2,350 results on '"Larsen, K. A."'
Search Results
2. Tracking ultrafast non-adiabatic dissociation dynamics of the deuterated water dication molecule.
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Iskandar, W., Rescigno, T. N., Orel, A. E., Larsen, K. A., Severt, T., Streeter, Z. L., Jochim, B., Griffin, B., Call, D., Davis, V., McCurdy, C. W., Lucchese, R. R., Williams, J. B., Ben-Itzhak, I., Slaughter, D. S., and Weber, T.
- Abstract
We applied reaction microscopy to elucidate fast non-adiabatic dissociation dynamics of deuterated water molecules after direct photo-double ionization at 61 eV with synchrotron radiation. For the very rare D
+ + O+ + D breakup channel, the particle momenta, angular, and energy distributions of electrons and ions, measured in coincidence, reveal distinct electronic dication states and their dissociation pathways via spin–orbit coupling and charge transfer at crossings and seams on the potential energy surfaces. Notably, we could distinguish between direct and fast sequential dissociation scenarios. For the latter case, our measurements reveal the geometry and orientation of the deuterated water molecule with respect to the polarization vector that leads to this rare 3-body molecular breakup channel. Aided by multi-reference configuration-interaction calculations, the dissociation dynamics could be traced on the relevant potential energy surfaces and particularly their crossings and seams. This approach also unraveled the ultrafast time scales governing these processes. [ABSTRACT FROM AUTHOR]- Published
- 2024
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3. Non-Equilibrium Dynamics in Two-Color, Few-Photon Dissociative Excitation and Ionization of D$_2$
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Slaughter, D. S., Sturm, F. P., Bello, R. Y., Larsen, K. A., Shivaram, N., McCurdy, C. W., Lucchese, R. R., Martin, L., Hogle, C. W., Murnane, M. M., Kapteyn, H. C., Ranitovic, P., and Weber, Th.
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Physics - Atomic Physics ,Physics - Chemical Physics ,Physics - Optics ,Quantum Physics - Abstract
D$_2$ molecules, excited by linearly cross-polarized femtosecond extreme ultraviolet (XUV) and near-infrared (NIR) light pulses, reveal highly structured D$^+$ ion fragment momenta and angular distributions that originate from two different 4-step dissociative ionization pathways after four photon absorption (1 XUV + 3 NIR). We show that, even for very low dissociation kinetic energy release $\le$~240~meV, specific electronic excitation pathways can be identified and isolated in the final ion momentum distributions. With the aid of {\it ab initio} electronic structure and time-dependent Schr\"odinger equation calculations, angular momentum, energy, and parity conservation are used to identify the excited neutral molecular states and molecular orientations relative to the polarization vectors in these different photoexcitation and dissociation sequences of the neutral D$_2$ molecule and its D$_2^+$ cation. In one sequential photodissociation pathway, molecules aligned along either of the two light polarization vectors are excluded, while another pathway selects molecules aligned parallel to the light propagation direction. The evolution of the nuclear wave packet on the intermediate \Bstate electronic state of the neutral D$_2$ molecule is also probed in real time., Comment: 11 pages including 6 figures
- Published
- 2021
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4. Efficiency of charge transfer in changing the dissociation dynamics of OD+ transients formed after the photo-fragmentation of D2O.
- Author
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Iskandar, W., Rescigno, T. N., Orel, A. E., Severt, T., Larsen, K. A., Streeter, Z. L., Jochim, B., Griffin, B., Call, D., Davis, V., McCurdy, C. W., Lucchese, R. R., Williams, J. B., Ben-Itzhak, I., Slaughter, D. S., and Weber, Th.
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CHARGE transfer ,TRANSIENTS (Dynamics) ,COLLISION induced dissociation ,DAUGHTER ions ,ENERGY function - Abstract
We present an investigation of the relaxation dynamics of deuterated water molecules after direct photo-double ionization at 61 eV. We focus on the very rare D
+ + O+ + D reaction channel in which the sequential fragmentation mechanisms were found to dominate the dynamics. Aided by theory, the state-selective formation and breakup of the transient OD+ (a1 Δ, b1 Σ+ ) is traced, and the most likely dissociation path—OD+ : a1 Δ or b1 Σ+ → A3 Π → X3 Σ− → B3 Σ− —involving a combination of spin–orbit and non-adiabatic charge transfer transitions is determined. The multi-step transition probability of this complex transition sequence in the intermediate fragment ion is directly evaluated as a function of the energy of the transient OD+ above its lowest dissociation limit from the measured ratio of the D+ + O+ + D and competing D+ + D+ + O sequential fragmentation channels, which are measured simultaneously. Our coupled-channel time-dependent dynamics calculations reproduce the general trends of these multi-state relative transition rates toward the three-body fragmentation channels. [ABSTRACT FROM AUTHOR]- Published
- 2023
- Full Text
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5. Lifestyle in Pregnancy and Hypospadias in Sons: A Study of 85,923 Mother-Son Pairs from Two Danish Pregnancy Cohorts
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Kjersgaard CL, Arendt LH, Ernst A, Lindhard MS, Olsen J, Henriksen TB, Strandberg-Larsen K, and Ramlau-Hansen CH
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smoking ,prenatal exposures ,alcohol ,caffeine ,bmi ,birth defects ,Infectious and parasitic diseases ,RC109-216 - Abstract
Camilla Lomholt Kjersgaard,1 Linn Håkonsen Arendt,1,2 Andreas Ernst,1,3 Morten Søndergaard Lindhard,4,5 Jørn Olsen,1,6 Tine Brink Henriksen,5 Katrine Strandberg-Larsen,7 Cecilia Høst Ramlau-Hansen1 1Department of Public Health, Research Unit for Epidemiology, Aarhus University, Aarhus, Denmark; 2Department of Obstetrics and Gynecology, Horsens Regional Hospital, Horsens, Denmark; 3Department of Urology, Aarhus University Hospital, Aarhus, Denmark; 4Department of Pediatrics, Randers Regional Hospital, Randers, Denmark; 5Perinatal Epidemiology Research Unit, Department of Pediatrics, Aarhus University Hospital, Aarhus, Denmark; 6Department of Clinical Epidemiology, Aarhus University Hospital, Aarhus, Denmark; 7Department of Public Health, Section of Epidemiology, Copenhagen University, Copenhagen, DenmarkCorrespondence: Camilla Lomholt KjersgaardDepartment of Public Health, Research Unit for Epidemiology, Aarhus University, Bartholins Allé 2, Aarhus, 8000, DenmarkTel +45 40 19 44 38Email ck@ph.au.dkPurpose: Hypospadias is one of the most frequent male congenital malformations. It remains controversial whether maternal lifestyle during pregnancy may affects the risk of having a son with hypospadias, especially for smoking with many suggesting lower risk. We assessed the individual and joint associations between maternal cigarette smoking, pre-pregnancy body mass index (BMI), alcohol consumption, binge drinking, and caffeine consumption and occurrence of hypospadias in sons.Patients and Methods: This cohort study utilized the Danish National Birth Cohort and the Aarhus Birth Cohort, holding detailed information on lifestyle factors in early pregnancy between 1989 and 2012. The Danish health registers were used to identify boys with hypospadias, according to International Classification of Diseases. Potential confounders and covariates were identified by literature search and use of directed acyclic graphs. Missing data were handled by multiple imputation and Cox proportional hazards models were applied to analyse data.Results: In total, 85,923 live-born singleton boys were included in the study of whom 502 (0.6%) were diagnosed with hypospadias. Maternal smoking in early pregnancy was associated with lower occurrence of hypospadias. An increase of one cigarette smoked per day was associated with lower risk of having a son with hypospadias (adjusted hazard ratio (HR) 0.97 (95% confidence interval (CI) 0.94, 1.00)). However, sub-analyses suggested that the results may be prone to unadjusted confounding. We found no association between pre-pregnancy BMI, alcohol consumption, binge drinking, or caffeine consumption and hypospadias.Conclusion: Maternal smoking during pregnancy was associated with lower occurrence of hypospadias but we cannot exclude uncontrolled confounding. The other investigated maternal lifestyle factors were not associated with hypospadias in sons.Keywords: smoking, prenatal exposures, alcohol, caffeine, BMI, birth defects
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- 2022
6. Urban environment in pregnancy and postpartum depression: An individual participant data meta-analysis of 12 European birth cohorts
- Author
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Cadman, T, Strandberg-Larsen, K, Calas, L, Christiansen, M, Culpin, I, Dadvand, P, de Castro, M, Foraster, M, Fossati, S, Guxens, M, Harris, JR, Hillegers, M, Jaddoe, V, Lee, Y, Lepeule, J, el Marroun, H, Maule, M, McEachen, R, Moccia, C, Nader, J, Nieuwenhuijsen, M, Nybo Andersen, AM, Pearson, R, Swertz, M, Vafeiadi, M, Vrijheid, M, Wright, J, Lawlor, DA, Pedersen, M, Cadman, T, Strandberg-Larsen, K, Calas, L, Christiansen, M, Culpin, I, Dadvand, P, de Castro, M, Foraster, M, Fossati, S, Guxens, M, Harris, JR, Hillegers, M, Jaddoe, V, Lee, Y, Lepeule, J, el Marroun, H, Maule, M, McEachen, R, Moccia, C, Nader, J, Nieuwenhuijsen, M, Nybo Andersen, AM, Pearson, R, Swertz, M, Vafeiadi, M, Vrijheid, M, Wright, J, Lawlor, DA, and Pedersen, M
- Abstract
Background: Urban environmental exposures associate with adult depression, but it is unclear whether they are associated to postpartum depression (PPD). Objectives: We investigated associations between urban environment exposures during pregnancy and PPD. Methods: We included women with singleton deliveries to liveborn children from 12 European birth cohorts (N with minimum one exposure = 30,772, analysis N range 17,686–30,716 depending on exposure; representing 26–46 % of the 66,825 eligible women). We estimated maternal exposure during pregnancy to ambient air pollution with nitrogen dioxide (NO2) and particulate matter (PM2.5 and PM10), road traffic noise (Lden), natural spaces (Normalised Difference Vegetation Index; NDVI, proximity to major green or blue spaces) and built environment (population density, facility richness and walkability). Maternal PPD was assessed 3–18 months after birth using self-completed questionnaires. We used adjusted logistic regression models to estimate cohort-specific associations between each exposure and PPD and combined results via meta-analysis using DataSHIELD. Results: Of the 30,772 women included, 3,078 (10 %) reported having PPD. Exposure to PM10 was associated with slightly increased odds of PPD (adjusted odd ratios (OR) of 1.08 [95 % Confidence Intervals (CI): 0.99, 1.17] per inter quartile range increment of PM10) whilst associations for exposure to NO2 and PM2.5 were close to null. Exposure to high levels of road traffic noise (≥65 dB vs. < 65 dB) was associated with an OR of 1.12 [CI: 0.95, 1.32]. Associations between green spaces and PPD were close to null; whilst proximity to major blue spaces was associated with increased risk of PPD (OR 1.12, 95 %CI: 1.00, 1.26). All associations between built environment and PPD were close to null. Multiple exposure models showed similar results. Discussion: The study findings suggest that exposure to PM10, road traffic noise and blue spaces in pregnancy may increase PPD risk, howev
- Published
- 2024
7. Extreme drought impacts have been underestimated in grasslands and shrublands globally
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Smith, M.D., Wilkins, K.D., Holdrege, M.C., Wilfahrt, P., Collins, S.L., Knapp, A.K., Sala, O.E., Dukes, J.S., Phillips, R.P., Yahdjian, L., Gherardi, L.A., Ohlert, T., Beier, C., Fraser, L.H., Jentsch, A., Loik, M.E., Maestre, F.T., Power, S.A., Yu, Q., Felton, A.J., Munson, S.M., Luo, Y., Abdoli, H., Abedi, M., Alados, C.L., Alberti, J., Alon, M., An, H., Anacker, B., Anderson, M., Auge, Harald, Bachle, S., Bahalkeh, K., Bahn, M., Batbaatar, A., Bauerle, T., Beard, K.H., Behn, K., Beil, I., Biancari, L., Blindow, I., Bondaruk, V.F., Borer, E.T., Bork, E.W., Bruschetti, C.M., Byrne, K.M., Cahill jr., J.F., Calvo, D.A., Carbognani, M., Cardoni, A., Carlyle, C.N., Castillo-Garcia, M., Chang, S.X., Chieppa, J., Cianciaruso, M.V., Cohen, O., Cordeiro, A.L., Cusack, D.F., Dahlke, S., Daleo, P., D'Antonio, C.M., Dietterich, L.H., Doherty, T.S., Dubbert, M., Ebeling, A., Eisenhauer, N., Fischer, F.M., Forte, T.G.W., Gebauer, T., Gozalo, B., Greenville, A.C., Guidoni-Martins, K.G., Hannusch, H.J., Haugum, S.V., Hautier, Y., Hefting, M., Henry, H.A.L., Hoss, D., Ingrisch, J., Iribarne, O., Isbell, F., Johnson, Y., Jordan, S., Kelly, E.F., Kimmel, K., Kreyling, J., Kröel-Dulay, G., Kröpfl, A., Kübert, A., Kulmatiski, A., Lamb, E.G., Steenberg Larsen, K., Larson, J., Lawson, J., Leder, C.V., Linstädter, A., Liu, J., Liu, S., Lodge, A., Longo, G., Smith, M.D., Wilkins, K.D., Holdrege, M.C., Wilfahrt, P., Collins, S.L., Knapp, A.K., Sala, O.E., Dukes, J.S., Phillips, R.P., Yahdjian, L., Gherardi, L.A., Ohlert, T., Beier, C., Fraser, L.H., Jentsch, A., Loik, M.E., Maestre, F.T., Power, S.A., Yu, Q., Felton, A.J., Munson, S.M., Luo, Y., Abdoli, H., Abedi, M., Alados, C.L., Alberti, J., Alon, M., An, H., Anacker, B., Anderson, M., Auge, Harald, Bachle, S., Bahalkeh, K., Bahn, M., Batbaatar, A., Bauerle, T., Beard, K.H., Behn, K., Beil, I., Biancari, L., Blindow, I., Bondaruk, V.F., Borer, E.T., Bork, E.W., Bruschetti, C.M., Byrne, K.M., Cahill jr., J.F., Calvo, D.A., Carbognani, M., Cardoni, A., Carlyle, C.N., Castillo-Garcia, M., Chang, S.X., Chieppa, J., Cianciaruso, M.V., Cohen, O., Cordeiro, A.L., Cusack, D.F., Dahlke, S., Daleo, P., D'Antonio, C.M., Dietterich, L.H., Doherty, T.S., Dubbert, M., Ebeling, A., Eisenhauer, N., Fischer, F.M., Forte, T.G.W., Gebauer, T., Gozalo, B., Greenville, A.C., Guidoni-Martins, K.G., Hannusch, H.J., Haugum, S.V., Hautier, Y., Hefting, M., Henry, H.A.L., Hoss, D., Ingrisch, J., Iribarne, O., Isbell, F., Johnson, Y., Jordan, S., Kelly, E.F., Kimmel, K., Kreyling, J., Kröel-Dulay, G., Kröpfl, A., Kübert, A., Kulmatiski, A., Lamb, E.G., Steenberg Larsen, K., Larson, J., Lawson, J., Leder, C.V., Linstädter, A., Liu, J., Liu, S., Lodge, A., and Longo, G.
- Abstract
Climate change is increasing the frequency and severity of short-term (~1 y) drought events—the most common duration of drought—globally. Yet the impact of this intensification of drought on ecosystem functioning remains poorly resolved. This is due in part to the widely disparate approaches ecologists have employed to study drought, variation in the severity and duration of drought studied, and differences among ecosystems in vegetation, edaphic and climatic attributes that can mediate drought impacts. To overcome these problems and better identify the factors that modulate drought responses, we used a coordinated distributed experiment to quantify the impact of short-term drought on grassland and shrubland ecosystems. With a standardized approach, we imposed ~a single year of drought at 100 sites on six continents. Here we show that loss of a foundational ecosystem function—aboveground net primary production (ANPP)—was 60% greater at sites that experienced statistically extreme drought (1-in-100-y event) vs. those sites where drought was nominal (historically more common) in magnitude (35% vs. 21%, respectively). This reduction in a key carbon cycle process with a single year of extreme drought greatly exceeds previously reported losses for grasslands and shrublands. Our global experiment also revealed high variability in drought response but that relative reductions in ANPP were greater in drier ecosystems and those with fewer plant species. Overall, our results demonstrate with unprecedented rigor that the global impacts of projected increases in drought severity have been significantly underestimated and that drier and less diverse sites are likely to be most vulnerable to extreme drought.
- Published
- 2024
8. Reading tea leaves worldwide: Decoupled drivers of initial litter decomposition mass‐loss rate and stabilization
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Sarneel, J., Hefting, M., Sandén, T., van den Hoogen, J., Routh, D., Adhikari, B., Alatalo, J., Aleksanyan, A., Althuizen, I., Alsafran, M., Atkins, J., Augusto, L., Aurela, M., Azarov, A., Barrio, I., Beier, C., Bejarano, M., Benham, S., Berg, B., Bezler, N., Björnsdóttir, K., Bolinder, M., Carbognani, M., Cazzolla Gatti, R., Chelli, S., Chistotin, M., Christiansen, C., Courtois, P., Crowther, T., Dechoum, M., Djukic, I., Duddigan, S., Egerton‐Warburton, L., Fanin, N., Fantappiè, M., Fares, S., Fernandes, G., Filippova, N., Fliessbach, A., Fuentes, D., Godoy, R., Grünwald, T., Guzmán, G., Hawes, J., He, Y., Hero, J.‐M., Hess, L., Hogendoorn, K., Høye, T., Jans, W., Jónsdóttir, I., Keller, S., Kepfer‐Rojas, S., Kuz'menko, N., Larsen, K., Laudon, H., Lembrechts, J., Li, J., Limousin, J.‐M., Lukin, S., Marques, R., Marín, C., McDaniel, M., Meek, Q., Merzlaya, G., Michelsen, A., Montagnani, L., Mueller, P., Murugan, R., Myers‐Smith, I., Nolte, S., Ochoa‐Hueso, R., Okafor, B., Okorkov, V., Onipchenko, V., Orozco, M., Parkhurst, T., Peres, C., Petit Bon, M., Petraglia, A., Pingel, M., Rebmann, C., Scheffers, B., Schmidt, I., Scholes, M., Sheffer, E., Shevtsova, L., Smith, S., Sofo, A., Stevenson, P., Strouhalová, B., Sundsdal, A., Sühs, R., Tamene, G., Thomas, H., Tolunay, D., Tomaselli, M., Tresch, S., Tucker, D., Ulyshen, M., Valdecantos, A., Vandvik, V., Vanguelova, E., Verheyen, K., Wang, X., Yahdjian, L., Yumashev, X., Keuskamp, J., Sarneel, J., Hefting, M., Sandén, T., van den Hoogen, J., Routh, D., Adhikari, B., Alatalo, J., Aleksanyan, A., Althuizen, I., Alsafran, M., Atkins, J., Augusto, L., Aurela, M., Azarov, A., Barrio, I., Beier, C., Bejarano, M., Benham, S., Berg, B., Bezler, N., Björnsdóttir, K., Bolinder, M., Carbognani, M., Cazzolla Gatti, R., Chelli, S., Chistotin, M., Christiansen, C., Courtois, P., Crowther, T., Dechoum, M., Djukic, I., Duddigan, S., Egerton‐Warburton, L., Fanin, N., Fantappiè, M., Fares, S., Fernandes, G., Filippova, N., Fliessbach, A., Fuentes, D., Godoy, R., Grünwald, T., Guzmán, G., Hawes, J., He, Y., Hero, J.‐M., Hess, L., Hogendoorn, K., Høye, T., Jans, W., Jónsdóttir, I., Keller, S., Kepfer‐Rojas, S., Kuz'menko, N., Larsen, K., Laudon, H., Lembrechts, J., Li, J., Limousin, J.‐M., Lukin, S., Marques, R., Marín, C., McDaniel, M., Meek, Q., Merzlaya, G., Michelsen, A., Montagnani, L., Mueller, P., Murugan, R., Myers‐Smith, I., Nolte, S., Ochoa‐Hueso, R., Okafor, B., Okorkov, V., Onipchenko, V., Orozco, M., Parkhurst, T., Peres, C., Petit Bon, M., Petraglia, A., Pingel, M., Rebmann, C., Scheffers, B., Schmidt, I., Scholes, M., Sheffer, E., Shevtsova, L., Smith, S., Sofo, A., Stevenson, P., Strouhalová, B., Sundsdal, A., Sühs, R., Tamene, G., Thomas, H., Tolunay, D., Tomaselli, M., Tresch, S., Tucker, D., Ulyshen, M., Valdecantos, A., Vandvik, V., Vanguelova, E., Verheyen, K., Wang, X., Yahdjian, L., Yumashev, X., and Keuskamp, J.
- Abstract
The breakdown of plant material fuels soil functioning and biodiversity. Currently, process understanding of global decomposition patterns and the drivers of such patterns are hampered by the lack of coherent large-scale datasets. We buried 36,000 individual litterbags (tea bags) worldwide and found an overall negative correlation between initial mass-loss rates and stabilization factors of plant-derived carbon, using the Tea Bag Index (TBI). The stabilization factor quantifies the degree to which easy-to-degrade components accumulate during early-stage decomposition (e.g. by environmental limitations). However, agriculture and an interaction between moisture and temperature led to a decoupling between initial mass-loss rates and stabilization, notably in colder locations. Using TBI improved mass-loss estimates of natural litter compared to models that ignored stabilization. Ignoring the transformation of dead plant material to more recalcitrant substances during early-stage decomposition, and the environmental control of this transformation, could overestimate carbon losses during early decomposition in carbon cycle models.
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- 2024
- Full Text
- View/download PDF
9. Accurate model and ensemble refinement using cryo-electron microscopy maps and Bayesian inference
- Author
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Hoff, S. E., primary, Thomasen, F. E., additional, Lindorff-Larsen, K., additional, and Bonomi, M., additional
- Published
- 2023
- Full Text
- View/download PDF
10. Growth performance of Rainbow Trout in reservoir tributaries and implications for steelhead growth potential above Skagit River dams
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Jensen, B. L., primary, Johnson, R. C., additional, Duda, J. J., additional, Ostberg, C. O., additional, Code, T. J., additional, Mclean, J. H., additional, Stenberg, K. D., additional, Larsen, K. A., additional, Hoy, M. S., additional, and Beauchamp, D. A., additional
- Published
- 2023
- Full Text
- View/download PDF
11. Process evaluation of The Breastfeeding Trial. What factors impact the intervention delivery?
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Rossau, H K, primary, Gadeberg, A K, additional, Strandberg-Larsen, K, additional, Nilsson, IMS, additional, and Villadsen, S F, additional
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- 2023
- Full Text
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12. Enhanced Cellular Uptake Of Phenamil Through Inclusion Complex With Histidine Functionalized β-Cyclodextrin As Penetrative Osteoinductive Agent
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Jahed V, Vasheghani-Farahani E, Bagheri F, Zarrabi A, Fink T, and Lambertsen Larsen K
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Phenamil ,β-cyclodextrin ,Inclusion Complex ,Histidine ,Cell penetration ,Bone Regeneration. ,Medicine (General) ,R5-920 - Abstract
Vahid Jahed,1 Ebrahim Vasheghani-Farahani,1 Fatemeh Bagheri,2 Ali Zarrabi,3 Trine Fink,4 Kim Lambertsen Larsen5 1Biomedical Engineering Division, Faculty of Chemical Engineering, Tarbiat Modares University, Tehran, Iran; 2Department of Biotechnology, Faculty of Chemical Engineering, Tarbiat Modares University, Tehran, Iran; 3Sabanci University Nanotechnology Research and Application Center (SUNUM), Tuzla 34956, Istanbul, Turkey; 4Department of Health Science and Technology, Faculty of Health, Aalborg University, Aalborg, Denmark; 5Department of Chemistry and Bioscience, Faculty of Chemistry, Aalborg University, Aalborg, DenmarkCorrespondence: Ebrahim Vasheghani-FarahaniBiomedical Engineering Division, Faculty of Chemical Engineering, Tarbiat Modares University, Jalal ale Ahmad Highway, P.O. Box 14115-114, Tehran, IranTel +98 21 8288 3338Email evf@modares.ac.irKim Lambertsen LarsenDepartment of Chemistry and Bioscience, Faculty of Chemistry, Aalborg University, 7H Fredrik Bajers Vej — 1340, Aalborg 9220, DenmarkTel +45 9 940 8521Email kll@bio.aau.dkBackground: Phenamil (PH) is a small molecule that induces bone formation through upregulation of the TRB3 gene in the bone-regeneration process. β-Cyclodextrins (βCDs) with hydrophilic surfaces and a relatively hydrophobic cavity can form inclusion complexes with primarily hydrophobic small molecules such as PH, and increase their apparent solubility and dissolution rate. The hydrophilic surface of βCDs prevents their interaction with the hydrophobic lipids of the cell membrane for penetration. Therefore, binding of penetrative groups, such as lysine, arginine, and histidine (His), to βCDs for cell penetration is required.Aim: The aim of this study was to investigate the effect of His-conjugated βCD on cellular uptake of PH for bone differentiation.Methods: In this study, His-βCDs were synthesized and used to prepare an inclusion complex of His-βCD-PH. A hydroxypropyl–βCD-PH (HP-βCD-PH) inclusion complex for increasing PH solubility without a penetrative group was prepared for comparison. 3-D geometry of βCD derivatives and PH-inclusion complexes was investigated by Fourier-transform infrared spectroscopy and molecular docking. Alizarin red staining and real-time PCR were performed to compare bone differentiation of His-βCD-PH and HP-βCD-PH.Results: The results suggested that the benzene ring of PH was inserted into the wide side of both His-βCD and HP-βCD. Alizarin red staining at 14 days postculture in the presence of His-βCD-PH at total concentration of 50 μM for PH showed that bone-matrix mineralization increased significantly compared with free PH and HP-βCD-PH. Real-time PCR confirmed this result, and showed gene expression increased significantly (OPN 1.84-fold, OCN 1.69-fold) when stem cells were cultured with His-βCD-PH.Conclusion: The overall results indicated that His-βCD-PH is a promising carrier for osteoinductive PH with possible penetration ability and sustained release that reduces BMP2 consumption for differentiation of mesenchymal stem cells to bone tissue.Keywords: phenamil, β-cyclodextrin, inclusion complex, histidine, cell penetration, bone regeneration
- Published
- 2019
13. Using geographic information systems to make transparent and weighted decisions on pit development: incorporation of interactive economic, environmental, and social factors
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Risk, C., Zamaria, S.A., Chen, J., Ke, J.J., Morgan, G., Taylor, J., Larsen, K., and Cowling, S.A.
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DMTI Spatial Inc. -- Rankings ,Hydrogeology -- Electric properties -- Environmental aspects -- Social aspects -- Economic aspects ,Computer services industry -- Rankings ,Decision-making -- Electric properties -- Environmental aspects -- Social aspects -- Economic aspects ,Sand, gravel and stone industry -- Rankings ,Geographic information systems -- Rankings ,Lakes -- Social aspects -- Environmental aspects -- Electric properties -- Economic aspects ,Permeability -- Environmental aspects -- Electric properties -- Social aspects -- Economic aspects ,Computer services industry ,Geographic information system ,Earth sciences - Abstract
A geographic information systems platform with an analytical hierarchy process was employed to rank the importance of different economic, environmental, and social factors involved in choosing the location of an open-pit operation within a small county in the province of Ontario, Canada. Weighted environmental (hydraulic conductivity, soil types, slope, and elevation) and social (distance from population zones) overlays were combined and then compared against a map of potential sources of sand and gravel deposits (economic factor) to locate the most ideal location for a pit. This resulted in the delineation of four ideal locations for the operation in the north of the county. Here, permeability values are low and there are no major population centres. The decision-making tool developed here has the ability to adapt to changing social and (or) environmental criteria and could greatly improve transparency in natural resource management decisions. The largest limitation to this decision-making tool is that it treats all water sources as equal. As research continues to identify different ecosystem services (i.e., acid neutralization, low contamination source waters, and high biological diversity) for different types of waterways, a ranking scheme could be added along the lines of high versus low conservation priorities for nonrenewable freshwater lake and river resources. Key words: geographic information systems (GIS), analytical hierarchy process (AHP), aggregate resources, environmental policy, decision-making tool, freshwater ecosystems. Une plateforme de systemes d'information geographique jumelee à un processus de hierarchie analytique a ete utilisee pour classer l'importance de differents facteurs economiques, environnementaux et sociaux intervenant dans le choix de l'emplacement d'une exploitation à ciel ouvert dans un petit comte de la province de l'Ontario (Canada). Des couches d'attributs environnementaux (conductivite hydraulique, types de sols, pente et elevation) et sociaux (distance de centres de population) ponderes ont ete combinees, puis comparees à une carte de sources potentielles de depots de sable et de gravier (facteur economique) pour situer l'emplacement le plus ideal pour une carriere. Cela a permis de cerner quatre emplacements ideaux pour l'exploitation dans le nord du comte. Dans ce secteur, les valeurs de permeabilite sont faibles et il n'y a pas de grands centres de population. L'outil decisionnel mis au point est peut s'adapter à des criteres sociaux et environnementaux changeants et pourrait rehausser considerablement la transparence de decisions touchant à la gestion de ressources naturelles. La plus importante limite de cet outil decisionnel est qu'il traite toutes les sources d'eau de la même maniere. Avec la poursuite de travaux de recherche visant à cerner les differents services ecosystemiques (c.-à-d. neutralisation d'acide, sources d'eau peu contaminees et forte biodiversite) pour differents types de voies navigables, un schema de classement pourrait s'ajouter qui reposerait sur la priorite de conservation pour les ressources d'eau douce non renouvelables de lacs et de rivieres. [Traduit par la Redaction] Mots-cles: systemes d'information geographique (SIG), processus de hierarchie analytique (PHA), ressources en granulat, politique environnementale, outil decisionnel, ecosystemes d'eau douce., Introduction As the world's population continues to grow, more natural resources will have to be extracted from the planet to maintain high standards of living (Fan et al. 2017; Chartres [...]
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- 2020
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14. Poly-ε-caprolactone scaffold for the reinforcement of stapled small intestinal anastomoses: a randomized experimental study
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Larsen, K. D., Westerholt, M., Madsen, G. I., Le, D. Q. S., Qvist, Niels, and Ellebæk, M. B.
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- 2019
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15. Efficiency of charge transfer in changing the dissociation dynamics of OD+ transients formed after the photo-fragmentation of D2O
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Iskandar, W., primary, Rescigno, T. N., additional, Orel, A. E., additional, Severt, T., additional, Larsen, K. A., additional, Streeter, Z. L., additional, Jochim, B., additional, Griffin, B., additional, Call, D., additional, Davis, V., additional, McCurdy, C. W., additional, Lucchese, R. R., additional, Williams, J. B., additional, Ben-Itzhak, I., additional, Slaughter, D. S., additional, and Weber, Th., additional
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- 2023
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16. Evidence for Very Early Planetesimal Formation and 26Al/27Al Heterogeneity in the Protoplanetary Disk
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Connelly, J. N., primary, Bollard, J., additional, Amsellem, E., additional, Schiller, M., additional, Larsen, K. K., additional, and Bizzarro, M., additional
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- 2023
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17. Fine Root Growth and Vertical Distribution in Response to Elevated CO₂, Warming and Drought in a Mixed Heathland–Grassland
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Arndal, M. F., Tolver, A., Larsen, K. S., Beier, C., and Schmidt, I. K.
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- 2018
18. Labor augmentation during birth and later cognitive ability in young adulthood
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Stokholm L, Talge NM, Christensen GT, Juhl M, Mortensen LH, and Strandberg-Larsen K
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Labor augmentation ,cognitive ability ,oxytocin ,Børge Priens Prøve ,siblings ,Infectious and parasitic diseases ,RC109-216 - Abstract
Lonny Stokholm,1 Nicole M Talge,2 Gunhild Tidemann Christensen,3–5 Mette Juhl,6 Laust Hvas Mortensen,1,7Katrine Strandberg-Larsen1 1Section of Epidemiology, Department of Public Health, University of Copenhagen, Copenhagen, Denmark; 2Department of Epidemiology and Biostatistics, Michigan State University, Michigan, USA; 3Department of Public Health, University of Southern Denmark, Danish Aging Research Center, Odense, Denmark; 4Center for Clinical Research and Prevention, Bispebjerg and Frederiksberg Hospital, Capital Region, Copenhagen, Denmark; 5Department of Public Health, University of Copenhagen, Copenhagen, Denmark; 6Department of Midwifery, Copenhagen University College, Copenhagen, Denmark; 7Methods and Analysis, Statistics Denmark, Copenhagen, Denmark Purpose: Synthetic oxytocin for labor augmentation during birth has been linked to negative neurodevelopment effects in children. We examined whether maternal labor augmentation was associated with lower cognitive ability in young adulthoods. Patients and methods: We identified 330,107 individuals (96.6% were men), with noninduced labor and with a cognitive ability test score, the Børge Priens Prøve (BPP) score, from draft board examinations in 1995–2015 (mean age, 18.8 years). Information on maternal labor augmentation was ascertained from the Danish Medical Birth Register, and we calculated mean differences in the BPP score according to maternal labor augmentation. We repeated our analyses in a sub-sample of siblings to control for unmeasured familial confounding. Results: Maternal labor augmentation was not associated with any noticeable decline in cognitive ability. However, the difference in the mean BPP score for exposure to maternal labor augmentation varied according to maternal parity, as the mean difference in BPP scores increased with increasing parity, in nulliparous: mean difference=–0.14 (95% CI=–0.23 to –0.04); in maternal parity 4+: mean difference=–1.21 (95% CI=–2.905 to –0.37). The sibling analysis showed little influence of shared familial factors on the association. Conclusion: The mean BPP was slightly lower among labor augmented compared to nonaugmented and with an increasing difference with increasing parity. However, the differences were small and could not be considered of any clinical relevance. Furthermore, the sibling analyses suggested little confounding by familial factors. Keywords: Børge Priens Prøve, dystocia, neurodevelopment, oxytocin, siblings
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- 2018
19. Decrease in heathland soil labile organic carbon under future atmospheric and climatic conditions
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Thaysen, E. M., Reinsch, S., Larsen, K. S., and Ambus, P.
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- 2017
20. WS12.01 Early growth in Danish children with cystic fibrosis since 2000
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Bader-Larsen, K., primary, Faurholt-Jepsen, D., additional, Olesen, H.V., additional, Pressler, T., additional, Skov, M., additional, and Olsen, M.F., additional
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- 2023
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21. Cohort description:measures of early-life behaviour and later psychopathology in the LifeCycle Project — EU Child Cohort Network
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Nader, J. L. (Johanna L.), López-Vicente, M. (Mònica), Julvez, J. (Jordi), Guxens, M. (Monica), Cadman, T. (Tim), Elhakeem, A. (Ahmed), Järvelin, M.-R. (Marjo-Riitta), Rautio, N. (Nina), Miettunen, J. (Jouko), El Marroun, H. (Hanan), Melchior, M. (Maria), Heude, B. (Barbara), Charles, M.-A. (Marie-Aline), Yang, T. C. (Tiffany C.), McEachan, R. R. (Rosemary R. C.), Wright, J. (John), Polanska, K. (Kinga), Carson, J. (Jennie), Lin, A. (Ashleigh), Rauschert, S. (Sebastian), Huang, R.-C. (Rae-Chi), Popovic, M. (Maja), Richiardi, L. (Lorenzo), Corpeleijn, E. (Eva), Cardol, M. (Marloes), Mikkola, T. M. (Tuija M.), Eriksson, J. G. (Johan G.), Salika, T. (Theodosia), Inskip, H. (Hazel), Vinther, J. L. (Johan Lerbech), Strandberg-Larsen, K. (Katrine), Gürlich, K. (Kathrin), Grote, V. (Veit), Koletzko, B. (Berthold), Vafeiadi, M. (Marina), Sunyer, J. (Jordi), Jaddoe, V. W. (Vincent W. V.), Harris, J. R. (Jennifer R.), Nader, J. L. (Johanna L.), López-Vicente, M. (Mònica), Julvez, J. (Jordi), Guxens, M. (Monica), Cadman, T. (Tim), Elhakeem, A. (Ahmed), Järvelin, M.-R. (Marjo-Riitta), Rautio, N. (Nina), Miettunen, J. (Jouko), El Marroun, H. (Hanan), Melchior, M. (Maria), Heude, B. (Barbara), Charles, M.-A. (Marie-Aline), Yang, T. C. (Tiffany C.), McEachan, R. R. (Rosemary R. C.), Wright, J. (John), Polanska, K. (Kinga), Carson, J. (Jennie), Lin, A. (Ashleigh), Rauschert, S. (Sebastian), Huang, R.-C. (Rae-Chi), Popovic, M. (Maja), Richiardi, L. (Lorenzo), Corpeleijn, E. (Eva), Cardol, M. (Marloes), Mikkola, T. M. (Tuija M.), Eriksson, J. G. (Johan G.), Salika, T. (Theodosia), Inskip, H. (Hazel), Vinther, J. L. (Johan Lerbech), Strandberg-Larsen, K. (Katrine), Gürlich, K. (Kathrin), Grote, V. (Veit), Koletzko, B. (Berthold), Vafeiadi, M. (Marina), Sunyer, J. (Jordi), Jaddoe, V. W. (Vincent W. V.), and Harris, J. R. (Jennifer R.)
- Abstract
Background: The EU LifeCycle Project was launched in 2017 to combine, harmonise, and analyse data from more than 250,000 participants across Europe and Australia, involving cohorts participating in the EU-funded LifeCycle Project. The purpose of this cohort description is to provide a detailed overview over the major measures within mental health domains that are available in 17 European and Australian cohorts participating in the LifeCycle Project. Methods: Data on cognitive, behavioural and psychological development has been collected on participants from birth until adulthood through questionnaire and medical data. We developed an inventory of the available data by mapping individual instruments, domain types, and age groups, providing the basis for statistical harmonization across mental health measures. Results: The mental health data in LifeCycle contain longitudinal and cross-sectional data for ages 0–18+ years, covering domains across a wide range of behavioural and psychopathology indicators and outcomes (including executive function, depression, ADHD and cognition). These data span a unique combination of qualitative data collected through behavioural/cognitive/mental health questionnaires and examination, as well as data from biological samples and indices in the form of brain imaging (MRI, foetal ultrasound) and DNA methylation data. Harmonized variables on a subset of mental health domains have been developed, providing statistical equivalence of measures required for longitudinal meta-analyses across instruments and cohorts. Conclusions: Mental health data harmonized through the LifeCycle project can be used to study life course trajectories and exposure-outcome models that examine early life risk factors for mental illness and develop predictive markers for later-life disease.
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- 2023
22. Associations between placental DNA methylation and emotional and behavioral outcomes in preschoolers:insights from the EDEN Mother-Child Cohort study
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Nakamura, A., Broseus, L., Tost, J., Vaiman, D., Martins, S., Keyes, K., Bonello, K., Fekom, M., Strandberg-larsen, K., Sutter-dallay, A.-l., Melchior, M., Heude, B., Lepeule, J., Nakamura, A., Broseus, L., Tost, J., Vaiman, D., Martins, S., Keyes, K., Bonello, K., Fekom, M., Strandberg-larsen, K., Sutter-dallay, A.-l., Melchior, M., Heude, B., and Lepeule, J.
- Abstract
Introduction Behavioral (externalizing) and emotional (internalizing) problems were showed to be associated with the prenatal environment. Changes in placental DNA methylation was identified as a relevant potential mechanism of such association. Objectives We aimed to explore the associations between placental DNA methylation and child behavior in order to explore pathways that could link prenatal exposures to child behavior. Methods Data including 441 children of 3 years of age from the EDEN mother-child cohort. Child behavior assessed using the Strengths and Difficulties Questionnaire (SDQ). Both hypotheses-driven and exploratory analyses (including epigenome-wide association studies (EWAS) and differentially methylated regions (DMR) analyses) were conducted. The analyses were adjusted for confounding and technical factors and estimated placental cell composition. All the p-values were corrected using a false discovery rate (FDR) procedure for multiple tests. Results In the hypothesis-driven analysis, cg26703534 (AHRR), was significantly associated with emotional problems (pFDR = 0.03). In the exploratory analyses, cg09126090 (pFDR = 0.04) and cg10305789 (PPP1R16B; pFDR < 0.01) were significantly associated with peer-relationship problems and 33 DMRs were significantly associated with at least one of the SDQ subscales. Placental DNA methylation showed more associations with internalizing than externalizing symptoms, especially among girls. DMRs tented to include highly methylated CpGs. Conclusions This study investigated for the first time the associations between placental DNA methylation and internalizing and externalizing symptoms in preschoolers. Further analyses, such as consortium meta-analyses would be necessary to confirm and extend our results.
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- 2023
23. Plant YTHDF proteins are direct effectors of antiviral immunity against an N6-methyladenosine-containing RNA virus
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Martínez-Pérez, M, Aparicio, Frederic, Arribas-Hernández, L, Tankmar, M.D, Rennie, S, von Bülow, S, Lindorff-Larsen, K, Brodersen, P, Pallas, Vicente, Martínez-Pérez, M, Aparicio, Frederic, Arribas-Hernández, L, Tankmar, M.D, Rennie, S, von Bülow, S, Lindorff-Larsen, K, Brodersen, P, and Pallas, Vicente
- Abstract
In virus–host interactions, nucleic acid-directed first lines of defense that allow viral clearance without compromising growth are of paramount importance. Plants use the RNA interference pathway as a basal antiviral immune system, but additional RNA-based mechanisms of defense also exist. The infectivity of a plant positive-strand RNA virus, alfalfa mosaic virus (AMV), relies on the demethylation of viral RNA by the recruitment of the cellular N6-methyladenosine (mA) demethylase ALKBH9B, but how demethylation of viral RNA promotes AMV infection remains unknown. Here, we show that inactivation of the Arabidopsis cytoplasmic YT521-B homology domain (YTH)-containing mA-binding proteins ECT2, ECT3, and ECT5 is sufficient to restore AMV infectivity in partially resistant alkbh9b mutants. We further show that the antiviral function of ECT2 is distinct from its previously demonstrated function in the promotion of primordial cell proliferation: an ect2 mutant carrying a small deletion in its intrinsically disordered region is partially compromised for antiviral defense but not for developmental functions. These results indicate that the mA-YTHDF axis constitutes a novel branch of basal antiviral immunity in plants.
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- 2023
24. Analyses Supporting Snoopi: a P-band Reflectometry Demonstration
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Bindlish, R, Larsen, K, Nold, B, Raymond, J. C, Banting, R, Spencer, D. A, Vega, M. A, Piepmeier, J, Kim, S, Shah, R, Garrison, J. L, and Shah, Rashmi
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- 2020
25. Analyses Supporting Snoopi: a P-band Reflectometry Demonstration
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Shah, Rashmi, Garrison, J. L, Shah, R, Kim, S, Piepmeier, J, Vega, M. A, Spencer, D. A, Banting, R, Raymond, J. C, Nold, B, Larsen, K, and Bindlish, R
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- 2020
26. Tanaidomorphan Systematics: Is It Obsolete?
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Larsen, K. and Wilson, G. D. F.
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- 1998
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27. Definition of a Technology Validation Mission for P-band Reflectometry using Signals of Opportunity
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Garrison, J. L, Piepmeier, Jeffrey R, Shah, R, Vega, M. A, Spencer, D. A, Banting, R, Raymond, J. C, Nold, B, Larsen, K, and Bindlish, Rajat
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Earth Resources And Remote Sensing - Abstract
Root-Zone Soil Moisture (RZSM) (moisture profile in the top meter of soil) and Snow Water Equivalent (SWE) (total snow pack water content) are identified as priority target variables in the ESAS 2017 decadal survey [1] with critical roles in hydrology and water management. RZSM estimates are vital for understanding multiple Earth system processes and forecasting (for example, droughts [2]). Simultaneous knowledge of surface and RZSM could enable a breakthrough in estimating key unobserved hydrologic fluxes and reduce uncertainty in net ecosystem exchange (NEE), carbon balance [3] discharge estimates, and crop yield forecasts [4] .With the high albedo and insulating properties of snow, monitoring, SWE accumulation would provide a key constraint on the potential runoff during spring ablation while monitoring SWE disappearance rates would provide a key constraint on SWE partition into runoff vs. infiltration/recharge. [5] demonstrated that knowledge of early-spring SWE generally contributes most to streamflow forecast skill in the Western U.S. SWE is also a source of water storage that provides the water resources during spring snowmelt. Despite such potentially transformative contributions, accurate RZSM and SWE measurements are unattainable with current technology. While active/passive L-band methods (e.g. SMAP, SMOS) can reliably retrieve surface soil moisture in the top 5 cm of soil [6], [7]. RZSM estimates are only available through model assimilation of brightness temperatures with a radiative transfer and land surface models [8]. SWE estimation uses multi-frequency passive microwave techniques (e.g. [9]-[11]), which have significant problems with deeper snow and in forested and mountainous environments [12]. Signals of opportunity (SoOp) in P-band (200-400 MHz) is a new remote sensing technique with the capability of estimating both essential hydrologic variables, RZSM and SWE, circumventing many of the aforementioned limitations under all weather conditions day and night. SoOp is the re-utilization of existing powerful satellite transmissions within bands allocated for communications or navigation. P-band SoOp sensitivity to soil moisture has been demonstrated in an airborne experiment over Oklahoma in 2016 [13]. Recent theory [14] and experiments [15] have also confirmed that the reflection coefficient phase is proportional to SWE.
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- 2019
28. Associations between placental DNA methylation and emotional and behavioral outcomes in preschoolers: insights from the EDEN Mother-Child Cohort study
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Nakamura, A., primary, Broseus, L., additional, Tost, J., additional, Vaiman, D., additional, Martins, S., additional, Keyes, K., additional, Bonello, K., additional, Fekom, M., additional, Strandberg-Larsen, K., additional, Sutter-Dallay, A.-L., additional, Melchior, M., additional, Heude, B., additional, and Lepeule, J., additional
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- 2023
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29. Acute neurovascular effects of psilocybin administration in healthy humans: Implications for cerebral blood flow measurements using arterial spin labelling
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Larsen, K., primary, Lindberg, U., additional, Ozenne, B., additional, McCulloch, D.E.W., additional, Armand, S., additional, Madsen, M.K., additional, Johansen, A., additional, Stenbæk, D.S., additional, Knudsen, G.M., additional, and Fisher, P.M., additional
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- 2023
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30. Atomic autoionization in the photo-dissociation of super-excited deuterated water molecules fragmenting into D+ + O+ + D
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Iskandar, W., primary, Rescigno, T. N., additional, Orel, A. E., additional, Larsen, K. A., additional, Griffin, B., additional, Call, D., additional, Davis, V., additional, Jochim, B., additional, Severt, T., additional, Williams, J. B., additional, Ben-Itzhak, I., additional, Slaughter, D. S., additional, and Weber, Th., additional
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- 2023
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31. Irritable Bowel Syndrome and Upper Dyspepsia among the Elderly: A Study of Symptom Clusters in a Random 70 Year Old Population
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Kay, L., Jørgensen, T., Schultz-Larsen, K., and Davidsen, M.
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- 1996
32. Obstetric Synthetic Oxytocin Use and Subsequent Hyperactivity/Inattention Problems in Danish Children
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Stokholm, L., Juhl, M., Lønfeldt, N.N., Mikkelsen, S.H., Obel, C., and Strandberg-Larsen, K.
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- 2019
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33. Atomic autoionization in the photo-dissociation of super-excited deuterated water molecules fragmenting into D+ + O+ + D.
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Iskandar, W., Rescigno, T. N., Orel, A. E., Larsen, K. A., Griffin, B., Call, D., Davis, V., Jochim, B., Severt, T., Williams, J. B., Ben-Itzhak, I., Slaughter, D. S., and Weber, Th.
- Abstract
We present the relaxation dynamics of deuterated water molecules via autoionization, initiated by the absorption of a 61 eV photon, producing the very rare D
+ + O+ + D breakup channel. We employ the COLd target recoil ion momentum spectroscopy method to measure the 3D momenta of the ionic fragments and emitted electrons from the dissociating molecule in coincidence. We interpret the results using the potential energy surfaces extracted from multi-reference configuration interaction calculations. The measured particle energy distributions can be related to a super-excited monocationic state located above the double ionization threshold of D2 O. The autoionized electron energy shows a sharp distribution centered around 0.5 eV, which is a signature of the atomic oxygen autoionization occurring in the direct and sequential dissociation processes of D2 O+ * at a large internuclear distance. In this way, an O+ radical fragment and a low-energy electron are created, both of which can trigger secondary reactions in their environment. [ABSTRACT FROM AUTHOR]- Published
- 2023
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34. Multi-modal intervention improved oral intake in hospitalized patients. A one year follow-up study
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Holst, M., Beermann, T., Mortensen, M.N., Skadhauge, L.B., Lindorff-Larsen, K., and Rasmussen, H.H.
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- 2015
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35. Computationally designed thioredoxin subjected to stability optimizing mutations.
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Norrild, R.K., primary, Johansson, K.E., additional, O'Shea, C., additional, Lindorff-Larsen, K., additional, Winther, J.R., additional, and Morth, J.P., additional
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- 2022
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36. Cryo-EM structure of human NKCC1 (TM domain)
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Nissen, P., primary, Fenton, R., additional, Neumann, C., additional, Lindtoft Rosenbaek, L., additional, Kock Flygaard, R., additional, Habeck, M., additional, Lykkegaard Karlsen, J., additional, Wang, Y., additional, Lindorff-Larsen, K., additional, Gad, H., additional, Hartmann, R., additional, and Lyons, J., additional
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- 2022
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37. Smoking during pregnancy and children’s emotional and behavioural trajectories
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Fekom, M, primary, Bonello, K, additional, Gomajee, R, additional, Ibanez, G, additional, Martin, S, additional, Keyes, K, additional, Nakamura, A, additional, Lepeule, J, additional, Strandberg-Larsen, K, additional, and Melchior, M, additional
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- 2022
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38. Symptomatic oral lesions may be associated with contact allergy to substances in oral hygiene products
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Larsen, K. R., Johansen, J. D., Reibel, J., Zachariae, C., and Pedersen, A. M. L.
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- 2017
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39. Quantifying global soil carbon losses in response to warming
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Crowther, T. W., Todd-Brown, K. E. O., Rowe, C. W., Wieder, W. R., Carey, J. C., Machmuller, M. B., Snoek, B. L., Fang, S., Zhou, G., Allison, S. D., Blair, J. M., Bridgham, S. D., Burton, A. J., Carrillo, Y., Reich, P. B., Clark, J. S., Classen, A. T., Dijkstra, F. A., Elberling, B., Emmett, B. A., Estiarte, M., Frey, S. D., Guo, J., Harte, J., Jiang, L., Johnson, B. R., Krel-Dulay, G., Larsen, K. S., Laudon, H., Lavallee, J. M., Luo, Y., Lupascu, M., Ma, L. N., Marhan, S., Michelsen, A., Mohan, J., Niu, S., Pendall, E., Peuelas, J., Pfeifer-Meister, L., Poll, C., Reinsch, S., Reynolds, L. L., Schmidt, I. K., Sistla, S., Sokol, N. W., Templer, P. H., Treseder, K. K., Welker, J. M., and Bradford, M. A.
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Global warming -- Research ,Soil research ,Soil carbon -- Research ,Environmental issues ,Science and technology ,Zoology and wildlife conservation - Abstract
Author(s): T. W. Crowther (corresponding author) [1, 2]; K. E. O. Todd-Brown [3]; C. W. Rowe [2]; W. R. Wieder [4, 5]; J. C. Carey [6]; M. B. Machmuller [7]; [...]
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- 2016
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40. Prediction of non-recovery from ventilator-demanding acute respiratory failure, ARDS and death using lung damage biomarkers: data from a 1200-patient critical care randomized trial
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Jensen, Jens-Ulrik S., Itenov, Theis S., Thormar, Katrin M., Hein, Lars, Mohr, Thomas T., Andersen, Mads H., Løken, Jesper, Tousi, Hamid, Lundgren, Bettina, Boesen, Hans Christian, Johansen, Maria E., Ostrowski, Sisse R., Johansson, Pär I., Grarup, Jesper, Vestbo, Jørgen, Lundgren, Jens D., Steensen, M., Thornberg, K., Bestle, M., Strange, D., Lauritsen, A. Ø., Søe-Jensen, P., Reiter, N., Drenck, N. E., Fjeldborg, P., Fox, Z., Kjær, J., Kristensen, D., Rasmussen, M. B., Hallas, C. S.v., Zacho, M., Østergaard, C., Petersen, P. L., Hougaard, S., Mantoni, T., Nebrich, L., Bendtsen, A., Andersen, L. H., Bærentzen, F., Eversbusch, Andreas, Bømler, B., Martusevicius, R., Nielsen, T., Bådstøløkken, P. M., Grevstad, U., Hallas, P., Lindhardt, A., Galle, T., Graeser, K., Hohwu-Christensen, E., Gregersen, P., Pedersen, L. M., Rye, I., Cordtz, J., Madsen, K. R., Kirkegaard, P. R. C., Findsen, L., Nielsen, L. H., Pedersen, D. H., Andersen, J. H., Albrechtsen, C., Jacobsen, A., Jansen, T., Jensen, A. G., Jørgensen, H. H., Vazin, M., Lipsius, L., Skielboe, M., Thage, B., Thoft, C., Uldbjerg, M., Anderlo, E., Engsig, M., Hani, F., Jacobsen, R. B., Mulla, L., Skram, U., Waldau, T., Faber, T., Andersen, B., Gillesberg, I., Christensen, A., Hartmann, C., Albret, R., Dinesen, D. S., Gani, K., Ibsen, M., Petersen, J. A., Carl, P., Gade, E., Solevad, D., Heiring, C., Jørgensen, M., Ekelund, K., Afshari, A., Hammer, N., Bitsch, M., Hansen, J. S., Wamberg, C., Clausen, T. D., Winkel, R., Huusom, J., Buck, D. L., Grevstad, U., Lenz, K., Mellado, P., Karacan, H., Hidestål, J., Høgagard, J., Højbjerg, J., Højlund, J., Hestad, S., Østergaard, M., Wesche, N., Nielsen, S. A., Christensen, H., Blom, H., Jensen, C. H., Nielsen, K., Holler, N. G., Rossau, C. D., Glæemose, M., Wranér, M. B., Thomsen, C. B., Rasmussen, B., Lund-Rasmussen, C., Bech, B., Bjerregaard, K., Spliid, L., Nielsen, L. L. W., Larsen, K. M., Goldinger, M., Illum, D., Jessen, C., Christiansen, A., Berg, A., Elkmann, T., Pedersen, J. A. K., Simonsen, M., Joensen†, H., Alstrøm, H., Svane, C., Engquist, A., and For The Procalcitonin And Survival Study (PASS) Group
- Published
- 2016
- Full Text
- View/download PDF
41. 612 Changes in weight and body composition after the introduction of elexacaftor/tezacaftor/ivacaftor in Danish people with cystic fibrosis.
- Author
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Bader-Larsen, K., Faurholt-Jepsen, D., Leo-Hansen, C., Henriksen, E., Bryrup, T., Qvist, T., Skov, M., Jensen-Fangel, S., Olesen, H., Pressler, T., and Olsen, M.
- Subjects
- *
BODY weight , *BODY composition , *DANES , *CYSTIC fibrosis - Published
- 2024
- Full Text
- View/download PDF
42. Cryo-EM structure of phophorylated Drs2p-Cdc50p in a PS and ATP-bound E2P state
- Author
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Timcenko, M., primary, Wang, Y., additional, Lyons, J.A., additional, Nissen, P., additional, and Lindorff-Larsen, K., additional
- Published
- 2022
- Full Text
- View/download PDF
43. Fever and infections during pregnancy and psychosis-like experiences in the offspring at age 11. A prospective study within the Danish National Birth Cohort
- Author
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Dreier, J. W., Berg-Beckhoff, G., Andersen, A. M. N., Susser, E., Nordentoft, M., and Strandberg-Larsen, K.
- Published
- 2018
- Full Text
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44. NEW SPECIES OF THE GENUS ZEUXO (PERACARIDA, TANAIDACEA)
- Author
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LARSEN, K.
- Published
- 2014
45. Prenatal exposure to alcohol, and gender differences on child mental health at age seven years
- Author
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Niclasen, J, Niclasen, Janni, Andersen, A M Nybo, Teasdale, T W, and Strandberg-Larsen, K
- Published
- 2014
46. 03. Is ethnicity an appropriate measure of health care marginalization?: A systematic review and meta-analysis of the outcomes of diabetic foot ulceration in the Aboriginal population
- Author
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Johnson, G., Vergis, A., Unger, B., Park, J., Gillman, L., Hickey, K., Pace, D., Azin, A., Guidolin, K., Lam-Tin-Cheung, K., Chadi, S., Quereshy, F., Catton, J., Rubin, B., Bell, J., Marangos, J., Heesters, A., Stuart-McEwan, T., Shariff, F., Wright, F., Ahmed, N., Nadler, A., Hallet, J., Gentles, J., Chen, L., Hwang, H., Parapini, M., Hirpara, D., Sidhu, R., Scott, T., Karimuddin, A., Guo, R., Nguyen, A., Osborn, J., Wiseman, S., Nabata, K., Ertel, E., Lenet, T., Baker, L., Park, L., Vered, M., Zahrai, A., Shorr, R., Davis, A., McIsaac, D., Tinmouth, A., Fergusson, D., Martel, G., Rummel, S., Stefic-Cubic, M., Stewart, M., Melck, A., McKechnie, T., Anpalagan, T., Ichhpuniani, S., Lee, Y., Ramji, K., Eskicioglu, C., Zhu, A., Deng, S., Greene, B., Tsang, M., Palter, V., Jayaraman, S., Mann, A., Tittley, J., Cadeddu, M., Nguyen, M., Madani, A., Pasternak, J., Hong, D., Qu, L., Istl, A., Tang, E., Gray, D., Zuckerman, J., Coburn, N., Callum, J., McLeod, R., Pearsall, E., Lin, Y., Turgeon, A., Mahar, A., Kammili, A., Kriviraltcheva-Kaneva, P., Lee, L., Cools-Lartigue, J., Ferri, L., Mueller, C., Haas, B., Tillman, B., Guttman, M., Chesney, T., Zuk, V., Hsu, A., Chan, W., Vasdev, R., D’Souza, K., Huynh, C., Ling, L. Cadili J., Warburton, R., Hameed, M., Glass, L., Williamson, H., Murphy, P., Leslie, K., Hawel, J., Kerr, L., Zablotny, S., Roldan, H., He, W., Jiang, X., Zheng, B., Fiore, J., Feldman, L., Fried, G., Valanci, S., Balvardi, S., Cipolla, J., Kaneva, P., Demyttenaere, S., Boutros, M., Alhashemi, M., Miles, A., Purich, K., Verhoeff, K., Shapiro, J., Bigam, D., Kung, J., Fecso, A., Mosko, J., Skubleny, D., Hamilton, P., Ghosh, S., Widder, S., Schiller, D., Do, U., El Kefraoui, C., Pook, M., Barone, N., Montgomery, H., Nguyen-Powanda, P., Rajabiyazdi, F., Elhaj, H., Lapointe-Gagner, M., Olleik, G., Antoun, A., Safa, N., Di Lena, E., Meterissian, S., Meguerditchian, A., Lee, F., Baldini, G., Serrano Aybar, P.E., Parpia, S., Ruo, L., Tywonek, K., Lee, S., O’Neill, C., Faisal, N., Alfayyadh, A., Gundayao, M., Meyers, B.M., Habashi, R., Kruse, C., Levin, M., Aldrich, K., Grantcharov, T., Langerman, A., Forbes, H., Anantha, R., Fawcett, V., Hetherington, A., Pravong, V., Gervais, M., Rakovich, G., Selvam, R., Hu, R., Musselman, R., Raiche, I., Moloo, H., Liu, R., Elnahas, A., Alkhamesi, N., Alnumay, A., Schlachta, C., Walser, E., Zhang, C., Cristancho, S., Ott, M., Lee, A., Niu, B., Balaa, F., Gawad, N., Ren, K., Qiu, Y., Hamann, K., How, N., Leveille, C., Davidson, A., Eqbal, A., Sardiwalla, Y., Korostensky, M., Lee, E., Yang, I., Muaddi, H., Stukel, T., de Mestral, C., Nathens, A., Karanicolas, P., Frigault, J., Lemieux, S., Breton, D., Bouchard, P., Bouchard, A., Grégoire, R., Letarte, F., Bouchard, G., Drolet, S., Avoine, S., Gagné, J., Thibault, C., Jutras Bouthillette, N., Gosselin, M., Rosenzveig, A., Stuleanu, T., Jarrar, A., Kolozsvari, N., Skelhorne-Gross, G., Nenshi, R., Jerath, A., Gomez, D., Singh, K., Amir, T., Liu, E., Farquharson, S., Mao, R., Lan, L., Yan, J., Allard-Coutu, A., Mierzwa, A., Tin, R., Brisebois, R., Bradley, N., Wigen, R., Hartford, L., Van Koughnett, J., Vogt, K., Hilsden, R., Parry, N., Allen, L., Raskin, R., Jones, J., Neumann, K., Dwyer, C., Strickland, M., O’Dochartaigh, D., Lobay, K., Kabaroff, A., Chang, E., Sun, W., Beck, J., Davidson, J., Jones, S., Van Hooren, T., Schmitz, E., El Hafid, M., Dang, J., Mocanu, V., Lutzak, G., Sultanian, R., Wong, C., Karmali, S., Petrera, M., Pickell, M., Auer, R., Patro, N., Li, B., Wilson, H., Jogiat, U., Switzer, N., Li, C., Al Hinai, A., Cieply, A., Hawes, H., Joos, E., Saleh, A., Engels, P., Drung, J., Pang, G., Kwong, M., Ellsmere, J., Chang, D., Hutter, M., Spence, R., Abou Khalil, M., Vasilevsky, C., Morin, N., Longtin, Y., Liberman, S., Montpetit, P., Poirier, M., Mukherjee, K., Sebajang, H., Younan, R., Schwenter, F., De Broux, E., Larsen, K., Beckett, A., Nantais, J., Kay, J., Lohre, R., Ayeni, O., Goel, D., de SA, D., He, R., Hylton, D., Bedard, E., Johnson, S., Laing, B., Valji, A., Hanna, W., Turner, S., Akhtar-Danesh, G., Akhtar-Danesh, N., Shargall, Y., Gupta, V., Kidane, B., Limbachia, J., Sullivan, K., Farrokhyar, F., Leontiadis, G., Patel, Y., Churchill, I., Xie, F., Seely, A., Spicer, J., Yasufuku, K., Beauchamp, M., Wald, J., Mbuagbaw, L., Agzarian, J., Finley, C., Fahim, C., Abbas, M., Olaiya, O., Begum, H., Ednie, A., Palma, D., Warner, A., Malthaner, R., Fortin, D., Qiabi, M., Nayak, R., Nguyen, T., Louie, A., Rodrigues, G., Yaremko, B., Laba, J., Inculet, R., Alaichi, J., Mador, B., Lai, H., White, J., Kim, M., Darling, G., Rousseau, M., Samarasinghe, Y., Lee, M., Thiru, L., Levine, O., Juergens, R., Brogly, S., Li, W., Lougheed, D., Petsikas, D., Mistry, N., Gatti, A., Abdul, S., Anestee, C., Gilbert, S., Sundaresan, S., Villeneuve, P., Maziak, D., Razzak, R., Ashrafi, A., Tregobov, N., Hassanzadeh, N., Stone, S., Panjwani, A., Bong, T., Bond, R., Hafizi, A., De Meo, M., Rayes, R., Milette, S., Vagai, M., Usatii, M., Chandrasekaran, A., Giannias, B., Bourdeau, F., Sangwan, V., Bertos, N., Moraes, C., Huang, S., Quail, D., Walsh, L., Camilleri-Broet, S., Fiset, P., Bilgic, E., Quaiattini, A., Maurice-Ventouris, M., Najmeh, S., Esther, L., Lu, J., Malhan, R., Brophy, S., Brennan, K., French, D., Resende, V., Momtazi, M., Solaja, O., Sisson, D., Donahoe, L., Bedard, P., Hansen, A., De Perrot, M., Alghamedi, A., Simone, A., Huang, J., Murthy, S., Lin, J., Li, H., Crowther, M., Linkins, L., Lau, E., Schneider, L., Douketis, J., Greenberg, B., Allen-Avodabo, C., Davis, L., Zhao, H., Sirois, C., Mulder, D., Al Rawahi, A., Aftab Abdul, S., Nguyen, D., Anstee, C., Delic, E., Sasewich, H., Islam, T., Low, D., Humer, M., Le Nguyen, D., Kay, M., Shayegan, B., Adili, A., Kaafarani, M., Chouiali, F., Muthukrishnan, N., Maleki, F., Ovens, K., Gold, M., Sorin, M., Falutz, R., Forghani, R., Hunka, N., Kennedy, R., Bigsby, R., Bharadwaj, S., Gowing, S., Pearce, K., Jones, D., Kumar, S., Gingrich, M., Ahmadzai, Z., Thavorn, K., Namavarian, A., Mohammed, A., Uddin, S., Behzadi, A., Brar, A., Peters, E., Buduhan, G., Tan, L., Srinathan, S., Levy, J., Ringash, J., Sutradhar, R., Robinson, M., Bednarek, L., Wang, H., MacDonald, D., Graham, K., Enns, S., Tan, A., Bruinooge, A., Poole, E., Pascoe, C., Karakach, T., Halayko, A., Fang, B., Birch, D., Singh, H., Hershorn, O., Hochman, D., Helewa, R., Robertson, R., Cahill, C., Lipson, M., Afzal, A., Maclean, A., Roen, S., Buie, W., Chu, M., Amin, N., Jaffer, H., Rebello, R., Doumouras, A., Hajjar, R., Oliero, M., Cuisiniere, T., Fragoso, G., Calvé, A., Djediai, S., Annabi, B., Richard, C., Santos, M., Zhou, Y., Dodd), S., Ring, B., Yuan, Y., Garfinkle, R., Dell’Aniello, S., Bhatnagar, S., Ghitulescu, G., Faria, J., Brassard, P., Salama, E., Amar-Zifkin, A., Talwar, G., Daniel, R., AlSulaim, H., Alqahtani, M., Al-Masrouri, S., Chen, A., Patel, A., Brissette, V., Al Busaidi, N., Moon, J., Demian, M., MacRae, H., Alam, F., Holland, J., Cwintal, M., Rigas, G., Pang, A., Marinescu, D., Brown, C., Raval, M., Phang, P., Ghuman, A., Li, M., Muncner, S., Mihajlovic, I., Dykstra, M., Snelgrove, R., Monton, O., Smith, A., AlAamer, O., AlSelaim, N., AlMalki, M., Al-osail, A., Ruxton, R., Manuel, P., Mohamed, F., Motamedi, M.K., Serahati, S., Rajendran, L., Phang, T., Caminsky, N., Alavi, K., Paquette, I., MacLean, T., Wexner, S., Steele, S., Patel, S., Bordeianou, L., Sylla, P., Bayat, Z., Kennedy, E., Victor, C., Govindarajan, A., Liang, J., Roy, H., Baig, Z., Karimmudin, A., Gill, D., Ginther, N., Alrashid, F., Wiseman, V., Zhang, L., MacDonald, P., Merchant, S.M., Wattie Barnett, K., Caycedo-Marulanda, A., Patel, S.V., Harra, Z., Hegagi, M., Alghaithi, N., Papillon, E., Kasteel, N., Kaur, G., Bindra, S., Malhotra, A., Graham, C., MacLean, A., Beck, P., Jijon, H., Ferraz, J., Szwimer, R., Merchant, S., Kong, W., Gyawali, B., Hanna, T., Chung, W., Nanji, S., Booth, C., Li, V., Awan, A., Serrano, P., Jacobson, M., Chanco, M., Wen, V., Singh, N., Peiris, L., Pasieka, J., Ghatage, P., Buie, D., Bouchard-Fortier, A., Mack, L., Marini, W., Zheng, W., Swallow, C., Reedijk, M., DiPasquale, A., Prus-Czrnecka, Z., Delmar, L., Gagnon, N., Villiard, R., Martel, É., Cadrin-Chênevert, A., Ledoux, É., Racicot, C., Mysuria), S., Bazzarelli, A., Pao, J., Zhang, M., McKevitt, E., Kuusk, U., Van Laeken, N., Bovill, E., Isaac, K., Dingee, C., Hunter-Smith, A., Cuthbert, C., Fergus, K., Barbera, L., Efegoma, Y., Howell, D., Isherwood, S., Levasseur, N., Scheer, A., Simmons, C., Srikantham, A., Temple-Orberle, C., Xu, Y., Metcalfe, K., Quan, M., Alqaydi, A., la, J., Digby, G., Brind’Amour, A., Sidéris, L., Dubé, P., De Guerke, L., Fortin, S., Auclair, M., Trilling, B., Tremblay, J., Di Lena, É., Hopkins), B., Wong, S., Hopkins, B., Dumitra, S., Mysuria, S., Kapur, H., Bazarelli, A., Cadili, L., DeGirolamo, K., Ng, D., Ali, A., Eymae, D., Lee, K., Brar, S., Conner, J., Magalhaes, M., Allen, K., Baliski, C., Cyr, D., Sari, A., Messenger, D., Driman, D., Assarzadegan, N., Juda, A., Brar, M., Kirsch, R., Lamontagne, A., Gamache, Y., Mardinger, C., Lee, C., Duckworth, R., Brindle, M., Fraulin, F., Austen, L., Kortbeek, J., Hyndman, M., Jamjoum, G., Langer, S., Yuan Xu, Y., Kong, S., Lim, D., Retrouvey, H., Kerrebijn, I., Butler, K., O’Neill, A., Cil, T., Zhong, T., Hofer, S., McCready, D., Look Hong, N., Skipworth, J., Mah, A., Desai, S., Chung, S., Scudamore, C., Segedi, M., Vasilyeva, E., Li, J., Kim, P., Deprato, A., Dajani, K., Gilbert, R., Smoot, R., Tzeng, C., Rocha, F., Yohanathan, L., Cleary, S., Bertens, K., Reyna-Sepulveda, F., Badrudin, D., Gala-Lopez, B., Hanna, N., Wei, X., Kaliwal, Y., Wei, A., Henault, D., Barrette, B., Pelletier, S., Thebault, P., Beaudry-Simoneau, E., Rong, Z., Plasse, M., Dagenais, A. Roy M., Létourneau, R., Lapointe, R., Vandenbroucke-Menu, F., Nguyen, B., Soucy, G., Turcotte, S., Lemke, M., Waugh, E., Quan, D., Skaro, A., Lund, M., Glinka, J., Jada, G., Daza, J., Msallak, H., Zhang, B., Workneh, A., Faisal, S., Faisal, R., Fabbro, M., Gu, C., Claassen, M., Sapisochin, G., Breadner, D., Welch, S., Webb, A., Lester, E., Shapiro, A., Eurich, D., Essaji, Y., Shrader, H., Nayyar, A., Suraju, M., Williams-Perez, S., Ear, P., Chan, C., Smith, V., Rivers-Bowerman, M., Costa, A., Stueck, A., Campbell, N., Allen, S., Mir, Z., Golding, H., McKeown, S., Flemming, J., Groome, P., Djerboua, M., Elbekri, S., Girard, E., Morency-Potvin, P., Dagenais, M., Roy, A., Letourneau, R., Simoneau, E., Zuker, N., Oakley, M., Chartrand, G., Misheva, B., Bendavid, Y., Melland-Smith, M., Smith, L., Tan, J., Kahn, U., McLean, C., Fortin, M., Paré, X., Doyon, A., Keshavjee, S., Schwenger, K., Yadav, J., Fischer, S., Jackson, T., Allard, J., Okrainec, A., Anvari, S., Lovrics, O., Aditya, I., Khondker, A., Walsh, M., Hardy, K., Romanescu, R., Deaninck, F., Linton, J., Fowler-Woods, M., Fowler-Woods, A., Shingoose, G., Zmudzinski, M., Cloutier, Z., Archer, V., Shiroky, J., Abu Halimah, J., Boudreau, V., Marcil, G., Hardy-Henry, A., Lin, W., Hagen, J., and Connell, M.
- Subjects
Abstracts ,Canadian Association of General Surgeons ,Canadian Hernia Society ,Canada ,Canadian Association of Thoracic Surgeons ,Canadian Hepato-Pancreato-Biliary Association ,Humans ,Canadian Society of Surgical Oncology ,Canadian Association of Bariatric Physicians and Surgeons ,Canadian Society of Colon and Rectal Surgeons - Published
- 2022
47. Mechanism of Low-Temperature NOx Storage for Reducing NOx Cold Start Emission
- Author
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Stakheev, A. Yu., Mashkovsky, I. S., Bragina, G. O., Baeva, G. N., Telegina, N. S., Malmstrøm Larsen, K., Kustov, A. L., and Thøgersen, J. R.
- Published
- 2016
- Full Text
- View/download PDF
48. Module based training improves and sustains surgical skills: a randomised controlled trial
- Author
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Carlsen, C. G., Lindorff-Larsen, K., Funch-Jensen, P., Lund, L., Konge, L., and Charles, P.
- Published
- 2015
- Full Text
- View/download PDF
49. BUILDING THE RESILIENCE OF MELBOURNE’S FOOD SYSTEM – A ROADMAP A Foodprint Melbourne Report May 2022
- Author
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Carey, R, Murphy, M, Alexandra, L, Sheridan, J, Larsen, K, McGill, E, Carey, R, Murphy, M, Alexandra, L, Sheridan, J, Larsen, K, and McGill, E
- Abstract
This report from the Foodprint Melbourne research project presents a roadmap of strategies and policy approaches for strengthening the resilience of Melbourne’s food system to shocks and stresses. It focuses particularly on shocks and stresses related to climate change and pandemic, but also considers underlying food system stresses, such as high levels of food waste and declining supplies of the natural resources that underpin food production. The combined effects of these shocks and stresses undermine the resilience of food systems, drive up food prices and increase food insecurity. The report identifies six key areas of opportunity for action to strengthen the resilience of Melbourne’s food system to future shocks and stresses.
- Published
- 2022
50. A structural biology community assessment of AlphaFold2 applications.
- Author
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Akdel, M, Pires, DEV, Pardo, EP, Jänes, J, Zalevsky, AO, Mészáros, B, Bryant, P, Good, LL, Laskowski, RA, Pozzati, G, Shenoy, A, Zhu, W, Kundrotas, P, Serra, VR, Rodrigues, CHM, Dunham, AS, Burke, D, Borkakoti, N, Velankar, S, Frost, A, Basquin, J, Lindorff-Larsen, K, Bateman, A, Kajava, AV, Valencia, A, Ovchinnikov, S, Durairaj, J, Ascher, DB, Thornton, JM, Davey, NE, Stein, A, Elofsson, A, Croll, TI, Beltrao, P, Akdel, M, Pires, DEV, Pardo, EP, Jänes, J, Zalevsky, AO, Mészáros, B, Bryant, P, Good, LL, Laskowski, RA, Pozzati, G, Shenoy, A, Zhu, W, Kundrotas, P, Serra, VR, Rodrigues, CHM, Dunham, AS, Burke, D, Borkakoti, N, Velankar, S, Frost, A, Basquin, J, Lindorff-Larsen, K, Bateman, A, Kajava, AV, Valencia, A, Ovchinnikov, S, Durairaj, J, Ascher, DB, Thornton, JM, Davey, NE, Stein, A, Elofsson, A, Croll, TI, and Beltrao, P
- Abstract
Most proteins fold into 3D structures that determine how they function and orchestrate the biological processes of the cell. Recent developments in computational methods for protein structure predictions have reached the accuracy of experimentally determined models. Although this has been independently verified, the implementation of these methods across structural-biology applications remains to be tested. Here, we evaluate the use of AlphaFold2 (AF2) predictions in the study of characteristic structural elements; the impact of missense variants; function and ligand binding site predictions; modeling of interactions; and modeling of experimental structural data. For 11 proteomes, an average of 25% additional residues can be confidently modeled when compared with homology modeling, identifying structural features rarely seen in the Protein Data Bank. AF2-based predictions of protein disorder and complexes surpass dedicated tools, and AF2 models can be used across diverse applications equally well compared with experimentally determined structures, when the confidence metrics are critically considered. In summary, we find that these advances are likely to have a transformative impact in structural biology and broader life-science research.
- Published
- 2022
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