrophysical Phenomena - Abstract
Nova Sagittarii 1943 (V1148 Sgr) was an 8th-mag optical transient that was unusual in having a late-type spectrum during its outburst, in striking contrast to the normal high-excitation spectra seen in classical novae. Unfortunately, only an approximate position was given in the discovery announcement, hampering follow-up attempts to observe its remnant. We have identified the nova on two photographic plates in the Harvard archive, allowing us to determine a precise astrometric position. Apart from these two plates, obtained in 1943 and 1944, none of the photographs in the Harvard collection, from 1897 to 1950, show V1148 Sgr to limits as faint as g ~ 18.3. Modern deep images show a candidate remnant at i ~ 19.2, lying only 0".26 from the site of the nova. V1148 Sgr may have been a luminous red nova (LRN), only the sixth one known in the Milky Way. However, it lacks the near- and mid-infrared excesses, and millimeter-wave emission, seen in other LRNe, leaving its nature uncertain. We urge spectroscopy of the candidate remnant., Comment: Accepted by Astronomical Journal
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- 2022
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15. Parameterized Complexity of Gerrymandering
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Fraser, Andrew, Lavallee, Brian, and Sullivan, Blair D.
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Computer Science - Data Structures and Algorithms ,Computer Science - Computer Science and Game Theory - Abstract
In a representative democracy, the electoral process involves partitioning geographical space into districts which each elect a single representative. These representatives craft and vote on legislation, incentivizing political parties to win as many districts as possible (ideally a plurality). Gerrymandering is the process by which district boundaries are manipulated to the advantage of a desired candidate or party. We study the parameterized complexity of Gerrymandering, a graph problem (as opposed to Euclidean space) formalized by Cohen-Zemach et al. (AAMAS 2018) and Ito et al. (AAMAS 2019) where districts partition vertices into connected subgraphs. We prove that Unit Weight Gerrymandering is W[2]-hard on trees (even when the depth is two) with respect to the number of districts $k$. Moreover, we show that Unit Weight Gerrymandering remains W[2]-hard in trees with $\ell$ leaves with respect to the combined parameter $k+\ell$. In contrast, Gupta et al. (SAGT 2021) give an FPT algorithm for Gerrymandering on paths with respect to $k$. To complement our results and fill this gap, we provide an algorithm to solve Gerrymandering that is FPT in $k$ when $\ell$ is a fixed constant.
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- 2022
16. Focus on Adoption: Changes, Evolution and Areas of Tension
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Doris Chateauneuf, Anne-Marie Piché, and Carmen Lavallée
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filiation ,family ,adoption ,child protection ,origins ,international adoption ,Ethnology. Social and cultural anthropology ,GN301-674 ,The family. Marriage. Woman ,HQ1-2044 - Abstract
Research framework: Adoption has existed for many years as an institution that promotes family ties, taking forms that vary based on place, culture and time. However, the ways in which the social actors involved use adoption reveal specific conceptions of the child, the family, affiliations and family relationships. Objectives: This issue aims to identify the evolution of certain social and legislative adoption practices and to discuss the family and identity realities associated with adoption, in order to provide an analysis of how it has changed over time.Methodology: The articles in this issue highlight the many aspects of adoption: not only does it affect a number of different actors (adopters, adoptees and parents of origin), but it also raises concerns and questions of a social, legal and family nature.Results: Adoption is a subject of study at the intersection of several disciplines, including law, anthropology, sociology, psychology and social work. The various cases discussed in this issue also illustrate the importance of reflecting on the implications of adoption for individuals, families and society as a whole.Conclusions: The cases cited in these articles illustrate the need to approach adoption from a dynamic perspective that takes into account the evolution, contexts and changes involved in all the issues associated with it.Contribution: This issue is intended to stimulate reflection, both now and in the future.
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- 2024
17. Le point sur l’adoption : changements, évolution et zones de tension
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Doris Chateauneuf, Anne-Marie Piché, and Carmen Lavallée
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famille ,filiation ,protection de l’enfance ,origines ,adoption internationale ,Adoption ,Ethnology. Social and cultural anthropology ,GN301-674 ,The family. Marriage. Woman ,HQ1-2044 - Abstract
Cadre de recherche : L’adoption, comme institution créatrice de liens filiatifs, existe depuis de nombreuses années et prend différentes formes selon les lieux, les cultures et l’époque. Toutefois, l’utilisation que les acteurs sociaux en font témoigne d’une certaine conception de l’enfant, de la famille, des affiliations et des relations familiales.Objectifs : Le présent numéro souhaite identifier l’évolution de certaines pratiques sociales et législatives en matière d’adoption, discuter des réalités familiales et identitaires associées à cette institution et comprendre comment elle s’est transformée.Méthodologie : Les différentes contributions des autrices et auteurs mettent en lumière la multiplicité des enjeux que touchent l’adoption : non seulement celle-ci concerne différents acteurs (adoptants, adoptés et parents d’origine), mais elle soulève également des préoccupations et des réflexions de nature sociale, juridique et familiale.Résultats : L’adoption constitue donc un objet d’étude qui se situe au carrefour de plusieurs disciplines telles que le droit, l’anthropologie, la sociologie, la psychologie et le travail social. Les différents cas de figure rapportés et discutés dans le présent numéro illustrent également la pertinence de réfléchir aux implications que pose l’adoption pour les individus, mais aussi pour les familles et pour la société dans son ensemble.Conclusions : Ces exemples révèlent la nécessité d’aborder les problématiques associées à l’adoption dans une perspective dynamique qui tienne compte de l’évolution, des contextes et des changements relatifs à son utilisation.Contribution : Le présent numéro se veut une contribution à ces réflexions actuelles et à venir.
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- 2024
18. Comparison of rectal swabs and fecal samples for the detection of Clostridioides difficile infections with a new in-house PCR assay
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Ann Huletsky, Vivian G. Loo, Yves Longtin, Jean Longtin, Sylvie Trottier, Cécile L. Tremblay, Rodica Gilca, Christian Lavallée, Éliel Brochu, Ève Bérubé, Martine Bastien, Marthe Bernier, Martin Gagnon, Johanne Frenette, Julie Bestman-Smith, Louise Deschênes, and Michel G. Bergeron
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Clostridioides difficile ,diagnostics ,molecular methods ,rectal swabs ,Microbiology ,QR1-502 - Abstract
ABSTRACT The detection of Clostridioides difficile infections (CDI) relies on testing the stool of patients by toxin antigen detection or PCR methods. Although PCR and antigenic methods have significantly reduced the time to results, delays in stool collection can significantly add to the turnaround time. The use of rectal swabs to detect C. difficile could considerably reduce the time to diagnosis of CDI. We developed a new rapid PCR assay for the detection of C. difficile and evaluated this PCR assay on both stool and rectal swab specimens. We recruited a total of 623 patients suspected of C. difficile infection. Stool samples and rectal swabs were collected from each patient and tested by our PCR assay. Stool samples were also tested by the cell cytotoxicity neutralization assay (CCNA) as a reference. The PCR assay detected C. difficile in 60 stool specimens and 61 rectal swabs for the 64 patients whose stool samples were positive for C. difficile by CCNA. The PCR assay detected an additional 35 and 36 stool and rectal swab specimens positive for C. difficile, respectively, for sensitivity with stools and rectal swabs of 93.8% and 95.3%, specificity of 93.7% and 93.6%, positive predictive values of 63.2% and 62.9%, and negative predictive values of 99.2% and 99.4%. Detection of C. difficile using PCR on stools or rectal swabs yielded reliable and similar results. The use of PCR tests on rectal swabs could reduce turnaround time for CDI detection, thus improving CDI management and control of C. difficile transmission.IMPORTANCEClostridioides difficile infection (CDI) is the leading cause of healthcare-associated diarrhea, resulting in high morbidity, mortality, and economic burden. In clinical laboratories, CDI testing is currently performed on stool samples collected from patients with diarrhea. However, the diagnosis of CDI can be delayed by the time required to collect stool samples. Barriers to sample collection could be overcome by using a rectal swab instead of a stool sample. Our study showed that CDI can be identified rapidly and reliably by a new PCR assay developed in our laboratory on both stool and rectal swab specimens. The use of PCR tests on rectal swabs could reduce the time for the detection of CDI and improve the management of this infection. It should also provide a useful alternative for infection-control practitioners to better control the spread of C. difficile.
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- 2024
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19. Immunotherapeutic targeting of surfaceome heterogeneity in AML
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Marie-Eve Bordeleau, Éric Audemard, Arnaud Métois, Louis Theret, Véronique Lisi, Azer Farah, Jean-François Spinella, Jalila Chagraoui, Ossama Moujaber, Léo Aubert, Banafsheh Khakipoor, Laure Mallinger, Isabel Boivin, Nadine Mayotte, Azadeh Hajmirza, Éric Bonneil, François Béliveau, Sybille Pfammatter, Albert Feghaly, Geneviève Boucher, Patrick Gendron, Pierre Thibault, Frédéric Barabé, Sébastien Lemieux, Guillaume Richard-Carpentier, Josée Hébert, Vincent-Philippe Lavallée, Philippe P. Roux, and Guy Sauvageau
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CP: Cancer ,Biology (General) ,QH301-705.5 - Abstract
Summary: Immunotherapy remains underexploited in acute myeloid leukemia (AML) compared to other hematological malignancies. Currently, gemtuzumab ozogamicin is the only therapeutic antibody approved for this disease. Here, to identify potential targets for immunotherapeutic intervention, we analyze the surface proteome of 100 genetically diverse primary human AML specimens for the identification of cell surface proteins and conduct single-cell transcriptome analyses on a subset of these specimens to assess antigen expression at the sub-population level. Through this comprehensive effort, we successfully identify numerous antigens and markers preferentially expressed by primitive AML cells. Many identified antigens are targeted by therapeutic antibodies currently under clinical evaluation for various cancer types, highlighting the potential therapeutic value of the approach. Importantly, this initiative uncovers AML heterogeneity at the surfaceome level, identifies several antigens and potential primitive cell markers characterizing AML subgroups, and positions immunotherapy as a promising approach to target AML subgroup specificities.
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- 2024
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20. Therapeutic Inducers of Natural Killer cell Killing (ThINKK): preclinical assessment of safety and efficacy in allogeneic hematopoietic stem cell transplant settings
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Nicolas Poirier, Elie Haddad, Michel Duval, Valérie Paquin, Séverine Leclerc, Véronique Lisi, Carolina Marmolejo, Hicham Affia, Paulo Cordeiro, Yves Théorêt, Gregor Andelfinger, Vincent Philippe Lavallée, and Sabine Herblot
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Background Allogeneic hematopoietic stem cell transplantation (HSCT) remains the standard of care for chemotherapy-refractory leukemia patients, but cure rates are still dismal. To prevent leukemia relapse following HSCT, we aim to improve the early graft-versus-leukemia effect mediated by natural killer (NK) cells. Our approach is based on the adoptive transfer of Therapeutic Inducers of Natural Killer cell Killing (ThINKK). ThINKK are expanded and differentiated from HSC, and exhibit blood plasmacytoid dendritic cell (pDC) features. We previously demonstrated that ThINKK stimulate NK cells and control acute lymphoblastic leukemia (ALL) development in a preclinical mouse model of HSCT for ALL. Here, we assessed the cellular identity of ThINKK and investigated their potential to activate allogeneic T cells. We finally evaluated the effect of immunosuppressive drugs on ThINKK-NK cell interaction.Methods ThINKK cellular identity was explored using single-cell RNA sequencing and flow cytometry. Their T-cell activating potential was investigated by coculture of allogeneic T cells and antigen-presenting cells in the presence or the absence of ThINKK. A preclinical human-to-mouse xenograft model was used to evaluate the impact of ThINKK injections on graft-versus-host disease (GvHD). Finally, the effect of immunosuppressive drugs on ThINKK-induced NK cell cytotoxicity against ALL cells was tested.Results The large majority of ThINKK shared the key characteristics of canonical blood pDC, including potent type-I interferon (IFN) production following Toll-like receptor stimulation. A minor subset expressed some, although not all, markers of other dendritic cell populations. Importantly, while ThINKK were not killed by allogeneic T or NK cells, they did not increase T cell proliferation induced by antigen-presenting cells nor worsened GvHD in vivo. Finally, tacrolimus, sirolimus or mycophenolate did not decrease ThINKK-induced NK cell activation and cytotoxicity.Conclusion Our results indicate that ThINKK are type I IFN producing cells with low T cell activation capacity. Therefore, ThINKK adoptive immunotherapy is not expected to increase the risk of GvHD after allogeneic HSCT. Furthermore, our data predict that the use of tacrolimus, sirolimus or mycophenolate as anti-GvHD prophylaxis regimen will not decrease ThINKK therapeutic efficacy. Collectively, these preclinical data support the testing of ThINKK immunotherapy in a phase I clinical trial.
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- 2024
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21. Accountability Measures in Higher Education and Academic Workload: A Ten-Year Comparison
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Nakano Koga, Silvia Mirlene, Beaupré-Lavallée, Alexandre, and Bégin-Caouette, Olivier
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At the core of New Public Management (NPM) reforms sits the concept of accountability of publicly funded organizations. In Canada, it is suggested that provinces have increased the number of accountability procedures imposed on universities and that those measures would have had an impact on professors' academic workload. This study discusses the evolution of academic workload and evaluation of professors' activities over the last decade, as well as the current distribution of academic workload among the university staff. It relies on the Canadian faculty's perspectives collected through the 2007 Changing Academic Profession (CAP) study (n = 1151) and the 2017 Academic Profession in the Knowledge Society (APIKS) study (n = 2968). Findings suggest that academic workload increased significantly in the 10 years that academic activities are significantly more evaluated, although by academics themselves in a smaller proportion, and that the administrative burden lies more heavily on female and senior faculty members. Descriptive statistics and a MANOVA comparing the scores of five variables in 2007 and 2017 suggest that academic workload increased significantly in 10 years, academic activities are significantly more evaluated, although less by academics themselves, female academics report dedicating more time to administrative tasks and being more frequently evaluated, and senior administrative staff and external reviewers are perceived as being more involved in the evaluation of academic activities in 2017 than in 2007. Our interpretation is that accountability measures could increase professors' administrative burden and grant more authority to non-academic staff.
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- 2021
22. Hardness of the Generalized Coloring Numbers
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Breen-McKay, Michael, Lavallee, Brian, and Sullivan, Blair D.
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Computer Science - Computational Complexity - Abstract
The generalized coloring numbers of Kierstead and Yang (Order 2003) offer an algorithmically-useful characterization of graph classes with bounded expansion. In this work, we consider the hardness and approximability of these parameters. First, we complete the work of Grohe et al. (WG 2015) by showing that computing the weak 2-coloring number is NP-hard. Our approach further establishes that determining if a graph has weak $r$-coloring number at most $k$ is para-NP-hard when parameterized by $k$ for all $r \geq 2$. We adapt this to determining if a graph has $r$-coloring number at most $k$ as well, proving para-NP-hardness for all $r \geq 2$. Para-NP-hardness implies that no XP algorithm (runtime $O(n^{f(k)})$) exists for testing if a generalized coloring number is at most $k$. Moreover, there exists a constant $c$ such that it is NP-hard to approximate the generalized coloring numbers within a factor of $c$. To complement these results, we give an approximation algorithm for the generalized coloring numbers, improving both the runtime and approximation factor of the existing approach of Dvo\v{r}\'{a}k (EuJC 2013). We prove that greedily ordering vertices with small estimated backconnectivity achieves a $(k-1)^{r-1}$-approximation for the $r$-coloring number and an $O(k^{r-1})$-approximation for the weak $r$-coloring number., Comment: 17 pages, 4 figures
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- 2021
23. Teachers' Indicators Used to Describe Professional Well-Being
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Stoloff, Sacha, Boulanger, Maude, Lavallée, Élisabeth, and Glaude-Roy, Julien
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The teaching profession has been studied and discussed from a problem-oriented point of view and cultivated by a problem-oriented scientific tradition. Years of research have enabled a better understanding of difficult teaching conditions and teachers' ill-being; an ideological and scientific shift, however, appears necessary to enrich and broaden our present knowledge. One particular question arises: which determinants optimize teachers' professional well-being? In response, our study seeks to identify indicators that allow teachers to create, maintain or restore a state of professional well-being. Our research objective thus aims to describe teachers' indicators regarding the "optimal functioning" that characterizes professional well-being (Seligman, 2011). The research protocol targets physical education teachers insofar as they are now recognized as leaders and models for promoting healthy lifestyles in schools and communities (MEQ, 2001). The methodology involved 5 focus groups composed of 37 teachers from 7 regions of Quebec. As the findings indicate, this approach allowed us to paint an integrative portrait of teachers' indicators relative to professional well-being. Two categories have proved effective in terms of professional well-being: the first is Self and includes 4 variables: meaning, positive emotions, engagement and vitality; the second is Others and includes 3 sub-categories: students, colleagues and school administration. The sub-categories comprise 6 variables divided as follows: positive relationships, learning, collaboration, transfer (specifically for the two first sub-categories), followed by vision and valorization for the third sub-category.
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- 2020
24. Damage amplification during repetitive seismic waves in mechanically loaded rocks
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Lamur, Anthony, Kendrick, Jackie E., Schaefer, Lauren N., Lavallée, Yan, and Kennedy, Ben M.
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- 2023
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25. Value-based comparison of ambulatory children with respiratory diseases in an emergency department and a walk-in clinic: a retrospective cohort study in Québec, Canada
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Denis Talbot, Patrick Archambault, Jason Robert Guertin, Lynne Moore, Simon Berthelot, Sébastien Blais, Narcisse Singbo, David Simonyan, Pascale Olivier, Philippe Lachapelle, Tania Marx, Jeanne Lavallée, Nawid Zada, Shaghayegh Shahrigharahkoshan, Benoit Huard, Myriam Mallet, Mélanie Létourneau, and Michel Lafrenière
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Medicine - Abstract
Objective To compare health outcomes and costs given in the emergency department (ED) and walk-in clinics for ambulatory children presenting with acute respiratory diseases.Design A retrospective cohort study.Setting This study was conducted from April 2016 to March 2017 in one ED and one walk-in clinic. The ED is a paediatric tertiary care centre, and the clinic has access to lab tests and X-rays.Participants Inclusion criteria were children: (1) aged from 2 to 17 years old and (2) discharged home with a diagnosis of upper respiratory tract infection (URTI), pneumonia or acute asthma.Main outcome measures The primary outcome measure was the proportion of patients returning to any ED or clinic within 3 and 7 days of the index visit. The secondary outcome measures were the mean cost of care estimated using time-driven activity-based costing and the incidence of antibiotic prescription for URTI patients.Results We included 532 children seen in the ED and 201 seen in the walk-in clinic. The incidence of return visits at 3 and 7 days was 20.7% and 27.3% in the ED vs 6.5% and 11.4% in the clinic (adjusted relative risk at 3 days (aRR) (95% CI) 3.17 (1.77 to 5.66) and aRR at 7 days 2.24 (1.46 to 3.44)). The mean cost (95% CI) of care (CAD) at the index visit was $C96.68 (92.62 to 100.74) in the ED vs $C48.82 (45.47 to 52.16) in the clinic (mean difference (95% CI): 46.15 (41.29 to 51.02)). Antibiotic prescription for URTI was less common in the ED than in the clinic (1.5% vs 16.4%; aRR 0.10 (95% CI 0.03 to 0.32)).Conclusions The incidence of return visits and cost of care were significantly higher in the ED, while antibiotic use for URTI was more frequent in the walk-in clinic. These data may help determine which setting offers the highest value to ambulatory children with acute respiratory conditions.
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- 2024
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26. Information-based rhythmic transcranial magnetic stimulation to accelerate learning during auditory working memory training: a proof-of-concept study
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Heather T. Whittaker, Lina Khayyat, Jessica Fortier-Lavallée, Megan Laverdière, Carole Bélanger, Robert J. Zatorre, and Philippe Albouy
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TMS ,cognition ,memory ,EEG ,theta oscillations ,fronto-parietal network ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
IntroductionRhythmic transcranial magnetic stimulation (rhTMS) has been shown to enhance auditory working memory manipulation, specifically by boosting theta oscillatory power in the dorsal auditory pathway during task performance. It remains unclear whether these enhancements (i) persist beyond the period of stimulation, (ii) if they can accelerate learning and (iii) if they would accumulate over several days of stimulation. In the present study, we investigated the lasting behavioral and electrophysiological effects of applying rhTMS over the left intraparietal sulcus (IPS) throughout the course of seven sessions of cognitive training on an auditory working memory task.MethodsA limited sample of 14 neurologically healthy participants took part in the training protocol with an auditory working memory task while being stimulated with either theta (5 Hz) rhTMS or sham TMS. Electroencephalography (EEG) was recorded before, throughout five training sessions and after the end of training to assess to effects of rhTMS on behavioral performance and on oscillatory entrainment of the dorsal auditory network.ResultsWe show that this combined approach enhances theta oscillatory activity within the fronto-parietal network and causes improvements in auditoryworking memory performance. We show that compared to individuals who received sham stimulation, cognitive training can be accelerated when combined with optimized rhTMS, and that task performance benefits can outlast the training period by ∼ 3 days. Furthermore, we show that there is increased theta oscillatory power within the recruited dorsal auditory network during training, and that sustained EEG changes can be observed ∼ 3 days following stimulation.DiscussionThe present study, while underpowered for definitive statistical analyses, serves to improve our understanding of the causal dynamic interactions supporting auditory working memory. Our results constitute an important proof of concept for the potential translational impact of non-invasive brain stimulation protocols and provide preliminary data for developing optimized rhTMS and training protocols that could be implemented in clinical populations.
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- 2024
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27. Polyphosphate kinase regulates LPS structure and polymyxin resistance during starvation in E. coli.
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Kanchi Baijal, Iryna Abramchuk, Carmen M Herrera, Thien-Fah Mah, M Stephen Trent, Mathieu Lavallée-Adam, and Michael Downey
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Biology (General) ,QH301-705.5 - Abstract
Polyphosphates (polyP) are chains of inorganic phosphates that can reach over 1,000 residues in length. In Escherichia coli, polyP is produced by the polyP kinase (PPK) and is thought to play a protective role during the response to cellular stress. However, the molecular pathways impacted by PPK activity and polyP accumulation remain poorly characterized. In this work, we used label-free mass spectrometry to study the response of bacteria that cannot produce polyP (Δppk) during starvation to identify novel pathways regulated by PPK. In response to starvation, we found 92 proteins significantly differentially expressed between wild-type and Δppk mutant cells. Wild-type cells were enriched for proteins related to amino acid biosynthesis and transport, while Δppk mutants were enriched for proteins related to translation and ribosome biogenesis, suggesting that without PPK, cells remain inappropriately primed for growth even in the absence of the required building blocks. From our data set, we were particularly interested in Arn and EptA proteins, which were down-regulated in Δppk mutants compared to wild-type controls, because they play a role in lipid A modifications linked to polymyxin resistance. Using western blotting, we confirm differential expression of these and related proteins in K-12 strains and a uropathogenic isolate, and provide evidence that this mis-regulation in Δppk cells stems from a failure to induce the BasRS two-component system during starvation. We also show that Δppk mutants unable to up-regulate Arn and EptA expression lack the respective L-Ara4N and pEtN modifications on lipid A. In line with this observation, loss of ppk restores polymyxin sensitivity in resistant strains carrying a constitutively active basR allele. Overall, we show a new role for PPK in lipid A modification during starvation and provide a rationale for targeting PPK to sensitize bacteria towards polymyxin treatment. We further anticipate that our proteomics work will provide an important resource for researchers interested in the diverse pathways impacted by PPK.
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- 2024
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28. Introducing OpenMP Tasks into the HYDRO Benchmark
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Gaidamour, Jérémie, Lecas, Dimitri, and Lavallée, Pierre-François
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Computer Science - Distributed, Parallel, and Cluster Computing - Abstract
The HYDRO mini-application has been successfully used as a research vehicle in previous PRACE projects [6]. In this paper, we evaluate the benefits of the tasking model introduced in recent OpenMP standards [9]. We have developed a new version of HYDRO using the concept of OpenMP tasks and this implementation is compared to already existing and optimized OpenMP versions of HYDRO.
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- 2021
29. Performance of an Enhanced Afterloader with Electromagnetic Tracking Capabilities for Channel Reconstruction and Error Detection
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Tho, Daline, Lavallée, Marie-Claude, and Beaulieu, Luc
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Physics - Medical Physics - Abstract
The reconstruction and error detection performance of a Flexitron research unit equipped with a special check-cable in which is integrated an EM sensor (NDI Aurora V3) that enables tracking and reconstruction capability was assessed. Reconstructions of a 24 cm long catheter were performed using two methods: continuous fixed speed check cable backward stepping and stepping through each dwell position every 1mm. The ability of the system to differentiate between two closely located (parallel) catheters was investigated by connecting catheters to the afterloader and moving it from its axis with an increment of 1mm. A robotic arm was used to move the catheter between each reconstruction. Reconstructions were obtained with a locally weighted scatter-plot smoothing algorithm. To quantify the reconstruction accuracy, distances between two catheters were computed along the reconstruction track with a 5mm step. Reconstructions of curve catheter paths were assessed through parallel and perpendicular phantom configuration to the EM field generator. Indexer length and lateral error were simulated and ROC analysis was made. Using a 50cm/s check cable speed does not allow accurate reconstruction. A slower check cable speed results in better reconstruction performance and smaller standard deviations. The optimum operating distance from the field generator (50-300mm) resulted in a lower absolute mean deviation from the expected value (0.2pm0.1mm) versus being positioned on the edge of the electromagnetic sensitive detection volume (0.6pm0.3mm). Reconstructions of curved and circular paths with a check cable speed under 5cm/s gave a 0.8pm0.5mm error, or better. All indexer and lateral shifts of 1mm were detected with a check cable speed of 2.5cm/s or under. A speed under 5cm/s is recommended for straight and curved catheter reconstructions. The check cable can also be used to detect common shift errors.
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- 2021
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30. A value-based comparison of the management of respiratory diseases in walk-in clinics and emergency departments
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Marx, Tania, Moore, Lynne, Talbot, Denis, Guertin, Jason R., Lachapelle, Philippe, Blais, Sébastien, Singbo, Narcisse, Simonyan, David, Lavallée, Jeanne, Zada, Nawid, Shahrigharahkoshan, Shaghayegh, Huard, Benoit, Olivier, Pascale, Mallet, Myriam, Létourneau, Mélanie, Lafrenière, Michel, Archambault, Patrick M., and Berthelot, Simon
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- 2023
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31. The State of Current Knowledge on the Cultural Formulation Interview: A Scoping Review
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Jones-Lavallée, Ahisha, Bernard, Gabriel, Taing, Jennifer, and Leanza, Yvan
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- 2023
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32. Barriers and facilitators to participation in exercise prehabilitation before cancer surgery for older adults with frailty: a qualitative study
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Keely Barnes, Emily Hladkowicz, Kristin Dorrance, Gregory L. Bryson, Alan J. Forster, Sylvain Gagné, Allen Huang, Manoj M. Lalu, Luke T. Lavallée, Chelsey Saunders, Hussein Moloo, Julie Nantel, Barbara Power, Celena Scheede-Bergdahl, Monica Taljaard, Carl van Walraven, Colin J. L. McCartney, and Daniel I. McIsaac
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Prehabilitation ,Frailty ,Qualitative methods ,Geriatrics ,RC952-954.6 - Abstract
Abstract Background Older adults with frailty are at an increased risk of adverse outcomes after surgery. Exercise before surgery (exercise prehabilitation) may reduce adverse events and improve recovery after surgery. However, adherence with exercise therapy is often low, especially in older populations. The purpose of this study was to qualitatively assess the barriers and facilitators to participating in exercise prehabilitation from the perspective of older people with frailty participating in the intervention arm of a randomized trial. Methods This was a research ethics approved, nested descriptive qualitative study within a randomized controlled trial of home-based exercise prehabilitation vs. standard care with older patients (≥ 60 years) having elective cancer surgery, and who were living with frailty (Clinical Frailty Scale ≥ 4). The intervention was a home-based prehabilitation program for at least 3 weeks before surgery that involved aerobic activity, strength and stretching, and nutritional advice. After completing the prehabilitation program, participants were asked to partake in a semi-structured interview informed by the Theoretical Domains Framework (TDF). Qualitative analysis was guided by the TDF. Results Fifteen qualitative interviews were completed. Facilitators included: 1) the program being manageable and suitable to older adults with frailty, 2) adequate resources to support engagement, 3) support from others, 4) a sense of control, intrinsic value, noticing progress and improving health outcomes and 5) the program was enjoyable and facilitated by previous experience. Barriers included: 1) pre-existing conditions, fatigue and baseline fitness, 2) weather, and 3) guilt and frustration when unable to exercise. A need for individualization and variety was offered as a suggestion by participants and was therefore described as both a barrier and facilitator. Conclusions Home-based exercise prehabilitation is feasible and acceptable to older people with frailty preparing for cancer surgery. Participants identified that a home-based program was manageable, easy to follow with helpful resources, included valuable support from the research team, and they reported self-perceived health benefits and a sense of control over their health. Future studies and implementation should consider increased personalization based on health and fitness, psychosocial support and modifications to aerobic exercises in response to adverse weather conditions.
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- 2023
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33. Prevalence and geographic distribution of Echinococcus genus in wild canids in southern Québec, Canada.
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Ève-Marie Lavallée-Bourget, Christopher Fernandez-Prada, Ariane Massé, Patricia Turgeon, and Julie Arsenault
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Medicine ,Science - Abstract
Echinococcus spp. is an emerging zoonotic parasite of high concern. In Canada, an increase in the number of human and animal cases diagnosed has been reported, but information regarding the parasite's distribution in wildlife reservoir remains limited. A cross-sectional study was conducted to estimate the prevalence of wild canids infected with Echinococcus spp. and Echinococcus multilocularis in areas surrounding populated zones in Québec (Canada); to investigate the presence of areas at higher risk of infection; to evaluate potential risk factors of the infection; and as a secondary objective, to compare coproscopy and RT-PCR diagnostic tests for Taenia spp. and Echinococcus identification. From October 2020 to March 2021, fecal samples were collected from 423 coyotes (Canis latrans) and 284 red foxes (Vulpes vulpes) trapped in 12 administrative regions. Real-time PCR for molecular detection of genus Echinococcus spp. and species-specific Echinococcus multilocularis were performed. A total of 38 positive cases of Echinococcus spp., of which 25 were identified as E. multilocularis, were detected. Two high-risk areas of infection were identified. The prevalence of Echinococcus spp. was 22.7% (95% CI 11.5-37.8%) in the Montérégie centered high-risk area, 26.5% (95% CI 12.9-44.4%) in the Bas-St-Laurent high-risk area, and 3.0% (95%CI 1.8-4.7%) outside those areas. For E. multilocularis, a prevalence of 20.5% (95% CI 9.8-35.3%) was estimated in the high-risk area centered in Montérégie compared to 2.4% (95% CI 1.4-3.9%) outside. Logistic regression did not show any association of infection status with species, sex, or geolocation of capture (p > 0.05). This study shows the circulation of Echinococcus in a wildlife cycle in 9/12 administrative regions of Québec.
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- 2024
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34. P116: A clinical algorithm to guide mainstreaming in pediatric oncology in Quebec
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Leora Witkowski, Laura Palma, Evan Weber, Alexandre Rouette, Loubna Jouan, Andrea Liliam Gomez Corredor, Lara Reichman, Thai-Hoa Tran, Sonia Cellot, William Foulkes, Anne-Marie Laberge, Vincent-Philippe Lavallée, and Catherine Goudie
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Genetics ,QH426-470 ,Medicine - Published
- 2024
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35. Advancing early relational health: a collaborative exploration of a research agenda
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Dani Dumitriu, Andréane Lavallée, Jessica L. Riggs, Cynthia A. Frosch, Tyson V. Barker, Debra L. Best, Brenda Blasingame, Jessica Bushar, Dominique Charlot-Swilley, Elizabeth Erickson, Morgan A. Finkel, Bryn Fortune, Leah Gillen, Marty Martinez, Usha Ramachandran, Lee M. Sanders, David W. Willis, and Nikki Shearman
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pediatrics ,nurture ,connection ,parents ,caregivers ,centrality of relationships ,Pediatrics ,RJ1-570 - Abstract
Here, we introduce the Early Relational Health (ERH) Learning Community's bold, large-scale, collaborative, data-driven and practice-informed research agenda focused on furthering our mechanistic understanding of ERH and identifying feasible and effective practices for making ERH promotion a routine and integrated component of pediatric primary care. The ERH Learning Community, formed by a team of parent/caregiver leaders, pediatric care clinicians, researchers, and early childhood development specialists, is a workgroup of Nurture Connection—a hub geared toward promoting ERH, i.e., the positive and nurturing relationship between young children and their parent(s)/caregiver(s), in families and communities nationwide. In response to the current child mental health crisis and the American Academy of Pediatrics (AAP) policy statement promoting ERH, the ERH Learning Community held an in-person meeting at the AAP national headquarters in December 2022 where members collaboratively designed an integrated research agenda to advance ERH. This agenda weaves together community partners, clinicians, and academics, melding the principles of participatory engagement and human-centered design, such as early engagement, co-design, iterative feedback, and cultural humility. Here, we present gaps in the ERH literature that prompted this initiative and the co-design activity that led to this novel and iterative community-focused research agenda, with parents/caregivers at the core, and in close collaboration with pediatric clinicians for real-world promotion of ERH in the pediatric primary care setting.
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- 2023
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36. Estimation of the shear strength of heterogeneous granular soils with matrix
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Kouakou, N., Cuisinier, O., Masrouri, F., Lavallée, E., and Borgne, T. Le
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Physics - Geophysics - Abstract
The determination of the mechanical properties of soils containing particles larger than the allowable size by standard laboratory equipment is problematic. It is indeed necessary to eliminate the coarsest fraction to carry out the tests, which poses a problem of representativeness of the results at the scale of the structure. Parallel gradation and scalping methods are presented as a means of estimating the shear strength of heterogeneous granular soils from tests on their finer fraction. This study focuses on the effect of fines content on the estimation by these methods, which is not well known. The results showed that the parallel gradation method can predict the angle of friction of the initial material despite a high percentage of fines. However, the cohesion of the initial material was overestimated. As for the scalping method proposed by Fragaszy et al., the higher fines content in the modelled material resulted in an overestimation of the cohesion and an underestimation of the friction angle of the initial material., Comment: in French. The XVII European Conference on Soil Mechanics and Geotechnical Engineering, Sep 2019, Reykjavik, Iceland
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- 2019
37. Estimation of the shear strength of a coarse soil with high fines content by parallel gradation method
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Kouakou, N'Guessan, Cuisinier, Olivier, Masrouri, Farimah, Lavallée, Emmanuel, and Borgne, Tangi Le
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Physics - Geophysics - Abstract
The determination of the mechanical properties of soils containing particles larger than the allowable size of standard laboratory equipments is complex. It is indeed necessary to remove the coarsest fraction to carry out the tests. This scalping poses a problem of reliability of the results at the scale of the structure. Parallel gradation is the method commonly used for estimating the shear strength of heterogeneous granular soils from tests on their finer fraction. However, the effect of high fines content on the estimation of shear strength by this method is not well understood. The results of this study showed that the parallel gradation method could predict the friction angle of the initial soil with high fines content when the modelled soil had a similar skeleton as the initial soil. However, the cohesion of the initial soil was overestimated.
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- 2019
38. A population‐based study of factors associated with systemic treatment in advanced prostate cancer decedents
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Jennifer Leigh, Danial Qureshi, Ewa Sucha, Roshanak Mahdavi, Igal Kushnir, Luke T. Lavallée, Dominick Bosse, Colleen Webber, Peter Tanuseputro, and Michael Ong
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decedent ,life‐prolonging therapy ,prostate cancer ,regional cancer center ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Introduction Life‐prolonging therapies (LPTs) are rapidly evolving for the treatment of advanced prostate cancer, although factors associated with real‐world uptake are not well characterized. Methods In this cohort of prostate‐cancer decedents, we analyzed factors associated with LPT access. Population‐level databases from Ontario, Canada identified patients 65 years or older with prostate cancer receiving androgen deprivation therapy and who died of prostate cancer between 2013 and 2017. Univariate and multivariable analyses assessed the association between baseline characteristics and receipt of LPT in the 2 years prior to death. Results Of 3575 patients who died of prostate cancer, 40.4% (n = 1443) received LPT, which comprised abiraterone (66.3%), docetaxel (50.3%), enzalutamide (17.2%), radium‐223 (10.0%), and/or cabazitaxel (3.5%). Use of LPT increased by year of death (2013: 22.7%, 2014: 31.8%, 2015: 41.8%, 2016: 49.1%, and 2017: 57.9%, p
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- 2023
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39. Identifying barriers and facilitators to routine preoperative frailty assessment: a qualitative interview study
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Hladkowicz, Emily, Dorrance, Kristin, Bryson, Gregory L., Forster, Alan, Gagne, Sylvain, Huang, Allen, Lalu, Manoj M., Lavallée, Luke T., Moloo, Husein, Squires, Janet, and McIsaac, Daniel I.
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- 2022
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40. International trade and face-to-face diplomacy
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Lavallée, Emmanuelle and Lochard, Julie
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- 2022
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41. Parent-Infant Interventions to Promote Parental Sensitivity during NICU Hospitalization: Systematic Review and Meta-Analysis
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Lavallée, Andréane, De Clifford-Faugère, Gwenaëlle, Ballard, Ariane, and Aita, Marilyn
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This systematic review and meta-analysis examined the effectiveness of parent-infant interventions for parents of preterm infants on parental sensitivity compared to standard care or active comparators. This review follows the PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analyses) guidelines and was prospectively registered in the International Prospective Register of Systematic Reviews (PROSPERO; registration ID: CRD42016047083). Database searches were performed from inception to 2020 to identify eligible randomized controlled trials. Two review authors independently selected studies, extracted data, and assessed the risk of bias using the Cochrane risk of bias assessment tool and quality of evidence using the Grades of Recommendation, Assessment, Development and Evaluation (GRADE) guidelines. A total of 19 studies (n = 2,111 participants) were included and 14 were suitable to be pooled in our primary outcome meta-analysis. Results show no significant effect of parent-infant interventions over standard care or basic educational programs, on parental sensitivity. Results may not necessarily be due to the ineffectiveness of the interventions but rather due to implementation failure or high risk of bias of included studies.
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- 2021
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42. How do people with antisocial personality disorder with or without psychopathic personality disorder activate and regulate emotions? Neurovegetative responses during an autobiographical task
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Fanny Degouis, Thierry Pham, Xavier Saloppé, Marie-Charlotte Gandolphe, Audrey Lavallée, Laurent Ott, Ann Darsonville, and Jean-Louis Nandrino
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Psychiatry ,RC435-571 ,Psychology ,BF1-990 - Abstract
People with antisocial personality disorder (ASPD-nonPPD) are described as insensitive to others and as relentlessly pursuing their goals. A severe form of antisociality is observed in psychopathic personality disorder (ASPD-PPD). In the spectrum of emotional reactivity, people with ASPD-nonPPD present more emotional dysregulation, whereas people with ASPD-PPD exhibit a reduced or nonexistent emotional response. To personally engage people with ASPD-nonPPD and ASPD-PPD, we used emotionally charged autobiographical stimuli, specifically their self-defining memories (SDMs). As these participants exhibit high control over voluntary responses, we measured neurophysiological indicators (heart rate variability (HRV) and electrodermal activity (EDA)). In the resting task and the SDM task, people with ASPD-PPD had significantly higher HRV, suggesting higher emotion regulation abilities. Conversely, the EDA of people with ASPD-nonPPD and ASPD-PPD reflects less activation during the SDM task than when resting. We suggest that people with ASPD-PPD are more adaptive to stimuli that provide less emotional activation. Furthermore, the correlation analysis results suggested that the higher people with ASPD-PPD score on Factor 1 of the Psychopathy Checklist-Revised (PCL-R), the less emotional activation they exhibit. This low activation (EDA) associated with good emotion regulation abilities (HRV) is thought to be the signature of psychopathy.
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- 2023
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43. Regard sur la pratique ergothérapique en déficience intellectuelle au Québec : une enquête exploratoire
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Sarah Rahimaly, Camille Gauthier-Boudreault, Emmanuelle Dubé-Bergeron, Gabriella Gagné, Aurélie Lavallée, Anne-Sara Mercier, and Mélanie Couture
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Ergothérapie, Déficience intellectuelle, Motif de référence, Outil d’évaluation, Méthode d’intervention ,Occupational therapy, Intellectual disability, Reason for referral, Assessment tool, Method of intervention ,Other systems of medicine ,RZ201-999 - Abstract
Introduction : Au Québec, le développement de la pratique de l’ergothérapie en déficience intellectuelle est en pleine émergence au regard du nombre d’ergothérapeutes engagés dans l’offre de services destinée à cette clientèle. Néanmoins, les écrits et les outils liés à l’ergothérapie au Québec dans ce domaine restent limités pour soutenir les ergothérapeutes dans l’accomplissement de leur plein potentiel professionnel. Objectif : Cette étude vise à brosser le portrait de la pratique de l’ergothérapie auprès des personnes ayant une déficience intellectuelle au Québec. Méthode : L’enquête utilisant un questionnaire en ligne, diffusé aux ergothérapeutes par le biais de leur association professionnelle, comprenait des questions liées aux motifs de référence en ergothérapie, aux stratégies d’évaluation et aux méthodes d’intervention utilisées, ainsi qu’aux défis rencontrés dans la pratique. Résultats : Un total de 53 ergothérapeutes a rempli le questionnaire. Les participants travaillent dans divers contextes de pratique et répondent à une variété de demandes de consultation, principalement en lien avec le soutien à l’autonomie. Les ergothérapeutes utilisent plusieurs outils d’évaluation, mais notent un défi concernant la standardisation et l’utilisation des valeurs normatives. Les ergothérapeutes agissent majoritairement à titre de consultants et constatent un accès limité à des formations pour soutenir leur développement professionnel. Conclusion : Bien que les rôles de l’ergothérapeute soient multiples, il semble qu’une faible implication de ces professionnels soit observée dans plusieurs sphères de vie des personnes ayant une déficience intellectuelle. Divers champs d’exercices de l’ergothérapie resteraient à développer au Québec, notamment dans le soutien aux transitions de vie, auprès des personnes présentant des incapacités significatives, et dans l’inclusion socioprofessionnelle. ----- Introduction: In Quebec, the occupational therapy practice in intellectual disability is in full development with regard to the number of occupational therapists involved in services intended for people with an intellectual disability. Nevertheless, scientific literature and professional tools related to occupational therapy specific to this context remains limited to support occupational therapist in achieving their full potential. Aim: This study aims to explore the occupational therapy practice amongst people with an intellectual disability in Quebec. Method: This survey using an online questionnaire, distributed to occupational therapists through their professional association, included closed and open-ended questions related to reasons for referral in occupational therapy services, currently used assessment strategies and intervention methods, as well as challenges encountered by occupational therapists. Results: A total of 53 occupational therapists completed the survey. Participants work in many practice settings and respond to a variety of consultation requests, primarily related to support of autonomy in daily activities. Occupational therapists use several assessment tools, but identify a challenge regarding the standardization and the use of normative values. Occupational therapists mostly act as consultants and report limited access to training supporting their professional development. Conclusion: Although the roles of occupational therapist are multiple, a limited involvement of these professionals is noted in several life domains of people with an intellectual disability. Various fields of expertise still need to be developed in Quebec, notably in the support during life transitions, in interventions with people with significant disabilities, and in socioprofessional inclusion.
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- 2023
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44. Bypass grafting to the third segment of the vertebral artery for symptomatic extensive vertebrobasilar atherosclerotic disease
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Quentin Pellenc, MD, PhD, Régis Renard, MD, Augustin Gaudemer, MD, Pierre Amarenco, MD, and Philippa Lavallée, MD
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Bypass grafting ,Open surgical repair ,Posterior circulation strokes ,Vertebrobasilar insufficiency ,Surgery ,RD1-811 ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Symptomatic vertebrobasilar atherosclerotic disease is rarely encountered but represents a high-risk factor for recurrent transient ischemic attack or stroke. Posterior strokes are usually associated with embolism or hemodynamic impairment. Extensive disease involving the V3 and V4 segments of the vertebral artery (VA) remains infrequent, and optimal management is limited owing to the infrequency of this disease. We illustrate the case of a 65-year-old man who presented with recurrent transient episodes of dizziness with acute onset of instability, nausea, and left visual blurring. Magnetic resonance imaging findings of the head were normal, and computed tomography angiography revealed severe atherosclerotic disease of both VAs, with proximal occlusion of the right VA and multiple tight stenoses of the left VA at the V1 and V4 segments. Duplex ultrasound found markedly reduced anterograde flow in the VAs and basilar arteries and nonsignificant stenosis of the internal carotid arteries. Optimal medical treatment led to a decrease of transient symptoms. However, the patient developed a cerebellar infarction in the left posteroinferior cerebellar artery territory with left VA V4 segment occlusion. Surgical revascularization of the right VA was decided by the multidisciplinary team. Through an anterolateral approach of the right VA V3 segment, revascularization was performed using a common carotid artery-to-right VA bypass using a reversed saphenous vein graft. The patient fully recovered and was free of symptoms during the next 14 months of follow-up. In the case of extensive VA occlusive disease, surgical reconstruction of the distal VA using a bypass from the common carotid artery represents an option to improve hemodynamics and/or eliminate an embolic source of posterior stroke on a case-by-case basis.
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- 2023
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45. Approximating Vertex Cover using Structural Rounding
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Lavallee, Brian, Russell, Hayley, Sullivan, Blair D., and van der Poel, Andrew
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Computer Science - Data Structures and Algorithms - Abstract
In this work, we provide the first practical evaluation of the structural rounding framework for approximation algorithms. Structural rounding works by first editing to a well-structured class, efficiently solving the edited instance, and "lifting" the partial solution to recover an approximation on the input. We focus on the well-studied Vertex Cover problem, and edit to the class of bipartite graphs (where Vertex Cover has an exact polynomial time algorithm). In addition to the naive lifting strategy for Vertex Cover described by Demaine et al., we introduce a suite of new lifting strategies and measure their effectiveness on a large corpus of synthetic graphs. We find that in this setting, structural rounding significantly outperforms standard 2-approximations. Further, simpler lifting strategies are extremely competitive with the more sophisticated approaches. The implementations are available as an open-source Python package, and all experiments are replicable.
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- 2019
46. A stochastic individual based model for the growth of a stand of Japanese knotweed including mowing as a management technique
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Lavallée, François, Smadi, Charline, Alvarez, Isabelle, Reineking, Björn, Martin, François-Marie, Dommanget, Fanny, and Martin, Sophie
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Quantitative Biology - Populations and Evolution - Abstract
Invasive alien species are a growing threat for environment and health. They also have a major economic impact, as they can damage many infrastructures. The Japanese knotweed (Fallopia japonica), present in North America, Northern and Central Europe as well as in Australia and New Zealand, is listed by the World Conservation Union as one of the world's worst invasive species. So far, most models have dealt with how the invasion spreads without management. This paper aims at providing a model able to study and predict the dynamics of a stand of Japanese knotweed taking into account mowing as a management technique. The model we propose is stochastic and individual-based, which allows us taking into account the behaviour of individuals depending on their size and location, as well as individual stochasticity. We set plant dynamics parameters thanks to a calibration with field data, and study the influence of the initial population size, the mean number of mowing events a year and the management project duration on mean area and mean number of crowns of stands. In particular, our results provide the sets of parameters for which it is possible to obtain the stand eradication, and the minimal duration of the management project necessary to achieve this latter.
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- 2019
47. Influence of clipping on bacterial contamination of canine arthrocentesis sites before and after skin preparation
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Lavallée, Justin M, Shmon, Cindy, Beaufrère, Hugues, Chirino‐Trejo, Manuel, and Linn, Kathleen
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Veterinary Sciences ,Agricultural ,Veterinary and Food Sciences ,Clinical Research ,Emerging Infectious Diseases ,Animals ,Anti-Infective Agents ,Local ,Arthrocentesis ,Bacteria ,Chlorhexidine ,Dog Diseases ,Dogs ,Preoperative Care ,Prospective Studies ,Skin ,Staphylococcus ,Surgical Wound Infection ,Veterinary sciences - Abstract
ObjectiveTo determine the influence of hair removal as part of the aseptic skin preparation of canine arthrocentesis sites and to characterize the bacterial flora remaining after aseptic skin preparation.Study designRandomized controlled trial.Study populationThirteen shorthaired beagle-cross dogs.MethodsA coin toss was used to randomly determine to have one carpus, elbow, tarsus, and stifle clipped. The contralateral side was left unclipped. Aseptic skin preparation was performed on all sites with 4% chlorhexidine followed by 70% isopropyl alcohol. The skin of each site was sampled for aerobic and anaerobic bacterial cultures before and after aseptic skin preparation. Bacterial cultures were submitted for laboratory testing to determine the colony-forming units (CFU) of bacteria and bacterial species isolated for each site.ResultsEach group (clipped and unclipped) included 52 sites. Aseptic skin preparation reduced bacterial CFU in both groups. There was no association between values for CFU per milliliter after skin preparation of dogs and side (P = .07), joint (P = .71), pre-aseptic skin preparation CFU (P = .94), or clipping (P = .42). Staphylococcus spp were the most common of the bacterial species cultured.ConclusionIn clean shorthaired dogs without visible evidence of dermatological disease, leaving arthrocentesis sites unclipped rather than performing traditional surgical clipping did not result in increased bacterial skin counts after aseptic skin preparation.Clinical significanceIn this study we did not find evidence to support that clipping of canine arthrocentesis sites is required for effective aseptic skin preparation. A prospective clinical trial is required to determine whether a change in practice would be associated with increased morbidity.
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- 2020
48. Damage amplification during repetitive seismic waves in mechanically loaded rocks
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Anthony Lamur, Jackie E. Kendrick, Lauren N. Schaefer, Yan Lavallée, and Ben M. Kennedy
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Medicine ,Science - Abstract
Abstract Cycles of stress build-up and release are inherent to tectonically active planets. Such stress oscillations impart strain and damage, prompting mechanically loaded rocks and materials to fail. Here, we investigate, under uniaxial conditions, damage accumulation and weakening caused by time-dependent creep (at 60, 65, and 70% of the rocks’ expected failure stress) and repeating stress oscillations (of ± 2.5, 5.0 or 7.5% of the creep load), simulating earthquakes at a shaking frequency of ~ 1.3 Hz in volcanic rocks. The results show that stress oscillations impart more damage than constant loads, occasionally prompting sample failure. The magnitudes of the creep stresses and stress oscillations correlate with the mechanical responses of our porphyritic andesites, implicating progressive microcracking as the cause of permanent inelastic strain. Microstructural investigation reveals longer fractures and higher fracture density in the post-experimental rock. We deconvolve the inelastic strain signal caused by creep deformation to quantify the amount of damage imparted by each individual oscillation event, showing that the magnitude of strain is generally largest with the first few oscillations; in instances where pre-existing damage and/or the oscillations’ amplitude favour the coalescence of micro-cracks towards system scale failure, the strain signal recorded shows a sharp increase as the number of oscillations increases, regardless of the creep condition. We conclude that repetitive stress oscillations during earthquakes can amplify the amount of damage in otherwise mechanically loaded materials, thus accentuating their weakening, a process that may affect natural or engineered structures. We specifically discuss volcanic scenarios without wholesale failure, where stress oscillations may generate damage, which could, for example, alter pore fluid pathways, modify stress distribution and affect future vulnerability to rupture and associated hazards.
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- 2023
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49. Combined PD-L1 and TIM3 blockade improves expansion of fit human CD8+ antigen-specific T cells for adoptive immunotherapy
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Shirin Lak, Valérie Janelle, Anissa Djedid, Gabrielle Boudreau, Ann Brasey, Véronique Lisi, Ali Smaani, Cédric Carli, Lambert Busque, Vincent-Philippe Lavallée, and Jean-Sébastien Delisle
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PD-1 ,TIM3 ,adoptive immunotherapy ,immune checkpoint ,T cell manufacturing ,single-cell RNA sequencing ,Genetics ,QH426-470 ,Cytology ,QH573-671 - Abstract
Antigen-specific T cell expansion ex vivo followed by adoptive transfer enables targeting of a multitude of microbial and cancer antigens. However, clinical-scale T cell expansion from rare precursors requires repeated stimulation, which may lead to T cell dysfunction and limited therapeutic potential. We used a clinically compliant protocol to expand Epstein-Barr virus (EBV) and Wilms tumor 1 (WT1) antigen-specific CD8+ T cells, and leveraged T cell exhaustion-associated inhibitory receptor blockade to improve T cell expansion. Several inhibitory receptors were expressed early by ex vivo-expanded antigen-specific CD8+ T cells, including PD-1 and TIM3, with co-expression matching evidence of T cell dysfunction as the cultures progressed. Introduction of anti-PD-L1 and anti-TIM3 blockade in combination (but not individually) to the culture led to markedly improved antigen-specific T cell expansion without inducing T cell dysfunction. Single-cell RNA sequencing (RNA-seq) and T cell receptor (TCR) repertoire profiling revealed that double blockade does not impart specific transcriptional programs in T cells or alterations in TCR repertoires. However, combined blockade may affect gene expression in a minority of clonotypes in a donor-specific fashion. We conclude that antigen-specific CD8+ T cell manufacturing can be improved by using TIM3 and PD-L1/PD-1 axis blockade in combination. This approach is readily applicable to several adoptive immunotherapy strategies.
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- 2022
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50. Environmental Investigation during Legionellosis Outbreak, Montérégie, Quebec, Canada, 2021
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Laura Atikessé, Nabila Kadaoui, Vincent Lavallée, Éric Levac, Marie St-Amour, and François Milord
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Legionella pneumophila ,legionellosis ,outbreak ,water cooling tower ,wind rose ,Canada ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
In August 2021, a legionellosis outbreak involving 7 persons occurred within a 500-meter radius in the Montérégie region of Québec, Canada. Near real-time modeling of wind direction along with epidemiologic and environmental investigations identified the possible source. Modeling wind direction could help identify likely Legionella pneumophila sources during legionellosis outbreaks.
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- 2022
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