148 results on '"Larrea-Sebal, A."'
Search Results
2. Predictive Modeling and Structure Analysis of Genetic Variants in Familial Hypercholesterolemia: Implications for Diagnosis and Protein Interaction Studies
- Author
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Larrea-Sebal, Asier, Jebari-Benslaiman, Shifa, Galicia-Garcia, Unai, Jose-Urteaga, Ane San, Uribe, Kepa B., Benito-Vicente, Asier, and Martín, César
- Published
- 2023
- Full Text
- View/download PDF
3. OptiMo‐LDLr: An Integrated In Silico Model with Enhanced Predictive Power for LDL Receptor Variants, Unraveling Hot Spot Pathogenic Residues
- Author
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Asier Larrea‐Sebal, Iñaki Sasiain, Shifa Jebari‐Benslaiman, Unai Galicia‐Garcia, Kepa B. Uribe, Asier Benito‐Vicente, Irene Gracia‐Rubio, Harbil Bediaga‐Bañeres, Sonia Arrasate, Ana Cenarro, Fernando Civeira, Humberto González‐Díaz, and Cesar Martín
- Subjects
hot spot ,in silico ,LDLr ,predictive software ,Science - Abstract
Abstract Familial hypercholesterolemia (FH) is an inherited metabolic disease affecting cholesterol metabolism, with 90% of cases caused by mutations in the LDL receptor gene (LDLR), primarily missense mutations. This study aims to integrate six commonly used predictive software to create a new model for predicting LDLR mutation pathogenicity and mapping hot spot residues. Six predictive‐software are selected: Polyphen‐2, SIFT, MutationTaster, REVEL, VARITY, and MLb‐LDLr. Software accuracy is tested with the characterized variants annotated in ClinVar and, by bioinformatic and machine learning techniques all models are integrated into a more accurate one. The resulting optimized model presents a specificity of 96.71% and a sensitivity of 98.36%. Hot spot residues with high potential of pathogenicity appear across all domains except for the signal peptide and the O‐linked domain. In addition, translating this information into 3D structure of the LDLr highlights potentially pathogenic clusters within the different domains, which may be related to specific biological function. The results of this work provide a powerful tool to classify LDLR pathogenic variants. Moreover, an open‐access guide user interface (OptiMo‐LDLr) is provided to the scientific community. This study shows that combination of several predictive software results in a more accurate prediction to help clinicians in FH diagnosis.
- Published
- 2024
- Full Text
- View/download PDF
4. Extrusion-Based 3D Printing of Photocrosslinkable Chitosan Inks
- Author
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Ane García-García, Leyre Pérez-Álvarez, Leire Ruiz-Rubio, Asier Larrea-Sebal, Cesar Martin, and José Luis Vilas-Vilela
- Subjects
methacrylated chitosan ,photocrosslinking ,extrusion printing ,Science ,Chemistry ,QD1-999 ,Inorganic chemistry ,QD146-197 ,General. Including alchemy ,QD1-65 - Abstract
Photocuring of chitosan has shown great promise in the extrusion-based 3D printing of scaffolds for advanced biomedical and tissue engineering applications. However, the poor mechanical stability of methacrylated chitosan photocuring ink restricts its applicability. The inclusion of co-networks by means of simultaneous polycomplex formation is an effective method by which to solve this drawback, but the formed hydrogel inks are not printable. This work aims to develop new photocurable chitosan inks based on the simultaneous photocrosslinking of methacrylated chitosan (CHIMe) with N,N′-methylenebisacrylamide, polyethylene glycol diacrylate, and acrylic acid to be applied in extrusion 3D printing. Interestingly, the polycomplex co-network corresponding to the acrylic-acid-based ink could be successfully printed by the here-presented simultaneous photocuring strategy. Further, the conversion of photocrosslinking was studied via photo-DSC analyses that revealed a clear dependence on the chemical structure of the employed crosslinking agents (from 40 to ~100%). In addition, the mechanical and rheological properties of the photocured hydrogels were comparatively studied, as well as the printing quality of the extruded scaffolds. The newly developed chitosan photocurable inks demonstrated extrusion printability (squareness ~0.90; uniformity factor ~0.95) and tunable mechanical properties (Young modulus 14–1068 Pa) by means of different crosslinking approaches according to the chemical architecture of the reactive molecules employed. This work shows the great potential of photocrosslinkable chitosan inks.
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- 2024
- Full Text
- View/download PDF
5. Contribution of APOE Genetic Variants to Dyslipidemia
- Author
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Bea, Ana M., Larrea-Sebal, Asier, Marco-Benedi, Victoria, Uribe, Kepa B., Galicia-Garcia, Unai, Lamiquiz-Moneo, Itziar, Laclaustra, Martín, Moreno-Franco, Belén, Fernandez-Corredoira, Pablo, Olmos, Salvador, Civeira, Fernando, Martin, César, and Cenarro, Ana
- Published
- 2023
- Full Text
- View/download PDF
6. Lipoprotein(a) in hereditary hypercholesterolemia: Influence of the genetic cause, defective gene and type of mutation
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Marco-Benedí, Victoria, Cenarro, Ana, Laclaustra, Martín, Larrea-Sebal, Asier, Jarauta, Estíbaliz, Lamiquiz-Moneo, Itziar, Calmarza, Pilar, Bea, Ana M., Plana, Núria, Pintó, Xavier, Martín, César, and Civeira, Fernando
- Published
- 2022
- Full Text
- View/download PDF
7. MLb-LDLr: A Machine Learning Model for Predicting the Pathogenicity of LDLr Missense Variants
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Larrea-Sebal, Asier, Benito-Vicente, Asier, Fernandez-Higuero, José A., Jebari-Benslaiman, Shifa, Galicia-Garcia, Unai, Uribe, Kepa B., Cenarro, Ana, Ostolaza, Helena, Civeira, Fernando, Arrasate, Sonia, González-Díaz, Humberto, and Martín, César
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- 2021
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8. Familial hypercholesterolemia
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Jebari-Benslaiman, Shifa, primary, Galicia-Garcia, Unai, additional, Larrea-Sebal, Asier, additional, Uribe, Kepa B., additional, Martin, Cesar, additional, and Benito-Vicente, Asier, additional
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- 2022
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9. Contributors
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Aguayo, Luis G., primary, Ahmed, Marium, additional, Ahmed, Mohamed H., additional, Ahmed, Musaab, additional, Albuquerque, Hélio M.T., additional, Alonso, Alicia, additional, Ashkar, Rana, additional, Azzaz, Fodil, additional, Baier, Carlos J., additional, Barrantes, Francisco J., additional, Bednarska-Makaruk, Małgorzata, additional, Bell, Andrew S., additional, Benito-Vicente, Asier, additional, Brown, Michael F., additional, Bukiya, Anna N., additional, Burgos, Carlos F., additional, Chahinian, Henri, additional, Chatuphonprasert, Waranya, additional, Chong, Parkson Lee-Gau, additional, Cicero, Arrigo F.G., additional, Cincione, Ivan R., additional, Clemente, Tatiana M., additional, Cook, George A., additional, Cournia, Zoe, additional, Di Scala, Coralie, additional, Doktorova, Milka, additional, Doole, Fathima T., additional, Dopico, Alex M., additional, Drosos, Alexandros A., additional, Du, Hong, additional, Elam, Marshall B., additional, Ellinger, Isabella, additional, Fantini, Jacques, additional, Ferrari, Filipe, additional, Galicia-Garcia, Unai, additional, García-Arribas, Aritz B., additional, Gilk, Stacey D., additional, Goñi, Félix M., additional, Gonzalez-Sanmiguel, Juliana, additional, Grabowski, Gregory A., additional, Gupta, Sudipta, additional, Herfel, Tina, additional, Hu, DanRong, additional, Huang, Juyang, additional, Jebari-Benslaiman, Shifa, additional, Jiang, Qiu-Xing, additional, Karr, Samantha, additional, Khelashvili, George, additional, Kiriakidi, Sofia, additional, Kovacs, Tamas, additional, Kumarage, Teshani, additional, Lardinois, Claude K., additional, Larrea-Sebal, Asier, additional, Levitan, Irena, additional, Li, Hanxuan, additional, Li, Wei, additional, Lohoff, Falk W., additional, Ługowska, Agnieszka, additional, Martin, Cesar, additional, Martins, Vítor M., additional, Mavromoustakos, Thomas, additional, Mc Auley, Mark T., additional, Mital, Dushyant, additional, Moore,, Bob M., additional, Morgan, Amy E., additional, Mouritsen, Ole G., additional, Mysiewicz, Steven, additional, North, Kelsey C., additional, O’Connell, Emma M., additional, Pasenkiewicz-Gierula, Marta, additional, Qian, ZhiYong, additional, Roa, Jorge P., additional, Rosenhouse-Dantsker, Avia, additional, Santos, Clementina M.M., additional, Silva, Artur M.S., additional, Slayden, Alexandria, additional, Soliman, Ghada A., additional, Stein, Natalia, additional, Stein, Ricardo, additional, Subczynski, Witold K., additional, Sugár, István P., additional, Szente, Lajos, additional, Uribe, Kepa B., additional, Varga, Zoltan, additional, Venetsanopoulou, Aliki I., additional, Voulgari, Paraskevi V., additional, Welty, Francine K., additional, Widomska, Justyna, additional, Yahi, Nouara, additional, Zadak, Zdenek, additional, and Zakany, Florina, additional
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- 2022
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10. Extrusion-Based 3D Printing of Photocrosslinkable Chitosan Inks
- Author
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Bioquímica y biología molecular, Química física, Kimika fisikoa, Biokimika eta biologia molekularra, García García, Ane, Pérez Álvarez, Leyre, Ruiz Rubio, Leire, Larrea Sebal, Asier, Martín Plágaro, César Augusto, Vilas Vilela, José Luis, Bioquímica y biología molecular, Química física, Kimika fisikoa, Biokimika eta biologia molekularra, García García, Ane, Pérez Álvarez, Leyre, Ruiz Rubio, Leire, Larrea Sebal, Asier, Martín Plágaro, César Augusto, and Vilas Vilela, José Luis
- Abstract
Photocuring of chitosan has shown great promise in the extrusion-based 3D printing of scaffolds for advanced biomedical and tissue engineering applications. However, the poor mechanical stability of methacrylated chitosan photocuring ink restricts its applicability. The inclusion of co-networks by means of simultaneous polycomplex formation is an effective method by which to solve this drawback, but the formed hydrogel inks are not printable. This work aims to develop new photocurable chitosan inks based on the simultaneous photocrosslinking of methacrylated chitosan (CHIMe) with N,N′-methylenebisacrylamide, polyethylene glycol diacrylate, and acrylic acid to be applied in extrusion 3D printing. Interestingly, the polycomplex co-network corresponding to the acrylic-acid-based ink could be successfully printed by the here-presented simultaneous photocuring strategy. Further, the conversion of photocrosslinking was studied via photo-DSC analyses that revealed a clear dependence on the chemical structure of the employed crosslinking agents (from 40 to ~100%). In addition, the mechanical and rheological properties of the photocured hydrogels were comparatively studied, as well as the printing quality of the extruded scaffolds. The newly developed chitosan photocurable inks demonstrated extrusion printability (squareness ~0.90; uniformity factor ~0.95) and tunable mechanical properties (Young modulus 14–1068 Pa) by means of different crosslinking approaches according to the chemical architecture of the reactive molecules employed. This work shows the great potential of photocrosslinkable chitosan inks.
- Published
- 2024
11. Evaluation of Various Types of Alginate Inks for Light-Mediated Extrusion 3D Printing
- Author
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Química física, Química Orgánica e Inorgánica, Bioquímica y biología molecular, Biokimika eta biologia molekularra, Kimika fisikoa, Kimika Organikoa eta Ez-Organikoa, Zoco de la Fuente, Aitana, García García, Ane, Pérez Álvarez, Leyre, Moreno Benitez, María Isabel, Larrea Sebal, Asier, Martín Plágaro, César Augusto, Vilas Vilela, José Luis, Química física, Química Orgánica e Inorgánica, Bioquímica y biología molecular, Biokimika eta biologia molekularra, Kimika fisikoa, Kimika Organikoa eta Ez-Organikoa, Zoco de la Fuente, Aitana, García García, Ane, Pérez Álvarez, Leyre, Moreno Benitez, María Isabel, Larrea Sebal, Asier, Martín Plágaro, César Augusto, and Vilas Vilela, José Luis
- Abstract
Naturally derived biopolymers modifying or combining with other components are excellent candidates to promote the full potential of additive manufacturing in biomedicine, cosmetics, and the food industry. This work aims to develop new photo-cross-linkable alginate-based inks for extrusion 3D printing. Specifically, this work is focused on the effect of the addition of cross-linkers with different chemical structures (polyethylene glycol diacrylate (PEGDA), N,N′-methylenebisacrylamide (NMBA), and acrylic acid (AA)) in the potential printability and physical properties of methacrylated alginate (AlgMe) hydrogels. Although all inks showed maximum photo-curing conversions and gelation times less than 2 min, only those structures printed with the inks incorporating cross-linking agents with flexible and long chain structure (PEGDA and AA) displayed acceptable size accuracy (~0.4–0.5) and printing index (Pr ~1.00). The addition of these cross-linking agents leads to higher Young’s moduli (from 1.6 to 2.0–2.6 KPa) in the hydrogels, and their different chemical structures results in variations in their mechanical and rheological properties. However, similar swelling ability (~15 swelling factor), degradability (~45 days 100% weight loss), and cytocompatibility (~100%) were assessed in all the systems, which is of great importance for the final applicability of these hydrogels.
- Published
- 2024
12. Extrusion-Based 3D Printing of Photocrosslinkable Chitosan Inks
- Author
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García-García, Ane, primary, Pérez-Álvarez, Leyre, additional, Ruiz-Rubio, Leire, additional, Larrea-Sebal, Asier, additional, Martin, Cesar, additional, and Vilas-Vilela, José Luis, additional
- Published
- 2024
- Full Text
- View/download PDF
13. OptiMo‐LDLr: An Integrated In Silico Model with Enhanced Predictive Power for LDL Receptor Variants, Unraveling Hot Spot Pathogenic Residues
- Author
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Larrea‐Sebal, Asier, primary, Sasiain, Iñaki, additional, Jebari‐Benslaiman, Shifa, additional, Galicia‐Garcia, Unai, additional, Uribe, Kepa B., additional, Benito‐Vicente, Asier, additional, Gracia‐Rubio, Irene, additional, Bediaga‐Bañeres, Harbil, additional, Arrasate, Sonia, additional, Cenarro, Ana, additional, Civeira, Fernando, additional, González‐Díaz, Humberto, additional, and Martín, Cesar, additional
- Published
- 2024
- Full Text
- View/download PDF
14. Multifunctional Curcumin-Based Polymer Coating: A Promising Platform Against Bacteria, Inflammation and Coagulation
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Sánchez, Julia, primary, MORENO BENITEZ, ISABEL, additional, Laza, Jose Manuel, additional, Larrea-Sebal, Asier, additional, Martín, Cesar, additional, Irastorza, Igor, additional, Silvan, Unai, additional, and Vilas-Vilela, José Luis, additional
- Published
- 2024
- Full Text
- View/download PDF
15. Contribution of APOE Genetic Variants to Dyslipidemia
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Ana M. Bea, Asier Larrea-Sebal, Victoria Marco-Benedi, Kepa B. Uribe, Unai Galicia-Garcia, Itziar Lamiquiz-Moneo, Martín Laclaustra, Belén Moreno-Franco, Pablo Fernandez-Corredoira, Salvador Olmos, Fernando Civeira, César Martin, and Ana Cenarro
- Subjects
Cardiology and Cardiovascular Medicine - Abstract
Background: apo (apolipoprotein) E has crucial role in lipid metabolism. The genetic variation in APOE gene is associated with monogenic disorders and contributes to polygenic hypercholesterolemia and to interindividual variability in cholesterol. APOE rare variants may be involved in the phenotype of genetic hyperlipidemias. Methods: Exon 4 of APOE were sequenced in all consecutive unrelated subjects with primary hyperlipidemia from a Lipid Unit (n=3667) and 822 random subjects from the Aragon Workers Health Study. Binding affinity of VLDL (very low-density lipoprotein) to LDL receptor of pathogenic predicted apoE variants was analyzed in vitro. Lipoprotein particle number, size, and composition were studied by nuclear magnetic resonance. Results: In addition to common polymorphisms giving rise to APOE2 and APOE4, 14 gene variants were found in exon 4 of APOE in 65 subjects. p.(Leu167del) in 8 patients with isolated hypercholesterolemia and in 8 patients with combined hyperlipidemia. Subjects with p.(Arg121Trp), p.(Gly145Asp), p.(Arg154Ser), p.(Arg163Cys), p.(Arg165Trp), and p.(Arg168His) variants met dysbetalipoproteinemia lipid criteria and were confirmed by nuclear magnetic resonance. VLDL affinity for the LDL receptor of p.(Arg163Cys) and p.(Arg165Trp) heterozygous carriers had intermedium affinity between APOE2/2 and APOE3/3. p.(Gly145Asp) and p.(Pro220Leu) variants had higher affinity than APOE3/3. Conclusions: APOE genetic variation contributes to the development of combined hyperlipidemia, usually dysbetalipoproteinemia, and familial hypercholesterolemia. The lipid phenotype in heterozygous for dysbetalipoproteinemia-associated mutations is milder than the homozygous APOE2/2-associated phenotype. Subjects with dysbetalipoproteinemia and absence of APOE2/2 are good candidates for the study of pathogenic variants in APOE . However, more investigation is required to elucidate the significance of rarer variants of apoE.
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- 2023
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16. The Arg499His gain-of-function mutation in the C-terminal domain of PCSK9
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Sánchez-Hernández, Rosa M., Di Taranto, Maria Donata, Benito-Vicente, Asier, Uribe, Kepa B., Lamiquiz-Moneo, Itziar, Larrea-Sebal, Asier, Jebari, Shifa, Galicia-Garcia, Unai, Nóvoa, F. Javier, Boronat, Mauro, Wägner, Ana M., Civeira, Fernando, Martín, César, and Fortunato, Giuliana
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- 2019
- Full Text
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17. Molecular mechanisms of lipotoxicity-induced pancreatic β-cell dysfunction
- Author
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Benito-Vicente, Asier, primary, Jebari-Benslaiman, Shifa, additional, Galicia-Garcia, Unai, additional, Larrea-Sebal, Asier, additional, Uribe, Kepa B., additional, and Martin, Cesar, additional
- Published
- 2021
- Full Text
- View/download PDF
18. Evaluation of Various Types of Alginate Inks for Light-Mediated Extrusion 3D Printing.
- Author
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Zoco de la Fuente, Aitana, García-García, Ane, Pérez-Álvarez, Leyre, Moreno-Benítez, Isabel, Larrea-Sebal, Asier, Martin, Cesar, and Vilas-Vilela, Jose Luis
- Subjects
THREE-dimensional printing ,ALGINIC acid ,YOUNG'S modulus ,ALGINATES ,HYDROGELS ,RHEOLOGY ,CHEMICAL structure - Abstract
Naturally derived biopolymers modifying or combining with other components are excellent candidates to promote the full potential of additive manufacturing in biomedicine, cosmetics, and the food industry. This work aims to develop new photo-cross-linkable alginate-based inks for extrusion 3D printing. Specifically, this work is focused on the effect of the addition of cross-linkers with different chemical structures (polyethylene glycol diacrylate (PEGDA), N,N′-methylenebisacrylamide (NMBA), and acrylic acid (AA)) in the potential printability and physical properties of methacrylated alginate (AlgMe) hydrogels. Although all inks showed maximum photo-curing conversions and gelation times less than 2 min, only those structures printed with the inks incorporating cross-linking agents with flexible and long chain structure (PEGDA and AA) displayed acceptable size accuracy (~0.4–0.5) and printing index (Pr ~1.00). The addition of these cross-linking agents leads to higher Young's moduli (from 1.6 to 2.0–2.6 KPa) in the hydrogels, and their different chemical structures results in variations in their mechanical and rheological properties. However, similar swelling ability (~15 swelling factor), degradability (~45 days 100% weight loss), and cytocompatibility (~100%) were assessed in all the systems, which is of great importance for the final applicability of these hydrogels. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
19. Coordinated overexpression of miR-33a and miR-27b induced by statin-treatment contributes to the development of type 2 diabetes mellitus
- Author
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Garcia, Unai Galicia, Jebari-Benslaiman, Shifa, Lopez-Ariño, Chuan, Benito-Vicente, Asier, Larrea-Sebal, Asier, Uribe, Kepa Belloso, Gracia-Rubio, Irene, Lagunas, Ana Cenarro, Murillo, Fernando Civeira, and Martin, Cesar
- Published
- 2024
- Full Text
- View/download PDF
20. Nonsense variants in APOB gene in exon 29 - A new perspective
- Author
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Ferreira, Maria, Alves, Ana Catarina, Larrea-Sebal, Asier, Martin, Cesar, and Bourbon, Mafalda
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- 2024
- Full Text
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21. Cholesterol crystal solubilization by reconstituted high-density lipoproteins: A biophysical exploration and evaluation of their efficacy in removing extracellular cholesterol deposits in vitro
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Vicente, Asier Benito, Garcia-Pitarch, Carla, Etxabe, Irati, Larrea-Sebal, Asier, San Jose- Urteaga, Ane, Garcia, Unai Galicia, Uribe, Kepa Belloso, and Martin, Cesar
- Published
- 2024
- Full Text
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22. Mutation type classification and pathogenicity assignment of sixteen missense variants located in the EGF-precursor homology domain of the LDLR
- Author
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Galicia-Garcia, Unai, Benito-Vicente, Asier, Uribe, Kepa B., Jebari, Shifa, Larrea-Sebal, Asier, Alonso-Estrada, Rocio, Aguilo-Arce, Joseba, Ostolaza, Helena, Palacios, Lourdes, and Martin, Cesar
- Published
- 2020
- Full Text
- View/download PDF
23. Cardiovascular Disease, Atherosclerosis and Familial Hypercholesterolemia: From Molecular Mechanisms Causing Pathogenicity to New Therapeutic Approaches
- Author
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Jebari-Benslaiman, Shifa, primary, Larrea-Sebal, Asier, additional, Benito-Vicente, Asier, additional, and Martín, César, additional
- Published
- 2023
- Full Text
- View/download PDF
24. Cardiovascular Disease, Atherosclerosis and Familial Hypercholesterolemia: From Molecular Mechanisms Causing Pathogenicity to New Therapeutic Approaches
- Author
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Bioquímica y biología molecular, Biokimika eta biologia molekularra, Jebari Benslaiman, Shifa, Larrea Sebal, Asier, Benito Vicente, Asier, Martín Plágaro, César Augusto, Bioquímica y biología molecular, Biokimika eta biologia molekularra, Jebari Benslaiman, Shifa, Larrea Sebal, Asier, Benito Vicente, Asier, and Martín Plágaro, César Augusto
- Abstract
This Special Issue, “Cardiovascular Disease, Atherosclerosis and Familial Hypercholesterolemia: From Molecular Mechanisms Causing Pathogenicity to New Therapeutic Approaches”, contributes to advancing our knowledge of the molecular mechanisms that drive cardiovascular disease, atherosclerosis and familial hypercholesterolemia and the development of state-of-the-art research in the field. This Special Issues is the result of a call for papers that was sent out in late 2020 and continued till mid-2022, from which twelve papers (six original research articles, one hypothesis and five reviews) were published.
- Published
- 2023
25. Functional Characterization of p.(Arg160Gln) PCSK9 Variant Accidentally Found in a Hypercholesterolemic Subject
- Author
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Bioquímica y biología molecular, Biokimika eta biologia molekularra, Larrea Sebal, Asier, Trenti, Chiara, Jebari-Benslaiman, Shifa, Bertolini, Stefano, Calandra, Sebastiano, Negri, Emanuele A., Bonelli, Efrem, Benito Vicente, Asier, Uraga Gracianteparaluceta, Leire, Martín Plágaro, César Augusto, Fasano, Tommaso, Bioquímica y biología molecular, Biokimika eta biologia molekularra, Larrea Sebal, Asier, Trenti, Chiara, Jebari-Benslaiman, Shifa, Bertolini, Stefano, Calandra, Sebastiano, Negri, Emanuele A., Bonelli, Efrem, Benito Vicente, Asier, Uraga Gracianteparaluceta, Leire, Martín Plágaro, César Augusto, and Fasano, Tommaso
- Abstract
Familial hypercholesterolaemia (FH) is an autosomal dominant dyslipidaemia, characterised by elevated LDL cholesterol (LDL-C) levels in the blood. Three main genes are involved in FH diagnosis: LDL receptor (LDLr), Apolipoprotein B (APOB) and Protein convertase subtilisin/kexin type 9 (PCSK9) with genetic mutations that led to reduced plasma LDL-C clearance. To date, several PCSK9 gain-of-function (GOF) variants causing FH have been described based on their increased ability to degrade LDLr. On the other hand, mutations that reduce the activity of PCSK9 on LDLr degradation have been described as loss-of-function (LOF) variants. It is therefore important to functionally characterise PCSK9 variants in order to support the genetic diagnosis of FH. The aim of this work is to functionally characterise the p.(Arg160Gln) PCSK9 variant found in a subject suspected to have FH. Different techniques have been combined to determine efficiency of the autocatalytic cleavage, protein expression, effect of the variant on LDLr activity and affinity of the PCSK9 variant for the LDLr. Expression and processing of the p.(Arg160Gln) variant had a result similar to that of WT PCSK9. The effect of p.(Arg160Gln) PCSK9 on LDLr activity is lower than WT PCSK9, with higher values of LDL internalisation (13%) and p.(Arg160Gln) PCSK9 affinity for the LDLr is lower than WT, EC50 8.6 ± 0.8 and 25.9 ± 0.7, respectively. The p.(Arg160Gln) PCSK9 variant is a LOF PCSK9 whose loss of activity is caused by a displacement of the PCSK9 P’ helix, which reduces the stability of the LDLr-PCSK9 complex.
- Published
- 2023
26. Cardiovascular Disease, Atherosclerosis and Familial Hypercholesterolemia: From Molecular Mechanisms Causing Pathogenicity to New Therapeutic Approaches
- Author
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Shifa Jebari-Benslaiman, Asier Larrea-Sebal, Asier Benito-Vicente, and César Martín
- Subjects
Inorganic Chemistry ,Organic Chemistry ,General Medicine ,Physical and Theoretical Chemistry ,Molecular Biology ,Spectroscopy ,Catalysis ,Computer Science Applications - Abstract
This Special Issue, “Cardiovascular Disease, Atherosclerosis and Familial Hypercholesterolemia: From Molecular Mechanisms Causing Pathogenicity to New Therapeutic Approaches”, contributes to advancing our knowledge of the molecular mechanisms that drive cardiovascular disease, atherosclerosis and familial hypercholesterolemia and the development of state-of-the-art research in the field. This Special Issues is the result of a call for papers that was sent out in late 2020 and continued till mid-2022, from which twelve papers (six original research articles, one hypothesis and five reviews) were published.
- Published
- 2023
27. Functional Characterization of p.(Arg160Gln) PCSK9 Variant Accidentally Found in a Hypercholesterolemic Subject
- Author
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Larrea-Sebal, Asier, primary, Trenti, Chiara, additional, Jebari-Benslaiman, Shifa, additional, Bertolini, Stefano, additional, Calandra, Sebastiano, additional, Negri, Emanuele A., additional, Bonelli, Efrem, additional, Benito-Vicente, Asier, additional, Uraga-Gracianteparaluceta, Leire, additional, Martín, César, additional, and Fasano, Tommaso, additional
- Published
- 2023
- Full Text
- View/download PDF
28. Functional Characterization of p.(Arg160Gln) PCSK9 Variant Accidentally Found in a Hypercholesterolemic Subject
- Author
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Asier Larrea-Sebal, Chiara Trenti, Shifa Jebari-Benslaiman, Stefano Bertolini, Sebastiano Calandra, Emanuele A. Negri, Efrem Bonelli, Asier Benito-Vicente, Leire Uraga-Gracianteparaluceta, César Martín, and Tommaso Fasano
- Subjects
characterisation ,familial hypercholesterolemia ,activity ,Organic Chemistry ,General Medicine ,Catalysis ,Computer Science Applications ,Inorganic Chemistry ,PCSK9 ,GOF ,Physical and Theoretical Chemistry ,Molecular Biology ,Spectroscopy ,LOF - Abstract
Familial hypercholesterolaemia (FH) is an autosomal dominant dyslipidaemia, characterised by elevated LDL cholesterol (LDL-C) levels in the blood. Three main genes are involved in FH diagnosis: LDL receptor (LDLr), Apolipoprotein B (APOB) and Protein convertase subtilisin/kexin type 9 (PCSK9) with genetic mutations that led to reduced plasma LDL-C clearance. To date, several PCSK9 gain-of-function (GOF) variants causing FH have been described based on their increased ability to degrade LDLr. On the other hand, mutations that reduce the activity of PCSK9 on LDLr degradation have been described as loss-of-function (LOF) variants. It is therefore important to functionally characterise PCSK9 variants in order to support the genetic diagnosis of FH. The aim of this work is to functionally characterise the p.(Arg160Gln) PCSK9 variant found in a subject suspected to have FH. Different techniques have been combined to determine efficiency of the autocatalytic cleavage, protein expression, effect of the variant on LDLr activity and affinity of the PCSK9 variant for the LDLr. Expression and processing of the p.(Arg160Gln) variant had a result similar to that of WT PCSK9. The effect of p.(Arg160Gln) PCSK9 on LDLr activity is lower than WT PCSK9, with higher values of LDL internalisation (13%) and p.(Arg160Gln) PCSK9 affinity for the LDLr is lower than WT, EC50 8.6 ± 0.8 and 25.9 ± 0.7, respectively. The p.(Arg160Gln) PCSK9 variant is a LOF PCSK9 whose loss of activity is caused by a displacement of the PCSK9 P’ helix, which reduces the stability of the LDLr-PCSK9 complex. This research was funded by Grupos Consolidados Gobierno Vasco 2021, grant number IT1720-22. A.L.-S. was supported by a grant PIF (2019–2020), Gobierno Vasco and partially supported by Fundación Biofísica Bizkaia. S.J-B. was supported by a Margarita Salas Grant 2022 from the University of the Basque Country.
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- 2023
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29. Cholesterol Efflux Efficiency of Reconstituted HDL Is Affected by Nanoparticle Lipid Composition
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Shifa Jebari-Benslaiman, Kepa B. Uribe, Asier Benito-Vicente, Unai Galicia-Garcia, Asier Larrea-Sebal, Iraide Alloza, Koen Vandenbroeck, Helena Ostolaza, and César Martín
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apoA-I ,rHDL ,nanodisc ,cholesterol efflux ,cardiovascular disease ,Biology (General) ,QH301-705.5 - Abstract
Cardiovascular disease (CVD), the leading cause of mortality worldwide is primarily caused by atherosclerosis, which is promoted by the accumulation of low-density lipoproteins into the intima of large arteries. Multiple nanoparticles mimicking natural HDL (rHDL) have been designed to remove cholesterol excess in CVD therapy. The goal of this investigation was to assess the cholesterol efflux efficiency of rHDLs with different lipid compositions, mimicking different maturation stages of high-density lipoproteins (HDLs) occurring in vivo. Methods: the cholesterol efflux activity of soybean PC (Soy-PC), 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC), DPPC:Chol:1-palmitoyl-2-hydroxy-sn-glycero-3-phosphocholine (LysoPC) and DPPC:18:2 cholesteryl ester (CE):LysoPC rHDLs was determined in several cell models to investigate the contribution of lipid composition to the effectiveness of cholesterol removal. Results: DPPC rHDLs are the most efficient particles, inducing cholesterol efflux in all cellular models and in all conditions the effect was potentiated when the ABCA1 transporter was upregulated. Conclusions: DPPC rHDLs, which resemble nascent HDL, are the most effective particles in inducing cholesterol efflux due to the higher physical binding affinity of cholesterol to the saturated long-chain-length phospholipids and the favored cholesterol transfer from a highly positively curved bilayer, to an accepting planar bilayer such as DPPC rHDLs. The physicochemical characteristics of rHDLs should be taken into consideration to design more efficient nanoparticles to promote cholesterol efflux.
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- 2020
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30. Replacement of cysteine at position 46 in the first cysteine-rich repeat of the LDL receptor impairs apolipoprotein recognition.
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A Benito-Vicente, K B Uribe, H Siddiqi, S Jebari, U Galicia-Garcia, A Larrea-Sebal, A Cenarro, M Stef, H Ostolaza, F Civeira, L Palacios, and C Martin
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Medicine ,Science - Abstract
BACKGROUND AND AIMS:Pathogenic mutations in the Low Density Lipoprotein Receptor gene (LDLR) cause Familial Hypercholesterolemia (FH), one of the most common genetic disorders with a prevalence as high as 1 in 200 in some populations. FH is an autosomal dominant disorder of lipoprotein metabolism characterized by high blood cholesterol levels, deposits of cholesterol in peripheral tissues such as tendon xanthomas and accelerated atherosclerosis. To date, 2500 LDLR variants have been identified in the LDLR gene; however, only a minority of them have been experimentally characterized and proven to be pathogenic. Here we investigated the role of Cys46 located in the first repeat of the LDL receptor binding domain in recognition of apolipoproteins. METHODS:Activity of the p.(Cys46Gly) LDLR variant was assessed by immunoblotting and flow cytometry in CHO-ldlA7 expressing the receptor variant. Affinity of p.(Cys46Gly) for LDL and VLDL was determined by solid-phase immunoassays and in silico analysis was used to predict mutation effects. RESULTS AND CONCLUSION:Functional characterization of p.(Cys46Gly) LDLR variant showed impaired LDL and VLDL binding and uptake activity. Consistent with this, solid-phase immunoassays showed the p.(Cys46Gly) LDLR variant has decreased binding affinity for apolipoproteins. These results indicate the important role of Cys46 in LDL receptor activity and highlight the role of LR1 in LDLr activity modulation. This study reinforces the significance of in vitro functional characterization of LDL receptor activity in developing an accurate approach to FH genetic diagnosis. This is of particular importance because it enables clinicians to tailor personalized treatments for patients' mutation profile.
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- 2018
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31. MLb-LDLr
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Sonia Arrasate, Kepa B. Uribe, Unai Galicia-Garcia, Shifa Jebari-Benslaiman, Helena Ostolaza, César Martín, Fernando Civeira, Humberto González-Díaz, Ana Cenarro, José Angel Fernández-Higuero, Asier Larrea-Sebal, and Asier Benito-Vicente
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LNN, linear neural networks ,Disease ,Cascade screening ,Familial hypercholesterolemia ,Biology ,Machine learning ,computer.software_genre ,FH, familial hypercholesterolemia ,LDL, low-density lipoprotein ,machine learning software ,medicine ,Missense mutation ,pathogenicity ,EGS, expert-guided selection ,ML, machine learning ,Gene ,AUROC, area under the receiver operating curve ,familial hypercholesterolemia ,business.industry ,nutritional and metabolic diseases ,LDL receptor ,ESEA, Excel Solver Evolutionary algorithm ,prediction ,ANN, artificial neural network ,Pathogenicity ,medicine.disease ,LDLr, low-density lipoprotein receptor ,UTR, untranslated region ,RBF, radial basis function ,MLb-LDLr, machine-learning–based low-density lipoprotein receptor software ,lipids (amino acids, peptides, and proteins) ,Artificial intelligence ,Preclinical Research ,MLP, multilayer perceptron ,Cardiology and Cardiovascular Medicine ,business ,computer ,LDA, linear discriminant analysis - Abstract
Visual Abstract, Highlights • A machine-learning model has been developed to improve accuracy on predicting the activity of missense LDLr mutations. • ClinVar was used as database, and the model function was defined by using specific characteristics of the LDLr. • A high-score prediction ML model with specificity of 92.5% and sensitivity of 91.6% has been developed to predict pathogenicity of LDLr variants. • Implementation of high-predicting capacity software constitutes a valuable approach for assessing pathogenicity of LDLr variants to help in the early diagnosis and management of FH disease. • An open-access predictive software (MLb-LDLr) is provided to the scientific community., Summary Untreated familial hypercholesterolemia (FH) leads to atherosclerosis and early cardiovascular disease. Mutations in the low-density lipoprotein receptor (LDLr) gene constitute the major cause of FH, and the high number of mutations already described in the LDLr makes necessary cascade screening or in vitro functional characterization to provide a definitive diagnosis. Implementation of high-predicting capacity software constitutes a valuable approach for assessing pathogenicity of LDLr variants to help in the early diagnosis and management of FH disease. This work provides a reliable machine learning model to accurately predict the pathogenicity of LDLr missense variants with specificity of 92.5% and sensitivity of 91.6%.
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- 2021
32. p.(Asp47Asn) and p.(Thr62Met): non deleterious LDL receptor missense variants functionally characterized in vitro
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Benito-Vicente, A., Siddiqi, H., Uribe, K. B., Jebari, S., Galicia-Garcia, U., Larrea-Sebal, A., Stef, M., Ostolaza, H., Palacios, L., and Martin, C.
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- 2018
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33. Detección del dolor: escalas para valorar el dolor en niños con parálisis cerebral infantil parálisis cerebral; niño y valoración del dolor; cerebral palsy; child and pain assessment
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Larrea-Sebal, Aitor
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cerebral palsy ,niño y valoración del dolor ,Máster en Cuidados Paliativos Pediátricos ,parálisis cerebral ,child and pain assessment - Abstract
Pain causes disability and suffering to those who suffer from it and has been considered a public health problem since 1982 by the World Health Organization (WHO). In children with Infantile Cerebral Palsy (ICP) it is a challenge to identify and assess pain. In recent years the number of tools to assess pain in children has increased considerably. However, to date, there are no standardized measures for a comprehensive assessment of pain in children with cerebral palsy. General objective: To review the scales used to assess pain in children aged 6 to 12 years with Infantile Cerebral Palsy. Methodology: To obtain the articles to meet the objective of this literature review, different databases such as PUBMED, COCHRANE, SCOPUS, SCIELO, DIALNET and BIBLIOTECA UNIR were consulted. In addition to searching the databases, for Clinical Practice Guidelines, RNAO, NICE, and GUÍA SALUD were searched. Finally, to ensure a comprehensive search, a hand search was carried out on the SCIENCE DIRECT platform. As for the selection of articles, articles published from 2017 onwards were considered. As for the language of the selected articles, articles published in Spanish and English were considered. Results: To meet the objective, 20 articles were selected for the study. Of these, 7 were cross-sectional studies, 1 case-control study, 3 retrospective cohort studies, 2 prospective cohort studies, 1 prospective observational study, 1 clinical trial, 2 literature searches, 2 systematic reviews and 1 Clinical Practice Guideline. Conclusions: According to these investigations, although in terms of statistical data, the FLACC-r scale obtained the most statistically significant results, in terms of the previously selected criteria, both the FLACC-r scale and the PPP scale would be the only scales that meet all the criteria, adapting in the best way to the needs of assessing pain in children with infantile cerebral palsy. Introducción: El dolor es causante de discapacidades y sufrimiento a quien lo padece, siendo considerado problema de salud pública desde el año 1982 por la Organización Mundial de la Salud (OMS). En niños con Parálisis Cerebral Infantil (PCI) es un reto identificar y evaluar el dolor. En los últimos años el número de herramientas para evaluar el dolor en niños ha aumentado considerablemente. Sin embargo, a día de hoy, no hay medidas estandarizadas para realizar una valoración exhaustiva del dolor en niños con parálisis cerebral. Objetivo general: Revisar las escalas utilizadas para valorar el dolor en niños de 6 a 12 años con Parálisis Cerebral Infantil. Metodología: Para conseguir los artículos para responder el objetivo de esta revisión bibliográfica de la literatura se consultaron diferentes bases de datos como PUBMED, COCHRANE, SCOPUS, SCIELO, DIALNET y BIBLIOTECA UNIR. Además de buscar en las bases de datos, en cuanto a las Guías de Práctica Clínica, se buscó en RNAO, NICE, y GUÍA SALUD. Para terminar, para asegurar una búsqueda amplia, se realizó una búsqueda a mano en la plataforma SCIENCE DIRECT. En cuanto a la selección de los artículos, se tuvieron en cuenta los artículos publicados a partir del año 2017. En cuanto al idioma de los artículos seleccionados, se tuvieron en cuenta los artículos publicados en castellano e inglés. Resultados: Para responder al objetivo se seleccionaron 20 artículos para realizar el trabajo. 7 de ellos fueron estudios trasversales, 1 estudio caso control, 3 estudios cohortes retrospectivos, 2 estudios cohortes prospectivos, 1 estudio prospectivo observacional, 1 ensayo clínico, 2 búsquedas bibliográficas, 2 revisiones sistemáticas y 1 Guía de Práctica Clínica. Conclusiones: Según estas investigaciones, aunque en cuanto a los datos estadísticos, la escala FLACC-r obtuvieran los resultados estadísticamente más significativos, en cuanto a los criterios previamente seleccionados, tanto la escala FLACC-r como la escala PPP serían las únicas escalas que cumple todos los criterios, adaptándose de la mejor forma a las necesidades de valorar el dolor en niños con parálisis cerebral infantil.
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- 2022
34. Leu22_Leu23 Duplication at the Signal Peptide of PCSK9 Promotes Intracellular Degradation of LDLr and Autosomal Dominant Hypercholesterolemia
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Asier Benito-Vicente, Kepa B. Uribe, Asier Larrea-Sebal, Lourdes Palacios, Ana Cenarro, Xabier Calle, Unai Galicia-Garcia, Shifa Jebari-Benslaiman, Rosa M. Sánchez-Hernández, Marianne Stef, Gilles Lambert, Fernando Civeira, Cesar Martín, Eusko Jaurlaritza, Instituto de Salud Carlos III, Fundación Biofísica Bizkaia, and Universidad del País Vasco
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Hyperlipoproteinemia Type II ,Leucine repetition ,Cholesterol ,Metabolism ,Receptors, LDL ,Leucine ,Lipoproteins ,Hypercholesterolemia ,Humans ,Cholesterol, LDL ,Proprotein Convertase 9 ,Protein Sorting Signals ,Cardiology and Cardiovascular Medicine - Abstract
[Background] PCSK9 (Proprotein convertase subtilisin/kexin type 9) regulates LDL-C (low-density lipoprotein cholesterol) metabolism by targeting LDLr (LDL receptor) for lysosomal degradation. PCSK9 gain-of-function variants cause autosomal dominant hypercholesterolemia by reducing LDLr levels, the D374Y variant being the most severe, while loss-of-function variants are associated with low LDL-C levels. Gain-of-function and loss-of-function activities have also been attributed to variants occurring in the PCSK9 signal peptide. Among them, L11 is a very rare PCSK9 variant that seems to increase LDL-C values in a moderate way causing mild hypercholesterolemia., [Methods] Using molecular biology and biophysics methodologies, activities of L8 and L11 variants, both located in the leucine repetition stretch of the signal peptide, have been extensively characterized in vitro., [Results] L8 variant is not associated with increased LDLr activity, whereas L11 activity is increased by ≈20% compared with wt PCSK9. The results suggest that the L11 variant reduces LDLr levels intracellularly by a process resulting from impaired cleavage of the signal peptide. This would lead to less efficient LDLr transport to the cell membrane and promote LDLr intracellular degradation., [Conclusions] Deletion of a leucine in the signal peptide in L8 variant does not affect PCSK9 activity, whereas the leucine duplication in the L11 variant enhances LDLr intracellular degradation. These findings highlight the importance of deep in vitro characterization of PCSK9 genetic variants to determine pathogenicity and improve clinical diagnosis and therapy of inherited familial hypercholesterolemia disease., This work was supported by the Basque Government (Grupos Consolidados IT-1264-19) and Instituto de Salud Carlos III: CIBERCV and FIS PI19/0069. U. Galicia-Garcia was supported by Fundación Biofísica Bizkaia. A. Benito-Vicente was supported by Programa de especialización de Personal Investigador Doctor en la UPV/EHU (2019) 2019-2020. S. Jebari-Benslaiman and A. Larrea-Sebal were supported by a grant PIF (2017–2018) and (2019-2020), Gobierno Vasco, respectively. A.L-S was partially supported by Fundación Biofísica Bizkaia.
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- 2022
35. Leu22_Leu23 Duplication at the Signal Peptide of PCSK9 Promotes Intracellular Degradation of LDLr and Autosomal Dominant Hypercholesterolemia
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Benito-Vicente, Asier, primary, Uribe, Kepa B., additional, Larrea-Sebal, Asier, additional, Palacios, Lourdes, additional, Cenarro, Ana, additional, Calle, Xabier, additional, Galicia-Garcia, Unai, additional, Jebari-Benslaiman, Shifa, additional, Sánchez-Hernández, Rosa M., additional, Stef, Marianne, additional, Lambert, Gilles, additional, Civeira, Fernando, additional, and Martín, Cesar, additional
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- 2022
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36. Pathophysiology of Atherosclerosis
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Bioquímica y biología molecular, Biokimika eta biologia molekularra, Jebari Benslaiman, Shifa, Galicia García, Unai, Larrea Sebal, Asier, Rekondo Olaetxea, Javier, Alloza Moral, Iraide, Vandenbroeck, Koen, Benito Vicente, Asier, Martín Plágaro, César Augusto, Bioquímica y biología molecular, Biokimika eta biologia molekularra, Jebari Benslaiman, Shifa, Galicia García, Unai, Larrea Sebal, Asier, Rekondo Olaetxea, Javier, Alloza Moral, Iraide, Vandenbroeck, Koen, Benito Vicente, Asier, and Martín Plágaro, César Augusto
- Abstract
Atherosclerosis is the main risk factor for cardiovascular disease (CVD), which is the leading cause of mortality worldwide. Atherosclerosis is initiated by endothelium activation and, followed by a cascade of events (accumulation of lipids, fibrous elements, and calcification), triggers the vessel narrowing and activation of inflammatory pathways. The resultant atheroma plaque, along with these processes, results in cardiovascular complications. This review focuses on the different stages of atherosclerosis development, ranging from endothelial dysfunction to plaque rupture. In addition, the post-transcriptional regulation and modulation of atheroma plaque by microRNAs and lncRNAs, the role of microbiota, and the importance of sex as a crucial risk factor in atherosclerosis are covered here in order to provide a global view of the disease.
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- 2022
37. The Arg499His gain-of-function mutation in the C-terminal domain of PCSK9
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Unai Galicia-Garcia, Asier Benito-Vicente, F. Javier Nóvoa, Shifa Jebari, Mauro Boronat, Maria Donata Di Taranto, Itziar Lamiquiz-Moneo, Kepa B. Uribe, Ana M. Wägner, César Martín, Fernando Civeira, Rosa M. Sánchez-Hernández, Asier Larrea-Sebal, Giuliana Fortunato, Sanchez-Hernandez, R. M., Di Taranto, M. D., Benito-Vicente, A., Uribe, K. B., Lamiquiz-Moneo, I., Larrea-Sebal, A., Jebari, S., Galicia-Garcia, U., Novoa, F. J., Boronat, M., Wagner, A. M., Civeira, F., Martin, C., and Fortunato, G.
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0301 basic medicine ,Heterozygote ,Apolipoprotein B ,Familial hypercholesterolemia ,030204 cardiovascular system & hematology ,Arginine ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Protein Domains ,Genetic ,medicine ,Humans ,Histidine ,Dyslipemia ,Functional assay ,Child ,Family Health ,biology ,Cholesterol ,PCSK9 ,Cell Membrane ,HEK 293 cells ,Hep G2 Cells ,Middle Aged ,Lipid ,medicine.disease ,Proprotein convertase ,Molecular biology ,Culture Media ,Pedigree ,HEK293 Cells ,030104 developmental biology ,Italy ,Receptors, LDL ,chemistry ,Spain ,Gain of Function Mutation ,LDL receptor ,biology.protein ,Kexin ,Female ,lipids (amino acids, peptides, and proteins) ,Gene expression ,Proprotein Convertase 9 ,Cardiology and Cardiovascular Medicine ,Mutations - Abstract
Background and aims Familial hypercholesterolemia (FH) is a monogenic disease characterized by high levels of low-density lipoprotein cholesterol and premature atherosclerotic cardiovascular disease. FH is caused by loss of function mutations in genes encoding LDL receptor (LDLR), and Apolipoprotein B (APOB) or gain of function (GOF) mutations in proprotein convertase subtilisin/kexin type 9 (PCSK9). In this study, we identified a novel variant in PCSK9, p.(Arg499His), located in the C-terminal domain, in two unrelated FH patients from Spain and Italy. Methods We studied familial segregation and determined variant activity in vitro. Results We determined PCSK9 expression, secretion and activity of the variant in transfected HEK293 cells; extracellular activity of the recombinant p.(Arg499His) PCSK9 variant in HEK 293 and HepG2 cells; PCSK9 affinity to the LDL receptor at neutral and acidic pH; the mechanism of action of the p.(Arg499His) PCSK9 variant by co-transfection with a soluble construct of the LDL receptor and by determining total PCSK9 intracellular accumulation when endosomal acidification is impaired and when an excess of soluble LDLr is present in the culture medium. Our results show high LDL-C concentrations and FH phenotype in p.(Arg499His) carriers. In vitro functional characterization shows that p.(Arg499His) PCSK9 variant causes a reduction in LDLr expression and LDL uptake. An intracellular activity for this variant is also shown when blocking the activity of secreted PCSK9 and by inhibiting endosomal acidification. Conclusions We demonstrated that p.(Arg499His) PCSK9 variant causes a direct intracellular degradation of LDLr therefore causing FH by reducing LDLr availability.
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- 2019
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38. Pathophysiology of Atherosclerosis
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Jebari-Benslaiman, Shifa, primary, Galicia-García, Unai, additional, Larrea-Sebal, Asier, additional, Olaetxea, Javier Rekondo, additional, Alloza, Iraide, additional, Vandenbroeck, Koen, additional, Benito-Vicente, Asier, additional, and Martín, César, additional
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- 2022
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39. Pathophysiology of Atherosclerosis
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Shifa Jebari-Benslaiman, Unai Galicia-García, Asier Larrea-Sebal, Javier Rekondo Olaetxea, Iraide Alloza, Koen Vandenbroeck, Asier Benito-Vicente, César Martín, Eusko Jaurlaritza, Universidad del País Vasco, and Ministerio de Universidades (España)
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microRNA ,Organic Chemistry ,Calcinosis ,General Medicine ,Atherosclerosis ,Catalysis ,Plaque, Atherosclerotic ,endothelial dysfunction ,Computer Science Applications ,ocLDL ,Inorganic Chemistry ,lncRNA ,Cardiovascular Diseases ,Risk Factors ,microbiota ,Humans ,risk factors ,Physical and Theoretical Chemistry ,atherosclerosis ,atheroma plaque ,Molecular Biology ,Spectroscopy - Abstract
Atherosclerosis is the main risk factor for cardiovascular disease (CVD), which is the leading cause of mortality worldwide. Atherosclerosis is initiated by endothelium activation and, followed by a cascade of events (accumulation of lipids, fibrous elements, and calcification), triggers the vessel narrowing and activation of inflammatory pathways. The resultant atheroma plaque, along with these processes, results in cardiovascular complications. This review focuses on the different stages of atherosclerosis development, ranging from endothelial dysfunction to plaque rupture. In addition, the post-transcriptional regulation and modulation of atheroma plaque by microRNAs and lncRNAs, the role of microbiota, and the importance of sex as a crucial risk factor in atherosclerosis are covered here in order to provide a global view of the disease., This work was supported by the Basque Government (Grupos Consolidados IT-1264-19). A.B.-V. was supported by Programa de especialización de Personal Investigador Doctor en la UPV/EHU (2019) 2019/2020; U.G-G. was supported by Margarita Salas Grant; and S.J. and A.L-S were supported by a grant PIF (2017–2018) and PIF (2019–2020) Gobierno Vasco, respectively.
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- 2022
40. Contributors
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Luis G. Aguayo, Marium Ahmed, Mohamed H. Ahmed, Musaab Ahmed, Hélio M.T. Albuquerque, Alicia Alonso, Rana Ashkar, Fodil Azzaz, Carlos J. Baier, Francisco J. Barrantes, Małgorzata Bednarska-Makaruk, Andrew S. Bell, Asier Benito-Vicente, Michael F. Brown, Anna N. Bukiya, Carlos F. Burgos, Henri Chahinian, Waranya Chatuphonprasert, Parkson Lee-Gau Chong, Arrigo F.G. Cicero, Ivan R. Cincione, Tatiana M. Clemente, George A. Cook, Zoe Cournia, Coralie Di Scala, Milka Doktorova, Fathima T. Doole, Alex M. Dopico, Alexandros A. Drosos, Hong Du, Marshall B. Elam, Isabella Ellinger, Jacques Fantini, Filipe Ferrari, Unai Galicia-Garcia, Aritz B. García-Arribas, Stacey D. Gilk, Félix M. Goñi, Juliana Gonzalez-Sanmiguel, Gregory A. Grabowski, Sudipta Gupta, Tina Herfel, DanRong Hu, Juyang Huang, Shifa Jebari-Benslaiman, Qiu-Xing Jiang, Samantha Karr, George Khelashvili, Sofia Kiriakidi, Tamas Kovacs, Teshani Kumarage, Claude K. Lardinois, Asier Larrea-Sebal, Irena Levitan, Hanxuan Li, Wei Li, Falk W. Lohoff, Agnieszka Ługowska, Cesar Martin, Vítor M. Martins, Thomas Mavromoustakos, Mark T. Mc Auley, Dushyant Mital, Bob M. Moore, Amy E. Morgan, Ole G. Mouritsen, Steven Mysiewicz, Kelsey C. North, Emma M. O’Connell, Marta Pasenkiewicz-Gierula, ZhiYong Qian, Jorge P. Roa, Avia Rosenhouse-Dantsker, Clementina M.M. Santos, Artur M.S. Silva, Alexandria Slayden, Ghada A. Soliman, Natalia Stein, Ricardo Stein, Witold K. Subczynski, István P. Sugár, Lajos Szente, Kepa B. Uribe, Zoltan Varga, Aliki I. Venetsanopoulou, Paraskevi V. Voulgari, Francine K. Welty, Justyna Widomska, Nouara Yahi, Zdenek Zadak, and Florina Zakany
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- 2022
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41. Contribution of APOEGenetic Variants to Dyslipidemia
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Bea, Ana M., Larrea-Sebal, Asier, Marco-Benedi, Victoria, Uribe, Kepa B., Galicia-Garcia, Unai, Lamiquiz-Moneo, Itziar, Laclaustra, Martín, Moreno-Franco, Belén, Fernandez-Corredoira, Pablo, Olmos, Salvador, Civeira, Fernando, Martin, César, and Cenarro, Ana
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- 2023
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42. Boosting Cholesterol Efflux from Foam Cells by Sequential Administration of rHDL to Deliver MicroRNA and to Remove Cholesterol in a Triple‐Cell 2D Atherosclerosis Model
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Jebari‐Benslaiman, Shifa, primary, Uribe, Kepa B., additional, Benito‐Vicente, Asier, additional, Galicia‐Garcia, Unai, additional, Larrea‐Sebal, Asier, additional, Santin, Izortze, additional, Alloza, Iraide, additional, Vandenbroeck, Koen, additional, Ostolaza, Helena, additional, and Martín, César, additional
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- 2022
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43. A Systematic Approach to Assess the Activity and Classification of PCSK9 Variants
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Uribe, Kepa B., primary, Chemello, Kevin, additional, Larrea-Sebal, Asier, additional, Benito-Vicente, Asier, additional, Galicia-Garcia, Unai, additional, Bourane, Steeve, additional, Jaafar, Ali K., additional, Lambert, Gilles, additional, and Martín, César, additional
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- 2021
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44. MLb-LDLr: A Machine Learning Model for Predicting the Pathogenicity of LDLr Missense Variants
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Larrea-Sebal, A., Benito-Vicente, A., Fernandez-Higuero, J.A., Jebari-Benslaiman, S., Galicia-Garcia, U., Uribe, K.B., Cenarro, A., Ostolaza, H., Civeira, F., Arrasate, S., González-Díaz, H., Martín, C., Eusko Jaurlaritza, Universidad del País Vasco, and Fundación Biofísica Bizkaia
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Machine learning software ,AUROC, area under the receiver operating curve ,Familial hypercholesterolemia ,nutritional and metabolic diseases ,LDL receptor ,LNN, linear neural networks ,ESEA, Excel Solver Evolutionary algorithm ,ANN, artificial neural network ,FH, familial hypercholesterolemia ,LDLr, low-density lipoprotein receptor ,UTR, untranslated region ,RBF, radial basis function ,MLb-LDLr, machine-learning–based low-density lipoprotein receptor software ,LDL, low-density lipoprotein ,Pathogenicity ,lipids (amino acids, peptides, and proteins) ,EGS, expert-guided selection ,ML, machine learning ,MLP, multilayer perceptron ,Prediction ,LDA, linear discriminant analysis - Abstract
Untreated familial hypercholesterolemia (FH) leads to atherosclerosis and early cardiovascular disease. Mutations in the low-density lipoprotein receptor (LDLr) gene constitute the major cause of FH, and the high number of mutations already described in the LDLr makes necessary cascade screening or in vitro functional characterization to provide a definitive diagnosis. Implementation of high-predicting capacity software constitutes a valuable approach for assessing pathogenicity of LDLr variants to help in the early diagnosis and management of FH disease. This work provides a reliable machine learning model to accurately predict the pathogenicity of LDLr missense variants with specificity of 92.5% and sensitivity of 91.6%., This study was supported by grants from the Basque Government (Cesar Martin, Grupos Consolidados IT-1264-19). Mr Larrea-Sebal was supported by a FPI grant from Gobierno Vasco (2019–2020). Dr Benito-Vicente was supported by Programa de especialización de Personal Investigador Doctor en la UPV/EHU (2019) 2019-2020. Dr Galicia-Garcia was supported by Fundación Biofísica Bizkaia. Ms Jebari-Benslaiman was supported by grant PIF (2017–2018), Gobierno Vasco.
- Published
- 2021
45. Nanopartikulen lipido konposizioak rHDLen kolesterol kanpora-fluxuaren efizientzian eragina du
- Author
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Shifa Jebari Benslaiman, Asier Larrea Sebal, Iraide Alloza Moral, Koen Vandenbroeck, Asier Benito Vicente, Elena Ostolaza Etxabe, Cesar Martin Plagaro, Unai Galicia Garcia, and Kepa B. Uribe
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- 2021
- Full Text
- View/download PDF
46. MLb-LDLr: LDLaren hartzaile aldaeren eragina aurresateko ikasketa automatikoko eredua
- Author
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Shifa Jebari Benslaiman, Kepa B. Uribe, Humberto González Díaz, Asier Larrea Sebal, Rocio Alonso Estraba, Asier Benito Vicente, Unai Galicia Garcia, Cesar Martin Plagaro, and Sonia Arrasate Gil
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- 2021
- Full Text
- View/download PDF
47. MLb-LDLr
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Larrea-Sebal, Asier, primary, Benito-Vicente, Asier, additional, Fernandez-Higuero, José A., additional, Jebari-Benslaiman, Shifa, additional, Galicia-Garcia, Unai, additional, Uribe, Kepa B., additional, Cenarro, Ana, additional, Ostolaza, Helena, additional, Civeira, Fernando, additional, Arrasate, Sonia, additional, González-Díaz, Humberto, additional, and Martín, César, additional
- Published
- 2021
- Full Text
- View/download PDF
48. Lipoprotein(a) in hereditary hypercholesterolemia: Influence of the genetic cause, defective gene and type of mutation
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Victoria Marco-Benedí, Itziar Lamiquiz-Moneo, Pilar Calmarza, Núria Plana, Ana Cenarro, César Martín, Xavier Pintó, Ana M. Bea, Martín Laclaustra, Fernando Civeira, Estíbaliz Jarauta, Asier Larrea-Sebal, Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Centro de Investigación Biomédica en Red Enfermedades Cardiovaculares (España), Gobierno de Aragón, and European Commission
- Subjects
Apolipoprotein E ,Adult ,medicine.medical_specialty ,Apolipoprotein B ,Hypercholesterolemia ,Familial hypercholesterolemia ,Polygenic hypercholesterolemia ,Internal medicine ,medicine ,Humans ,Low-density lipoprotein receptor ,Apolipoproteins B ,biology ,business.industry ,PCSK9 ,Score ,Lipoprotein(a) ,medicine.disease ,Endocrinology ,Cross-Sectional Studies ,Receptors, LDL ,Cohort ,LDL receptor ,Mutation ,biology.protein ,Polygenic ,Heterozygous familial hypercholesterolemia ,Proprotein Convertase 9 ,Cardiology and Cardiovascular Medicine ,business ,Dyslipidemia - Abstract
[Background and aims] Lipoprotein(a) [Lp(a)] concentration in heterozygous familial hypercholesterolemia (heFH) is not well established. Whether the genetic defect responsible for heFH plays a role in Lp(a) concentration is unknown. We aimed to compare Lp(a) in controls from a healthy population, in genetically diagnosed heFH and mutation-negative hypercholesterolemia subjects, and to assess the influence on Lp(a) of the genetic defect responsible for heFH., [Methods] We conducted a cross-sectional study, performed in a lipid clinic in Spain. We studied adults with suspected heFH and a genetic study of FH genes (LDLR, APOB, APOE and PCSK9) and controls from de Aragon Workers’ Health Study. HeFH patients from the Dyslipidemia Registry of the Spanish Atherosclerosis Society (SEA) were used as validation cohort., [Results] Adjusted geometric means (95% confidence interval) of Lp(a) in controls (n = 1059), heFH (n = 500), and mutation-negative subjects (n = 860) were 14.9 mg/dL (13.6, 16.4), 21.9 mg/dL (18.1, 25.6) and 37.4 mg/dL (33.3, 42.1), p < 0.001 in all comparisons. Among heFH subjects, APOB-dependent FH showed the highest Lp(a), 36.5 mg/dL (22.0, 60.8), followed by LDLR-dependent FH, 21.7 mg/dL (17.9, 26.4). These differences were also observed in heFH from the SEA cohort. The number of plasminogen-like kringle IV type−2 repeats of LPA, the hypercholesterolemia polygenic score or LDLc concentration did not explain these differences. In LDLR-dependent FH, Lp(a) levels were not different depending on the affected protein domain., [Conclusions] Lp(a) is elevated in mutation-negative subjects and in heFH. The concentration of Lp(a) in heFH varies in relation to the responsible gene. Higher Lp(a) in heFH is not explained by their higher LDLc., This study was supported by grants from the Spanish Ministry of Economy and Competitiveness PI 18/01777, PI 19/00694 and CIBERCV; and Gobierno de Aragón B-14. These projects are co-financed by Instituto de Salud Carlos III and the European Regional Development Fund (ERDF) of the European Union ‘‘A way to make Europe”.
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- 2021
49. Molecular mechanisms of lipotoxicity-induced pancreatic β-cell dysfunction
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Asier, Benito-Vicente, Shifa, Jebari-Benslaiman, Unai, Galicia-Garcia, Asier, Larrea-Sebal, Kepa B, Uribe, and Cesar, Martin
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Glucose ,Insulin-Secreting Cells ,Insulin Secretion ,Metabolome ,Animals ,Humans ,Lipids ,Signal Transduction - Abstract
Type 2 diabetes (T2D), a heterogeneous disorder derived from metabolic dysfunctions, leads to a glucose overflow in the circulation due to both defective insulin secretion and peripheral insulin resistance. One of the critical risk factor for T2D is obesity, which represents a global epidemic that has nearly tripled since 1975. Obesity is characterized by chronically elevated free fatty acid (FFA) levels, which cause deleterious effects on glucose homeostasis referred to as lipotoxicity. Here, we review the physiological FFA roles onto glucose-stimulated insulin secretion (GSIS) and the pathological ones affecting many steps of the mechanisms and modulation of GSIS. We also describe in vitro and in vivo experimental evidences addressing lipotoxicity in β-cells and the role of saturation and chain length of FFA on the potency of GSIS stimulation. The molecular mechanisms underpinning lipotoxic-β-cell dysfunction are also reviewed. Among them, endoplasmic reticulum stress, oxidative stress and mitochondrial dysfunction, inflammation, impaired autophagy and β-cell dedifferentiation. Finally therapeutic strategies for the β-cells dysfunctions such as the use of metformin, glucagon-like peptide 1, thiazolidinediones, anti-inflammatory drugs, chemical chaperones and weight are discussed.
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- 2021
50. MLb-LDLr: LDLaren hartzaile aldaeren eragina aurresateko ikasketa automatikoko eredua
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Larrea Sebal, Asier, primary, Galicia Garcia, Unai, additional, Jebari Benslaiman, Shifa, additional, Alonso Estraba, Rocio, additional, Benito Vicente, Asier, additional, B. Uribe, Kepa, additional, Arrasate Gil, Sonia, additional, González Díaz, Humberto, additional, and Martin Plagaro, Cesar, additional
- Published
- 2021
- Full Text
- View/download PDF
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