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2. Supplementary material 1 from: Skaraki K, Pavloudi C, Dailianis T, Lagnel J, Pantazidou A, Magoulas A, Kotoulas G (2024) Microbial diversity in four Mediterranean irciniid sponges. Biodiversity Data Journal 12: e114809. https://doi.org/10.3897/BDJ.12.e114809

4. Supplementary material 2 from: Skaraki K, Pavloudi C, Dailianis T, Lagnel J, Pantazidou A, Magoulas A, Kotoulas G (2024) Microbial diversity in four Mediterranean irciniid sponges. Biodiversity Data Journal 12: e114809. https://doi.org/10.3897/BDJ.12.e114809

5. Figure 2 from: Skaraki K, Pavloudi C, Dailianis T, Lagnel J, Pantazidou A, Magoulas A, Kotoulas G (2024) Microbial diversity in four Mediterranean irciniid sponges. Biodiversity Data Journal 12: e114809. https://doi.org/10.3897/BDJ.12.e114809

6. Figure 1 from: Skaraki K, Pavloudi C, Dailianis T, Lagnel J, Pantazidou A, Magoulas A, Kotoulas G (2024) Microbial diversity in four Mediterranean irciniid sponges. Biodiversity Data Journal 12: e114809. https://doi.org/10.3897/BDJ.12.e114809

7. Nanopore adaptive sampling to identify the NLR-gene family in melon (Cucumis melo L.)

11. Crop domestication as a step toward reproductive isolation

12. Crop domestication as a step toward reproductive isolation

16. From the laboratory to the wild: salinity-based genetic differentiation of the European sea bass (Dicentrarchus labrax) using gene-associated and gene-independent microsatellite markers

18. Change of paradigm for breeding disease resistant cultivars robust to varying environments: estimators of the robustness of plant immunity and promising genes for the future

21. Gilthead sea bream ( Sparus auratus) and European sea bass ( Dicentrarchus labrax) expressed sequence tags: Characterization, tissue-specific expression and gene markers

22. SnakeCube: containerized and automated next-generation sequencing (NGS) pipelines for genome analyses in HPC environments

23. 0s and 1s in marine molecular research: a regional HPC perspective

24. Small deletion in a photosynthesis-related gene is involved in anthocyanin accumulation in the mesocarp of bf blood-flesh peaches

25. Research of candidate genes in peach for resistance to root-knot nematodes and resistance to aphids Myzus persicae

26. Development of a Snakemake 'framework/templates' to study the whole-genome transcriptional profiling from a blood-flesh trait (bf) and non blood-flesh trait (non-bf) cultivars in Prunus persica

29. Gearing Up for Warmer Times: Transcriptomic Response of Spongia officinalis to Elevated Temperatures Reveals Recruited Mechanisms and Potential for Resilience

30. Tracking paternal genes with DALP markers in a pseudoarrhenotokous reproductive system: biparental transmission but haplodiploid-like inheritance in the mite Neoseiulus californicus

32. AllMine, a flexible pipeline for allele mining

34. A high-density genotyping strategy based on gene capture in pepper: perspectives for genome wide association study and genetic mapping

38. Contribution of Oxford NanoPore technology for the de novo genome assembly of nonmodel species: the case of the Asian ladybird Harmonia axyridis

39. The genomic basis of colour pattern polymorphism in the harlequin ladybird

42. The Genomic Basis of Color Pattern Polymorphism in the Harlequin Ladybird

43. Biocluster: an NGS-dedicated HPC cluster in IMBBC, HCMR Upcoming Upgrade Usage/Partners Training

44. Additional file 6: Figure S3. of Transcription analysis of neonicotinoid resistance in Mediterranean (MED) populations of B. tabaci reveal novel cytochrome P450s, but no nAChR mutations associated with the phenotype

45. Additional file 13: Figure S6. of Transcription analysis of neonicotinoid resistance in Mediterranean (MED) populations of B. tabaci reveal novel cytochrome P450s, but no nAChR mutations associated with the phenotype

47. The “MetaCopepod” project: Designing an integrated DNA metabarcoding and image analysis approach to study and monitor the diversity of zooplanktonic copepods and cladocerans in the Mediterranean Sea

48. New tools to optmise the analysis of a large RNA-Seq dataset from non model species: development of a hybrid assembly strategy and assessment of library complexity from raw sequencing output

49. Exploring a Nonmodel Teleost Genome Through RAD Sequencing—Linkage Mapping in Common Pandora, Pagellus erythrinus and Comparative Genomic Analysis

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