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GPT-4o is an autoregressive omni model that accepts as input any combination of text, audio, image, and video, and generates any combination of text, audio, and image outputs. It's trained end-to-end across text, vision, and audio, meaning all inputs and outputs are processed by the same neural network. GPT-4o can respond to audio inputs in as little as 232 milliseconds, with an average of 320 milliseconds, which is similar to human response time in conversation. It matches GPT-4 Turbo performance on text in English and code, with significant improvement on text in non-English languages, while also being much faster and 50\% cheaper in the API. GPT-4o is especially better at vision and audio understanding compared to existing models. In line with our commitment to building AI safely and consistent with our voluntary commitments to the White House, we are sharing the GPT-4o System Card, which includes our Preparedness Framework evaluations. In this System Card, we provide a detailed look at GPT-4o's capabilities, limitations, and safety evaluations across multiple categories, focusing on speech-to-speech while also evaluating text and image capabilities, and measures we've implemented to ensure the model is safe and aligned. We also include third-party assessments on dangerous capabilities, as well as discussion of potential societal impacts of GPT-4o's text and vision capabilities.

Infant crying can serve as a crucial indicator of various physiological and emotional states. This paper introduces a comprehensive approach for detecting infant cries within audio data. We integrate Meta's Wav2Vec with traditional audio features, such as Mel-frequency cepstral coefficients (MFCCs), chroma, and spectral contrast, employing Gradient Boosting Machines (GBM) for cry classification. We validate our approach on a real-world dataset, demonstrating significant performance improvements over existing methods.

We report the first instance of an M dwarf/brown dwarf obliquity measurement for the TOI-2119 system using the Rossiter-McLaughlin effect. TOI-2119 b is a transiting brown dwarf orbiting a young, active early M dwarf ($T_{\rm{eff}}$ = 3553 K). It has a mass of 64.4 M$_{\rm{J}}$ and radius of 1.08 R$_{\rm{J}}$, with an eccentric orbit ($e$ = 0.3) at a period of 7.2 days. For this analysis, we utilise NEID spectroscopic transit observations and ground based simultaneous transit photometry from the Astrophysical Research Consortium (ARC) and the Las Campanas Remote Observatory (LCRO). We fit all available data of TOI-2119 b to refine the brown dwarf parameters and update the ephemeris. The classical Rossiter-McLaughlin technique yields a projected star-planet obliquity of $\lambda=-0.8\pm1.1^\circ$ and a three-dimensional obliquity of $\psi=15.7\pm5.5^\circ$. Additionally, we spatially resolve the stellar surface of TOI-2119 utilising the Reloaded Rossiter-McLaughlin technique to determine the projected star-planet obliquity as $\lambda=1.26 \pm 1.2^{\circ}$. Both of these results agree within $2\sigma$ and confirm the system is aligned, where TOI-2119 b joins an emerging group of aligned brown dwarf obliquities. We also probe stellar surface activity on the surface of TOI-2119 in the form of centre-to-limb variations as well as the potential for differential rotation. Overall, we find tentative evidence for centre-to-limb variations on the star but do not detect evidence of differential rotation., Comment: Accepted to MNRAS pending minor corrections which have been implemented in this version. 12 pages, 9 figures, 4 tables

To mitigate the misuse of large language models (LLMs), such as disinformation, automated phishing, and academic cheating, there is a pressing need for the capability of identifying LLM-generated texts. Watermarking emerges as one promising solution: it plants statistical signals into LLMs' generative processes and subsequently verifies whether LLMs produce given texts. Various watermarking methods (``watermarkers'') have been proposed; yet, due to the lack of unified evaluation platforms, many critical questions remain under-explored: i) What are the strengths/limitations of various watermarkers, especially their attack robustness? ii) How do various design choices impact their robustness? iii) How to optimally operate watermarkers in adversarial environments? To fill this gap, we systematize existing LLM watermarkers and watermark removal attacks, mapping out their design spaces. We then develop WaterPark, a unified platform that integrates 10 state-of-the-art watermarkers and 12 representative attacks. More importantly, leveraging WaterPark, we conduct a comprehensive assessment of existing watermarkers, unveiling the impact of various design choices on their attack robustness. For instance, a watermarker's resilience to increasingly intensive attacks hinges on its context dependency. We further explore the best practices to operate watermarkers in adversarial environments. For instance, using a generic detector alongside a watermark-specific detector improves the security of vulnerable watermarkers. We believe our study sheds light on current LLM watermarking techniques while WaterPark serves as a valuable testbed to facilitate future research., Comment: 22 pages

This paper explores and assesses in what ways generative AI can assist in translating survey instruments. Writing effective survey questions is a challenging and complex task, made even more difficult for surveys that will be translated and deployed in multiple linguistic and cultural settings. Translation errors can be detrimental, with known errors rendering data unusable for its intended purpose and undetected errors leading to incorrect conclusions. A growing number of institutions face this problem as surveys deployed by private and academic organizations globalize, and the success of their current efforts depends heavily on researchers' and translators' expertise and the amount of time each party has to contribute to the task. Thus, multilinguistic and multicultural surveys produced by teams with limited expertise, budgets, or time are at significant risk for translation-based errors in their data. We implement a zero-shot prompt experiment using ChatGPT to explore generative AI's ability to identify features of questions that might be difficult to translate to a linguistic audience other than the source language. We find that ChatGPT can provide meaningful feedback on translation issues, including common source survey language, inconsistent conceptualization, sensitivity and formality issues, and nonexistent concepts. In addition, we provide detailed information on the practicality of the approach, including accessing the necessary software, associated costs, and computational run times. Lastly, based on our findings, we propose avenues for future research that integrate AI into survey translation practices.

We propose a framework for two-player infinite-dimensional games with cooperative or competitive structure. These games take the form of coupled partial differential equations in which players optimize over a space of measures, driven by either a gradient descent or gradient descent-ascent in Wasserstein-2 space. We characterize the properties of the Nash equilibrium of the system, and relate it to the steady state of the dynamics. In the min-max setting, we show, under sufficient convexity conditions, that solutions converge exponentially fast and with explicit rate to the unique Nash equilibrium. Similar results are obtained for the cooperative setting. We apply this framework to distribution shift induced by interactions among a strategic population of agents and an algorithm, proving additional convergence results in the timescale-separated setting. We illustrate the performance of our model on (i) real data from an economics study on Colombia census data, (ii) feature modification in loan applications, and (iii) performative prediction. The numerical experiments demonstrate the importance of distribution-level, rather than moment-level, modeling., Comment: arXiv admin note: text overlap with arXiv:2307.01166

Vision Transformers (ViTs) have shown exceptional performance in vehicle re-identification (ReID) tasks. However, non-square aspect ratios of image or video inputs can negatively impact re-identification accuracy. To address this challenge, we propose a novel, human perception driven, and general ViT-based ReID framework that fuses models trained on various aspect ratios. Our key contributions are threefold: (i) We analyze the impact of aspect ratios on performance using the VeRi-776 and VehicleID datasets, providing guidance for input settings based on the distribution of original image aspect ratios. (ii) We introduce patch-wise mixup strategy during ViT patchification (guided by spatial attention scores) and implement uneven stride for better alignment with object aspect ratios. (iii) We propose a dynamic feature fusion ReID network to enhance model robustness. Our method outperforms state-of-the-art transformer-based approaches on both datasets, with only a minimal increase in inference time per image.

We investigate deformations of skew group algebras that arise from a finite cyclic group acting on a polynomial ring in positive characteristic, where characteristic divides the order of the group. We allow deformations which deform both the group action and the vector space multiplication. We fully characterize the Poincare-Birkhoff-Witt deformations which arise in this setting from multiple perspectives: a necessary and sufficient condition list, a practical road map from which one can generate examples corresponding to any choice of group algebra element, an explicit formula, and a combinatorial analysis of the class of algebras.

This document summarizes the discussions which took place during the PITT-PACC Workshop entitled "Non-Standard Cosmological Epochs and Expansion Histories," held in Pittsburgh, Pennsylvania, Sept. 5-7, 2024. Much like the non-standard cosmological epochs that were the subject of these discussions, the format of this workshop was also non-standard. Rather than consisting of a series of talks from participants, with each person presenting their own work, this workshop was instead organized around free-form discussion blocks, with each centered on a different overall theme and guided by a different set of Discussion Leaders. This document is not intended to serve as a comprehensive review of these topics, but rather as an informal record of the discussions that took place during the workshop, in the hope that the content and free-flowing spirit of these discussions may inspire new ideas and research directions., Comment: 33 pages, LaTeX, 2 figures

Many cultural institutions have made large digitized visual collections available online, often under permissible re-use licences. Creating interfaces for exploring and searching these collections is difficult, particularly in the absence of granular metadata. In this paper, we introduce a method for using state-of-the-art multimodal large language models (LLMs) to enable an open-ended, explainable search and discovery interface for visual collections. We show how our approach can create novel clustering and recommendation systems that avoid common pitfalls of methods based directly on visual embeddings. Of particular interest is the ability to offer concrete textual explanations of each recommendation without the need to preselect the features of interest. Together, these features can create a digital interface that is more open-ended and flexible while also being better suited to addressing privacy and ethical concerns. Through a case study using a collection of documentary photographs, we provide several metrics showing the efficacy and possibilities of our approach., Comment: 16 pages, CHR 2024: Computational Humanities Research Conference, December 4 - 6, 2024, Aarhus University, Denmark

In the 1970s, the United States Environmental Protection Agency sponsored Documerica, a large-scale photography initiative to document environmental subjects nation-wide. While over 15,000 digitized public-domain photographs from the collection are available online, most of the images were scanned from damaged copies of the original prints. We present and evaluate a modified histogram matching technique based on the underlying chemistry of the prints for correcting the damaged images by using training data collected from a small set of undamaged prints. The entire set of color-adjusted Documerica images is made available in an open repository., Comment: 11 pages, CHR 2024: Computational Humanities Research Conference, December 4 - 6, 2024, Aarhus University, Denmark

This paper considers cooperative control of robots involving two different testbed systems in remote locations with communication on the internet. This provides us the capability to exchange robots status like positions, velocities and directions needed for the swarming algorithm. The results show that all robots properly follow some leader defined one of the testbeds. Measurement of data exchange rates show no loss of packets, and average transfer delays stay within tolerance limits for practical applications. In our knowledge, the novelty of this paper concerns this kind of control over a large network like internet.

The neutron star low-mass X-ray binary, EXO 0748--676, recently returned to outburst after a $\sim$ 16 year-long quiescence. Since its return, there has been a global effort to capture the previously unseen rise of the source and to understand its somewhat early return to outburst, as it is typical for a source to spend longer in quiescence than in outburst. Here, we report on the simultaneous optical and X-ray detection of a type I X-ray burst, captured by XMM-Newton during a DDT observation on 30th June 2024. The data show 3 X-ray eclipses consistent with the known ephemeris and one type I X-ray burst at 60492.309 MJD. The X-ray burst is reprocessed into the optical band and captured by XMM-Newton's Optical Monitor during a 4399 s exposure with the B filter in image + fast mode. We determine that the optical peak lags the X-ray peak by 4.46 $\pm$ 1.71s. The optical and X-ray rise times are similar, but the optical decay timescale is shorter than the X-ray decay timescale. The reprocessing site is likely within a few light seconds of the X-ray emitting region, so the companion star, accretion disc and ablated material are all plausible., Comment: 6 Pages, 3 Figures, Accepted for Publication in MNRAS Letters

To track tumors during surgery, information from preoperative CT scans is used to determine their position. However, as the surgeon operates, the tumor may be deformed which presents a major hurdle for accurately resecting the tumor, and can lead to surgical inaccuracy, increased operation time, and excessive margins. This issue is particularly pronounced in robot-assisted partial nephrectomy (RAPN), where the kidney undergoes significant deformations during operation. Toward addressing this, we introduce a occupancy network-based method for the localization of tumors within kidney phantoms undergoing deformations at interactive speeds. We validate our method by introducing a 3D hydrogel kidney phantom embedded with exophytic and endophytic renal tumors. It closely mimics real tissue mechanics to simulate kidney deformation during in vivo surgery, providing excellent contrast and clear delineation of tumor margins to enable automatic threshold-based segmentation. Our findings indicate that the proposed method can localize tumors in moderately deforming kidneys with a margin of 6mm to 10mm, while providing essential volumetric 3D information at over 60Hz. This capability directly enables downstream tasks such as robotic resection., Comment: Accepted at IROS 2024

Tractography fiber clustering using diffusion MRI (dMRI) is a crucial strategy for white matter (WM) parcellation. Current methods primarily use the geometric information of fibers (i.e., the spatial trajectories) to group similar fibers into clusters, overlooking the important functional signals present along the fiber tracts. There is increasing evidence that neural activity in the WM can be measured using functional MRI (fMRI), offering potentially valuable multimodal information for fiber clustering. In this paper, we develop a novel deep learning fiber clustering framework, namely Deep Multi-view Fiber Clustering (DMVFC), that uses joint dMRI and fMRI data to enable functionally consistent WM parcellation. DMVFC can effectively integrate the geometric characteristics of the WM fibers with the fMRI BOLD signals along the fiber tracts. It includes two major components: 1) a multi-view pretraining module to compute embedding features from fiber geometric information and functional signals separately, and 2) a collaborative fine-tuning module to simultaneously refine the two kinds of embeddings. In the experiments, we compare DMVFC with two state-of-the-art fiber clustering methods and demonstrate superior performance in achieving functionally meaningful and consistent WM parcellation results., Comment: 5 pages, 3 figures

Work on shallow discourse parsing in English has focused on the Wall Street Journal corpus, the only large-scale dataset for the language in the PDTB framework. However, the data is not openly available, is restricted to the news domain, and is by now 35 years old. In this paper, we present and evaluate a new open-access, multi-genre benchmark for PDTB-style shallow discourse parsing, based on the existing UD English GUM corpus, for which discourse relation annotations in other frameworks already exist. In a series of experiments on cross-domain relation classification, we show that while our dataset is compatible with PDTB, substantial out-of-domain degradation is observed, which can be alleviated by joint training on both datasets., Comment: Accepted to EMNLP 2024 (main, long); camera-ready version

There is a tremendous amount of interest in AI/ML technologies due to the proliferation of generative AI applications such as ChatGPT. This trend has significantly increased demand on GPUs, which are the workhorses for training AI models. Due to the high costs of GPUs and lacking supply, it has become of interest to optimize GPU usage in HPC centers. MIT Lincoln Laboratory Supercomputing Center (LLSC) has developed an easy-to-use GPU sharing feature supported by LLSC-developed tools including LLsub and LLMapReduce. This approach overcomes some of the limitations with the existing methods for GPU sharing. This allows users to apply GPU sharing whenever possible while they are developing their AI/ML models and/or doing parametric study on their AI models or executing other GPU applications. Based on our initial experimental results with GPU sharing, GPU sharing with triples mode is easy to use and achieved significant improvement in GPU usage and throughput performance for certain types of AI applications.

Brain imaging studies have demonstrated that diffusion MRI tractography geometric shape descriptors can inform the study of the brain's white matter pathways and their relationship to brain function. In this work, we investigate the possibility of utilizing a deep learning model to compute shape measures of the brain's white matter connections. We introduce a novel framework, TractShapeNet, that leverages a point cloud representation of tractography to compute five shape measures: length, span, volume, total surface area, and irregularity. We assess the performance of the method on a large dataset including 1065 healthy young adults. Experiments for shape measure computation demonstrate that our proposed TractShapeNet outperforms other point cloud-based neural network models in both the Pearson correlation coefficient and normalized error metrics. We compare the inference runtime results with the conventional shape computation tool DSI-Studio. Our results demonstrate that a deep learning approach enables faster and more efficient shape measure computation. We also conduct experiments on two downstream language cognition prediction tasks, showing that shape measures from TractShapeNet perform similarly to those computed by DSI-Studio. Our code will be available at: https://github.com/SlicerDMRI/TractShapeNet., Comment: 10 pages, 2 figures, 4 tables. This work has been submitted to the IEEE for possible publication

Reconstructing neuron morphology from 3D light microscope imaging data is critical to aid neuroscientists in analyzing brain networks and neuroanatomy. With the boost from deep learning techniques, a variety of learning-based segmentation models have been developed to enhance the signal-to-noise ratio of raw neuron images as a pre-processing step in the reconstruction workflow. However, most existing models directly encode the latent representative features of volumetric neuron data but neglect their intrinsic morphological knowledge. To address this limitation, we design a novel framework that distills the prior knowledge from a 2D Vision Transformer pre-trained on extensive 2D natural images to facilitate neuronal morphological learning of our 3D Vision Transformer. To bridge the knowledge gap between the 2D natural image and 3D microscopic morphologic domains, we propose a deformable tubular transferring strategy that adapts the pre-trained 2D natural knowledge to the inherent tubular characteristics of neuronal structure in the latent embedding space. The experimental results on the Janelia dataset of the BigNeuron project demonstrate that our method achieves a segmentation performance improvement of 4.53% in mean Dice and 3.56% in mean 95% Hausdorff distance., Comment: 9 pages, 3 figures, and 2 tables. This work has been submitted to the IEEE for possible publication

The increasing use and cost of high performance computing (HPC) requires new easy-to-use tools to enable HPC users and HPC systems engineers to transparently understand the utilization of resources. The MIT Lincoln Laboratory Supercomputing Center (LLSC) has developed a simple command, LLload, to monitor and characterize HPC workloads. LLload plays an important role in identifying opportunities for better utilization of compute resources. LLload can be used to monitor jobs both programmatically and interactively. LLload can characterize users' jobs using various LLload options to achieve better efficiency. This information can be used to inform the user to optimize HPC workloads and improve both CPU and GPU utilization. This includes improvements using judicious oversubscription of the computing resources. Preliminary results suggest significant improvement in GPU utilization and overall throughput performance with GPU overloading in some cases. By enabling users to observe and fix incorrect job submission and/or inappropriate execution setups, LLload can increase the resource usage and improve the overall throughput performance. LLload is a light-weight, easy-to-use tool for both HPC users and HPC systems engineers to monitor HPC workloads to improve system utilization and efficiency.

Metal additive manufacturing (AM) opens the possibility for spatial control of as-fabricated microstructure and properties. However, since the solid state diffusional transformations that drive microstructure outcomes are governed by nonlinear ODEs in terms of temperature, which is itself governed by PDEs over the entire part domain, solving for the system inputs needed to achieve desired microstructure distributions has proven difficult. In this work, we present a trajectory optimization approach for spatial control of microstructure in metal AM, which we demonstrate by controlling the hardness of a low-alloy steel in electron beam powder bed fusion (EB-PBF). To this end, we present models for thermal and microstructural dynamics. Next, we use experimental data to identify the parameters of the microstructure transformation dynamics. We then pose spatial microstructure control as a finite-horizon optimal control problem. The optimal power field trajectory is computed using an augmented Lagrangian differential dynamic programming (AL-DDP) method with GPU acceleration. The resulting time-varying power fields are then realized on an EB-PBF machine through an approximation scheme. Measurements of the resultant hardness shows that the optimized power field trajectory is able to closely produce the desired hardness distribution., Comment: 6 pages, 6 figures

We introduce a novel pipeline for segmenting and structuring color and depth (RGB-D) data. Existing processing pipelines for RGB-D data have focused on extracting geometric information alone. This approach precludes the development of more advanced robotic navigation and manipulation algorithms, which benefit from a semantic understanding of their environment. Our pipeline can segment RGB-D data into accurate semantic masks. These masks are then used to fuse raw captured point clouds into semantically separated point clouds. We store this information using the Universal Scene Description (USD) file format, a format suitable for easy querying by downstream robotics algorithms, human-friendly visualization, and robotics simulation.

metasnf is an R package that enables users to apply meta clustering, a method for efficiently searching a broad space of cluster solutions by clustering the solutions themselves, to clustering workflows based on similarity network fusion (SNF). SNF is a multi-modal data integration algorithm commonly used for biomedical subtype discovery. The package also contains functions to assist with cluster visualization, characterization, and validation. This package can help researchers identify SNF-derived cluster solutions that are guided by context-specific utility over context-agnostic measures of quality., Comment: 72 pages, 22 figures, submitted to Journal of Statistical Software

The shape of the brain's white matter connections is relatively unexplored in diffusion MRI tractography analysis. While it is known that tract shape varies in populations and across the human lifespan, it is unknown if the variability in dMRI tractography-derived shape may relate to the brain's functional variability across individuals. This work explores the potential of leveraging tractography fiber cluster shape measures to predict subject-specific cognitive performance. We implement machine learning models to predict individual cognitive performance scores. We study a large-scale database from the HCP-YA study. We apply an atlas-based fiber cluster parcellation to the dMRI tractography of each individual. We compute 15 shape, microstructure, and connectivity features for each fiber cluster. Using these features as input, we train a total of 210 models to predict 7 different NIH Toolbox cognitive performance assessments. We apply an explainable AI technique, SHAP, to assess the importance of each fiber cluster for prediction. Our results demonstrate that shape measures are predictive of individual cognitive performance. The studied shape measures, such as irregularity, diameter, total surface area, volume, and branch volume, are as effective for prediction as microstructure and connectivity measures. The overall best-performing feature is a shape feature, irregularity, which describes how different a cluster's shape is from an idealized cylinder. Further interpretation using SHAP values suggest that fiber clusters with features highly predictive of cognitive ability are widespread throughout the brain, including fiber clusters from the superficial association, deep association, cerebellar, striatal, and projection pathways. This study demonstrates the strong potential of shape descriptors to enhance the study of the brain's white matter and its relationship to cognitive function.

The Workflows Community Summit gathered 111 participants from 18 countries to discuss emerging trends and challenges in scientific workflows, focusing on six key areas: time-sensitive workflows, AI-HPC convergence, multi-facility workflows, heterogeneous HPC environments, user experience, and FAIR computational workflows. The integration of AI and exascale computing has revolutionized scientific workflows, enabling higher-fidelity models and complex, time-sensitive processes, while introducing challenges in managing heterogeneous environments and multi-facility data dependencies. The rise of large language models is driving computational demands to zettaflop scales, necessitating modular, adaptable systems and cloud-service models to optimize resource utilization and ensure reproducibility. Multi-facility workflows present challenges in data movement, curation, and overcoming institutional silos, while diverse hardware architectures require integrating workflow considerations into early system design and developing standardized resource management tools. The summit emphasized improving user experience in workflow systems and ensuring FAIR workflows to enhance collaboration and accelerate scientific discovery. Key recommendations include developing standardized metrics for time-sensitive workflows, creating frameworks for cloud-HPC integration, implementing distributed-by-design workflow modeling, establishing multi-facility authentication protocols, and accelerating AI integration in HPC workflow management. The summit also called for comprehensive workflow benchmarks, workflow-specific UX principles, and a FAIR workflow maturity model, highlighting the need for continued collaboration in addressing the complex challenges posed by the convergence of AI, HPC, and multi-facility research environments.

In recent years, advances in artificial intelligence (AI) have transformed structural biology, particularly protein structure prediction. Though AI-based methods, such as AlphaFold (AF), often predict single conformations of proteins with high accuracy and confidence, predictions of alternative folds are often inaccurate, low-confidence, or simply not predicted at all. Here, we review three blind spots that alternative conformations reveal about AF-based protein structure prediction. First, proteins that assume conformations distinct from their training-set homologs can be mispredicted. Second, AF overrelies on its training set to predict alternative conformations. Third, degeneracies in pairwise representations can lead to high-confidence predictions inconsistent with experiment. These weaknesses suggest approaches to predict alternative folds more reliably.

We introduce Controller-Embedded Language Model Interactions (CELI), a framework that integrates control logic directly within language model (LM) prompts, facilitating complex, multi-stage task execution. CELI addresses limitations of existing prompt engineering and workflow optimization techniques by embedding control logic directly within the operational context of language models, enabling dynamic adaptation to evolving task requirements. Our framework transfers control from the traditional programming execution environment to the LMs, allowing them to autonomously manage computational workflows while maintaining seamless interaction with external systems and functions. CELI supports arbitrary function calls with variable arguments, bridging the gap between LMs' adaptive reasoning capabilities and conventional software paradigms' structured control mechanisms. To evaluate CELI's versatility and effectiveness, we conducted case studies in two distinct domains: code generation (HumanEval benchmark) and multi-stage content generation (Wikipedia-style articles). The results demonstrate notable performance improvements across a range of domains. CELI achieved a 4.9 percentage point improvement over the best reported score of the baseline GPT-4 model on the HumanEval code generation benchmark. In multi-stage content generation, 94.4% of CELI-produced Wikipedia-style articles met or exceeded first draft quality when optimally configured, with 44.4% achieving high quality. These outcomes underscore CELI's potential for optimizing AI-driven workflows across diverse computational domains., Comment: 26 pages, 2 figures

Climate change is negatively impacting the world's biodiversity. To build automated systems to monitor these negative biodiversity impacts, large-scale, volunteer-collected datasets like iNaturalist are built from community-identified, natural imagery. However, such volunteer-based data are opportunistic and lack a structured sampling strategy, resulting in geographic, temporal, observation quality, and socioeconomic, biases that stymie uptake of these models for downstream biodiversity monitoring tasks. Here we introduce DivShift North American West Coast (DivShift-NAWC), a curated dataset of almost 8 million iNaturalist plant images across the western coast of North America, for exploring the effects of these biases on deep learning model performance. We compare model performance across four known biases and observe that they indeed confound model performance. We suggest practical strategies for curating datasets to train deep learning models for monitoring climate change's impacts on the world's biodiversity., Comment: Accepted to NeurIPS 2024 Workshop on Tackling Climate Change with Machine Learning

Many modern software applications present numerous ethical concerns due to conflicts between users' values and companies' priorities. Intersectional communities, those with multiple marginalized identities, are disproportionately affected by these ethical issues, leading to legal, financial, and reputational issues for software companies, as well as real-world harm for intersectional users. Historically, the voices of intersectional communities have been systematically marginalized and excluded from contributing their unique perspectives to software design, perpetuating software-related ethical concerns. This work aims to fill the gap in research on intersectional users' software-related perspectives and provide software practitioners with a starting point to address their ethical concerns. We aggregated and analyzed the intersectional users' ethical concerns over time and developed a prioritization method to identify critical concerns. To achieve this, we collected posts from over 700 intersectional subreddits discussing software applications, utilized deep learning to identify ethical concerns in these posts, and employed state-of-the-art techniques to analyze their content in relation to time and priority. Our findings revealed that intersectional communities report \textit{critical} complaints related to cyberbullying, inappropriate content, and discrimination, highlighting significant flaws in modern software, particularly for intersectional users. Based on these findings, we discuss how to better address the ethical concerns of intersectional users in software development.

Investigation of students' perceptions and opinions on the use of generative artificial intelligence (GenAI) in education is a topic gaining much interest. Studies addressing this are typically conducted with large heterogeneous groups, at one moment in time. However, how students perceive and use GenAI tools can potentially depend on many factors, including their background knowledge, familiarity with the tools, and the learning goals and policies of the courses they are taking. In this study we explore how students following computing courses use GenAI for programming-related tasks across different programs and courses: Bachelor and Master, in courses in which learning programming is the learning goal, courses that require programming as a means to achieve another goal, and in courses in which programming is optional, but can be useful. We are also interested in changes over time, since GenAI capabilities are changing at a fast pace, and users are adopting GenAI increasingly. We conducted three consecutive surveys (fall `23, winter `23, and spring `24) among students of all computing programs of a large European research university. We asked questions on the use in education, ethics, and job prospects, and we included specific questions on the (dis)allowed use of GenAI tools in the courses they were taking at the time. We received 264 responses, which we quantitatively and qualitatively analyzed, to find out how students have employed GenAI tools across 59 different computing courses, and whether the opinion of an average student about these tools evolves over time. Our study contributes to the emerging discussion of how to differentiate GenAI use across different courses, and how to align its use with the learning goals of a computing course., Comment: Accepted to Koli Calling 24. Numbers in Table 1, row 1 updated

Late-stage Ca-sulfate-filled fractures are common on Mars. Notably, the Shenandoah formation in the western edge of Jezero crater preserves a variety of Ca-sulfate minerals in the fine-grained siliciclastic rocks explored by the Perseverance rover. However, the depositional environment and timing of the formation of these sulfates is unknown. To address this outstanding problem, we developed a new technique to map the crystal textures of these sulfates in situ at two stratigraphically similar locations in the Shenandoah formation, allowing us to constrain the burial depth and paleoenvironment at the time of their deposition. Our results suggest that some Ca-sulfate analyzed was formed at a burial depth greater than 80m, whereas Ca-sulfates present at another outcrop likely precipitated in a shallow-subsurface environment. These results indicate that samples collected for potential return to Earth at the two studied locations capture two different times and distinct chemical conditions in the depositional history of the Shenandoah formation providing multiple opportunities to evaluate surface and subsurface habitability.

The isotopic compositions of samples returned from Cb-type asteroid Ryugu and Ivuna-type (CI) chondrites are distinct from other carbonaceous chondrites, which has led to the suggestion that Ryugu and CI chondrites formed in a different region of the accretion disk, possibly around the orbits of Uranus and Neptune. We show that, like for Fe, Ryugu and CI chondrites also have indistinguishable Ni isotope anomalies, which differ from those of other carbonaceous chondrites. We propose that this unique Fe and Ni isotopic composition reflects different accretion efficiencies of small FeNi metal grains among the carbonaceous chondrite parent bodies. The CI chondrites incorporated these grains more efficiently, possibly because they formed at the end of the disk's lifetime, when planetesimal formation was also triggered by photoevaporation of the disk. Isotopic variations among carbonaceous chondrites may thus reflect fractionation of distinct dust components from a common reservoir, implying CI chondrites and Ryugu may have formed in the same region of the accretion disk as other carbonaceous chondrites., Comment: Published open access in Science Advances

We propose a convex controller synthesis framework for a large class of constrained linear systems, including those described by (deterministic and stochastic) partial differential equations and integral equations, commonly used in fluid dynamics, thermo-mechanical systems, quantum control, or transportation networks. Most existing control techniques rely on a (finite-dimensional) discrete description of the system, via ordinary differential equations. Here, we work instead with more general (infinite-dimensional) Hilbert spaces. This enables the discretization to be applied after the optimization (optimize-then-discretize). Using output-feedback SLS, we formulate the controller synthesis as a convex optimization problem. Structural constraints like sensor and communication delays, and locality constraints, are incorporated while preserving convexity, allowing parallel implementation and extending key SLS properties to infinite dimensions. The proposed approach and its benefits are demonstrated on a linear Boltzmann equation.

Neurosymbolic (NeSy) artificial intelligence describes the combination of logic or rule-based techniques with neural networks. Compared to neural approaches, NeSy methods often possess enhanced interpretability, which is particularly promising for biomedical applications like drug discovery. However, since interpretability is broadly defined, there are no clear guidelines for assessing the biological plausibility of model interpretations. To assess interpretability in the context of drug discovery, we devise a novel prediction task, called drug mechanism-of-action (MoA) deconvolution, with an associated, tailored knowledge graph (KG), MoA-net. We then develop the MoA Retrieval System (MARS), a NeSy approach for drug discovery which leverages logical rules with learned rule weights. Using this interpretable feature alongside domain knowledge, we find that MARS and other NeSy approaches on KGs are susceptible to reasoning shortcuts, in which the prediction of true labels is driven by "degree-bias" rather than the domain-based rules. Subsequently, we demonstrate ways to identify and mitigate this. Thereafter, MARS achieves performance on par with current state-of-the-art models while producing model interpretations aligned with known MoAs., Comment: Under review. 10 pages, 5 supplementary pages. Corresponding code is here: https://github.com/laurendelong21/MARS and here: https://github.com/laurendelong21/MoA-Net

Real-time supercomputing performance analysis is a critical aspect of evaluating and optimizing computational systems in a dynamic user environment. The operation of supercomputers produce vast quantities of analytic data from multiple sources and of varying types so compiling this data in an efficient matter is critical to the process. MIT Lincoln Laboratory Supercomputing Center has been utilizing the Unity 3D game engine to create a Digital Twin of our supercomputing systems for several years to perform system monitoring. Unity offers robust visualization capabilities making it ideal for creating a sophisticated representation of the computational processes. As we scale the systems to include a diversity of resources such as accelerators and the addition of more users, we need to implement new analysis tools for the monitoring system. The workloads in research continuously change, as does the capability of Unity, and this allows us to adapt our monitoring tools to scale and incorporate features enabling efficient replay of system wide events, user isolation, and machine level granularity. Our system fully takes advantage of the modern capabilities of the Unity Engine in a way that intuitively represents the real time workload performed on a supercomputer. It allows HPC system engineers to quickly diagnose usage related errors with its responsive user interface which scales efficiently with large data sets.

Comparing bridging annotations across coreference resources is difficult, largely due to a lack of standardization across definitions and annotation schemas and narrow coverage of disparate text domains across resources. To alleviate domain coverage issues and consolidate schemas, we compare guidelines and use interpretable predictive models to examine the bridging instances annotated in the GUM, GENTLE and ARRAU corpora. Examining these cases, we find that there is a large difference in types of phenomena annotated as bridging. Beyond theoretical results, we release a harmonized, subcategorized version of the test sets of GUM, GENTLE and the ARRAU Wall Street Journal data to promote meaningful and reliable evaluation of bridging resolution across domains., Comment: The Seventh Workshop on Computational Models of Reference, Anaphora and Coreference (CRAC 2024), EMNLP 2024 Workshop, 15 November 2024

Complex, learned motor behaviors involve the coordination of large-scale neural activity across multiple brain regions, but our understanding of the population-level dynamics within different regions tied to the same behavior remains limited. Here, we investigate the neural population dynamics underlying learned vocal production in awake-singing songbirds. We use Neuropixels probes to record the simultaneous extracellular activity of populations of neurons in two regions of the vocal motor pathway. In line with observations made in non-human primates during limb-based motor tasks, we show that the population-level activity in both the premotor nucleus HVC and the motor nucleus RA is organized on low-dimensional neural manifolds upon which coordinated neural activity is well described by temporally structured trajectories during singing behavior. Both the HVC and RA latent trajectories provide relevant information to predict vocal sequence transitions between song syllables. However, the dynamics of these latent trajectories differ between regions. Our state-space models suggest a unique and continuous-over-time correspondence between the latent space of RA and vocal output, whereas the corresponding relationship for HVC exhibits a higher degree of neural variability. We then demonstrate that comparable high-fidelity reconstruction of continuous vocal outputs can be achieved from HVC and RA neural latents and spiking activity. Unlike those that use spiking activity, however, decoding models using neural latents generalize to novel sub-populations in each region, consistent with the existence of preserved manifolds that confine vocal-motor activity in HVC and RA., Comment: 30 pages; 7 figures; 8 supplementary figures

Hundreds of exoplanets between 1-1.8 times the size of the Earth have been discovered on close in orbits. However, these planets show such a diversity in densities that some appear to be made entirely of iron, while others appear to host gaseous envelopes. To test this diversity in composition, we update the masses of 5 rocky exoplanets (HD 93963 A b, Kepler-10 b, Kepler-100 b, Kepler-407 b, and TOI-1444 b) and present the confirmation of a new planet (TOI-1011) using 187 high precision RVs from Gemini/MAROON-X and Keck/KPF. Our updated planet masses suggest compositions closer to that of the Earth than previous literature values for all planets in our sample. In particular, we report that two previously identified ``super-Mercuries'' (Kepler-100 b and HD 93963 A b) have lower masses that suggest less iron-rich compositions. We then compare the ratio of iron to rock-building species to the abundance ratios of those elements in their host stars. These updated planet compositions do not suggest a steep relationship between planet and host star compositions, contradictory to previous results, and suggest that planets and host stars have similar abundance ratios., Comment: Submitted to AJ 09/30/2024