1. The fast committor machine: Interpretable prediction with kernels.
- Author
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Aristoff, David, Johnson, Mats, Simpson, Gideon, and Webber, Robert J.
- Subjects
- *
STOCHASTIC systems , *KERNEL functions , *LINEAR algebra , *ALANINE , *PROBABILITY theory - Abstract
In the study of stochastic systems, the committor function describes the probability that a system starting from an initial configuration x will reach a set B before a set A. This paper introduces an efficient and interpretable algorithm for approximating the committor, called the "fast committor machine" (FCM). The FCM uses simulated trajectory data to build a kernel-based model of the committor. The kernel function is constructed to emphasize low-dimensional subspaces that optimally describe the A to B transitions. The coefficients in the kernel model are determined using randomized linear algebra, leading to a runtime that scales linearly with the number of data points. In numerical experiments involving a triple-well potential and alanine dipeptide, the FCM yields higher accuracy and trains more quickly than a neural network with the same number of parameters. The FCM is also more interpretable than the neural net. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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