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Objective: The Global Adult Tobacco Survey conducted in India has divulged that 28.6% of the populace aged 15 years and above partakes in tobacco consumption in various modalities. Despite the availability of numerous studies on the correlation between smoking and hypertension, the nexus between tobacco smoking and hypertension remains enigmatic. Smoking has predominantly been linked to blood pressure, with scant investigations exploring the plausible association that may subsist between smoking and pulse pressure., Methodology: This study is based on secondary data analysis from the fifth National Family Health Survey (NFHS-5). 17 Field Agencies gathered information from 636,699 households, 724,115 women, and 101,839 men. The data related to only men was included and analysed in this present study., Results: Male participants had a mean age of 32.2+1.2 years, an average waist circumference of 80.4+12.2 cm, and mean systolic and diastolic blood pressure of 123.4+13.8 mmHg and 80.5+10.2 mmHg. Daily smokers had a slightly higher likelihood of hypertension compared to non-smokers (OR = 1.2, p <0.001). Male quitters had significantly lower odds of hypertension (OR = 0.9, p <0.001). Quitters had reduced odds of narrow pulse pressure but increased odds of wide pulse pressure (OR = 0.81 and 1.14, respectively)., Conclusion: The study found that regular smoking was associated with hypertension, while factors such as age, obesity, urban dwelling, wealth, and tribal residence were linked to increased blood pressure. Male quitters had a lower likelihood of hypertension, and middle-aged men and those with central obesity showed distinct associations with deranged pulse pressure., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2024 Lal et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)

Cell lines are important bioresources to study the key biological processes in the areas like virology, pathology, immunology, toxicology, biotechnology, endocrinology and developmental biology. Cell lines developed from fish organs are utilized as a model in vitro system in disease surveillance programs, pharmacology, drug screening and resolving cases of metabolic abnormalities. During last decade, there were consistent efforts made globally to develop new fish cell lines from different organs like brain, eye muscles, fin, gill, heart, kidney, liver, skin, spleen, swim bladder, testes, vertebra etc. This increased use and development of cell lines necessitated the establishment of cell line depositories to store/preserve them and assure their availability to the researchers. These depositories are a source of authenticated and characterized cell lines with set protocols for material transfer agreements, maintenance and shipping as well as logistics enabling cellular research. Hence, it is important to cryopreserve and maintain cell lines in depositories and make them available to the research community. The present article reviews the current status of the fish cell lines available in different depositories across the world, along with the prominent role of cell lines in conservation of life on land or below water., Supplementary Information: The online version contains supplementary material available at 10.1007/s10616-023-00601-2., Competing Interests: Conflict of interestThere is no financial or non-financial conflict of interest among the authors for publication of this manuscript., (© The Author(s), under exclusive licence to Springer Nature B.V. 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.)

The complete mitochondrial genome of the freshwater fish species Labeo rajasthanicus was obtained, using Illumina NovaSeq 6000 with 2 × 150 bp paired-end sequencing. The mitogenome of L. rajasthanicus is 16,738 bp in length (GenBank accession no.: OQ834146), comprised of 13 protein-coding genes, 22 tRNA genes, two rRNA genes, and a control region, i.e. D-loop. The arrangement of genes was found to be identical to other Cypriniformes fish mitogenome, available in the NCBI database. The taxonomic status of L. rajasthanicus as a valid species was debated by some researchers and it was considered a synonym of L. boggut. However, phylogenetic analysis in the present study supports the species validity of L. rajasthanicus , as it showed a distinct node well separated from L. boggut and supported by a high bootstrap value. Furtherly, the pairwise genetic divergence among studied species showed the divergence between L. rajasthanicus and L. boggut as 1.6% whereas the minimum divergence was found to be 0.13% with L. dussumieri followed by L. fimbriatus (0.58%) and L. gonius (0.63%). The complete mitogenome of L. rajasthanicus will also be useful as a baseline reference genome for the reconstruction and annotation of the mitogenome of other Labeo species., Competing Interests: The authors declare no conflicts of interest., (© 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.)

A new species of deep-water conger eel, Rhynchoconger bicoloratus sp. nov., is described herein based on three specimens collected from the deep-sea trawlers landing at Kalamukku fishing harbour, off Kochi, Arabian Sea, from a depth beyond 200 m. The new species is distinguished from its congeners by having the following combination of characters: head larger than trunk, rictus at posterior margin of pupil, dorsal fin origin slightly before the pectoral fin insertion, eye diameter 1.7-1.9 times in snout length, ethmovomerine teeth patch broader than long with 41-44 recurved pointed teeth in six or seven rows, vomerine teeth patch pentagonal shaped with single tooth on posterior end, 35 pre-anal vertebrae, body bicoloured, peritoneum and stomach black. Genetically, the new species differs from its congeners with a divergence of 12.9%-20.1% in the mitochondrial COI gene., (© 2023 Fisheries Society of the British Isles.)

Background: Butter catfish (Ompok bimaculatus) is a preferred species in South East Asia, with huge aquaculture potential. However, there is limited information about genetic stock composition due to insufficient markers. The goal of this study was to develop de novo microsatellite markers., Methods and Results: For sequencing, genomic SMRT bell libraries (1.5 Kbp size) were prepared for O. bimaculatus. A total of 114 SSR containing sequences were used for primer designing. Polymorphic loci were validated by genotyping 83 individuals from four distant riverine populations, viz., Brahmaputra, Bichiya, Gomti and Kaveri. A total of 30 microsatellite loci were polymorphic, of which five were found to be associated with functional genes and eight (four positive and four negative) loci were found to be under selection pressure. A total of 115 alleles were detected in all loci and PIC ranged from 0.539 to 0.927 and pair-wise F ST values from 0.1267 to 0.26002 (p < 0.001), with an overall F ST value of 0.17047, indicating the presence of population sub-structure. Cross-species transferability of 29 loci (96.67%) was successful in congener species, Ompok pabda., Conclusion: The novel SSR markers developed in this study would facilitate stock characterization of natural populations, to be used in future selection breeding programs and planning conservation strategies in these species. Identified non-neutral markers will give insights into the effect of local adaptation on genetic differentiation in the natural population of this species., (© 2022. The Author(s), under exclusive licence to Springer Nature B.V.)

Sediment export and retention are important ecosystem processes in any landscape causing soil erosion and sediment loading in waterways consequently affecting the health of aquatic habitats downstream. The present study quantifies sediment export and retention in four watersheds, viz., Hivra, Satrapur, Konta, and Jagdalpur in the Godavari River Basin, India, using Integrated Valuation of Ecosystem Services and Trade-offs (InVEST) ecosystem service modelling tool. The  results revealed that the sediment export yields ranged from 0.75 (Hivra) to 2.77 t/ha/year (Jagdalpur). The mean deviation between modelled values and observed sediment export yield was - 11.11%, which indicated good prediction by the model. The sediment retention ranged from 16.04 (Hivra) to 101.52 t/ha/year (Konta). Most sediment export and retention occurred on cropland or shrubland land use land cover types in all four watersheds. For decision making on soil conservation, soil loss tolerance limits have been established for these watersheds. For aquatic habitats, sediment concentration is considered more important than the total annual sediment export, since water turbidity is an important determinant of water quality, and the aquatic lives therein. Therefore, the temporal distribution of rainfall and corresponding sediment export becomes important, since these two factors determine the sediment concentration as well as turbidity in the waterbody. In current study, "Precipitation Concentration Index adjusted Sediment Export Yield Index" was developed to account for the effects of the temporal rainfall distribution and its impact on sediment export. The index for four watersheds was quantified (Hivra > Satrapur > Konta > Jagdalpur), which is concordant to the turbidity values reported by respective gauge stations. Thus, the proposed index can efficiently capture the impact of temporal rainfall distribution on sediment export, and consequently its effect on water turbidity. The study revealed the potential of InVEST model to quantify the sediment export and retention in the watersheds studied. Together with the proposed index, it would help the policy makers in making informed decisions for planning conservation strategies for aquatic biodiversity., (© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)

The riverine ecosystem provides multiple benefits to human community and contributes to the sustainable development of the ecoregion. The growing dependency on these ecosystems has largely contributed to aggravating the ecological risks, habitat degradation, and loss of ecosystem services. The present study evaluates the ecological risk emanating from nine anthropogenic stressors including river use, hydro-morphology, catchment pollution, and biological stressor on river Pranhita in Godavari Basin of Peninsular India using InVEST (Integrated Valuation of Ecosystem Services and Tradeoffs) Habitat Risk Assessment model. The primary field survey, remote sensing, and secondary data-assisted spatial modelling results revealed low ecological risk (R = 0.65 of 3) in river Pranhita due to anthropogenic activities. Sediment loading, the inflow of nitrogen, and habitat fragmentation were the major stressors with relatively higher risk score (> 1); influence on a sizeable portion of riverine habitat (29-75% of the total area under high-risk zone) indicates the mounting threat from catchment activities. The low-risk value observed in protected river reaches as compared to unprotected areas is likely to be influenced by the abundant presence of intact riparian vegetation which mitigate the catchment stressors and minimal anthropogenic activity within protected areas. This study demonstrates the application of InVEST HRA model for ecological risk assessment of riverine ecosystems and fish assemblages along with their input data generation framework. This has the potential for prioritization of sensitive habitats based on computed ecological risk and stressor identification based on their exposure and consequences for developing appropriate mitigation measures. This model is spatially explicit and accommodates user-defined criteria for ecosystem-level assessment at a regional and national scale to facilitate the resource managers and policymakers for conservation and restoration planning and implementation of targeted management measures for sustainable development., (© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)

A new species of Conger eel is described from a single specimen (569 mm total length) collected off Kanyakumari, Southwest coast of India, Arabian Sea. The following characters distinguish the new species from other congeners: dorsal-fin origin behind the pectoral-fin tip; head larger, 18.5% TL; longer predorsal length 24.0% TL; relatively shorter trunk, uniserial teeth at the posterior end of vomerine patch; body blackish to dark brown; pectoral fin completely darker; cephalic pores rim whitish; SO pores 3; IO pores 6; pectoral rays 19; total vertebrae 141+. Genetic analysis of the mitochondrial COI gene revealed that the new species is closely related to Conger verreauxi Kaup, 1856 and Conger macrocephalus Kanazawa, 1958, with a genetic divergence of 5.7% and 5.9% respectively.

Tenualosa ilisha (Hilsa shad), an anadromous fish, usually inhabits coastal and estuarine waters, and migrates to freshwater for spawning. In this study, large-scale gill transcriptome analyses from three salinity regions, i.e., fresh, brackish and marine water, revealed 3277 differentially expressed genes (DEGs), out of which 232 were found to be common between marine vs freshwater and brackish vs freshwater. These genes were mapped into 54 KEGG Pathways, and the most significant of these were focal adhesion, adherens junction, tight junction, and PI3K-Akt signaling pathways. A total of 24 osmoregulatory genes were found to be differentially expressed in different habitats. The gene members of slc16 and slc2 families showed a dissimilar pattern of expressions, while two claudin genes (cldn11 & cldn10), transmembrane tm56b, and voltage-gated potassium channel gene kcna10 were downregulated in freshwater samples, as compared to that of brackish and marine environment. Protein-protein interaction (PPI) network analysis of 232 DEGs showed 101 genes to be involved in PPI, while fn1 gene was found to be interacting with the highest number of genes (36). Twenty-five hub genes belonged to 12 functional groups, with muscle structure development with seven genes, forming the major group. These results provided valuable information about the genes, potentially involved in the molecular mechanisms regulating water homeostasis in gills, during migration for spawning and low-salinity adaptation in Hilsa shad. These genes may form the basis for the bio-marker development for adaptation to the stress levied by major environmental changes, due to hatchery/culture conditions., (© 2023. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.)

A new species of the alpheid genus Alpheus Fabricius, 1798, Alpheus sulcipalma sp. nov., is described and illustrated based on the specimens collected from the intertidal zone of Agatti Island, Lakshadweep, India at 0.5-1.0 m depth. This species belongs to the A. edwardsii group by absences of tooth in the orbital hoods and presence of compressed major chela with dorsal and ventral notches. Alpheus sulcipalma sp. nov. is morphologically closely related with A. pacificus Dana, 1852, absence of balaeniceps crests in the minor chela and absences of spine in the merus of major pereiopod of both sexes. However, the new species differs from A. pacificus in presence of strong and broad triangular groove on the dorsolateral and dorsomesial surface of the palm of major chela; length ratio and armature of fingers and palm of minor chela, carpus segments of second and third pereiopods and telson length. The results of phylogenetic analyses using partial sequences of mitochondrial COI gene data compared between A. sulcipalma sp. nov. with congener species which strongly support the description of new species with available limited sequences. The interspecific genetic divergences of the COI gene for A. sulcipalma sp. nov. and A. pacificus were observed higher in ranges (11.1-28.9%).

Milkfish ( Chanos chanos ) belongs to the family Chanidae and it is a potential candidate species for aquaculture with the best biological characteristics. This study investigates the genetic diversity and population structure of C . chanos along the Indian coast using cytochrome b (cyt b) sequences of mitochondrial DNA (mtDNA). A total of 90 samples collected from five different locations across the Indian coast were sequenced for analysis using cyt b. The sequencing of a 1100-bp cyt b mtDNA fragment revealed the presence of 38 haplotypes with a haplotype diversity value of 0.835 and a nucleotide diversity value of 0.00400. The variation within and among populations accounted for about 97.33% and 2.67%, respectively. The fixation index analysis indicated that there is no significant genetic divergence among the populations from different geographical areas. Neighbour-joining tree analysis of the haplotype data showed no distinct patterns of phylogeographic structure. Results from this study indicated that there is a lack of genetic divergence between the populations of C . chanos along the Indian coast. The haplotype network showed star-like geneology which indicated the demographic expansion of the C . chanos population in these locations. The recent demographic expansion of the C . chanos population was also supported by the results of Tajima's D statistics. Results from this study can be used for planning effective strategies for the conservation and management of the C . chanos population in the wild.

The amyloodiniosis outbreak was documented with high mortality of percula clownfish ( Amphiprion percula ) and subsequently, various therapeutics were evaluated to control the infection. The affected fish exhibited symptoms such as discoloration of the skin and jerky movement with severe respiratory stress. Microscopic examination of the gill and body surface of the infested moribund fish showed the presence of brown coloured spherical shaped trophonts with the size range of 150-300 µM. Copper sulphate (10 ppm) and hydroxychloroquine phosphate (10 ppm) treatment with 14 days of continuous bath showed 76 ± 5.3 and 66 ± 4.3% survival rates. However, formalin (10 ppm) and malachite green (10 ppm) treated groups showed a survival of 41 ± 1.7 and 32.7 ± 1.2% respectively. The present results suggest that, use of copper sulphate to treat amyloodiniosis in clownfish will relatively more effective than other treatment options. The findings will be helpful to mitigate amyloodiniosis in marine finfish aquaculture, particularly marine ornamentals., Competing Interests: Conflict of interestThe authors declare that they have no conflict of interest., (© Indian Society for Parasitology 2022, Springer Nature or its licensor holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.)

A new species of the genus Pangasius, is described based on 17 specimens collected from the Cauvery River, India. It can be distinguished from its sister species from South and Southeast Asia, by its widely placed, small and rounded vomerine and palatine tooth plates, longer maxillary and mandibular barbels, greater vertebrae count 50 (vs. 44-48), and smaller caudal peduncle depth (6.5-8.2% SL vs. 9.89-13.09% SL). The tooth plates of the new species closely resembles that of Pangasius macronema but can be clearly distinguished from the latter by having lesser gill rakers (16-19 vs. 36-45); a smaller eye (2.4-4.4% SL vs. 5.2-9.6% SL); and larger adipose-fin base (1.5-2.9% SL vs. 0.1-1.2% SL). The mitochondrial cytochrome c oxidase (COI) gene sequence of the new species shows the genetic divergence of 3.5% and 5.1% from P. pangasius and P. silasi respectively, the two sister species found in South Asia and India. The species delimitation approaches, Poisson Tree Processes (PTP) and assemble species by automatic partitioning (ASAP) clearly resolved that the P . icaria is distinct from its sister species. Phylogenetic position of the species with its sister species was evaluated using maximum likelihood and Bayesian analysis. The discovery of this previously unknown species of genus Pangasius from the Cauvery River of peninsular India indicates important biogeographical insight that this genus migrated till the southern division of Western Ghats., Competing Interests: The authors declare there are no competing interests., (©2022 Ayyathurai et al.)

Rivers are dynamic ecosystems with diverse habitats that require ample connectivity to ensure the flow of ecosystem services, thus empowering the sustainable development of an entire basin. Geo-spatial tools offer powerful prospects for monitoring of aquatic ecosystems. The usefulness of Sentinel-2 datasets to assess river connectivity has been explored for an un-gauged seasonal river system. The present study was undertaken in five ecologically unique river reaches viz. Wainganga, Wardha, Pranhita, Godavari-mid and Manair in Godavari Basin in the Indian Deccan Plateau to map water spread dynamics at various time scales, i.e., fortnightly, monthly, seasonal, annual and demi-decadal during 2016-2021. The maximum value of perennial water spread per square kilometre of total floodplain area (2016-2021), determined using Sentinel-2 imageries, was observed in river Wardha (0.18) followed by Pranhita (0.12) and Wainganga (0.11). The water spread showed a decreasing trend, while the number of patches in the river corridor increased over time from post-monsoon to pre-monsoon season. The copious perennial habitat with relatively larger patches, incessant flow in river Pranhita and obstructed flow, large-sized patches reported in river Wardha during summer months, hold importance in terms of providing refuge to aquatic biota. This study provides evidence for the impact of water projects on spatio-temporal water spread dynamics in Godavari Basin. The demonstrated utility of Sentinel-2 imagery coupled with gauge station measurements for river continuity assessment and deep pool mapping would aid in enhancing our understanding on environmental flow at a spatial scale, which in turn would aid in effective river management to achieve the Sustainable Development Goals. The implications of this study for sustainable environmental management and limitations are also discussed., (© 2022. The Author(s), under exclusive licence to Springer Nature Switzerland AG.)

Ariosoma indicum sp. nov. is described herein based on 12 specimens [(335-433 mm total length (TL)] collected off the Arabian Sea of southwest coast of India and 7 specimens from Digha Mohana, off the Bay of Bengal of northeast coast of India. The new species is distinguished from congeners in having the following combination of the characters: anus positioned anterior to middle of total length, pre-anal length 40.0%-43.1% of TL; short wedge-shaped pointed vomerine teeth patch, three or four rows in anterior portion, tapering posteriorly with four uniserial teeth; supraorbital canal with four or five pores; pre-dorsal vertebrae 9-10; pre-anal vertebrae 49-53; total vertebrae 141-146; body greenish-brown in colour; extremities of the lower jaw with minute dark pigmentation patches before the rictus, bicoloured pectoral fin. A. indicum shares few characters with the Indian water species, Ariosoma gnanadossi, but readily differs from the latter in having more pre-anal vertebrae (49-53 vs. 47 in A. gnanadossi); fewer lateral-line pores (130-137 vs. 145); shorter tail (54.9%-57.9% TL vs. 60.1% TL); smaller eye (15.1%-17.7% HL vs. 19.2% HL); smaller interorbital width (11.8%-15.7% HL vs. 18.2% HL); longer upper jaw (26.9%-30.2% HL vs. 19.2% HL). In addition, molecular analysis using partial mitochondrial COI gene suggests that A. indicum is genetically closer to Ariosoma maurostigma and Ariosoma melanospilos with a divergence of 15.0% and 15.8%, respectively, and forms a well-supported monophyletic clade., (© 2022 Fisheries Society of the British Isles.)

The cleaning rock pool shrimp commonly inhabit the shallow waters of reef and crevices regions at 0.5-3.0 m depth. Recent exploration conducted off the Gulf of Mannar and Agatti Island yielded the species, Urocaridella antonbruunii (Bruce, 1967) from the bottom curve of the coral boulder at a depth of 0.5-1.0 m. This is the new record for the Gulf of Mannar and Lakshadweep waters. Major distinguishing morphological characters of the congener's were described and illustrated. The molecular analysis confirmed the species occurrence in Indian waters followed the intraspecific and interspecific genetic divergences (16S gene) were estimated between 0.3-2.1% for within species and 6.4-11.2% for between species respectively. Additionally, we updated and provided the illustrative key characters for all members of the genus Urocaridella.

Disease outbreaks caused by bacterial and viral pathogens is a major impediment to the sustainable growth of aquaculture. Rapid and accurate diagnosis of pathogens is crucial for the successful maintenance of fish health and productivity in aquaculture. This review manuscript provides a brief description of conventional disease diagnosis techniques and a detailed description of immunological techniques such as ELISA, immunofluorescence, immunohistochemistry and lateral flow immunoassay. Specific emphasis has been given to detail the molecular techniques, such as PCR and its variants, including the novel isothermal amplification techniques like LAMP and RPA, that can cater to the need of rapid and sensitive point-of-care diagnostics. Hybridization-based methods and molecular typing methods have also been discussed as they find specific applications in diagnostics. The potential of novel techniques such as MALDI-TOF-MS, flow cytometry, and nanotechnology-based methods have also been outlined as they are likely to revolutionise disease diagnosis in the future. This manuscript provides an update on the principle, strengths, weaknesses, applications and variations of each technique, so as to eliminate the qualms for the adoption of these techniques in aquaculture diagnostics., (Copyright © 2022 Elsevier B.V. All rights reserved.)

Chitala chitala (Hamilton, 1822) is an economically important food fish species occurring throughout Indian rivers, which also has ornamental value. This study focuses on morphological variations in C. chitala from seven river basins across India namely; Son, Tons, Ken, Brahmaputra, Ganga, Gomti and Gandak. A truss network was constructed by interconnecting nine landmarks to generate 36 morphometric variables extracted from digital images of specimens sampled from the study locations. Transformed truss measurements were subjected to principal component analysis (PCA), canonical discriminant function analysis (CDFA) and discriminant analyses of principal components (DAPC). DAPC function coefficients performed much better in capturing the variation pattern and discrimination between the rivers which was not achieved using CDFA. Eight truss variables were identified with significant and highest loading for truss variables on principal components and coefficients on discriminant function from DAPC contributing to maximum variation between the rivers. Performance graph and functional distribution of identified truss variables clearly indicated distinction between the rivers. Thin plate spline analysis and procrustes shape analysis further showed the variation in morphology between specimens across the rivers. The significant parameters differentiating specimens from different rivers were linked to dorsal fin origin, the base of the pectoral fin and the perpendicular point on the anal fin from the dorsal fin origin. Variation in the hydrodynamics of the rivers studied might be possibly affecting the fin kinematics and consequently leading to adaption seen as phenotypic variation in C. chitala . The results showcased in the present study shall help in better understanding of intra-specific diversity which is significant for management and conservation of a species., Competing Interests: The authors declare there are no competing interests. Abhinav Pathak and Nimisha Dutta are presently employed by Molecular Biological Sciences, Farelabs Private Limited. Pradipta Paul is presently employed by Department of Fisheries, West Bengal., (©2022 Chandran et al.)

Background: Perna viridis (Linnaeus, 1758), the Asian green mussel, is native to the Asia-Pacific region. The species is extensively distributed in the Indian subcontinent and is a candidate species for aquaculture in the Southeast Asian region. Availability of genetic information on wild populations is essential for the effective conservation and management of Perna species. The present study assessed the genetic variation and population structure across the distribution range of this species from the Indian peninsula by using microsatellite markers to determine the genetic structuring among the species., Methods: A total of 15 microsatellite loci with M13 labeling were used for the genetic characterization of P. viridis along Indian waters. Genotyped data were analyzed using analytical software to determine the genetic stocks and understand the genetic variability across the populations., Results: We identified 15 polymorphic markers to understand the genetic stocks and variability across Perna populations. The mean value of the observed heterozygosity (Hobs: 0.741) for all populations was closer to the expected heterozygosity (Hexp: 0.75). The pairwise Fst values between the west and east coasts of India varied significantly, indicating the existence of significant genetic structure between the populations., Conclusions: Genetic stock identification using software analysis exhibited two distinct stocks, one along the west coast (Arabian Sea) and another along the east coast (Bay of Bengal). Bottleneck analysis indicated the genetic stability of species in the wild. P. viridis is a commercially vital species in Indian peninsular regions. The present study suggests the adoption of stock-specific relaying programs of the species from Indian waters in future studies., (© 2022. The Author(s), under exclusive licence to Springer Nature B.V.)

A new congrid eel species, Ariosoma maurostigma sp. nov., is described on the basis of 24 specimens collected from the deep-sea trawl by-catch, Kalamukku Fishing Harbour, off Kerala, Arabian Sea. The new species differs from all other congeners in having the following combination of characters: dark mark or spot on the posterodorsal margin of the eyes; dorsal surface of head with two faint darkish bands across the anterior and posterior margin of the eye; origin of the dorsal fin before the pectoral-fin base; short vomerine teeth patch, ST pores 3, 1 median pore and 1 lateral pore on each side just behind the median pore; preanal vertebrae 47-51; precaudal vertebrae 54-57; total vertebrae 136-142; total pores 129-134. The phylogenetic analysis reveals that the new species is closely related to Ariosoma melanospilos and Ariosoma anale, with divergences of 13.8% and 14.9%, respectively., (© 2022 Fisheries Society of the British Isles.)

This study is based on integrative taxonomy and reports a new fish species Dussumieria modakandai sp. nov. from India. The new species differs from three valid species within the genus by a combination of characters such as longer maxilla (9.1%-9.9% standard length vs. 8.7% in Dussumieria elopsoides, 6.3%-8.5% in Dussumieria acuta) and one or two rows of small conical teeth on palatine (vs. several rows in D. elopsoides and Dussumieria albulina). It also differs by the absence of longitudinal striae on the posterior side of body scales (vs. presence in D. acuta and D. albulina) and the absence of parasphenoid teeth (vs. presence in D. acuta). The maxilla length of D. modakandai sp. nov. is greater than snout length, which distinguishes it from other congeners. The multivariate analysis of morphometric characters using PCA differentiated the new species from D. elopsoides and D. acuta samples collected in this study. The molecular analysis, based on cytochrome c oxidase I, distinguished the new species from D. acuta, D. albulina and D. elopsoides with a high genetic distance of 13.73%, 12.22% and 12.74%, respectively. The maximum-likelihood phylogenetic tree and automatic barcode gap discovery analysis showed the existence of six putative species in Dussumieria. Even the exhaustive sub-clade formation within species and high intra-species genetic distance in D. acuta (1.59) and D. modakandai (1.95) indicate the possibility of a few more cryptic species. This warrants comprehensive sample collection across the distribution range and integrative taxonomic study of the genus Dussumieria., (© 2021 Fisheries Society of the British Isles.)

Motile Aeromonas septicaemia (MAS), caused by Aeromonas hydrophila , is one of the most significant bacterial disease responsible for mortality in Indian catfish, Clarias magur , a potential aquaculture species in the Indian subcontinent. In fish, innate immunity elicited by pathogen recognition receptors (PRRs) plays an important role in providing protection against bacterial infection. Information on PRRs including Toll-like receptors ( tlrs ) and their response to bacterial pathogens remains unexplored in magur. Toll-like receptor 2 ( tlr2 ), a phylogenetically conserved germ-line encoded PRR recognizes specific microbial structure and trigger MyD88-dependent signaling pathway to induce release of various cytokines responsible for innate immune response. In the present study, tlr2 gene of magur was characterized and downstream signaling was studied following challenge with A. hydrophila . The full-length cDNA of magur tlr2 ( mtlr2 ) comprised of 3,066 bp with a single open reading frame of 2,373 bp encoding 790 amino acids having a theoretical pI value of 6.11 and molecular weight of 90 kDa. Structurally, it comprised of signal peptide (1-42aa), one leucine-rich repeat region (LRR) at N-terminal (LRR1-NT: 50-73 aa) and C-terminal (LRR-CT: 588-608 aa), twenty LRRs in between, one trans-membrane (Tm) domain (609-631aa) followed by cytoplasmic TIR domain (670-783aa). Phylogenetically, mtlr2 is closely related to pangasius and channel catfish. Highest basal expression of mtlr2 , myd88 and il-1β in spleen, nf-kb in anterior kidney was observed. Lowest basal expression of mtlr2 in skin and myd 88, nf - kb and il-1β in muscle was detected. Significant up-regulation of mtlr2 and downstream expression occurred at 3, 8, 24 h post infection to A. hydrophila in important immune organs such as liver, spleen, intestine and kidney. These findings highlight the vital role of tlr2 in eliciting innate immune defence against A. hydrophila infection., Competing Interests: The authors declare that they have no competing interests., (© 2021 Muduli et al.)

A new species of the genus Alpheus Fabricius, 1798, A. mannarensis sp. nov. is described and represented based on the materials collected from the shallow and rocky reefs, Gulf of Mannar (Thoothukudi waters), Southern India. This is the first report of Alpheus species from the Gulf of Mannar region. The new species is assigned to the Alpheus brevirostris group, and is distinguished from other species of this group by the combination of the following features: rostral ridge lower than orbital hood in lateral view and postrostral carina not extended to the middle of the carapace, palm of major chela with a transverse groove near the base of dactylus, the ultimate segment of the third maxilliped slender, fingers of minor chela of male slightly longer than palm, the first carpal segment of second pereiopods shorter than second segment, merus of third pereiopods slender and unarmed, dactylus of third pereiopods slender and subspatulate, and unique colour patterns of longitudinal light lines on the reddish body.

Mustura subhashi, new species, is described from the Dikal River, a north bank tributary of the Brahmaputra drainage in Arunachal Pradesh. It is distinguished from all its congeners by having a colour pattern of 14-23 dark-greyish black to dark brown irregular bars on a greyish to pale beige body; pre-dorsal bars thin, numerous, wider than interspaces, weakly contrasted, uniting dorsally at lateral one-third or midway on flank to form thicker bars, coalescing further at lateral one-fifth and continuous on dorsum with contralateral bars; bars below dorsal fin exhibiting similar condition but slightly wider than pre-dorsal bars; post-dorsal bars thicker than anterior bars, wider than interspaces, sharply contrasted, rarely coalescing on flank; and a short bar along the caudal mid-line, rarely forming a blotch. Based on re-examination of the type specimens and additional materials, Mustura dikrongensis is confirmed as a species belonging to Mustura, and M. harkishorei is not sufficiently diagnosed from 'Nemacheilus' corica., (© 2021 Fisheries Society of the British Isles.)

Silonia silondia is a commercially important fish distributed in Asian countries, which is under threat due to overexploitation. This study focuses on the morphological analysis and genetic variation of S. silondia individuals, through truss network and sequencing of two mitochondrial regions, respectively, from six wild populations of the Ganga and Mahanadi river systems in India. A total of 38 haplotypes was observed by analysing combined mitochondrial genes (cytochrome b + ATPase 6/8) in 247 individuals of S. silondia collected from six populations. Average haplotype and nucleotide diversities were 0.8508 and 0.00231, respectively. Genetic structure analysis showed the predominant cause of genetic variation to be within populations. The two clades were observed among the haplotypes and time of divergence from their most probable ancestor was estimated to be around 0.3949 mya. Analysis of combined mitochondrial genes in six populations of S. silondia resulted into three management units or genetic stocks. The truss network analysis was carried out by interconnecting 12 landmarks from digital images of specimens to identify phenotypic stocks. Sixty-five truss morphometric variables were analysed for geometric shape variation which revealed morphological divergence in River Son specimens. The present study presents molecular markers and genetic diversity data which can be critical input for conservation and management of differentiated populations and future monitoring of the genetic bottleneck. The morphological shape analysis clearly shows that variation in the insertion of adipose fin is an important parameter influencing the morphological discrimination., (© 2020 Fisheries Society of the British Isles.)

Spanish mackerel S. commerson belonging to family Scombridae, represent a group of highly commercial marine fisheries with an ever-growing demand world over. Analysing the genetic diversity of this species is of utmost importance and necessary for conservation purposes. Microsatellites are molecular tools with advantages that are ideal for population analyses. This study provides the first multiplex panel set of species-specific microsatellite loci for S. commerson that can be applied when assessing both intra- and inter population genetic variation. Microsatellite marker panels were developed in S. commerson, using Third Generation Sequencing technology in PacBio RSII, based on Single-Molecule Real-Time (SMRT). Thirty- two microsatellite loci were isolated and characterized for S. commerson, by genotyping 20 individuals each obtained from the Kochi and Veraval in the Arabian sea and Chennai along Bay of Bengal coast (n = 3). The number of alleles per locus in S. commerson varied from 4 to 17, while the mean observed and expected heterozygosities ranged from 0.656 to 0.753. The Polymorphic Information Content (PIC) were highly informative, 85% loci with PIC value 0 > 0.75. This suite of markers provides the first species specific nuclear multiplex microsatellite marker panels (32 loci) for S. commerson and thus allows assessment of different populations structures of the species across its distribution range, with more specificity. These newly developed loci have also been validated for cross transferability in another scomberid fish Scomberomorus guttatus.

Genetic diversity and population structure in Indian featherback fish, Chitala chitala (Hamilton, 1822) was investigated by combined analyses of two full mitochondrial genes, ATPase 6/8 and Cytochrome b. A total of 403 individuals, collected from 14 rivers yielded 61 haplotypes. Hierarchical partitioning analysis identified 19.01% variance 'among' and 80.99% variance 'within groups and populations'. The mean coefficient of genetic differentiation (F ST ) was observed to be significant 0.26 (p < 0.05). Mantel tests rejected the hypothesis that genetic and geographic distances were correlated. The patterns of genetic differentiation, AMOVA and principal coordinate analyses indicated that natural populations were sub-structured and comprised of four genetic stocks of C. chitala in Indian rivers. The results also supported the higher resolution potential of concatenated gene sequences. The knowledge of genetic variation and divergence, from this study, can be utilized for its scientific conservation and management in the wild.

Induced spawning is more inefficient in Clarias magur than in other fish species such as cyprinids and salmonids. Ovulation can be induced in the female C. magur by using pituitary extract or synthetic hormones. However, milt from the male C. magur cannot be obtained by hand stripping because the volume of seminal fluid in the testes is extremely low. Notably, similar problems are observed in other male catfishes such as C. gariepinus and C. lazera . Because milt from the males cannot be obtained for use in artificial fertilization of eggs, males are invariably sacrificed, and the testicular tissue is excised and macerated to obtain spermatozoa.•We developed an alternative approach that allowed harvesting of C. magur spermatozoa through surgery for artificial fertilization without sacrificing male fish.•The surgically obtained spermatozoa were used to inseminate C. magur eggs; the cross resulted in healthy progeny with a fertilization rate of 80%-98% and hatching of up to 85% of fertilized embryos; similar to those obtained using the conventional sacrificial approach (hatching percentage range of 45%-85%) [1].•This indicated the viability of partial surgical harvest of testicular tissue in seed production in C. magur for aquaculture without sacrificing male fish., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2020 The Authors. Published by Elsevier B.V.)

The present study reports the new records of two species of the hippolytid shrimp genus Lysmata Risso, 1816 in the water off Lakshadweep Islands, India from the Arabian Sea, viz. Lysmata hochi Baeza Anker, 2008 and Lysmata amboinensis (De Man, 1888) with more taxonomic information. Moreover, L. hochi is the first distributional report from the Indian Ocean. It is morphologically similar to L. kuekenthali and differences are discussed. Colour pattern and morphological trait of L. amboinensis are very close to L. grabhami which also differs in the presence of anti-penultimate segment of 3rd maxilliped more than 2.0 times as long as penultimate segment and stylocerite does not reaching the distal end of the cornea. These specimens were obtained at a depth of 0.5-2 m from the intertidal region of Agatti Island. Additionally, we estimated pairwise genetic distances for these two species and congeneric species using cytochrome oxidase subunit I gene sequences where interspecific distances ranged from 11-25.8 %.

We describe a new cell line, Clarias dussumieri fin (ClDuF), from the caudal fin of C. dussumieri using the explant technique followed by cryopreservation. The cryopreserved CiDuF cells were validated for quality and other characteristics. They showed typical epithelial morphology in vitro and epithelial cells outgrew their fibroblast cells after the fifth passage. ClDuF cells had a characteristic sigmoid curve with population doubling in 24 h. Immunotyping of the ClDuF cells against cytokeratin suggested the epithelial lineage. Chromosome analysis showed normal diploid (2n = 50) numbers and the cells did not contain any contamination, including Mycoplasma and other microbes. Partial sequencing of fragments of mitochondrial 16s rRNA and COI genes of ClDuF confirmed that the cell line was initiated from C. dussumieri. Cells at the 10th and 25th passages had more than 80% and 70% viability in the culture, respectively, after 6 months of storage at LN 2 . These ClDuF cells were morphologically identical to the cells before freezing and the genetic resource of C. dussumieri was preserved. The species-specific cells can serve as a valuable source for virus isolation, conservation and cloning of somatic cells., (© 2020 The Fisheries Society of the British Isles.)

The recent collection of Palaemonid shrimps from Agatti Island, Lakshadweep, Arabian Sea, have provided further additions to the Indian marine fauna. In the manuscript, a new species, Periclimenella agattii sp. nov. is described and illustrated. The new species is morphologically most similar to P. spinifera among other congeners, but it strongly differs from that species by having upper the antennular flagellum with 14-16 segments, short free ramus with 12-13 segments, lower antennal flagellum thin and bearing 35-37 segments; 4 minute lateral spines on basal segment of 3rd maxilliped; male palm:carpus ratio of second pereopod higher than in female, propodus of 3rd pereopod with 7-8 ventral spines and hepatic spine with groove. Genetic analysis using the mitochondrial COI and 16S rRNA genes sequences proved that, the new species is significantly distinct from the closed related species.

Germ cell (GC) transplantation (GCT) is a proven powerful reproductive technique to enhance the production efficiency of domesticated animals and aid to the recovery of endangered germ lines. In mammals, several methods have been adopted for the eradication of GCs such as treatment with cytotoxic drugs, irradiation, cold ischaemia and hyperthermic treatment. Some of these methods have also been tried in fishes, and conditions for sterilization of gonads have been established. Here, we report the production of GC-depleted male striped catfish Pangasianodon hypophthalmus in 12 weeks by the combination of heat and chemical treatments. The cytotoxic drug busulphan (40 mg/kg) was intraperitoneally injected into the animals at 2-week intervals (six doses in total) and maintained in water at 38°C between weeks 1 and 12. The effectiveness of the treatment was assessed using gonadal index and histology. At the end of 12 weeks, very severe gonadal degeneration was observed in fish treated with the heat-chemical combination, and 100% of sampled fish (n = 5) were found devoid of endogenous GCs. On contrary, high temperature alone caused minor gonadal degeneration. Results obtained in this study suggest that endogenous GCs of large-bodied fish such as P. hypophthalmus can also be sterilized by heat and chemical treatments within a considerably short period., (© 2019 Blackwell Verlag GmbH.)

Successful selective breeding programmes have been under way in aquacultural species for many decades. Gains in growth rate as high as 900% have been reported. Programmes selecting for resistance and/or tolerance of specific pathogens have had similar success. However, no more than 10-20% of global aquaculture production is sourced from well-documented breeding programmes. Direct selection for resistance and/or tolerance in biosecure breeding programmes is difficult when classical breeding methods are used. Genomic selection is widely expected to become the most effective mode of selection against pathogens in fish and shellfish. In this paper, the authors explore the possible negative effects of genetic improvement programmes, especially those that stem from interactions between genetics and other components of the aquaculture production system, particularly disease. The main focus is the interaction between selective breeding and biosecurity. They suggest that a self-amplifying feedback loop can be created when biosecurity regulation causes a progressive reduction in genetic diversity and an increase in inbreeding, especially in smallholder hatcheries and farms in developing countries. The resulting inbreeding depression causes increased susceptibility to disease, which in turn increases the frequency and severity of epizootics. Greater losses due to disease again increase regulatory pressures and the cycle begins once more. This 'biosecurity-agro-economic-genetic' feedback loop is analogous to an 'extinction vortex' in wild populations. The authors believe that the loop can be broken by biosecure, aquacultural, genetic exchange networks, modelled on existing breed associations for terrestrial domestic animals. Such networks would constitute a global aquacultural gene pool, with enhanced environmental resilience, long-term capacity for adaptation and minimal inbreeding depression. However, such networks will also require innovative new pathogen management procedures, documentation and regulations to facilitate the exchange of broodstock and seed while still maintaining effective biosecurity.

The present study reports the new record of Thor hainanensis Xu Li, 2014, on the basis of material from Agatti Islands in the Lakshadweep, India. This species was recently described from Hainan Island, China. Relationship of this species to two closely related species (T. paschalis and T. amboinensis) is discussed in this manuscript. Similarly, the present study also reports the rediscovery of other species, Lysmata ternatensis De Man, 1902 from the Lakshadweep waters with detailed taxonomic description. The present specimens were found to occur in the intertidal region in small crevices and rocks at a depth of 0.5-2.0 m. Genetic analysis using the mitochondrial COI sequences for both the species reveals close agreement for the morphological identification and showed the significant variation from the closely related species.

In present study, single molecule-real time sequencing technology was used to obtain a validated set of microsatellite markers for application in population genetics of the primitive fish, Chitala chitala. Assembly of circular consensus sequencing reads resulted into 1164 sequences which contained 2005 repetitive motifs. A total of 100 sequences were used for primer designing and amplification yielded a set of 28 validated polymorphic markers. These loci were used to genotype n = 72 samples from three distant riverine populations of India, namely Son, Satluj and Brahmaputra, for determining intraspecific genetic variation. The microsatellite loci exhibited high level of polymorphism with PIC values ranging from 0.281 to 0.901. The genetic parameters revealed that mean heterozygosity ranged from 0.6802 to 0.6826 and the populations were found to be genetically diverse (F st 0.03-0.06). This indicated the potential application of these microsatellite marker set that can used for stock characterization of C. chitala, in the wild. These newly developed loci were assayed for cross transferability in another notopterid fish, Notopterus notopterus.

Objective: To evaluate and correlate vaspin levels and genotype frequency in gestational diabetes mellitus., Methods: The case-control study was conducted at Aga Khan University, Karachi, from November 2015 to December 2016, and comprised pregnant women in their second trimester with gestational diabetes mellitus. Healthy pregnant women with similar characteristics were enrolled as the control group. Tetra arms amplification system for vaspin gene was performed. SPSS 21 was used for data analysis., Results: Of the 112 pregnant women, 67(60%) were normo-glycaemic and 45(40%) had gestational diabetes. Those with gestational diabetes had a higher body mass index (p=0.047) and fasting blood glucose levels (p<0.01). Serum vaspin concentrations were significantly lower in the healthy group compared to the diabetics (p=0.041). Genotype and allele frequencies followed Hardy Weinberg's Equilibrium but no significant differences were observed in genotype distribution between the groups (p>0.05).., Conclusions: Higher serum vaspin levels were seen in gestational diabetic females, but genotype and allele frequencies showed no association of vaspin with gestational diabetes mellitus.

Taxonomic ambiguity exists in genus Systomus and recently many new species were described under this genus. Systomus sarana subnasutus is considered a valid subspecies of S. sarana sarana although revisions have been done by some researchers. We employed a combination of morpho-meristics and molecular tools ( Cytochrome c oxidase I, 16S and Cytochrome b genes of mitochondrial genome) to resolve the two species. Three morpho-meristic characters, head length/maxillary barbel length (HL/MxBL), Lateral Line Scales (LLSs) as well as two truss-based characters, had discernible variation between the two taxa. The sequence analysis (2353 nucleotides) depicted a separate clad of S. sarana subnasutus with high bootstrap support. The findings from combined use of morphology, meristics and mitogenes were concordant. The corroborative results suggest the possibility of two different species. The results suggest to adopt suitable management measures, accordingly., Competing Interests: The authors report no conflicts of interest. The authors alone are responsible for the content and writing of this article., (© 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.)

Four species of the genus Osteobrama collected from five different sampling sites of Chindwin and Barak river basin of North-East India, namely O. belangeri, O. cotio, O. cunma and O. feae, were characterized. Meristic study showed differences in anal fin rays count and lateral line scales. Morphometric analysis revealed significant differences among Osteobrama species. In Truss analysis, a clear pattern of differentiation was observed among the four species with discriminant function analysis assigning 100% correctly to the particular species. In molecular analysis, four Osteobrama species collected were barcoded with COI and 16S rRNA sequences and phylogenetically these four species formed two distinct clusters, O. belangeri form one separate cluster, from the other three species i.e. O. cotio, O. cunma and O. feae. High-resolution clusters generated (NJ trees) aided the groupings of species corresponding to their genera and families which are in confirmation to the values generated by COI Automatic Barcode Gap Discovery bioinformatics platform.

Systomus sarana sarana , commonly known as olive barb, is an important food and ornamental fish species with wide distribution in South Asia. Here, the complete mitogenome was sequenced on HiSeq 2500. With 16,590 nucleotides, the base composition was 32.9% (A), 26% (C), 15.4% (G) and 25.7% (T), comparable with other carps. The clustering pattern depicted the monophyly of S. sarana sarana with sister cyprinids., Competing Interests: The authors declare that they have no conflict of interest., (© 2017 ICAR-NBFGR, India. Published by Informa UK Limited, trading as Taylor & Francis Group.)

Pengba fish, Osteobrama belangeri is a freshwater inhabitant, highly endemic, threatened and economically important minor carp for its food value. In the present investigation, population structure of O. belangeri was examined using mitochondrial ATPase 6/8 gene from geographically distinct locations along the Indo-Burma biodiversity hotspot. A total of 80 individuals were collected belonging to natural and farm populations. The hierarchical analysis of molecular variance and conventional Fst values (0.825 in ATPase 6/8 , p  < .05) indicated significant genetic structure among populations. The result showed that ATPase 6/8 genes are potential marker in determining the genetic divergence between natural and farm populations of O. belangeri from North-East India., Competing Interests: The authors report no conflict of interest. The authors alone are responsible for the content and writing of the paper., (© 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.)

Macrobrachium rosenbergii, giant freshwater prawn, is one of the most commercially important crustaceans. In the present study, primers for ATPase 6/8 region of mt-DNA were designed and successfully amplified (827 bp) in the species. The nucleotide variation in ATPase 6/8 gene revealed the population structuring in natural populations of M. rosenbergii in Indian waters. A total of 35 haplotypes were observed in 93 individuals collected from different locations. Low nucleotide diversity and high haplotype diversity were noticed for the ATPase 6/8 gene. Significant pairwise F ST and, haplotype network indicated occurrence of distinct populations. Observed mismatch distribution and Tajima's D test suggested demographical stability of giant freshwater prawn. The genetic stock structure revealed in this study will be helpful for conservation and management of stocks of M. rosenbergii in Indian waters.

Complete mitogenome sequence for Anguilla bengalensis bengalensis (family Anguillidae) was generated through third-generation sequencing platform. The 16 714 bp mitgenome sequence contained 13 protein-coding genes, 22 transfer RNAs, 2 ribosomal RNAs, and a non-coding (control) region. The gene order was identical to that observed in most of the other vertebrates. The comparison of complete mitogenome sequence of Indian mottled eel generated during this study with two other subspecies did not agree with the taxonomic status of the three subspecies and considered as one species.

In higher eukaryotes, minor rDNA family codes for 5S rRNA that is arranged in tandem arrays and comprises of a highly conserved 120 bp long coding sequence with a variable non-transcribed spacer (NTS). Initially the 5S rDNA repeats are considered to be evolved by the process of concerted evolution. But some recent reports, including teleost fishes suggested that evolution of 5S rDNA repeat does not fit into the concerted evolution model and evolution of 5S rDNA family may be explained by a birth-and-death evolution model. In order to study the mode of evolution of 5S rDNA repeats in Perciformes fish species, nucleotide sequence and molecular organization of five species of genus Channa were analyzed in the present study. Molecular analyses revealed several variants of 5S rDNA repeats (four types of NTS) and networks created by a neighbor net algorithm for each type of sequences (I, II, III and IV) did not show a clear clustering in species specific manner. The stable secondary structure is predicted and upstream and downstream conserved regulatory elements were characterized. Sequence analyses also shown the presence of two putative pseudogenes in Channa marulius. Present study supported that 5S rDNA repeats in genus Channa were evolved under the process of birth-and-death.

The Indian catfish, Clarias magur (previous name C. batrachus) is an air breathing fish, inhabitant of aquatic bodies characterized by low dissolved oxygen levels. It is exposed to hypoxic conditions in its natural habitat. Thus, it can be useful model to study the mechanism of hypoxia stress tolerance. In C. magur, molecular processes facilitating its adaptation to hypoxia stress remain largely unexplored, in part due to unavailability of genomic resources. The suppression subtractive hybridization technique (SSH) was employed to compare the differential expression of transcripts under experimental hypoxic conditions, to that of normoxic conditions. Twelve subtracted cDNA libraries (six each forward and reverse) were constructed from brain, heart, liver, muscle, spleen and head kidney tissues. A total of 2020 clones were screened and sequenced, resulting into 1805 high quality expressed sequence tags (ESTs). Annotation of these differentially expressed ESTs resulted into the identification of genes involved in vast majority of pathways/processes affecting metabolism, cellular processes, signal transduction and/or immune functions. Additionally, 18 potential novel genes expressed in hypoxia stress exposed fish were also identified. The study had catalogued the differentially expressed genes from hypoxia stress induced C. magur, where most of them are reported for the first time in a hypoxia-tolerant fish species. The results not only provided insights for the hypoxia stress altered cellular functions in C. magur, but also generated a valuable functional genomics resource to assist targeted studies on functional genomics and future genome projects., (Copyright © 2016 Elsevier Ltd. All rights reserved.)

DNA barcoding is a promising technique for species identification using a short mitochondrial DNA sequence of cytochrome c oxidase I (COI) gene. In the present study, DNA barcodes were generated from 72 species of freshwater fish covering the Orders Cypriniformes, Siluriformes, Perciformes, Synbranchiformes, and Osteoglossiformes representing 50 genera and 19 families. All the samples were collected from diverse sites except the species endemic to a particular location. Species were represented by multiple specimens in the great majority of the barcoded species. A total of 284 COI sequences were generated. After amplification and sequencing of 700 base pair fragment of COI, primers were trimmed which invariably generated a 655 base pair barcode sequence. The average Kimura two-parameter (K2P) distances within-species, genera, families, and orders were 0.40%, 9.60%, 13.10%, and 17.16%, respectively. DNA barcode discriminated congeneric species without any confusion. The study strongly validated the efficiency of COI as an ideal marker for DNA barcoding of Indian freshwater fishes.