43 results on '"Laura A. Díaz-Martínez"'
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2. Current Approaches for Integrating Responsible and Ethical Conduct of Research (RECR) Education into Course-based Undergraduate Research Experiences: A National Assessment
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Aimee Hernandez, Laura A. Díaz-Martínez, David Esparza, Jeffrey T. Olimpo, Stephanie Corral, Christina E. D’Arcy, Jay M. Bhatt, and Martina J. Rosenberg
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Universities ,Research ,05 social sciences ,050301 education ,06 humanities and the arts ,0603 philosophy, ethics and religion ,General Biochemistry, Genetics and Molecular Biology ,Article ,Education ,Undergraduate research ,Humans ,Engineering ethics ,060301 applied ethics ,Curriculum ,Student research ,Students ,0503 education ,Ethical code - Abstract
Course-based undergraduate research experiences (CUREs), which often engage students as early as freshman year, have become increasingly common in biology curricula. While many studies have highlighted the benefits of CUREs, little attention has been paid to responsible and ethical conduct of research (RECR) education in such contexts. Given this observation, we adopted a mixed methods approach to explore the extent to which RECR education is being implemented and assessed in biological sciences CUREs nationwide. Survey and semistructured interview data show a general awareness of the importance of incorporating RECR education into CUREs, with all respondents addressing at least one RECR topic in their courses. However, integration of RECR education within the CURE environment primarily focuses on the application of RECR during research practice, often takes the form of corrective measures, and appears to be rarely assessed. Participants reported lack of time and materials as the main barriers to purposeful inclusion of RECR education within their courses. These results underscore a need for the CURE community to develop resources and effective models to integrate RECR education into biology CUREs.
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- 2021
3. USP13 interacts with cohesin and regulates its ubiquitination in human cells
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Jung-Sik Kim, Bogdan Budnik, Xiaoyuan He, Todd Waldman, Cecil Han, William S. Lane, and Laura A. Díaz-Martínez
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0301 basic medicine ,cell division ,DNA Replication ,DNA Repair ,DNA repair ,Immunoprecipitation ,Chromosomal Proteins, Non-Histone ,ac-SMC3, acetylated-SMC3 ,cohesin ,Cell Cycle Proteins ,Biochemistry ,FSBP, FLAG-streptavidin-binding peptide ,ZnF, zinc finger domain ,genome structure ,03 medical and health sciences ,Chromosome Segregation ,Humans ,Protein Interaction Domains and Motifs ,Molecular Biology ,Mitosis ,mitosis ,030102 biochemistry & molecular biology ,Cohesin ,Chemistry ,Ubiquitin ,DNA replication ,Ubiquitination ,SBP, streptavidin binding peptide ,USP13 ,USP13, Ubiquitin-Specific Protease 13 ,Cell Biology ,Cell cycle ,HCT116 Cells ,Chromatin ,Cell biology ,Establishment of sister chromatid cohesion ,TBS, Tris-buffered saline ,030104 developmental biology ,deubiquitylation (deubiquitination) ,protein–protein interaction ,cell cycle ,Ubiquitin-Specific Proteases ,biological phenomena, cell phenomena, and immunity ,Research Article ,HeLa Cells - Abstract
Cohesin is a multiprotein ring complex that regulates 3D genome organization, sister chromatid cohesion, gene expression, and DNA repair. Cohesin is known to be ubiquitinated, although the mechanism, regulation, and effects of cohesin ubiquitination remain poorly defined. We previously used gene editing to introduce a dual epitope tag into the endogenous allele of each of 11 known components of cohesin in human HCT116 cells. Here we report that mass spectrometry analysis of dual-affinity purifications identified the USP13 deubiquitinase as a novel cohesin-interacting protein. Subsequent immunoprecipitation/Western blots confirmed the endogenous interaction in HCT116, 293T, HeLa, and RPE-hTERT cells; demonstrated that the interaction occurs specifically in the soluble nuclear fraction (not in the chromatin); requires the ubiquitin-binding domains (UBA1/2) of USP13; and occurs preferentially during DNA replication. Reciprocal dual-affinity purification of endogenous USP13 followed by mass spectrometry demonstrated that cohesin is its primary interactor in the nucleus. Ectopic expression and CRISPR knockout of USP13 showed that USP13 is paradoxically required for both deubiquitination and ubiquitination of cohesin subunits in human cells. USP13 was dispensable for sister chromatid cohesion in HCT116 and HeLa cells, whereas it was required for the dissociation of cohesin from chromatin as cells transit through mitosis. Together these results identify USP13 as a new cohesin-interacting protein that regulates the ubiquitination of cohesin and its cell cycle regulated interaction with chromatin.
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- 2020
4. Infusing Critical Conversations about Cultural Awareness, Identity, and Mental Health into a Research-Intensive Program for Hispanic/Latinx Undergraduates in STEM
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Laura A. Díaz-Martínez, Aimee Hernandez, Karina C. Canaba, and Jeffrey T. Olimpo
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Identity (social science) ,Psychology ,Mental health ,Social psychology ,Cultural competence - Published
- 2020
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5. Cohesin is dispensable for centromere cohesion in human cells.
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Laura A Díaz-Martínez, Juan F Giménez-Abián, and Duncan J Clarke
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Medicine ,Science - Abstract
Proper regulation of the cohesion at the centromeres of human chromosomes is essential for accurate genome transmission. Exactly how cohesion is maintained and is then dissolved in anaphase is not understood.We have investigated the role of the cohesin complex at centromeres in human cells both by depleting cohesin subunits using RNA interference and also by expressing a non-cleavable version of the Rad21 cohesin protein. Rad21 depletion results in aberrant anaphase, during which the sister chromatids separate and segregate in an asynchronous fashion. However, centromere cohesion was maintained before anaphase in Rad21-depleted cells, and the primary constrictions at centromeres were indistinguishable from those in control cells. Expression of non-cleavable Rad21 (NC-Rad21), in which the sites normally cleaved by separase are mutated, resulted in delayed sister chromatid resolution in prophase and prometaphase, and a blockage of chromosome arm separation in anaphase, but did not impede centromere separation.These data indicate that cohesin complexes are dispensable for sister cohesion in early mitosis, yet play an important part in the fidelity of sister separation and segregation during anaphase. Cleavage at the separase-sensitive sites of Rad21 is important for arm separation, but not for centromere separation.
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- 2007
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6. Needs and Opportunities for Ethics and Responsible Conduct of Research (E/RCR) integration in Course‐based Undergraduate Research Experiences: the ENCOUR Fellowship Program
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Laura A. Díaz-Martínez, Christina E. D’Arcy, and Jeffrey T. Olimpo
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Medical education ,Undergraduate research ,Genetics ,Psychology ,Molecular Biology ,Biochemistry ,Biotechnology ,Course (navigation) - Published
- 2020
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7. Graded requirement for the spliceosome in cell cycle progression
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Laura A. Díaz-Martínez, Zemfira N. Karamysheva, Hongtao Yu, and Ross Warrington
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G2 Phase ,Spliceosome ,DNA damage ,RNA Splicing ,Mitosis ,Cell Cycle Proteins ,Biology ,Report ,Gene duplication ,Gene expression ,Humans ,RNA, Messenger ,RNA, Small Interfering ,Molecular Biology ,Cell Cycle ,G1 Phase ,DNA ,Cell Biology ,Cell cycle ,Flow Cytometry ,Phenotype ,Cell biology ,Gene Expression Regulation ,RNA splicing ,Spliceosomes ,DNA Damage ,HeLa Cells ,Developmental Biology - Abstract
Genome stability is ensured by multiple surveillance mechanisms that monitor the duplication, segregation, and integrity of the genome throughout the cell cycle. Depletion of components of the spliceosome, a macromolecular machine essential for mRNA maturation and gene expression, has been associated with increased DNA damage and cell cycle defects. However, the specific role for the spliceosome in these processes has remained elusive, as different cell cycle defects have been reported depending on the specific spliceosome subunit depleted. Through a detailed cell cycle analysis after spliceosome depletion, we demonstrate that the spliceosome is required for progression through multiple phases of the cell cycle. Strikingly, the specific cell cycle phenotype observed after spliceosome depletion correlates with the extent of depletion. Partial depletion of a core spliceosome component results in defects at later stages of the cell cycle (G2 and mitosis), whereas a more complete depletion of the same component elicits an early cell cycle arrest in G1. We propose a quantitative model in which different functional dosages of the spliceosome are required for different cell cycle transitions.
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- 2015
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8. Responsible and ethical conduct of research (RECR) diagnostic survey using case scenarios from biology course-based undergraduate research experiences (CUREs)
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Elizabeth G. Monthofer, Jewel M. Ito, Samantha Battaglia, and Laura A. Diaz-Martinez
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course-based undergraduate research experiences (CUREs) ,ethical and responsible conduct of research ,responsible and ethical conduct of research education ,research ethics instruction ,Special aspects of education ,LC8-6691 ,Biology (General) ,QH301-705.5 - Abstract
ABSTRACTCourse-based undergraduate research experiences (CUREs) are increasingly becoming the first, and perhaps only, research experience for many biology students. Responsible and ethical conduct of research (RECR) is crucial for the integrity of scientific research and essential for students to have an understanding of the scientific process at any academic level. However, there is a current lack of RECR education in biology CUREs. To understand the level of RECR knowledge and skills in undergraduate students, we created a diagnostic survey that uses case scenarios designed to illustrate RECR issues in the CURE classroom. Analysis of students’ responses indicated that the overall percentage of students who are able to effectively use RECR terminology and identify the impact of RECR violations on science integrity and ultimately on society is low. Furthermore, some students equated RECR violations to academic dishonesty, indicating difficulties separating the research and academic aspects of CUREs. This diagnostic tool can aid instructors in identifying gaps in student RECR knowledge for the subsequent development of RECR educational interventions, particularly to ensure the integrity of the research performed in CURE settings.
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- 2023
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9. Integration of RCR and Ethics Education into Course-Based Undergraduate Research Experiences in the Biological Sciences: A Needed Discussion
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Laura A. Díaz-Martínez, Jeffrey T. Olimpo, Jay M. Bhatt, and Christina E. D’Arcy
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0301 basic medicine ,Knowledge management ,QH301-705.5 ,General Biochemistry, Genetics and Molecular Biology ,Education ,03 medical and health sciences ,scientific inquiry ,ComputingMilieux_COMPUTERSANDEDUCATION ,Medicine ,Biology (General) ,lcsh:QH301-705.5 ,Biological sciences ,Scientific enterprise ,Intersectionality ,lcsh:LC8-6691 ,responsible conduct of research ,lcsh:Special aspects of education ,LC8-6691 ,ComputingMilieux_THECOMPUTINGPROFESSION ,General Immunology and Microbiology ,business.industry ,4. Education ,05 social sciences ,Professional development ,050301 education ,Foundation (evidence) ,Cognition ,course-based undergraduate research experience ,ethics ,Special aspects of education ,scientific integrity ,030104 developmental biology ,lcsh:Biology (General) ,Undergraduate research ,Workforce ,Engineering ethics ,General Agricultural and Biological Sciences ,business ,0503 education ,Perspectives - Abstract
Course-based undergraduate research experiences (CUREs) have been identified as a promising vehicle to broaden novices’ participation in authentic scientific opportunities. While recent studies in the bioeducation literature have focused on the influence of CUREs on cognitive and non-cognitive student outcomes (e.g., attitudes and motivation, science process skills development), few investigations have examined the extent to which the contextual features inherent in such experiences affect students’ academic and professional growth. Central among these factors is that of ethics and the responsible conduct of research (RCR)—essential cornerstones of the scientific enterprise. In this article, we examine the intersectionality of ethics/RCR instruction within CURE contexts through a critical review of existing literature that details mechanisms for the integration of ethics/RCR education into undergraduate laboratory experiences in the science domains. Building upon this foundation, we propose a novel, evidence-based framework that seeks to illustrate posited interactions between core ethics/RCR principles and unique dimensions of CUREs. It is our intent that this framework will inform and encourage open dialogue around an often-overlooked aspect of CURE instruction—how to best prepare ethically responsible scholars for entrance into the global scientific workforce.
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- 2017
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10. Recommendations for Effective Integration of Ethics and Responsible Conduct of Research (E/RCR) Education into Course-Based Undergraduate Research Experiences: A Meeting Report
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Christiana E. D'Arcy, Martina J. Rosenberg, Patrick J. Killion, Kevin W. Floyd, Sara E. Brownell, Laura A. Díaz-Martínez, Jeffrey T. Olimpo, Mark A Yarborough, David Esparza, Jaclyn Madden, Ginger R. Fisher, Lisa A. Corwin, Kelly K. McDonald, William B. Davis, Patricia Marsteller, Jennifer Apodaca, Jay M. Bhatt, and Teresa Mayfield-Meyer
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Universities ,Guidelines as Topic ,Meeting Report ,0603 philosophy, ethics and religion ,General Biochemistry, Genetics and Molecular Biology ,Education ,Humans ,Learning ,Students ,Biological sciences ,Curriculum ,Ethics ,Scientific enterprise ,Research ,4. Education ,05 social sciences ,Professional development ,050301 education ,06 humanities and the arts ,Research opportunities ,Research process ,Scholarship ,Undergraduate research ,Engineering ethics ,Patient Safety ,060301 applied ethics ,Psychology ,0503 education - Abstract
Advancement of the scientific enterprise relies on individuals conducting research in an ethical and responsible manner. Educating emergent scholars in the principles of ethics/responsible conduct of research (E/RCR) is therefore critical to ensuring such advancement. The recent impetus to include authentic research opportunities as part of the undergraduate curriculum, via course-based undergraduate research experiences (CUREs), has been shown to increase cognitive and noncognitive student outcomes. Because of these important benefits, CUREs are becoming more common and often constitute the first research experience for many students. However, despite the importance of E/RCR in the research process, we know of few efforts to incorporate E/RCR education into CUREs. The Ethics Network for Course-based Opportunities in Undergraduate Research (ENCOUR) was created to address this concern and promote the integration of E/RCR within CUREs in the biological sciences and related disciplines. During the inaugural ENCOUR meeting, a four-pronged approach was used to develop guidelines for the effective integration of E/RCR in CUREs. This approach included: 1) defining appropriate student learning objectives; 2) identifying relevant curriculum; 3) identifying relevant assessments; and 4) defining key aspects of professional development for CURE facilitators. Meeting outcomes, including the aforementioned E/RCR guidelines, are described herein.
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- 2019
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11. Visualizing chromosome segregation in live cells
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Duncan J. Clarke and Laura A. Díaz-Martínez
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0301 basic medicine ,Green Fluorescent Proteins ,Aneuploidy ,Mitosis ,Antineoplastic Agents ,CHO Cells ,Cell Separation ,Biology ,Chromosomes, Artificial, Human ,Chromosome segregation ,03 medical and health sciences ,Cell Cycle News & Views ,0302 clinical medicine ,Cricetulus ,Cell Line, Tumor ,Chromosomal Instability ,Chromosome Segregation ,Cricetinae ,medicine ,Animals ,Humans ,Molecular Biology ,Genetics ,Cell Biology ,medicine.disease ,030104 developmental biology ,Securin ,030220 oncology & carcinogenesis ,Developmental Biology - Abstract
Most solid tumors are aneuploid, carrying an abnormal number of chromosomes, and they frequently missegregate whole chromosomes in a phenomenon termed chromosome instability (CIN). While CIN can be provoked through disruption of numerous mitotic pathways, it is not clear which of these mechanisms are most critical, or whether alternative mechanisms could also contribute significantly in vivo. One difficulty in determining the relative importance of candidate CIN regulators has been the lack of a straightforward, quantitative assay for CIN in live human cells: While gross mitotic abnormalities can be detected visually, moderate levels of CIN may not be obvious, and are thus problematic to measure. To address this issue, we have developed the first Human Artificial Chromosome (HAC)-based quantitative live-cell assay for mitotic chromosome segregation in human cells. We have produced U2OS-Phoenix cells carrying the alphoid(tetO)-HAC encoding copies of eGFP fused to the destruction box (DB) of anaphase promoting complex/cyclosome (APC/C) substrate hSecurin and sequences encoding the tetracycline repressor fused to mCherry (TetR-mCherry). Upon HAC missegregation, daughter cells that do not obtain a copy of the HAC are GFP negative in the subsequent interphase. The HAC can also be monitored live following the TetR-mCherry signal. U2OS-Phoenix cells show low inherent levels of CIN, which can be enhanced by agents that target mitotic progression through distinct mechanisms. This assay allows direct detection of CIN induced by clinically important agents without conspicuous mitotic defects, allowing us to score increased levels of CIN that fall below the threshold required for discernable morphological disruption.
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- 2016
12. Genomic heterogeneity meets cellular energetics: crosstalk between the mitochondria and the cell cycle
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Seham Z. Azzam, Madison C. Berger, Erica L. Herrera, and Laura A. Díaz-Martínez
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0301 basic medicine ,03 medical and health sciences ,Crosstalk (biology) ,030104 developmental biology ,Oncology ,Chemistry ,Mitochondrion ,Cell cycle ,Cellular energetics ,Cell biology - Published
- 2018
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13. Cohesin is needed for bipolar mitosis in human cells
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Katherine Furniss, Duncan J. Clarke, Juan F. Giménez-Abián, Pedro Esponda, Laura A. Díaz-Martínez, Nicole A. Beauchene, Comisión Nacional de Investigación Científica y Tecnológica (Chile), Ministerio de Ciencia e Innovación (España), University of Minnesota, Díaz-Martínez, Laura A. [0000-0002-7226-7068], Furniss, Katherine [0000-0003-2851-8306], Giménez-Abián, Juan F. [0000-0002-9220-286X], Clarke, Duncan J. [0000-0002-7795-3294], Díaz-Martínez, Laura A., Furniss, Katherine, Giménez-Abián, Juan F., and Clarke, Duncan J.
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Centrosomes ,Chromosomal Proteins, Non-Histone ,Smc1 ,Mitosis ,Cell Cycle Proteins ,Smc3 ,Biology ,Rad21 ,Chromosome Segregation ,Humans ,RNA, Small Interfering ,Cohesins ,Molecular Biology ,Metaphase ,Scc1 ,Centrioles ,Anaphase ,Cohesin ,Kinetochore ,Nuclear Proteins ,Centriole ,Cell Biology ,Phosphoproteins ,Spindle apparatus ,Cell biology ,DNA-Binding Proteins ,Spindle checkpoint ,Chondroitin Sulfate Proteoglycans ,RNA Interference ,Mcd1 ,biological phenomena, cell phenomena, and immunity ,Separase ,Multipolar spindles ,HeLa Cells ,Developmental Biology - Abstract
11p.-6 fig., Multi-polar mitosis is strongly linked with aggressive cancers and it is a histological diagnostic of tumor-grade. However, factors that cause chromosomes to segregate to more than two spindle poles are not well understood. Here we show that cohesins Rad21, Smc1 and Smc3 are required for bipolar mitosis in human cells. After Rad21 depletion, chromosomes align at the metaphase plate and bipolar spindles assemble in most cases, but in anaphase the separated chromatids segregate to multiple poles. Time-lapse microscopy revealed that the spindle poles often become split in Rad21-depleted metaphase cells. Interestingly, exogenous expression of non-cleavable Rad21 results in multi-polar anaphase. Since cohesins are present at the spindle poles in mitosis, these data are consistent with a non-chromosomal function of cohesin., L.A.D.M. was partially funded by CONACyT, J.F.G.A. by BFU2008-03579/BMC and P.E. by BFU2008-02947-C02-02/BMC, and D.J.C. by a seed grant from the University of Minnesota Academic Health Center.
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- 2010
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14. Determinants of Rad21 localization at the centrosome in human cells
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Juan F. Giménez-Abián, Nicole A. Beauchene, Hung-Ji Tsai, Duncan J. Clarke, Laura A. Díaz-Martínez, and Wei Shan Hsu
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Chromosomal Proteins, Non-Histone ,Mitosis ,Cell Cycle Proteins ,Centrosome cycle ,Protein Serine-Threonine Kinases ,Biology ,Aurora Kinases ,Chromosome Segregation ,Proto-Oncogene Proteins ,Endopeptidases ,Humans ,RNA, Small Interfering ,Molecular Biology ,Separase ,Centrosome ,Cohesin ,Kinetochore ,Nuclear Proteins ,Cell Biology ,Phosphoproteins ,Spindle apparatus ,Cell biology ,DNA-Binding Proteins ,Establishment of sister chromatid cohesion ,Spindle checkpoint ,RNA Interference ,biological phenomena, cell phenomena, and immunity ,Anaphase ,HeLa Cells ,Developmental Biology - Abstract
Cohesin proteins help maintain the physical associations between sister chromatids that arise in S-phase and are removed in anaphase. Recent studies found that cohesins also localize to the centrosomes, the organelles that organize the mitotic bipolar spindle. We find that the cohesin protein Rad21 localizes to centrosomes in a manner that is dependent upon known regulators of sister chromatid cohesion as well as regulators of centrosome function. These data suggest that Rad21 functions at the centrosome and that the regulators of Rad21 coordinate the centrosome and chromosomal functions of cohesin.
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- 2010
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15. Multiple Anaphase-promoting Complex/Cyclosome Degrons Mediate the Degradation of Human Sgo1*
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Hongtao Yu, Bing Li, Sara E. Crow, Laura A. Díaz-Martínez, and Zemfira N. Karamysheva
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Amino Acid Motifs ,Centromere ,BUB1 ,Cell Cycle Proteins ,Biology ,Chromatids ,Protein Serine-Threonine Kinases ,Biochemistry ,Anaphase-Promoting Complex-Cyclosome ,APC/C activator protein CDH1 ,S Phase ,Ubiquitin ,Antigens, CD ,Humans ,Amino Acid Sequence ,Molecular Biology ,Mitosis ,Sequence Deletion ,Protein Synthesis, Post-Translational Modification, and Degradation ,G1 Phase ,Ubiquitin-Protein Ligase Complexes ,Cell Biology ,Cell cycle ,Cadherins ,Molecular biology ,Cell biology ,Spindle checkpoint ,Mitotic exit ,biology.protein ,HeLa Cells - Abstract
Shugoshin 1 (Sgo1) protects centromeric sister-chromatid cohesion in early mitosis and, thus, prevents premature sister-chromatid separation. The protein level of Sgo1 is regulated during the cell cycle; it peaks in mitosis and is down-regulated in G1/S. Here we show that Sgo1 is degraded during the exit from mitosis, and its degradation depends on the anaphase-promoting complex/cyclosome (APC/C). Overexpression of Cdh1 reduces the protein levels of ectopically expressed Sgo1 in human cells. Sgo1 is ubiquitinated by APC/C bound to Cdh1 (APC/C(Cdh1)) in vitro. We have further identified two functional degradation motifs in Sgo1; that is, a KEN (Lys-Glu-Asn) box and a destruction box (D box). Although removal of either motif is not sufficient to stabilize Sgo1, Sgo1 with both KEN box and D box deleted is stable in cells. Surprisingly, mitosis progresses normally in the presence of non-degradable Sgo1, indicating that degradation of Sgo1 is not required for sister-chromatid separation or mitotic exit. Finally, we show that the spindle checkpoint kinase Bub1 contributes to the maintenance of Sgo1 steady-state protein levels in an APC/C-independent mechanism.
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- 2009
16. Chromosome cohesion – rings, knots, orcs and fellowship
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Juan F. Giménez-Abián, Laura A. Díaz-Martínez, and Duncan J. Clarke
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DNA Replication ,Cohesin complex ,Chromosomal Proteins, Non-Histone ,Origin Recognition Complex ,Cell Cycle Proteins ,Saccharomyces cerevisiae ,Biology ,Chromosomes ,S Phase ,Chromosome segregation ,Chromosome Segregation ,Cohesion (geology) ,Animals ,Humans ,Meiotic Prophase I ,Anaphase ,Genetics ,Cohesin loading ,Chromosome Cohesion ,Models, Genetic ,Cohesin ,Cell Biology ,Meiosis ,Evolutionary biology ,Chromatid ,biological phenomena, cell phenomena, and immunity ,Sister Chromatid Exchange - Abstract
Sister-chromatid cohesion is essential for accurate chromosome segregation. A key discovery towards our understanding of sister-chromatid cohesion was made 10 years ago with the identification of cohesins. Since then, cohesins have been shown to be involved in cohesion in numerous organisms, from yeast to mammals. Studies of the composition, regulation and structure of the cohesin complex led to a model in which cohesin loading during S-phase establishes cohesion, and cohesin cleavage at the onset of anaphase allows sister-chromatid separation. However, recent studies have revealed activities that provide cohesion in the absence of cohesin. Here we review these advances and propose an integrative model in which chromatid cohesion is a result of the combined activities of multiple cohesion mechanisms.
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- 2008
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17. Regulation of Centromeric Cohesion by Sororin Independently of the APC/C
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Juan F. Giménez-Abián, Laura A. Díaz-Martínez, and Duncan J. Clarke
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Genetics ,Cohesin ,Kinetochore ,Centromere ,Ubiquitin-Protein Ligase Complexes ,Cell Cycle Proteins ,Spindle Apparatus ,Cell Biology ,Chromatids ,Biology ,Anaphase-Promoting Complex-Cyclosome ,Spindle apparatus ,Establishment of sister chromatid cohesion ,Spindle checkpoint ,Humans ,Sister chromatids ,biological phenomena, cell phenomena, and immunity ,Separase ,Molecular Biology ,Adaptor Proteins, Signal Transducing ,HeLa Cells ,Developmental Biology ,Anaphase - Abstract
Regulated separation of sister chromatids is the key event of mitosis. Sister chromatids remain cohered from the moment of DNA duplication until anaphase. Two known factors account for cohesion: DNA catenations and cohesin complexes. Premature loss of centromeric cohesion is prevented by the spindle checkpoint. Here we show that sororin, a protein implicated in promoting cohesion through effects on cohesin complexes, is involved in maintenance of cohesion in response to the spindle checkpoint. Sororin-depleted cells reach prometaphase with cohered sister chromatids and are able to form metaphase plates. However, loss of cohesion in anaphase is asynchronous and cells are unresponsive to the spindle checkpoint, accumulating with separated sisters scattered throughout the cytoplasm. These phenotypes are similar to those seen after Shugoshin depletion, suggesting that sororin and Shugoshin might act in concert. Furthermore, sororin-depleted and Shugoshin-depleted cells lose cohesion independently of the APC/C. Therefore, sororin and Shugoshin protect centromeric cohesion in response to the spindle checkpoint, but prevent the removal of cohesion by a mechanism independent of the APC/C.
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- 2007
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18. Topoisomerase II Checkpoints: Universal Mechanisms that Regulate Mitosis
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Duncan J. Clarke, Juan F. Giménez-Abián, Catherine A. Andrews, Laura A. Díaz-Martínez, and Amit C. Vas
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Genome instability ,Cell cycle checkpoint ,Mad2 ,Mitosis ,Diketopiperazines ,Biology ,Piperazines ,Prophase ,Chromosomes, Human ,Humans ,Topoisomerase II Inhibitors ,Enzyme Inhibitors ,Molecular Biology ,Anaphase ,Genetics ,fungi ,food and beverages ,Cell Biology ,G2-M DNA damage checkpoint ,Cell cycle ,Neoplasm Proteins ,Cell biology ,Securin ,DNA Topoisomerases, Type II ,Gene Deletion ,Developmental Biology - Abstract
Checkpoint controls confer order to the cell cycle and help prevent genome instability. Here we discuss the Topoisomerase II (Decatenation) Checkpoint which functions to regulate mitotic progression so that chromosomes can be efficiently condensed in prophase and can be segregated with high fidelity in anaphase.
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- 2006
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19. UBL/UBA Ubiquitin Receptor Proteins Bind a Common Tetraubiquitin Chain
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Duncan J. Clarke, Yang Kang, Laura A. Díaz-Martínez, Nathan S. Winter, Kylie J. Walters, and Rebecca A. Vossler
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Saccharomyces cerevisiae Proteins ,Recombinant Fusion Proteins ,Cell ,Receptors, Cytoplasmic and Nuclear ,Plasma protein binding ,Protein degradation ,Biology ,Ubiquitin ,Structural Biology ,medicine ,Animals ,Humans ,Polyubiquitin ,Receptor ,Nuclear Magnetic Resonance, Biomolecular ,Molecular Biology ,Extramural ,Molecular biology ,Cell biology ,DNA-Binding Proteins ,medicine.anatomical_structure ,Proteasome ,biology.protein ,Dimerization ,Heteronuclear single quantum coherence spectroscopy ,Protein Binding - Abstract
The ubiquitin-proteasome pathway is essential throughout the life cycle of a cell. This system employs an astounding number of proteins to ubiquitylate and to deliver protein substrates to the proteasome for their degradation. At the heart of this process is the large and growing family of ubiquitin receptor proteins. Within this family is an intensely studied group that contains both ubiquitin-like (UBL) and ubiquitin-associated (UBA) domains: Rad23, Ddi1 and Dsk2. Although UBL/UBA family members are reported to regulate the degradation of other proteins, their individual roles in ubiquitin-mediated protein degradation has proven difficult to resolve due to their overlapping functional roles and interaction with each other and other ubiquitin family members. Here, we use a combination of NMR spectroscopy and molecular biology to reveal that Rad23 and Ddi1 interact with each other by using UBL/UBA domain interactions in a manner that does not preclude their interaction with ubiquitin. We demonstrate that UBL/UBA proteins can bind a common tetraubiquitin molecule and thereby provide strong evidence for a model in which chains adopt an opened structure to bind multiple receptor proteins. Altogether our results suggest a mechanism through which UBL/UBA proteins could protect chains from premature de-ubiquitylation and unnecessary elongation during their transit to the proteasome.
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- 2006
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20. The Cdc20-binding Phe box of the spindle checkpoint protein BubR1 maintains the mitotic checkpoint complex during mitosis
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Luying Jia, Wei Tian, Bing Li, Chad A. Brautigam, Ross Warrington, Xuelian Luo, Hongtao Yu, and Laura A. Díaz-Martínez
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Cell cycle checkpoint ,Mad2 ,Cdc20 Proteins ,BUB3 ,Amino Acid Motifs ,Mitosis ,Saccharomyces cerevisiae ,Spindle Apparatus ,Biology ,Protein Serine-Threonine Kinases ,Biochemistry ,Antigens, CD ,Protein Interaction Mapping ,Homeostasis ,Humans ,Gene Silencing ,Kinetochores ,Molecular Biology ,Glutathione Transferase ,Kinetochore ,Ubiquitin ,Cell Cycle ,food and beverages ,Mitotic checkpoint complex ,Cell Biology ,G2-M DNA damage checkpoint ,Cadherins ,Cell biology ,Spindle checkpoint ,Anaphase-promoting complex ,biological phenomena, cell phenomena, and immunity ,HeLa Cells ,Protein Binding - Abstract
The spindle checkpoint ensures accurate chromosome segregation by monitoring kinetochore-microtubule attachment. Unattached or tensionless kinetochores activate the checkpoint and enhance the production of the mitotic checkpoint complex (MCC) consisting of BubR1, Bub3, Mad2, and Cdc20. MCC is a critical checkpoint inhibitor of the anaphase-promoting complex/cyclosome, a ubiquitin ligase required for anaphase onset. The N-terminal region of BubR1 binds to both Cdc20 and Mad2, thus nucleating MCC formation. The middle region of human BubR1 (BubR1M) also interacts with Cdc20, but the nature and function of this interaction are not understood. Here we identify two critical motifs within BubR1M that contribute to Cdc20 binding and anaphase-promoting complex/cyclosome inhibition: a destruction box (D box) and a phenylalanine-containing motif termed the Phe box. A BubR1 mutant lacking these motifs is defective in MCC maintenance in mitotic human cells but is capable of supporting spindle-checkpoint function. Thus, the BubR1M-Cdc20 interaction indirectly contributes to MCC homeostasis. Its apparent dispensability in the spindle checkpoint might be due to functional duality or redundant, competing mechanisms.
- Published
- 2014
21. The complexity of life and death decisions in mitosis
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Laura A. Díaz-Martínez and Hongtao Yu
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mitosis ,Cancer Research ,Programmed cell death ,taxol ,apoptosis ,Biology ,Cell biology ,Spindle checkpoint ,Crosstalk (biology) ,cell death ,mitochondrial fusion ,Microtubule ,Mitotic exit ,Cancer cell ,Molecular Medicine ,Author'S View ,Mitosis - Abstract
The anticancer drug taxol stabilizes microtubules and activates the spindle checkpoint, causing prolonged mitotic arrest in cancer cells. Our recent work suggests that the cellular decision to live or die following mitotic arrest is a complex process involving crosstalk between competing apoptotic and adaptation pathways.
- Published
- 2014
22. Genome-wide siRNA screen reveals coupling between mitotic apoptosis and adaptation
- Author
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Michael G. Roth, Shuguang Wei, Xian Jin Xie, Bing Li, Hongtao Yu, Zemfira N. Karamysheva, Laura A. Díaz-Martínez, and Ross Warrington
- Subjects
Small interfering RNA ,Mad2 ,Cell division ,Paclitaxel ,Cyclin B ,Mitosis ,Antineoplastic Agents ,Apoptosis ,General Biochemistry, Genetics and Molecular Biology ,Humans ,RNA, Small Interfering ,Cyclin B1 ,Molecular Biology ,General Immunology and Microbiology ,biology ,General Neuroscience ,Gene Expression Profiling ,Epithelial Cells ,Adaptation, Physiological ,Cell biology ,Have You Seen? ,biology.protein ,Mitochondrial fission ,HeLa Cells - Abstract
The antimitotic anti-cancer drugs, including taxol, perturb spindle dynamics, and induce prolonged, spindle checkpoint-dependent mitotic arrest in cancer cells. These cells then either undergo apoptosis triggered by the intrinsic mitochondrial pathway or exit mitosis without proper cell division in an adaptation pathway. Using a genome-wide small interfering RNA (siRNA) screen in taxol-treated HeLa cells, we systematically identify components of the mitotic apoptosis and adaptation pathways. We show that the Mad2 inhibitor p31(comet) actively promotes mitotic adaptation through cyclin B1 degradation and has a minor separate function in suppressing apoptosis. Conversely, the pro-apoptotic Bcl2 family member, Noxa, is a critical initiator of mitotic cell death. Unexpectedly, the upstream components of the mitochondrial apoptosis pathway and the mitochondrial fission protein Drp1 contribute to mitotic adaption. Our results reveal crosstalk between the apoptosis and adaptation pathways during mitotic arrest.
- Published
- 2014
23. Evidence That the Yeast Spindle Assembly Checkpoint Has a Target Other Than the Anaphase Promoting Complex
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Vincent Guacci, Amit C. Vas, Duncan J. Clarke, Catherine A. Andrews, Juan F. Giménez-Abián, and Laura A. Díaz-Martínez
- Subjects
G2 Phase ,Saccharomyces cerevisiae Proteins ,Cell cycle checkpoint ,Mad2 ,Cdc20 Proteins ,BUB1 ,Cell Cycle Proteins ,Saccharomyces cerevisiae ,Spindle Apparatus ,Cyclin B ,Biology ,Anaphase-Promoting Complex-Cyclosome ,Molecular Biology ,Kinetochore ,Nuclear Proteins ,Ubiquitin-Protein Ligase Complexes ,Cell Biology ,G2-M DNA damage checkpoint ,Spindle apparatus ,Cell biology ,Securin ,Spindle checkpoint ,biological phenomena, cell phenomena, and immunity ,Anaphase-promoting complex ,Cell Division ,Developmental Biology - Abstract
The spindle assembly checkpoint monitors biorientation of chromosomes on the metaphase spindle and inhibits the Anaphase Promoting Complex (APC) specificity factor Cdc20. If APC-Cdc20 is the sole target of the spindle checkpoint, then cells lacking APC and its targets, B-type cyclin and securin, would lack spindle checkpoint function. We tested this hypothesis in yeast cells that are APC-null. Surprisingly, we find that such yeast cells are able to activate the spindle assembly checkpoint, delaying cell cycle progression in G2/M phase. These data suggest that the spindle checkpoint has a non-APC target that can restrain anaphase onset.
- Published
- 2005
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24. Ras regulates kinesin 13 family members to control cell migration pathways in transformed human bronchial epithelial cells
- Author
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Jill E. Larsen, Elma Zaganjor, Joshua X. Gonzales, John D. Minna, Lauren M. Weil, Laura A. Díaz-Martínez, Melanie H. Cobb, Stina M. Singel, Luc Girard, and Jihan K. Osborne
- Subjects
MAPK/ERK pathway ,Cancer Research ,Epithelial-Mesenchymal Transition ,Kinesin 13 ,Kinesins ,Bronchi ,Biology ,medicine.disease_cause ,Microtubules ,Article ,03 medical and health sciences ,0302 clinical medicine ,Microtubule ,Cell Movement ,Genetics ,medicine ,Humans ,Epithelial–mesenchymal transition ,Molecular Biology ,Cytoskeleton ,030304 developmental biology ,0303 health sciences ,Matrigel ,Epithelial Cells ,Cell biology ,Gene Expression Regulation, Neoplastic ,Carcinoma, Bronchogenic ,Cell Transformation, Neoplastic ,Genes, ras ,030220 oncology & carcinogenesis ,Gene Knockdown Techniques ,Mutation ,Cancer research ,Kinesin ,Signal transduction ,Tumor Suppressor Protein p53 ,Carcinogenesis ,Signal Transduction - Abstract
We show that expression of the microtubule depolymerizing kinesin KIF2C is induced by transformation of immortalized human bronchial epithelial cells (HBEC) by expression of K-Ras(G12V) and knockdown of p53. Further investigation demonstrates that this is due to the K-Ras/ERK1/2 MAPK pathway, as loss of p53 had little effect on KIF2C expression. In addition to KIF2C, we also found that the related kinesin KIF2A is modestly upregulated in this model system; both proteins are expressed more highly in many lung cancer cell lines compared to normal tissue. As a consequence of their depolymerizing activity, these kinesins increase dynamic instability of microtubules. Depletion of either of these kinesins impairs the ability of cells transformed with mutant K-Ras to migrate and invade matrigel. However, depletion of these kinesins does not reverse the epithelial to mesenchymal transition (EMT) caused by mutant K-Ras. Our studies indicate that increased expression of microtubule destabilizing factors can occur during oncogenesis to support enhanced migration and invasion of tumor cells.
- Published
- 2013
25. Self-Regulating Model for Control of Replication Origin Firing in Budding Yeast
- Author
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Duncan J. Clarke and Laura A. Díaz-Martínez
- Subjects
Genetics ,Licensing factor ,Replication stress ,Genome integrity ,Cell Biology ,Biology ,Molecular Biology ,Budding yeast ,Replication (computing) ,Developmental Biology ,Cell biology - Abstract
A major research area concentrates on understanding the regulation of replication origin firing. It is now appreciated that checkpoint signaling participates in this controlled process and that defects in such signaling systems affect genome integrity. Inhibition of replication origin firing is most obviously apparent under conditions of replication stress, but origin firing must also be regulated on a minute-by-minute basis as cells progress normally through an unabated S-phase. Here we summarize a straightforward model to account for how origin firing could be controlled by a self-regulating system.
- Published
- 2003
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26. Chromosome Condensation and Cohesion
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Laura A. Díaz-Martínez and Hongtao Yu
- Subjects
Genetics ,Establishment of sister chromatid cohesion ,Chromosome segregation ,biology ,Cohesin complex ,Cohesin ,Kinetochore ,Condensin ,biology.protein ,Sister chromatids ,biological phenomena, cell phenomena, and immunity ,Anaphase - Abstract
The diploid human genome consists of 46 chromosomes, which collectively contain about 2 m of deoxyribonucleic acid (DNA). During mitosis, the genome is packaged into 46 pairs of sister chromatids, each less than 10 μm long. Two fundamental mechanisms govern the formation and maintenance of chromosome structure during mitosis: (i) the dramatic and progressive compaction of chromosomes in the process of chromosome condensation and (ii) the establishment of the physical linkages or cohesion between the sister chromatids. Central to the processes of chromosome condensation and cohesion are the type II topoisomerases and the Structure Maintenance of Chromosomes (SMC) family of proteins, which form the condensin and cohesin complexes. These proteins cooperate to ensure chromosome condensation and cohesion, thus promoting the accurate partition of the genome during mitosis. Key Concepts: Chromosome condensation and cohesion are necessary for accurate chromosome segregation. Condensin and topoisomerase IIα are the major regulators of chromosome condensation. Sister-chromatid cohesion is required for the bipolar attachment of chromosomes to the spindle microtubules and counteracts the spindle pulling forces generated at the kinetochores. The cohesin complex is critical for sister-chromatid cohesion. Both DNA catenation and sister-chromatid cohesion have to be resolved for proper sister-chromatid separation. Centromeric cohesion is regulated by the spindle checkpoint. Its removal occurs at the onset of anaphase. Keywords: chromosome condensation; sister-chromatid cohesion; chromosome segregation; mitosis; condensin; cohesin; topoisomerase II
- Published
- 2010
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27. Rad21 is required for centrosome integrity in human cells independently of its role in chromosome cohesion
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Nicole A. Beauchene, Juan F. Giménez-Abián, Katherine Furniss, Pedro Esponda, Duncan J. Clarke, Hung-Ji Tsai, Laura A. Díaz-Martínez, Christopher M Chamberlain, Wei Shan Hsu, Comisión Nacional de Investigación Científica y Tecnológica (Chile), Ministerio de Ciencia e Innovación (España), University of Minnesota, Díaz-Martínez, Laura A. [0000-0002-7226-7068], Furniss, Katherine [0000-0003-2851-8306], Hsu, W.-S. [0000-0003-2532-5162], Tsai, Hung-Ji [0000-0003-4192-9310], Giménez-Abián, Juan F. [0000-0002-9220-286X], Clarke, Duncan J. [0000-0002-7795-3294], Díaz-Martínez, Laura A., Furniss, Katherine, Hsu, W.-S., Tsai, Hung-Ji, Giménez-Abián, Juan F., and Clarke, Duncan J.
- Subjects
Centrosomes ,Chromosomal Proteins, Non-Histone ,Smc1 ,Mitosis ,Centrosome cycle ,Cell Cycle Proteins ,Smc3 ,Biology ,Protein Serine-Threonine Kinases ,Spindle pole body ,Rad21 ,Chromosome Segregation ,Proto-Oncogene Proteins ,Humans ,RNA, Small Interfering ,Molecular Biology ,Cohesins ,Interphase ,Scc1 ,Genetics ,Centrosome ,Cohesin ,Kinetochore ,Nuclear Proteins ,Cell Biology ,Centriole ,Phosphoproteins ,Spindle apparatus ,Cell biology ,DNA-Binding Proteins ,Plk1 ,RNA Interference ,Mcd1 ,Separase ,biological phenomena, cell phenomena, and immunity ,Developmental Biology ,HeLa Cells - Abstract
8 p.-4 fig., Classically, chromosomal functions in DNA repair and sister chromatid association have been assigned to the cohesin proteins. More recent studies have provided evidence that cohesins also localize to the centrosomes, which organize the bipolar spindle during mitosis. Depletion of cohesin proteins is associated with multi-polar mitosis in which spindle pole integrity is compromised. However, the spindle pole defects after cohesin depletion could be an indirect consequence of a chromosomal cohesion defect which might impact centrosome integrity via alterations to the spindle microtubule network. Here we show that the cohesin Rad21 is required for centrosome integrity independently of its role as a chromosomal cohesin. Thus, Rad21 may promote accurate chromosome transmission not only by virtue of its function as a chromosomal cohesin, but also because it is required for centrosome function., L.A.D.M. was partially funded by CONACyT, J.F.G.A. by BFU2008-03579/BMC and P.E. by BFU2008-02947-C02-02/BMC, and D.J.C. by a seed grant from the University of Minnesota Academic Health Center.
- Published
- 2010
28. Cohesin: a multi-purpose chromatin glue
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Hongtao Yu and Laura A. Díaz-Martínez
- Subjects
CCCTC-Binding Factor ,Cohesin ,Kinetochore ,Chromosomal Proteins, Non-Histone ,Cell Cycle Proteins ,Cell Biology ,General Medicine ,Biology ,Models, Biological ,Chromatin ,Cell biology ,Spindle apparatus ,Establishment of sister chromatid cohesion ,Repressor Proteins ,Gene Expression Regulation ,Centromere ,Genetics ,Sister chromatids ,Animals ,Humans ,biological phenomena, cell phenomena, and immunity ,Separase ,Molecular Biology ,Interphase - Abstract
Long thought to be the glue responsible for holding sister chromatids together, cohesin has been found to be stickier than previously thought. Recent discoveries point to cohesin having a role in transcription regulation by mediating long-distance intra-chromosomal interactions.
- Published
- 2009
29. Chromosome cohesion and the spindle checkpoint
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Laura A. Díaz-Martínez and Duncan J. Clarke
- Subjects
Genetics ,Cohesin ,Kinetochore ,Cdc20 Proteins ,Chromosomal Proteins, Non-Histone ,Calcium-Binding Proteins ,Mitosis ,Cell Cycle Proteins ,Cell Biology ,Biology ,Spindle apparatus ,Chromosome segregation ,Repressor Proteins ,Spindle checkpoint ,Chromosome Segregation ,Centromere ,Mad2 Proteins ,Sister chromatids ,Humans ,Anaphase ,Molecular Biology ,Developmental Biology - Abstract
Accurate chromosome segregation constitutes the basis of inheritance. Mistakes in chromosome segregation during mitosis lead to aneuploidy, a common feature of tumors. The accuracy of chromosome segregation is governed by a complex network of processes which ensure that each daughter cell receives the correct number of chromosomes. Herein we review recent developments in the understanding of chromosome segregation, focusing on the cohesion that holds the sister chromatids together and the spindle checkpoint which regulates anaphase onset.
- Published
- 2009
30. Cohesin Is Dispensable for Centromere Cohesion in Human Cells
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Duncan J. Clarke, Juan F. Giménez-Abián, and Laura A. Díaz-Martínez
- Subjects
Centromere separation ,Cohesin complex ,Chromosomal Proteins, Non-Histone ,Centromere ,Cell Biology/Cell Growth and Division ,lcsh:Medicine ,Mitosis ,Apoptosis ,Cell Cycle Proteins ,Biology ,Transfection ,03 medical and health sciences ,0302 clinical medicine ,Prophase ,Sister chromatids ,Humans ,RNA, Small Interfering ,lcsh:Science ,030304 developmental biology ,Anaphase ,Genetics ,0303 health sciences ,Multidisciplinary ,Cohesin ,Nocodazole ,lcsh:R ,3. Good health ,Kinetics ,lcsh:Q ,Rad51 Recombinase ,Separase ,biological phenomena, cell phenomena, and immunity ,Sister Chromatid Exchange ,030217 neurology & neurosurgery ,Research Article ,HeLa Cells - Abstract
We thank R Johnson, K Evenson and L Lanier for use of facilities, K Sullivan, J Peters, H Zou and H Yu for reagents., Background: Proper regulation of the cohesion at the centromeres of human chromosomes is essential for accurate genome transmission. Exactly how cohesion is maintained and is then dissolved in anaphase is not understood. Principal Findings: We have investigated the role of the cohesin complex at centromeres in human cells both by depleting cohesin subunits using RNA interference and also by expressing a non-cleavable version of the Rad21 cohesin protein. Rad21 depletion results in aberrant anaphase, during which the sister chromatids separate and segregate in an asynchronous fashion. However, centromere cohesion was maintained before anaphase in Rad21-depleted cells, and the primary constrictions at centromeres were indistinguishable from those in control cells. Expression of non-cleavable Rad21 (NC-Rad21), in which the sites normally cleaved by separase are mutated, resulted in delayed sister chromatid resolution in prophase and prometaphase, and a blockage of chromosome arm separation in anaphase, but did not impede centromere separation. Conclusions: These data indicate that cohesin complexes are dispensable for sister cohesion in early mitosis, yet play an important part in the fidelity of sister separation and segregation during anaphase. Cleavage at the separase-sensitive sites of Rad21 is important for arm separation, but not for centromere separation., This work was funded by NIH grant CA099033 (D.J.C.) and J.F.G.A was partly supported by MEC-Spain DGI and L.A.D.M. by CONACyT.
- Published
- 2007
31. Role of Rad23 and Dsk2 in Nucleotide Excision Repair and Spindle Pole Body Duplication
- Author
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Laura A. Díaz-Martínez
- Subjects
Spindle pole body duplication ,chemistry.chemical_classification ,Ubiquitin ,biology ,Proteasome ,chemistry ,Gene duplication ,biology.protein ,Nucleotide ,Cell cycle ,Yeast ,Cell biology ,Nucleotide excision repair - Abstract
The three yeast UBL-UBA proteins, Rad23, Ddi1 and Dsk2 bind both ubiquitin and the proteasome. They are not essential for viability and some redundancy in terms of stabilization of ubiquitinated substrates has been shown, suggesting that they may have overlapping functions. Here we showed that Rad23 is indeed redundant with both Ddi1 and Dsk2 for cell cycle related roles. Surprisingly, Ddi1 and Dsk2 do not show any redundancy but the triple deletion shows an synthetic defect, suggesting that Rad23 has at least two different roles in cell cycle progression during G2/M. In addition, we found that these putative roles do not include a role in SPB duplication, which contradicts a previously reported study (3). We do not know at the time the nature of this discrepancy. In addition, we show that a tetra-ubiquitin chain is able to bind several UBL-UBA proteins at once, which might explain the redundancies observed, as well as suggesting that these multiple interactions might be relevant for efficient but regulated delivery of ubiquitinated substrates to the proteasome.
- Published
- 2007
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32. Sororin is tethered to Cohesin SA2
- Author
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Duncan J. Clarke and Laura A. Díaz-Martínez
- Subjects
Genetics ,Cohesin ,Kinetochore ,Cell Biology ,Biology ,Cell biology ,Chromosome segregation ,Establishment of sister chromatid cohesion ,Sister chromatids ,Chromatid ,Separase ,Molecular Biology ,Developmental Biology ,Anaphase - Abstract
To produce euploid progeny with equal chromosome complements and identical genomes, cells must achieve accurate chromosome segregation during mitosis. Many cellular processes contribute to this fidelity of genome transmission, including the fundamental principle that the identical sister chromatids, produced via DNA replication, must remain physically connected until just before their segregation in anaphase. There are 2 overarching mechanisms that account for the cohesion that is maintained between the sisters.1 Firstly, the nascent DNA molecules emerge from the replicative machinery as physically entwined, or catenated, entities. These cannot be resolved from each other without coupled DNA breakage and re-ligation, known as strand passage reactions, that are completed by Type II topoisomerases in preparation for chromatid segregation. The second cohesive mechanism is broadly defined as protein-mediated cohesion, and involves the activity of numerous proteins, including a protein complex named Cohesin whose ability to tether sister DNA molecules has been the subject of intense study. In this issue of Cell Cycle, Zhang and Pati2 describe a key role for the C-terminus of Sororin, a Cohesin regulatory sub-unit required for maintenance of cohesion in human cells.3,4 This discovery promises to stimulate a new understanding of how Cohesin is regulated by Sororin.
- Published
- 2015
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33. Yeast UBL-UBA proteins have partially redundant functions in cell cycle control
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Laura A. Díaz-Martínez, Duncan J. Clarke, Yang Kang, and Kylie J. Walters
- Subjects
0303 health sciences ,biology ,lcsh:Cytology ,Research ,030302 biochemistry & molecular biology ,Cell Biology ,Cell cycle ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,lcsh:RC254-282 ,Biochemistry ,F-box protein ,Yeast ,Spindle pole body ,Cell biology ,03 medical and health sciences ,Proteasome ,Ubiquitin ,biology.protein ,lcsh:QH573-671 ,Molecular Biology ,Mitosis ,Function (biology) ,030304 developmental biology - Abstract
Background Proteins containing ubiquitin-like (UBL) and ubiquitin associated (UBA) domains have been suggested to shuttle ubiquitinated substrates to the proteasome for degradation. There are three UBL-UBA containing proteins in budding yeast: Ddi1, Dsk2 and Rad23, which have been demonstrated to play regulatory roles in targeting ubiquitinated substrates to the proteasome for degradation. An involvement of these proteins in cell cycle related events has also been reported. We tested whether these three proteins act redundantly in the cell cycle. Results Here we show that the UBL-UBA proteins are partially redundant for cell cycle related roles. RAD23 is redundant with DDI1 and DSK2, but DDI1 and DSK2 are not redundant with each other and the triple deletion shows a synthetic effect, suggesting the existence of at least two roles for RAD23 in cell cycle control. The rad23Δddi1Δdsk2Δ triple deletion strain delays both in G2/M-phase and in mid-anaphase at high temperatures with duplicated spindle pole bodies. Cell cycle progression in the triple deletion strain can only be partially rescued by a rad23 allele lacking the c-terminal UBA domain, suggesting that RAD23 requires its c-terminal UBA domain for full function. In addition to their ability to bind ubiquitin and the proteasome, the UBL-UBA proteins also share the ability to homodimerize. Rad23 and Dsk2 dimerization requires their UBL and/or UBA domains whereas Ddi1 dimerization does not. Here we show that Ddi1 homodimerization is necessary for its cell cycle related functions. Conclusion The three yeast UBL-UBA proteins have partially redundant roles required for progression through mitosis.
- Published
- 2006
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34. PIASgamma is required for faithful chromosome segregation in human cells
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Juan F. Giménez-Abián, Yoshiaki Azuma, Duncan J. Clarke, Laura A. Díaz-Martínez, Vincent Guacci, G. Giménez-Martín, and Lorene M. Lanier
- Subjects
Chromosomal Proteins, Non-Histone ,Centromere ,lcsh:Medicine ,Synthesis Phase ,Cell Cycle Proteins ,Biology ,Protein Serine-Threonine Kinases ,Models, Biological ,Chromosome segregation ,03 medical and health sciences ,0302 clinical medicine ,Aurora Kinases ,Chromosome Segregation ,Humans ,Base sequence ,RNA, Small Interfering ,lcsh:Science ,Poly-ADP-Ribose Binding Proteins ,Cohesins ,Metaphase ,030304 developmental biology ,Genetics ,DNA catenations ,0303 health sciences ,Multidisciplinary ,Base Sequence ,Extramural ,lcsh:R ,Calcium-Binding Proteins ,PIASγ ,DNA ,Cell Biology ,Topoisomerase II ,Protein Inhibitors of Activated STAT ,DNA metabolism ,Repressor Proteins ,Cell staining ,DNA Topoisomerases, Type II ,030220 oncology & carcinogenesis ,Mad2 Proteins ,lcsh:Q ,RNA Interference ,biological phenomena, cell phenomena, and immunity ,Anaphase ,HeLa Cells ,Research Article - Abstract
The precision of the metaphase-anaphase transition ensures stable genetic inheritance. The spindle checkpoint blocks anaphase onset until the last chromosome biorients at metaphase plate, then the bonds between sister chromatids are removed and disjoined chromatids segregate to the spindle poles. But, how sister separation is triggered is not fully understood. Principal Findings. We identify PIASc as a human E3 sumo ligase required for timely and efficient sister chromatid separation. In cells lacking PIASc, normal metaphase plates form, but the spindle checkpoint is activated, leading to a prolonged metaphase block. Sister chromatids remain cohered even if cohesin is removed by depletion of hSgo1, because DNA catenations persist at centromeres. PIASc-depleted cells cannot properly localize Topoisomerase II at centromeres or in the cores of mitotic chromosomes, providing a functional link between PIASc and Topoisomerase II. Conclusions. PIASc directs Topoisomerase II to specific chromosome regions that require efficient removal of DNA catenations prior to anaphase. The lack of this activity activates the spindle checkpoint, protecting cells from non-disjunction. Because DNA catenations persist without PIASc in the absence of cohesin, removal of catenations and cohesin rings must be regulated in parallel
- Published
- 2006
35. A mitotic topoisomerase II checkpoint in budding yeast is required for genome stability but acts independently of Pds1/securin
- Author
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Julie Green, Juan F. Giménez-Abián, Amit C. Vas, Brian Meier, Wei-Shan Hsu, Stacy L. Erickson, Krystyn E. VanderWaal, Duncan J. Clarke, Catherine A. Andrews, and Laura A. Díaz-Martínez
- Subjects
G2 Phase ,Cell cycle checkpoint ,Mad2 ,Saccharomyces cerevisiae Proteins ,Mitosis ,Cell Cycle Proteins ,Saccharomyces cerevisiae ,Biology ,Pds1 ,Anaphase-Promoting Complex-Cyclosome ,Genomic Instability ,Endopeptidases ,Genetics ,CHEK1 ,Metaphase ,Separase ,Top2 ,Nuclear Proteins ,Ubiquitin-Protein Ligase Complexes ,G2-M DNA damage checkpoint ,Protein-Tyrosine Kinases ,Molecular biology ,Topoisomerase II ,Cell biology ,Securin ,Spindle checkpoint ,DNA Topoisomerases, Type II ,mitotic checkpoint ,Mutation ,Chromosomes, Fungal ,biological phenomena, cell phenomena, and immunity ,Catenation ,Developmental Biology ,DNA Damage ,Research Paper - Abstract
Topoisomerase II (Topo II) performs topological modifications on double-stranded DNA molecules that are essential for chromosome condensation, resolution, and segregation. In mammals, G2 and metaphase cell cycle delays induced by Topo II poisons have been proposed to be the result of checkpoint activation in response to the catenation state of DNA. However, the apparent lack of such controls in model organisms has excluded genetic proof that Topo II checkpoints exist and are separable from the conventional DNA damage checkpoint controls. But here, we define a Topo II-dependent G2/M checkpoint in a genetically amenable eukaryote, budding yeast, and demonstrate that this checkpoint enhances cell survival. Conversely, a lack of the checkpoint results in aneuploidy. Neither DNA damage-responsive pathways nor Pds1/securin are needed for this checkpoint. Unusually, spindle assembly checkpoint components are required for the Topo II checkpoint, but checkpoint activation is not the result of failed chromosome biorientation or a lack of spindle tension. Thus, compromised Topo II function activates a yeast checkpoint system that operates by a novel mechanism. © 2006 by Cold Spring Harbor Laboratory Press., This work was funded by NIH grant CA099033 (D.J.C.).
- Published
- 2006
36. Anaphase promoting complex or cyclosome?
- Author
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Laura A. Díaz-Martínez, Juan F. Giménez-Abián, and Duncan J. Clarke
- Subjects
Genetics ,Centromere separation ,Ubiquitin-Protein Ligase Complexes ,Cell Biology ,Cell cycle ,Biology ,Anaphase-Promoting Complex-Cyclosome ,Establishment of sister chromatid cohesion ,Evolution, Molecular ,Proteasome ,Securin ,Animals ,Humans ,Separase ,Anaphase-promoting complex ,Anaphase ,Molecular Biology ,Cells, Cultured ,Developmental Biology - Abstract
The anaphase promoting complex/cyclosome (APC/C) was initially described as a multi-subunit protein complex that ubiquitinates anaphase inhibitors thus targeting them for destruction by proteasomes to initiate loss of sister chromatid cohesion. However, recent studies have identified important new functions of the APC/C. Moreover, sister centromere separation can occur in the absence of APC/C activity in mammals, indicating that anaphase onset might be triggered by multiple factors. Here we discuss whether the APC/C functions primarily as the anaphase trigger, or whether it has more general properties, relevant for cell cycle control at multiple developmental and cell cycle stages. Additionally, we discuss the validity of the APC-dependent model for sister segregation in mammals.
- Published
- 2005
37. Proteasome activity is required for centromere separation independently of securin degradation in human cells
- Author
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Juan F. Giménez-Abián, Laura A. Díaz-Martínez, Karin G. Wirth, Consuelo de la Torre, and Duncan J. Clarke
- Subjects
Genetics ,Centromere separation ,Proteasome Endopeptidase Complex ,Centromere ,Cell Biology ,Biology ,Cell biology ,Neoplasm Proteins ,Establishment of sister chromatid cohesion ,Securin ,Spindle checkpoint ,Cell Line, Tumor ,Chromosome Segregation ,Humans ,Anaphase-promoting complex ,Separase ,Anaphase ,Molecular Biology ,Metaphase ,Developmental Biology - Abstract
Loss of centromere cohesion during anaphase in human cells is regulated by the spindle assembly checkpoint and is thought to depend on a ubiquitin ligase, the Anaphase Promoting Complex/Cyclosome (APC). APC-Cdc20 adds ubiquitin chains to securin inducing its destruction by the proteasome and these events correlate with the loss of sister chromatid cohesion and the onset of anaphase. But whether securin destruction is necessary and sufficient for anaphase initiation is not clear. Therefore, we asked if proteasome activity is needed for anaphase onset in human cells that lack securin. We find that even in the absence of securin, a metaphase block with cohered sister centromeres can be enforced in the absence of proteasome activity. Therefore, other targets of the proteasome must be degraded to allow anaphase onset. ©2005 Landes Bioscience.
- Published
- 2005
38. Separase is required at multiple pre-anaphase cell cycle stages in human cells
- Author
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Juan F. Giménez-Abián, Laura A. Díaz-Martínez, Duncan J. Clarke, G. Giménez-Martín, and Irene C. Waizenegger
- Subjects
G2 Phase ,Centromere separation ,Cell Cycle ,Centromere ,Cell Cycle Proteins ,Cell Biology ,Biology ,Cell biology ,Establishment of sister chromatid cohesion ,Securin ,Endopeptidases ,Humans ,RNA Interference ,Prometaphase ,Separase ,Molecular Biology ,Mitosis ,Cell Division ,Developmental Biology ,Anaphase ,HeLa Cells - Abstract
The yeast separase proteins Esp1 and Cut1 are required for loss of sister chromatid cohesion that occurs at the moment of anaphase onset. Circumstantial evidence has linked human separase to centromere separation at anaphase, but a direct test that the role of this enzyme is functionally conserved with the yeast proteins is lacking. Here we describe the effects of separase depletion from human cells using RNA interference. Surprisingly, HeLa cells lacking separase are delayed or arrest at the G2-M phase transition. This arrest is not likely due to the activation of a known checkpoint control, but may be a result of a failure to construct a mitotic chromosome. Without separase, cells also have a prolonged prometaphase, perhaps resulting from defects in spindle assembly or dynamics. In cells that reach mitosis, sister arm resolution and separation are perturbed, whereas in anaphase cells sister centromeres do appear to separate. These data indicate that separase function is not restricted to anaphase initiation and that its role in promoting loss of sister chromatid cohesion might be preferentially at arms but not centromeres.
- Published
- 2005
39. Sgo1 as a guardian of chromosome stability
- Author
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Hongtao Yu and Laura A. Díaz-Martínez
- Subjects
Genetics ,Centrosome ,Chromosome instability ,Chromosome Stability ,Cell Biology ,Biology ,Cell Cycle Protein ,Haploinsufficiency ,Molecular Biology ,Developmental Biology - Published
- 2012
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40. Abstract 3114: Mutational inactivation of STAG2 causes aneuploidy in human cancer
- Author
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Jeffrey A. Toretsky, Jung-Sik Kim, Yardena Samuels, Brent T. Harris, Joshlean Fair, Neerav Shukla, C. David James, Abdel G. Elkahloun, Marc Ladanyi, Laura A. Díaz-Martínez, Taeyon Kim, Todd Waldman, Steven A. Rosenberg, David A. Solomon, and Hongtao Yu
- Subjects
Genetics ,Cancer Research ,Oncology ,medicine ,Aneuploidy ,Biology ,medicine.disease ,Human cancer - Abstract
One of the hallmarks of cancer is chromosomal instability, which leads to aneuploidy, translocations, loss of heterozygosity, and other chromosomal aberrations. Chromosomal instability is an early event in cancer pathogenesis and is thought to help generate the large number of genetic lesions required for a cell to undergo malignant transformation. It has been hypothesized that this instability is due to inactivating mutations in genes that control the mitotic checkpoint and chromosome segregation. However, in the vast majority of human tumors the molecular basis of chromosomal instability and the aneuploidy it produces remains unknown. We have recently identified a clue to the mechanistic origins of aneuploidy through integrative genomic analyses of human tumors (Science 333:1039, 2011). A diverse range of tumor types were found to harbor deletions or inactivating mutations of STAG2, a gene encoding a subunit of the cohesin complex, which regulates the separation of sister chromatids during cell division. Because STAG2 is on the X chromosome, its inactivation requires only a single mutational event. Studying a near-diploid human cell line with a stable karyotype, we found that targeted inactivation of STAG2 led to chromatid cohesion defects and aneuploidy, whereas in two aneuploid human glioblastoma cell lines, targeted correction of the endogenous mutant alleles of STAG2 led to enhanced chromosomal stability. Thus, genetic disruption of cohesin is a cause of aneuploidy in human cancer. These findings and additional unpublished observations regarding the role of STAG2 inactivation in aneuploidy will be presented. Citation Format: {Authors}. {Abstract title} [abstract]. In: Proceedings of the 103rd Annual Meeting of the American Association for Cancer Research; 2012 Mar 31-Apr 4; Chicago, IL. Philadelphia (PA): AACR; Cancer Res 2012;72(8 Suppl):Abstract nr 3114. doi:1538-7445.AM2012-3114
- Published
- 2012
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41. Timeless makes some time for itself
- Author
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Laura A. Díaz-Martínez and Duncan J. Clarke
- Subjects
Timeless ,Cell Biology ,Biology ,Molecular Biology ,Data science ,Developmental Biology - Published
- 2011
- Full Text
- View/download PDF
42. Running on a treadmill: dynamic inhibition of APC/C by the spindle checkpoint
- Author
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Laura A. Díaz-Martínez and Hongtao Yu
- Subjects
0303 health sciences ,Cell cycle checkpoint ,Mad2 ,lcsh:Cytology ,BUB3 ,Mitotic checkpoint complex ,Cell Biology ,Biology ,G2-M DNA damage checkpoint ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,lcsh:RC254-282 ,Biochemistry ,APC/C activator protein CDH1 ,Cell biology ,03 medical and health sciences ,Spindle checkpoint ,0302 clinical medicine ,030220 oncology & carcinogenesis ,Commentary ,lcsh:QH573-671 ,Anaphase-promoting complex ,Molecular Biology ,030304 developmental biology - Abstract
During mitosis, the genome duplicated during S-phase is synchronously and accurately segregated to the two daughter cells. The spindle checkpoint prevents premature sister-chromatid separation and mitotic exit. The anaphase-promoting complex/cyclosome (APC/C) is a key target of the spindle checkpoint. Upon checkpoint activation, the mitotic checkpoint complex (MCC) containing Mad2, Bub3, Mad3/BubR1 and Cdc20 inhibits APC/C. Two independent studies in budding yeast have now shed light on the mechanism by which MCC inhibits APC/C. These studies indicate that Mad3 binds to the mitotic activator of APC/C Cdc20 using peptide motifs commonly found in APC/C substrates and thus competes with APC/C substrates for APC/CCdc20 binding. In addition, Mad3 binding to APC/CCdc20 induces Cdc20 ubiquitination by APC/C, leading to the dissociation of MCC. Meanwhile, two other studies have shown that a deubiquitinating enzyme is required for the spindle checkpoint whereas APC/C-dependent ubiquitination is needed for checkpoint inactivation. Collectively, these studies suggest a dynamic model for APC/CCdc20 regulation by MCC in which APC/C- and Mad3-dependent ubiquitination of Cdc20 constitutes a self-regulated switch that rapidly inactivates the spindle checkpoint upon correct chromosome attachment.
- Published
- 2007
- Full Text
- View/download PDF
43. PIASgamma is required for faithful chromosome segregation in human cells.
- Author
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Laura A Díaz-Martínez, Juan F Giménez-Abián, Yoshiaki Azuma, Vincent Guacci, Gonzalo Giménez-Martín, Lorene M Lanier, and Duncan J Clarke
- Subjects
Medicine ,Science - Abstract
BACKGROUND:The precision of the metaphase-anaphase transition ensures stable genetic inheritance. The spindle checkpoint blocks anaphase onset until the last chromosome biorients at metaphase plate, then the bonds between sister chromatids are removed and disjoined chromatids segregate to the spindle poles. But, how sister separation is triggered is not fully understood. PRINCIPAL FINDINGS:We identify PIASgamma as a human E3 sumo ligase required for timely and efficient sister chromatid separation. In cells lacking PIASgamma, normal metaphase plates form, but the spindle checkpoint is activated, leading to a prolonged metaphase block. Sister chromatids remain cohered even if cohesin is removed by depletion of hSgo1, because DNA catenations persist at centromeres. PIASgamma-depleted cells cannot properly localize Topoisomerase II at centromeres or in the cores of mitotic chromosomes, providing a functional link between PIASgamma and Topoisomerase II. CONCLUSIONS:PIASgamma directs Topoisomerase II to specific chromosome regions that require efficient removal of DNA catenations prior to anaphase. The lack of this activity activates the spindle checkpoint, protecting cells from non-disjunction. Because DNA catenations persist without PIASgamma in the absence of cohesin, removal of catenations and cohesin rings must be regulated in parallel.
- Published
- 2006
- Full Text
- View/download PDF
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