42 results on '"LIFE-CYCLE STAGES"'
Search Results
2. Single‐base methylome profiling of the giant kelp Saccharina japonica reveals significant differences in DNA methylation to microalgae and plants
- Author
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Fan, Xiao, Han, Wentao, Teng, Linhong, Jiang, Peng, Zhang, Xiaowen, Xu, Dong, Li, Chang, Pellegrini, Matteo, Wu, Chunhui, Wang, Yitao, Kaczurowski, Michelle Joyce Slade, Lin, Xin, Tirichine, Leila, Mock, Thomas, and Ye, Naihao
- Subjects
Plant Biology ,Biological Sciences ,Bioinformatics and Computational Biology ,Genetics ,Human Genome ,Chromosomes ,Plant ,Cytosine ,DNA Methylation ,Evolution ,Molecular ,Gene Expression Regulation ,Plant ,Genome ,Plant ,Heterozygote ,Kelp ,Methyltransferases ,Microalgae ,Oxidoreductases ,O-Demethylating ,Plants ,Promoter Regions ,Genetic ,Transcriptome ,brown algae ,BS-PCR ,DNA methylation ,DNMT2 ,gene expression ,life-cycle stages ,MeDIP-seq ,WGBS-seq ,Agricultural and Veterinary Sciences ,Plant Biology & Botany ,Plant biology ,Climate change impacts and adaptation ,Ecological applications - Abstract
Brown algae have convergently evolved plant-like body plans and reproductive cycles, which in plants are controlled by differential DNA methylation. This contribution provides the first single-base methylome profiles of haploid gametophytes and diploid sporophytes of a multicellular alga. Although only c. 1.4% of cytosines in Saccharina japonica were methylated mainly at CHH sites and characterized by 5-methylcytosine (5mC), there were significant differences between life-cycle stages. DNA methyltransferase 2 (DNMT2), known to efficiently catalyze tRNA methylation, is assumed to methylate the genome of S. japonica in the structural context of tRNAs as the genome does not encode any other DNA methyltransferases. Circular and long noncoding RNA genes were the most strongly methylated regulatory elements in S. japonica. Differential expression of genes was negatively correlated with DNA methylation with the highest methylation levels measured in both haploid gametophytes. Hypomethylated and highly expressed genes in diploid sporophytes included genes involved in morphogenesis and halogen metabolism. The data herein provide evidence that cytosine methylation, although occurring at a low level, is significantly contributing to the formation of different life-cycle stages, tissue differentiation and metabolism in brown algae.
- Published
- 2020
3. COVID-19 and its potential impact on stages of tourist Destination Development.
- Author
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Butler, Richard
- Subjects
COVID-19 ,TOURIST attractions ,TOURISM ,TOURISM impact ,MARKET repositioning ,ECONOMIC impact of disease ,PANDEMICS - Abstract
Literature on the impacts of COVID 19 reveals thathow the effects of the pandemic may be experienced at destinations in different stages of their development has not been studied. This paper discusses the impact of a break in tourism visitation to destinations caused by COVID 19 and uses the Tourism Area Life Cycle model as a framework from which to argue that the scale and importance of the impacts on destinations will vary depending on the stage of the development cycle reached by any specific destination. Such impacts may range from a short term and temporary loss of tourists to a permanent departure of the destination from tourism. It is argued that the nature and degree of recovery of the tourism market at any specific destination will vary in speed and level of recovery, the degree of permanence of impacts, and the likelihood of destinations retaining their overall appeal after the pandemic has ended, depending on their stage of development. The paper concludes with a discussion of the possibility of destinations using the pandemic to reposition themselves in terms of their markets, and attempting to modify the tourism industry itself. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
4. Life-cycle seismic performance of Q690 steel columns with H-section under various bi-directional cyclic loading paths.
- Author
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Zhang, Qiang, Han, Qiang, and Wen, Jianian
- Subjects
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IRON & steel columns , *CYCLIC loads , *EARTHQUAKE resistant design , *GROUND motion , *DEGRADATION of steel , *STEEL framing , *SEISMIC response , *CORROSION fatigue - Abstract
The ageing effect in the life-cycle assessment should be considered for the high-strength steel structures constructed in corrosive environments and high-seismicity zones. Additionally, the structures can suffer multi-dimensional seismic excitations because of the spatial effect of ground motions. Therefore, this study aims to investigate the impact of different loading protocols on the mechanical properties of Q690 steel columns with H-section during the whole life-cycle. Firstly, numerical methods considering time-varying corrosion process are used to simulate the ageing steel columns. After that, the nonlinear hysteretic behaviors of the ageing steel columns under different loading protocols are investigated. The factor of resistance degradation (the degree of degradation of ultimate resistance) is employed to quantify the effect of loading protocols on ageing steel columns. Finally, the biaxial ultimate interaction curve considering the ageing effect and a practical design process are proposed. The findings demonstrate that the steel columns exhibit different mechanical properties under various loading protocols, and the coupling direction of bi-directional displacement loads influences the degree of degradation of ultimate resistance. As service time increases, the factor of resistance degradation of steel columns gradually reduces by up to 40%. The proposed biaxial ultimate interaction curve has acceptable accuracy. These findings emphasize the importance of employing the unfavorable loading protocols in conducting the seismic design of the steel columns in different life-cycle stages. • The numerical simulation method of steel columns considering the time-varying characteristics of corrosion is established. • The mechanical properties of ageing steel columns under different cyclic loading protocols are analyzed. • The biaxial ultimate interaction curves of steel columns during whole life-cycle is proposed. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
5. The Black Parlatoria Scale, Parlatoria ziziphi (Lucas, 1853) (Hemiptera: Coccomorpha: Diaspididae): a guide to field identification.
- Author
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Jendoubi, Hanen, Garcia-Mari, Ferran, Russo, Agatino, and Suma, Pompeo
- Subjects
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HEMIPTERA , *PEST control , *IDENTIFICATION , *PESTS , *SPECIES , *LEMON - Abstract
Pest control is easier and more effective when pests are correctly identified. The Black Parlatoria Scale, Parlatoria ziziphi (Lucas, 1853) (Hemiptera: Coccomorpha: Diaspididae) is an important invasive pest in citrus-growing countries. This diaspidid has historically been difficult to control, because its immature stages are difficult to identify due to confusion with similar Parlatoria species. No field descriptions of female or male developmental stages are available for P. ziziphi. We provide the first description of field characteristics of the developmental stages of P. ziziphi. Colonies were reared in the laboratory on sour orange plants and lemon fruits to illustrate the distinctive features of each instar. An illustrated field guide of all life-cycle stages of male and female P. ziziphi is provided for correct species identification and better pest management. This tool is designed to help recognize P. ziziphi in field-scouting programmes or quarantine inspections, without the need for taxonomic expertise in identifying the Parlatoria group. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
6. Do Life-Cycles Affect Financial Reporting Quality? Evidence from Emerging Market
- Author
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Gökberk Can
- Subjects
life-cycle stages ,financial reporting quality ,discretionary accruals ,Business ,HF5001-6182 ,Management. Industrial management ,HD28-70 - Abstract
This paper aims to present the effect of life cycle on financial reporting quality (FRQ). Discretionary accruals, small profit, and audit aggressiveness were used to test the FRQ from different approaches for Borsa Istanbul-listed companies between 2008 and 2017. The sample comprises 1,645 observations of 217 companies over a 9 year period. The life stages were estimated with Dickinson’s cash-flow patterns. Following Hansen, Hong and Park, introduction, growth, mature, shake-out, and decline parameters were assigned values of 0, 0.25, 0.5, 0.75, and 1, respectively. The findings for small profit and discretionary accruals are consistent with those of previous literature. Results show that both discretionary accruals and small profit decrease as the companies move forward in their life cycles, while, on the other hand, audit aggressiveness increases. A negative coefficient was observed, but it was insignificant for the other dependent variables. The findings provide insight into the effect of life-cycle stages on FRQ. Results show that the introduction and decline stages negatively affect FRQ, and in addition showed that the audit aggressiveness of Turkish companies decreases with increased listing duration.
- Published
- 2020
- Full Text
- View/download PDF
7. The impact of household life-cycle stages on subjective well-being: Considering the effect of household expenditures in Hungary.
- Author
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Neulinger, Agnes and Radó, Márta
- Subjects
COST of living ,HOUSEHOLD budgets ,SUBJECTIVE well-being (Psychology) ,HUMAN life cycle ,QUALITY of life - Abstract
The household life-cycle stage is a significant contributor to the perception of subjective well-being; however, the effect of household expenditures of life-cycles on subjective well-being has not been thoroughly explored. The life-course perspective, specifically the study of family/household life-cycles, emphasizes the understanding of subjective well-being across the entire life-span. Accordingly, in the literature subjective well-being is often studied at different life-stages considering the influence of variables such as age, cohabitation and fertility. The present study evaluates the level of subjective well-being across the various life-cycle stages using a matching method on a Hungarian national sample. This approach is appropriate for studies using observational data because the administration of a true experimental design is usually not feasible for this type of research. The main finding of the article is that controlling for the expenditure structure significantly modifies the effect of life-cycle on subjective well-being, which is varied across life-cycle stages and shown to be highly dependent on household expenditures. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
8. تأثیر تخصص حسابرس در صنعت و دورۀ تصدی حسابرس بر قابلیت مقایسۀ صورت های مالی با تأکید بر چرخۀ عمر شرکت
- Author
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شاملو, ناصر خداداده and نهندی, یونس بادآور
- Abstract
The purpose of the research is to determine the effect of auditor industry specialization and auditor tenure on comparability of financial statements by emphasis on the firm's life cycle. In this research, the comparability of financial statements was measured by De Franco (2011) model, auditor industry specialization was measured by Krishnan (2003) model and auditor tenure was measured using the numbers of continuous years offering audit services by an auditor. Target sample consists of 112 companies listed in Tehran Stock Exchange during 2009-2015. Hypotheses were examined using regression analysis. Results showed that auditor industry specialization has a positive and significant effect on comparability of financial statements in general and in the maturity stage. Also, auditor tenure has no effect on comparability of financial statements in general and in different stages of firm's life cycle. [ABSTRACT FROM AUTHOR]
- Published
- 2017
9. Mapping and Integrating Value Creation Factors with Life-cycle Stages for Sustainable Manufacturing.
- Author
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Bilge, P., Emec, S., Seliger, G., and Jawahir, I.S.
- Abstract
Instead of implementing each element individually, engineers must be aware of multiple interactions among all major value creation factors and their life-cycle stages. Interactions are analyzed by a set of factors and hierarchical levels within a production system based on empirical observations and described in analytical models. Such analyses and missing information about the current condition of the system and its parts remain limited to addressing specific aspects of interactions among factors and stages for multiple decision making. To build a case-based scope addressing the interactions among a set of factors and life-cycle stages, a comprehensive approach for mapping and integrating relevant elements of sustainable manufacturing is proposed in this paper. By applying the approach, a case study demonstrates how to integrate different levels of factors into various life-cycle stages in order to monitor their condition and provide necessary information for maintenance activities in a service provider company. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
10. Measuring the reduction limit of repeated recycling – a case study of the paper flow system.
- Author
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Chen, Pi-Cheng, Chiu, Ming-Cheng, and Ma, Hwong-wen
- Subjects
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WASTE recycling , *PAPER recycling , *WASTE management , *SUPPLY chains , *MARKOV processes , *LIFE cycle costing - Abstract
Recycling and recovery of materials from used products is one of the major avenues to reduce material throughput. Ideally, all materials are anticipated for being reused by the economy an infinite number of times. In reality, recovery of secondary materials may be difficult because of high costs, or because of degraded quality compared with virgin materials. The search for potential reduction of throughput in material cycles should be based on a knowledge of the limits to repeated cycles. To gain understanding of recycling limits, we developed a method to estimate the actual reduction potential for each throughput in a material's multi-cycle life. First, we investigated the material flow system of paper in Taiwan, and developed a supply chain network of paper flows. Systematic elaboration of the flows revealed where paper can be recycled and where paper can be lost. Second, we estimated the reduction potential with a material input–output Markov chain model, which maps the distribution and loss of materials on the supply chain processes. The model estimated the quantities and the life pathways of recycled materials across continuous life-cycles. An indicator was used to quantify the total performance of the material across repeated life-cycles. This method offers an opportunity to examine practices that approach the limit of reduction. This case study shows that the use and separation of paper waste after discarding may need to be reformed to extend the life-cycles of the material. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
11. Acidification, not carbonation, is the major regulator of carbon fluxes in the coccolithophore Emiliania huxleyi.
- Author
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Kottmeier, Dorothee M., Rokitta, Sebastian D., and Rost, Björn
- Subjects
- *
COCCOLITHUS huxleyi , *PHOTOSYNTHESIS , *OCEAN acidification , *EFFECT of carbon on plants , *EFFECT of carbon dioxide on plants , *HYDROGEN - Abstract
A combined increase in seawater [CO2] and [H+] was recently shown to induce a shift from photosynthetic HCO3− to CO2 uptake in Emiliania huxleyi. This shift occurred within minutes, whereas acclimation to ocean acidification (OA) did not affect the carbon source., To identify the driver of this shift, we exposed low- and high-light acclimated E. huxleyi to a matrix of two levels of dissolved inorganic carbon (1400, 2800 μmol kg−1) and pH (8.15, 7.85) and directly measured cellular O2, CO2 and HCO3− fluxes under these conditions., Exposure to increased [CO2] had little effect on the photosynthetic fluxes, whereas increased [H+] led to a significant decline in HCO3− uptake. Low-light acclimated cells overcompensated for the inhibition of HCO3− uptake by increasing CO2 uptake. High-light acclimated cells, relying on higher proportions of HCO3− uptake, could not increase CO2 uptake and photosynthetic O2 evolution consequently became carbon-limited., These regulations indicate that OA responses in photosynthesis are caused by [H+] rather than by [CO2]. The impaired HCO3− uptake also provides a mechanistic explanation for lowered calcification under OA. Moreover, it explains the OA-dependent decrease in photosynthesis observed in high-light grown phytoplankton. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
12. Transcriptome profiling of the dynamic life cycle of the scypohozoan jellyfish Aurelia aurita.
- Author
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Brekhman, Vera, Malik, Assaf, Haas, Brian, Sher, Noa, and Lotan, Tamar
- Subjects
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MOON jelly (Cnidaria) , *LIFE cycles (Biology) , *DEVELOPMENTAL biology , *METAMORPHOSIS , *COMMUNITY life , *RNA sequencing - Abstract
Background: The moon jellyfish Aurelia aurita is a widespread scyphozoan species that forms large seasonal blooms. Here we provide the first comprehensive view of the entire complex life of the Aurelia Red Sea strain by employing transcriptomic profiling of each stage from planula to mature medusa. Results: A de novo transcriptome was assembled from Illumina RNA-Seq data generated from six stages throughout the Aurelia life cycle. Transcript expression profiling yielded clusters of annotated transcripts with functions related to each specific life-cycle stage. Free-swimming planulae were found highly enriched for functions related to cilia and microtubules, and the drastic morphogenetic process undergone by the planula while establishing the future body of the polyp may be mediated by specifically expressed Wnt ligands. Specific transcripts related to sensory functions were found in the strobila and the ephyra, whereas extracellular matrix functions were enriched in the medusa due to high expression of transcripts such as collagen, fibrillin and laminin, presumably involved in mesoglea development. The CL390-like gene, suggested to act as a strobilation hormone, was also highly expressed in the advanced strobila of the Red Sea species, and in the medusa stage we identified betaine-homocysteine methyltransferase, an enzyme that may play an important part in maintaining equilibrium of the medusa's bell. Finally, we identified the transcription factors participating in the Aurelia life-cycle and found that 70% of these 487 identified transcription factors were expressed in a developmental-stage-specific manner. Conclusions: This study provides the first scyphozoan transcriptome covering the entire developmental trajectory of the life cycle of Aurelia. It highlights the importance of numerous stage-specific transcription factors in driving morphological and functional changes throughout this complex metamorphosis, and is expected to be a valuable resource to the community. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
13. The Black Parlatoria Scale, Parlatoria ziziphi (Lucas, 1853) (Hemiptera: Coccomorpha: Diaspididae): a guide to field identification
- Author
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Ferran Garcia-Marí, Agatino Russo, Hanen Jendoubi, and Pompeo Suma
- Subjects
Integrated pest management ,Citrus ,business.industry ,Parlatoria ziziphi ,Pest control ,Zoology ,life-cycle stages ,General Medicine ,Biology ,Diaspididae ,biology.organism_classification ,Hemiptera ,live appearance ,law.invention ,law ,Insect Science ,Quarantine ,Instar ,PEST analysis ,business ,Agronomy and Crop Science - Abstract
Pest control is easier and more effective when pests are correctly identified. The Black Parlatoria Scale, Parlatoria ziziphi (Lucas, 1853) (Hemiptera: Coccomorpha: Diaspididae) is an important invasive pest in citrus-growing countries. This diaspidid has historically been difficult to control, because its immature stages are difficult to identify due to confusion with similar Parlatoria species. No field descriptions of female or male developmental stages are available for P. ziziphi. We provide the first description of field characteristics of the developmental stages of P. ziziphi. Colonies were reared in the laboratory on sour orange plants and lemon fruits to illustrate the distinctive features of each instar. An illustrated field guide of all life-cycle stages of male and female P. ziziphi is provided for correct species identification and better pest management. This tool is designed to help recognize P. ziziphi in field-scouting programmes or quarantine inspections, without the need for taxonomic expertise in identifying the Parlatoria group.
- Published
- 2020
14. Edge effects in a three-dimensional world: height in the canopy modulates edge effects on the epiphyte Sarmienta repens (Gesneriaceae).
- Author
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Magrach, Ainhoa, Santamaría, Luis, and Larrinaga, Asier
- Subjects
FRAGMENTED landscapes -- Environmental aspects ,EDGE effects (Ecology) ,HABITATS ,EPIPHYTES ,LIFE cycles (Biology) ,GERMINATION - Abstract
In fragmented landscapes, the sharp transitions between remnant habitats and those created by human disturbances result in 'edge effects'. Changes in microhabitat characteristics (for example, the height at which epiphytic plants grow on their host trees) may, however, modulate these effects. We evaluated how distance to the edge and height on the host tree affect seed germination and adult occurrence of the austral-forest epiphyte Sarmienta repens. The negative effect of edges on germination and adult occurrence was modulated by a vertical gradient (height) with contrasting effects on seed germination and survival to adulthood. Seed germination was affected by both height and distance to the forest edge, increasing away from forest edges for plants growing on trees in mid-story (3-6 m) and canopy zones (6-12 m) but being unaffected by the distance to the edge for plants located in understory zones (<3 m above the ground). Adult occurrence, in contrast, increased with both height and distance to the edge. As a result, seeds deposited near edges germinated best at a microhabitat (understory zone) inadequate for subsequent survival. Our results stress the importance of maintaining intact forest areas, free from edge influences and hosting large trees, to preserve the rich epiphytic flora characteristic of humid forests. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
- View/download PDF
15. Dinophysis Diegensis is a life history stage of Dinophysis Caudata (Dinophyceae, Dinophysiales).
- Author
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Reguera, Beatriz, González-Gil, Sonsoles, and Delgado, Maximino
- Subjects
- *
SALAMANDERS , *PLEOMORPHIC fungi , *LIFE cycles (Biology) , *TAXONOMY , *DINOFLAGELLATES , *SEAFOOD poisoning , *SCIENTIFIC observation - Abstract
Several species of Dinophysis Ehrenb. have been observed to produce “small cells” that are different in size and shape from the vegetative cells, following a reductionary division under certain environmental conditions, as part of a polymorphic life cycle. Based on observations on fixed field samples, D. diegensis Kof. was hypothesized to be a small form of D. caudata Saville-Kent. In this study, this hypothesis was confirmed after incubations, in cell culture chambers, of groups of individually picked vegetative cells from natural populations of D. caudata. Eight to 10 d after inoculation, different life-cycle stages were observed in the wells. Illustrations of small and intermediate forms of D. caudata developed in vitro were contrasted with those observed during their proliferation in the northeast Atlantic (Galicia) and northwest Mediterranean (Catalonia) coasts of Iberia. It is proposed that Dinophysis diegensis–like specimens should be considered as a taxonomic (or heterotypic) synonym of Dinophysis caudata. A historical overview is provided (see Supplementary material) that revises the large list of taxa used to nominate different morphotypes of D. caudata, and its small and intermediate cells, since its original description by Saville-Kent in 1881. [ABSTRACT FROM AUTHOR]
- Published
- 2007
- Full Text
- View/download PDF
16. Effects of Family Life-Cycle Stages on Consumer Debts.
- Author
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Eunyong Baek and Gong-Soong Hong
- Subjects
FAMILIES ,CONSUMER credit ,CREDIT cards ,CONSUMERS ,FINANCIAL planners ,EDUCATORS - Abstract
Using the 1998 Survey of Consumer Finances (SCF), this study examined factors related to two types of consumer debt: installment debt and credit card debt. To address the limitations of the conventional life-cycle hypothesis, the study incorporated ability, willingness, and need to borrow, and prudence as well as lifecycle stages in the conceptual framework. The results of the double-hurdle model showed that life-cycle stages, willingness and ability to borrow, prudence, and the need to borrow were significant factors affecting installment debt and credit card debt. Based on the results, implications for financial counselors and educators, lenders, consumers, and policy makers are discussed. [ABSTRACT FROM AUTHOR]
- Published
- 2004
- Full Text
- View/download PDF
17. Single‐base methylome profiling of the giant kelp Saccharina japonica reveals significant differences in DNA methylation to microalgae and plants
- Author
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Chang Li, Michelle Joyce Slade Kaczurowski, Linhong Teng, Wentao Han, Naihao Ye, Dong Xu, Peng Jiang, Yitao Wang, Leila Tirichine, Xin Lin, Matteo Pellegrini, Xiao Fan, Chunhui Wu, Thomas Mock, Xiaowen Zhang, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Huazhong University of Science and Technology [Wuhan] (HUST), Department of Molecular, Cell, and Developmental Biology, University of California [Los Angeles] (UCLA), University of California-University of California, Heilongjiang Academy of Land Reclamation Sciences, Laboratoire des Sciences du Climat et de l'Environnement [Gif-sur-Yvette] (LSCE), Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ), School of Oceanography [Seattle], University of Washington [Seattle], University of California (UC)-University of California (UC), and Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)
- Subjects
0106 biological sciences ,0301 basic medicine ,Methyltransferase ,Physiology ,[SDV]Life Sciences [q-bio] ,Plant Science ,MeDIP-seq ,Saccharina japonica ,life‐cycle stages ,01 natural sciences ,chemistry.chemical_compound ,BS‐PCR ,Gene Expression Regulation, Plant ,Microalgae ,Promoter Regions, Genetic ,ComputingMilieux_MISCELLANEOUS ,Genetics ,Gametophyte ,WGBS‐seq ,Genome ,DNA methylation ,Full Paper ,biology ,Methylation ,Full Papers ,Plants ,Biological Sciences ,O-Demethylating ,Oxidoreductases ,Genome, Plant ,Oxidoreductases, O-Demethylating ,Heterozygote ,Evolution ,Plant Biology & Botany ,MeDIP‐seq ,brown algae ,Chromosomes, Plant ,Chromosomes ,Evolution, Molecular ,Promoter Regions ,03 medical and health sciences ,Cytosine ,BS-PCR ,Genetic ,Gene ,TRNA methylation ,Agricultural and Veterinary Sciences ,Research ,WGBS-seq ,Human Genome ,Molecular ,DNMT2 ,life-cycle stages ,Plant ,Methyltransferases ,biology.organism_classification ,030104 developmental biology ,Kelp ,chemistry ,Gene Expression Regulation ,gene expression ,Transcriptome ,DNA ,010606 plant biology & botany - Abstract
Brown algae have convergently evolved plant-like body plans and reproductive cycles, which in plants are controlled by differential DNA methylation. This contribution provides the first single-base methylome profiles of haploid gametophytes and diploid sporophytes of a multicellular alga. Although only c. 1.4% of cytosines in Saccharina japonica were methylated mainly at CHH sites and characterized by 5-methylcytosine (5mC), there were significant differences between life-cycle stages. DNA methyltransferase 2 (DNMT2), known to efficiently catalyze tRNA methylation, is assumed to methylate the genome of S.japonica in the structural context of tRNAs as the genome does not encode any other DNA methyltransferases. Circular and long noncoding RNA genes were the most strongly methylated regulatory elements in S.japonica. Differential expression of genes was negatively correlated with DNA methylation with the highest methylation levels measured in both haploid gametophytes. Hypomethylated and highly expressed genes in diploid sporophytes included genes involved in morphogenesis and halogen metabolism. The data herein provide evidence that cytosine methylation, although occurring at a low level, is significantly contributing to the formation of different life-cycle stages, tissue differentiation and metabolism in brown algae.
- Published
- 2019
18. Acidification, not carbonation, is the major regulator of carbon fluxes in the coccolithophore <scp>E</scp> miliania huxleyi
- Author
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Björn Rost, Sebastian D. Rokitta, and Dorothee M. Kottmeier
- Subjects
0106 biological sciences ,Light ,010504 meteorology & atmospheric sciences ,Physiology ,Coccolithophore ,Acclimatization ,Carbonates ,ocean acidification ,CO2‐concentrating mechanism ,Plant Science ,Photosynthesis ,life‐cycle stages ,01 natural sciences ,Carbon Cycle ,Carbon cycle ,calcification ,chemistry.chemical_compound ,membrane‐inlet mass spectrometry ,Botany ,Dissolved organic carbon ,14. Life underwater ,0105 earth and related environmental sciences ,Emiliania huxleyi ,photosynthesis ,Full Paper ,biology ,pH ,Research ,010604 marine biology & hydrobiology ,Haptophyta ,Ocean acidification ,Carbon Dioxide ,Hydrogen-Ion Concentration ,Full Papers ,biology.organism_classification ,Oxygen ,chemistry ,13. Climate action ,Environmental chemistry ,Carbon dioxide - Abstract
A combined increase in seawater [CO2 ] and [H(+) ] was recently shown to induce a shift from photosynthetic HCO3 (-) to CO2 uptake in Emiliania huxleyi. This shift occurred within minutes, whereas acclimation to ocean acidification (OA) did not affect the carbon source. To identify the driver of this shift, we exposed low- and high-light acclimated E. huxleyi to a matrix of two levels of dissolved inorganic carbon (1400, 2800 μmol kg(-1) ) and pH (8.15, 7.85) and directly measured cellular O2 , CO2 and HCO3 (-) fluxes under these conditions. Exposure to increased [CO2 ] had little effect on the photosynthetic fluxes, whereas increased [H(+) ] led to a significant decline in HCO3 (-) uptake. Low-light acclimated cells overcompensated for the inhibition of HCO3 (-) uptake by increasing CO2 uptake. High-light acclimated cells, relying on higher proportions of HCO3 (-) uptake, could not increase CO2 uptake and photosynthetic O2 evolution consequently became carbon-limited. These regulations indicate that OA responses in photosynthesis are caused by [H(+) ] rather than by [CO2 ]. The impaired HCO3 (-) uptake also provides a mechanistic explanation for lowered calcification under OA. Moreover, it explains the OA-dependent decrease in photosynthesis observed in high-light grown phytoplankton.
- Published
- 2016
19. Comparing plant life histories using elasticity analysis: the importance of life span and the number of life-cycle stages.
- Author
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Enright, N., Franco, M., and Silvertown, J.
- Abstract
Recent studies have used transition matrix elasticity analysis to investigate the relative role of survival (L), growth (G) and fecundity (F) in determining the estimated rate of population increase for perennial plants. The relative importance of these three variables has then been used as a framework for comparing patterns of plant life history in a triangular parameter space. Here we analyse the ways in which the number of life-cycle stages chosen to describe a species (transition matrix dimensionality) might influence the interpretation of such comparisons. Because transition matrix elements describing survival ('stasis') and growth are not independent, the number of stages used to describe a species influences their relative contribution to the population growth rate. Reduction in the number of stages increases the apparent importance of stasis relative to growth, since each becomes broader and fewer individuals make the transition to the next stage per unit time period. Analysis of a test matrix for a hypothetical tree species divided into 4-32 life-cycle stages confirms this. If the number of stages were defined in relation to species longevity so that mean residence time in each stage were approximately constant, then the elasticity of G would reflect the importance of relative growth rate to λ. An alternative, and simpler, approach to ensure comparability of results between species may be to use the same number of stages regardless of species longevity. Published studies for both herbaceous and woody species have tended to use relatively few stages to describe life cycles (herbs: n=45, $$\bar x = 6.16 \pm 4.63$$ ; woody plants: n=21, $$\bar x = 8.38 \pm 3.57$$ ) and so approximate this approach. By using the same number of stages regardless of longevities, the position of species along the G-L side of the triangular parameter space largely reflects differences in longevity. The extent of variation in elasticity for L, G and F within and between species may also be related to factors such as successional status and habitat. For example, the shade-tolerant woody species, Araucaria cunninghamii, shows greater importance for stasis (L), while the gap-phase congener species, Araucaria hunsteinii, shows higher values for G (although values are likely to vary with the stage of stand development). [ABSTRACT FROM AUTHOR]
- Published
- 1995
- Full Text
- View/download PDF
20. In or out? On the tightness of glycosomal compartmentalization of metabolites and enzymes in Trypanosoma brucei
- Subjects
ENERGY-METABOLISM ,PHOSPHOGLYCERATE KINASE ,Compartmentalization of metabolism ,Glycosomes ,GLYCOLYTIC-ENZYMES ,TRIOSEPHOSPHATE ISOMERASE ,LIFE-CYCLE STAGES ,SIMULTANEOUS PURIFICATION ,DIFFERENTIAL EXPRESSION ,Pores ,PROCYCLIC FORM ,Glycolysis ,BLOOD-STREAM-FORM ,FRUCTOSE-BISPHOSPHATE ALDOLASE - Abstract
Trypanosomatids sequester large parts of glucose metabolism inside specialised peroxisomes, called glycosomes. Many studies have shown that correct glycosomal compartmentalization of glycolytic enzymes is essential for bloodstream-form Trypanosoma brucel. The recent finding of pore-forming activities in glycosomal membrane preparations and extensions of the trypanosome glycolysis computer model with size-selective pores sparked again an old debate on the extent of (im)permeability of the glycosomal membrane and whether glycosomally located glycolytic enzymes could and should also be present with some activity in the cytosol. This review presents a critical discussion of the experimental and theoretical evidence for and against the different hypotheses. (C) 2014 Elsevier B.V. All rights reserved.
- Published
- 2014
21. In or out? On the tightness of glycosomal compartmentalization of metabolites and enzymes in Trypanosoma brucei
- Author
-
Jurgen R. Haanstra, Paul A.M. Michels, Barbara M. Bakker, Molecular Cell Physiology, and AIMMS
- Subjects
Trypanosoma brucei brucei ,Protozoan Proteins ,ENERGY-METABOLISM ,PHOSPHOGLYCERATE KINASE ,Compartmentalization of metabolism ,GLYCOLYTIC-ENZYMES ,Trypanosoma brucei ,Microbodies ,Glycosome ,SIMULTANEOUS PURIFICATION ,DIFFERENTIAL EXPRESSION ,PROCYCLIC FORM ,Animals ,Humans ,Glycolysis ,BLOOD-STREAM-FORM ,Molecular Biology ,chemistry.chemical_classification ,Phosphoglycerate kinase ,biology ,Biological Transport ,Glycosomes ,Peroxisome ,Compartmentalization (psychology) ,biology.organism_classification ,TRIOSEPHOSPHATE ISOMERASE ,Cell biology ,LIFE-CYCLE STAGES ,Pores ,Cytosol ,Trypanosomiasis, African ,Enzyme ,Biochemistry ,chemistry ,Parasitology ,FRUCTOSE-BISPHOSPHATE ALDOLASE - Abstract
Trypanosomatids sequester large parts of glucose metabolism inside specialised peroxisomes, called glycosomes. Many studies have shown that correct glycosomal compartmentalization of glycolytic enzymes is essential for bloodstream-form Trypanosoma brucel. The recent finding of pore-forming activities in glycosomal membrane preparations and extensions of the trypanosome glycolysis computer model with size-selective pores sparked again an old debate on the extent of (im)permeability of the glycosomal membrane and whether glycosomally located glycolytic enzymes could and should also be present with some activity in the cytosol. This review presents a critical discussion of the experimental and theoretical evidence for and against the different hypotheses. (C) 2014 Elsevier B.V. All rights reserved.
- Published
- 2014
22. Transcriptome-wide analysis of trypanosome mRNA decay reveals complex degradation kinetics and suggests a role for co-transcriptional degradation in determining mRNA levels
- Subjects
LIFE-CYCLE STAGES ,DIFFERENTIAL EXPRESSION ,3'-UNTRANSLATED REGION ,QUALITY-CONTROL ,POSTTRANSCRIPTIONAL CONTROL ,REGULATED EXPRESSION ,PHOSPHOGLYCERATE KINASE ,BRUCEI ,POLYPYRIMIDINE TRACT ,GENE-EXPRESSION - Abstract
African trypanosomes are an excellent system for quantitative modelling of post-transcriptional mRNA control. Transcription is constitutive and polycistronic; individual mRNAs are excised by trans splicing and polyadenylation. We here measure mRNA decay kinetics in two life cycle stages, bloodstream and procyclic forms, by transcription inhibition and RNASeq. Messenger RNAs with short half-lives tend to show initial fast degradation, followed by a slower phase; they are often stabilized by depletion of the 5-3 exoribonuclease XRNA. Many longer-lived mRNAs show initial slow degradation followed by rapid destruction: we suggest that the slow phase reflects gradual deadenylation. Developmentally regulated mRNAs often show regulated decay, and switch their decay pattern. Rates of mRNA decay are good predictors of steady state levels for short mRNAs, but mRNAs longer than 3kb show unexpectedly low abundances. Modelling shows that variations in splicing and polyadenylation rates can contribute to steady-state mRNA levels, but this is completely dependent on competition between processing and co-transcriptional mRNA precursor destruction.
- Published
- 2014
23. Transcriptome-wide analysis of trypanosome mRNA decay reveals complex degradation kinetics and suggests a role for co-transcriptional degradation in determining mRNA levels
- Author
-
Fadda, Abeer, Ryten, Mark, Droll, Dorothea, Rojas, Federico, Faerber, Valentin, Haanstra, Jurgen R., Merce, Clemetine, Bakker, Barbara M., Matthews, Keith, Clayton, Christine, Molecular Cell Physiology, AIMMS, Center for Liver, Digestive and Metabolic Diseases (CLDM), and Lifestyle Medicine (LM)
- Subjects
Trypanosoma ,POSTTRANSCRIPTIONAL CONTROL ,Gene Expression Profiling ,RNA Stability ,REGULATED EXPRESSION ,PHOSPHOGLYCERATE KINASE ,High-Throughput Nucleotide Sequencing ,BRUCEI ,Microbiology ,LIFE-CYCLE STAGES ,DIFFERENTIAL EXPRESSION ,3'-UNTRANSLATED REGION ,QUALITY-CONTROL ,Gene Expression Regulation ,POLYPYRIMIDINE TRACT ,Molecular Biology ,Research Articles ,GENE-EXPRESSION - Abstract
African trypanosomes are an excellent system for quantitative modelling of post-transcriptional mRNA control. Transcription is constitutive and polycistronic; individual mRNAs are excised by trans splicing and polyadenylation. We here measure mRNA decay kinetics in two life cycle stages, bloodstream and procyclic forms, by transcription inhibition and RNASeq. Messenger RNAs with short half-lives tend to show initial fast degradation, followed by a slower phase; they are often stabilized by depletion of the 5′-3′ exoribonuclease XRNA. Many longer-lived mRNAs show initial slow degradation followed by rapid destruction: we suggest that the slow phase reflects gradual deadenylation. Developmentally regulated mRNAs often show regulated decay, and switch their decay pattern. Rates of mRNA decay are good predictors of steady state levels for short mRNAs, but mRNAs longer than 3kb show unexpectedly low abundances. Modelling shows that variations in splicing and polyadenylation rates can contribute to steady-state mRNA levels, but this is completely dependent on competition between processing and co-transcriptional mRNA precursor destruction.
- Published
- 2014
24. UNDERSTANDING EVOLUTION OF PLUMAGES AND OTHER CYCLIC AVIAN LIFE-HISTORY PHENOMENA: ROLE FOR AN IMPROVED MOLT TERMINOLOGY.
- Author
-
Piersma, Theunis
- Subjects
- *
BIRDS , *ANIMAL life cycles , *NAMES , *BIOLOGICAL evolution , *BIOLOGY - Abstract
Birds show quite distinct changes in both external and internal appearance. An evolutionary interpretation of these cyclic life-history phenomena would benefit from a system of description aimed at mapping shared ancestries of arguably the "easiest" of traits: the molts and seasonal plumage changes. By 1959, Humphrey and Parkes had already provided the basis of such a system, but its development and application, especially with regard to the confusing first plumage cycle, by Howell et al. (2003), adds considerably to its power. I hope this leads to an upsurge of evolutionary studies of molt and plumage cycles that in turn provide the basis for analyses of other aspects of the flexible phenotype of birds. With such an increase, the study of molts and plumages could once again be at center stage of avian biology. [ABSTRACT FROM AUTHOR]
- Published
- 2004
- Full Text
- View/download PDF
25. Edge effects in a three-dimensional world: height in the canopy modulates edge effects on the epiphyte Sarmienta repens (Gesneriaceae)
- Author
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Ainhoa Magrach, Asier R. Larrinaga, Luis Santamaría, Eusko Jaurlaritza, Consejo Superior de Investigaciones Científicas (España), and Fundación BBVA
- Subjects
Canopy ,Epiphytic plant ,Ecology ,Biodiversity ,food and beverages ,Germination ,Adult occurrence ,Plant Science ,Understory ,Vertical distribution ,Biology ,biology.organism_classification ,Gesneriaceae ,Plant ecology ,Edge effect ,Agronomy ,Habitat ,Life-cycle stages ,Botany ,Epiphyte - Abstract
In fragmented landscapes, the sharp transitions between remnant habitats and those created by human disturbances result in >edge effects>. Changes in microhabitat characteristics (for example, the height at which epiphytic plants grow on their host trees) may, however, modulate these effects. We evaluated how distance to the edge and height on the host tree affect seed germination and adult occurrence of the austral-forest epiphyte Sarmienta repens. The negative effect of edges on germination and adult occurrence was modulated by a vertical gradient (height) with contrasting effects on seed germination and survival to adulthood. Seed germination was affected by both height and distance to the forest edge, increasing away from forest edges for plants growing on trees in mid-story (3-6 m) and canopy zones (6-12 m) but being unaffected by the distance to the edge for plants located in understory zones (, Funding by the Banco Bilbao Vizcaya Argentaria Foundation FBBVA (project DOSEL) and the Basque Country Government (pre-doctoral fellowship for A.M.) and the Spanish Research Council CSIC (JAEDOC post-doctoral grant to A.R.L.) made this study possible
- Published
- 2013
26. Introduction
- Author
-
Wright, Mike, Siegel, Donald S., Keasey, Kevin, Filatotchev, Igor, Wright, Mike, book editor, Siegel, Donald S., book editor, Keasey, Kevin, book editor, and Filatotchev, Igor, book editor
- Published
- 2013
- Full Text
- View/download PDF
27. Transcriptome profiling of the dynamic life cycle of the scypohozoan jellyfish Aurelia aurita
- Author
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Tamar Lotan, Brian J. Haas, Noa Sher, Vera Brekhman, and Assaf Malik
- Subjects
Jellyfish ,Scyphozoa ,Molecular Sequence Data ,Zoology ,Mesoglea ,Transcriptome ,biology.animal ,Genetics ,Animals ,Transcriptomics ,Planula ,Life Cycle Stages ,biology ,Gene Expression Profiling ,Metamorphosis, Biological ,Aurelia aurita ,biology.organism_classification ,Gene expression profiling ,Evolutionary biology ,Life-cycle stages ,Strobilation ,Biotechnology ,Research Article - Abstract
Background The moon jellyfish Aurelia aurita is a widespread scyphozoan species that forms large seasonal blooms. Here we provide the first comprehensive view of the entire complex life of the Aurelia Red Sea strain by employing transcriptomic profiling of each stage from planula to mature medusa. Results A de novo transcriptome was assembled from Illumina RNA-Seq data generated from six stages throughout the Aurelia life cycle. Transcript expression profiling yielded clusters of annotated transcripts with functions related to each specific life-cycle stage. Free-swimming planulae were found highly enriched for functions related to cilia and microtubules, and the drastic morphogenetic process undergone by the planula while establishing the future body of the polyp may be mediated by specifically expressed Wnt ligands. Specific transcripts related to sensory functions were found in the strobila and the ephyra, whereas extracellular matrix functions were enriched in the medusa due to high expression of transcripts such as collagen, fibrillin and laminin, presumably involved in mesoglea development. The CL390-like gene, suggested to act as a strobilation hormone, was also highly expressed in the advanced strobila of the Red Sea species, and in the medusa stage we identified betaine-homocysteine methyltransferase, an enzyme that may play an important part in maintaining equilibrium of the medusa’s bell. Finally, we identified the transcription factors participating in the Aurelia life-cycle and found that 70% of these 487 identified transcription factors were expressed in a developmental-stage-specific manner. Conclusions This study provides the first scyphozoan transcriptome covering the entire developmental trajectory of the life cycle of Aurelia. It highlights the importance of numerous stage-specific transcription factors in driving morphological and functional changes throughout this complex metamorphosis, and is expected to be a valuable resource to the community. Electronic supplementary material The online version of this article (doi:10.1186/s12864-015-1320-z) contains supplementary material, which is available to authorized users.
- Published
- 2015
28. Russian immigrant entrepreneurship in Finland : narratives of eight Russian immigrant entrepreneurs
- Author
-
Sandelin, Reija
- Subjects
yrittäjät ,life-cycle stages ,business aspirations ,elinkaari ,yrittäjyys ,maahanmuuttajat ,yritykset ,immigrant entrepreneurs ,venäläiset ,narratiivinen tutkimus ,liiketoiminta ,Suomi ,kulttuurierot ,yrityskulttuuri ,cultural dimensions - Published
- 2014
29. Effects of Family Life-Cycle Stages on Consumer Debts
- Author
-
Baek, Eunyoung and Hong, Gong-Soog
- Published
- 2004
- Full Text
- View/download PDF
30. Understanding evolution of plumages and other cyclic avian life-history phenomena
- Subjects
phenotypic flexibility ,FLIGHT ,phenotype ,seasonality ,BAR-TAILED GODWIT ,WAXES ,ORGAN ,life-cycle stages ,DISTANCE MIGRATING SHOREBIRD ,PHENOTYPIC FLEXIBILITY ,annual cycles ,SIZE ,HOMOLOGY ,DESIGN ,SIGNALS ,molt - Abstract
Birds show quite distinct changes in both external and internal appearance. An evolutionary interpretation of these cyclic life-history phenomena would benefit from a system of description aimed at mapping shared ancestries of arguably the "easiest" of traits: the molts and seasonal plumage changes. By 1959, Humphrey and Parkes had already provided the basis of such a system, but its development and application, especially with regard to the confusing first plumage cycle, by Howell et al. (2003), adds considerably to its power. I hope this leads to an upsurge of evolutionary studies of molt and plumage cycles that in turn provide the basis for analyses of other aspects of the flexible phenotype of birds. With such an increase, the study of molts and plumages could once again be at center stage of avian biology.
- Published
- 2004
31. Transketolase in Trypanosoma brucei
- Author
-
Vincent P. Alibu, Michael P. Barrett, Jean-Charles Portais, Frédéric Bringaud, Jane Hubert, Sabine A. Stoffel, Charles Ebikeme, M. Ernst Schweingruber, Pev Biotech AG, Partenaires INRAE, University of Glasgow, Laboratoire d'Ingénierie des Systèmes Biologiques et des Procédés (LISBP), Institut National de la Recherche Agronomique (INRA)-Institut National des Sciences Appliquées - Toulouse (INSA Toulouse), Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Centre National de la Recherche Scientifique (CNRS), Université de Bordeaux Ségalen [Bordeaux 2], Universität Bern- University of Bern [Bern], Swiss National Foundation, Wellcome Trust, Agence Nationale de la Recherche (ANR) [ANR-MIME2007], BBSRC-ANR, and Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)
- Subjects
[SDV]Life Sciences [q-bio] ,Trypanosoma brucei brucei ,Mutant ,Gene Expression ,Protein Sorting Signals ,Transketolase ,Biology ,Trypanosoma brucei ,METABOLISM ,Microbodies ,03 medical and health sciences ,chemistry.chemical_compound ,Cytosol ,[SDV.IDA]Life Sciences [q-bio]/Food engineering ,Escherichia coli ,Metabolic profiling ,BLOOD-STREAM FORMS ,[SPI.GPROC]Engineering Sciences [physics]/Chemical and Process Engineering ,OXIDATIVE STRESS ,PENTOSE-PHOSPHATE PATHWAY ,LEISHMANIA-MEXICANA ,Molecular Biology ,Gene ,Peroxisomal targeting signal ,Pentose phosphate pathway ,030304 developmental biology ,Pentosephosphates ,0303 health sciences ,THIAMIN CATALYSIS ,Gene Expression Profiling ,030302 biochemistry & molecular biology ,Wild type ,biology.organism_classification ,Molecular biology ,Recombinant Proteins ,LIFE-CYCLE STAGES ,Kinetics ,Protein Transport ,Sedoheptulose ,chemistry ,Biochemistry ,ESCHERICHIA-COLI ,Ttypanosoma brucei ,Transketolase activity ,Parasitology ,Ribosemonophosphates ,DIPHOSPHATE-DEPENDENT ENZYME ,MESSENGER-RNA - Abstract
International audience; A single copy gene, encoding a protein highly similar to transketolase from other systems, was identified in the Trypanosoma brucei genome. The gene was expressed in E. coil and the purified protein demonstrated transketolase activity with Km values of 0.2 mM and 0.8 mM respectively for xylulose 5-phosphate and ribose 5-phosphate. A peroxisomal targeting signal (PTS-1) present at the C-terminus of the protein suggested a glycosomal localisation. However, subcellular localisation experiments revealed that while the protein was present in glycosomes it was found mainly within the cytosol and thus has a dual localisation. Transketolase activity was absent from the long slender bloodstream form of the parasite and the protein was not detectable in this life cycle stage, with the RNA present only at low abundance, indicating a strong differential regulation, being present predominantly in the procyclic form. The gene was knocked out from procyclic T. brucei and transketolase activity was lost but no growth phenotype was evident in the null mutants. Metabolite profiling to compare wild type and TKT null mutants revealed substantial increases in transketolase substrate metabolites coupled to loss of sedoheptulose 7-phosphate, a principal product of the transketolase reaction. (C) 2011 Elsevier B.V. All rights reserved.
- Published
- 2011
32. Transcriptomics and proteomics in human African trypanosomiasis : current status and perspectives
- Author
-
Gérard Cuny, Gustave Simo, Anne Geiger, Jean-Benoît Peltier, Philippe Holzmuller, Pascal Grébaut, UMR 177, Institut de Recherche pour le Développement (IRD), Fac Sci, Dept Biochem, Palacky University Olomouc, Unité de Recherche Protéomique (PROTEOMIQUE), Institut National de la Recherche Agronomique (INRA), Foundation for Medical Research (FRM), European Foundation Initiative for NTDs, EFINTD, and Alexander von Humboldt Foundation
- Subjects
Proteomics ,[SDV]Life Sciences [q-bio] ,030231 tropical medicine ,Interactions ,Biophysics ,Computational biology ,Disease ,TSETSE-FLY ,Biology ,Trypanosoma brucei ,CONTROLLING SLEEPING SICKNESS ,Biochemistry ,Trypanosome ,Host-Parasite Interactions ,DIFFERENTIALLY EXPRESSED GENES ,ARBITRARILY PRIMED PCR ,03 medical and health sciences ,0302 clinical medicine ,VARIANT SURFACE GLYCOPROTEIN ,Parasitic Diseases ,medicine ,Animals ,Humans ,African trypanosomiasis ,BLOOD-STREAM FORM ,New therapeutic tools ,Transcriptomics ,030304 developmental biology ,CARD-AGGLUTINATION-TEST ,0303 health sciences ,Tsetse fly ,Gene Expression Profiling ,BRUCEI-GAMBIENSE ,Human African trypanosomiasis ,medicine.disease ,biology.organism_classification ,3. Good health ,LIFE-CYCLE STAGES ,Trypanosomiasis, African ,GLOSSINA-MORSITANS-MORSITANS ,Vector (epidemiology) ,Parasitic disease ,New diagnostic tools ,Immunology ,Molecular targets ,Identification (biology) ,Human - Abstract
International audience; Human African trypanosomiasis, or sleeping sickness, is a neglected vector-borne parasitic disease caused by protozoa of the species Trypanosoma brucei sensu lato. Within this complex species, T. b. gambiense is responsible for the chronic form of sleeping sickness in Western and Central Africa, whereas T. b. rhodesiense causes the acute form of the disease in East Africa. Presently, 1.5 million disability-adjusted life years (DALYs) per year are lost due to sleeping sickness. In addition, on the basis of the mortality, the disease is ranked ninth out of 25 human infectious and parasitic diseases in Africa. Diagnosis is complex and needs the intervention of a specialized skilled staff; treatment is difficult and expensive and has potentially life-threatening side effects. The use of transcriptomic and proteomic technologies, currently in rapid development and increasing in sensitivity and discriminating power, is already generating a large panel of promising results. The objective of these technologies is to significantly increase our knowledge of the molecular mechanisms governing the parasite establishment in its vector, the development cycle of the parasite during the parasite's intra-vector life, its interactions with the fly and the other microbial inhabitants of the gut, and finally human host-trypanosome interactions. Such fundamental investigations are expected to provide opportunities to identify key molecular events that would constitute accurate targets for further development of tools dedicated to field work for early, sensitive, and stage-discriminant diagnosis, epidemiology, new chemotherapy, and potentially vaccine development, all of which will contribute to fighting the disease. The present review highlights the contributions of the transcriptomic and proteomic analyses developed thus far in order to identify potential targets (genes or proteins) and biological pathways that may constitute a critical step in the identification of new targets for the development of new tools for diagnostic and therapeutic purposes. (C) 2011 Elsevier B.V. All rights reserved.
- Published
- 2011
33. Coccolithophorida: Species diversity in the Northern Adriatic
- Author
-
Godrijan, Jelena, Young, Jeremy, Marić, Daniela, Pfannkuchen, Martin, Travizi, Ana, Iveša, Ljiljana, and Fafanđel, Maja
- Subjects
Interdisciplinary Natural Sciences ,Marine Science ,Coccolithophorids ,species diversity ,life-cycle stages - Abstract
The coccolithophorida are calcifying, unicellular eukaryotes that form an important part of the marine phytoplankton. They belong to the algal division Haptophyta. Two life-cycle phases, haploid and diploid, alternate within Haptophyta and the transition between them is prompted by environmental triggers. Each phase is characterised by different types of coccoliths, the holococcoliths and heterococcoliths. These were so different, that each phase was first described and named as separate species. Species diversity was analysed in the coastal area of the northern Adriatic, 1 nm in front of Rovinj. Samples were taken over a one year period every ten days, thus covering the observable range of species throughout the succession time line. The primary data source used in this study was scanning electron microscopy. A total of 31 species were recorded, 4 of which were observed in both life-cycle stages (Syracosphaera pulcha (HOL Calyptrosphaera oblonga), Syracosphaera histrica (HOL Calyptrolithophora papillifera), Helicosphaera carteri (HOL Syracolithus catilliferus) and Coronosphaera mediterranea (HOL Calyptrolithina wettsteini)). The genus with the most species present was Syracosphaera, represented by 10 species. An unexpectedly wide diversity of coccolithophorida was recorded. Our results dramatically change the perception of the importance of coccolithophorida for the northern Adriatic phytoplankton.
- Published
- 2011
34. Edge effects in a three-dimensional world: Height in the canopy modulates edge effects on the epiphyte Sarmienta repens (Gesneriaceae)
- Author
-
Eusko Jaurlaritza, Consejo Superior de Investigaciones Científicas (España), Fundación BBVA, Magrach, Ainhoa, Santamaría, Luis, Larrinaga, Asier R., Eusko Jaurlaritza, Consejo Superior de Investigaciones Científicas (España), Fundación BBVA, Magrach, Ainhoa, Santamaría, Luis, and Larrinaga, Asier R.
- Abstract
In fragmented landscapes, the sharp transitions between remnant habitats and those created by human disturbances result in >edge effects>. Changes in microhabitat characteristics (for example, the height at which epiphytic plants grow on their host trees) may, however, modulate these effects. We evaluated how distance to the edge and height on the host tree affect seed germination and adult occurrence of the austral-forest epiphyte Sarmienta repens. The negative effect of edges on germination and adult occurrence was modulated by a vertical gradient (height) with contrasting effects on seed germination and survival to adulthood. Seed germination was affected by both height and distance to the forest edge, increasing away from forest edges for plants growing on trees in mid-story (3-6 m) and canopy zones (6-12 m) but being unaffected by the distance to the edge for plants located in understory zones (<3 m above the ground). Adult occurrence, in contrast, increased with both height and distance to the edge. As a result, seeds deposited near edges germinated best at a microhabitat (understory zone) inadequate for subsequent survival. Our results stress the importance of maintaining intact forest areas, free from edge influences and hosting large trees, to preserve the rich epiphytic flora characteristic of humid forests. © 2013 Springer Science+Business Media Dordrecht.
- Published
- 2013
35. New life-cycle stages of Gymnodinium catenatum (dinophyceae): laboratory and field observations
- Author
-
Yolanda Pazos, Isabel Bravo, Isabel Ramilo, Rosa Isabel Figueroa, and Ángeles Moroño
- Subjects
biology ,Ecology ,Dinoflagellate ,Galician rías ,Aquatic Science ,biology.organism_classification ,medicine.disease ,Sexual reproduction ,Encystment ,Gymnodinium catenatum ,Dinophyceae ,Algae ,Abundance (ecology) ,Life-cycle stages ,Centro Oceanográfico de Vigo ,medicine ,Dormancy ,Paralytic shellfish poisoning ,Medio Marino ,Bloom ,Ecology, Evolution, Behavior and Systematics - Abstract
11 pages, 7 figures, 2 tables, The chain-forming dinoflagellate Gymnodinium catenatum is responsible for outbreaks of paralytic shellfish poisoning (PSP); however, the relative importance of benthic-planktonic lifecycle transitions in the appearance of blooms of this species needs to be clarified. By coupling field and laboratory experiments, the present study is the first to analyze the dynamics of vegetative cells and sexual stages during a bloom of G. catenatum. In natural samples, the sexual stages of G. catenatum were associated with several different cellular behaviors and morphologies. This confirmed laboratory evidence for the reversibility of the species' sexual processes and for the ability of zygotes to either bypass or shorten the route to resting-cyst formation. Moreover chains of up to 4 viable cysts with differing morphologies occurred and these have never been reported previously for this species. At least two of the cysts had reticulated surfaces, a feature related to sexual reproduction in previous studies; this observation suggests the involvement of sexual processes in mechanisms that cannot be explained by any known life cycle route depicted for this species. Morphological variability and abundance of the sexual stages during the bloom indicated the complexity of the G. catenatum sexual cycle and the important role of sexual reproduction in the ecological succession of this species. However, the lack of a dormancy period in the sexual resting stage (evidenced by the large number of germinated cysts in sediments sampled 3 mo after the bloom) indicated that the advection of off-shore populations shoreward, rather than 'seed beds', is the main mechanism explaining G. catenatum bloom formation in the Galician rías. © Inter-Research 2008, This study was funded by the EU Project SEED (GOCE-CT-2005-003875) and the Xunta de Galicia Monitoring Program. R.I.F. was supported by a postdoctoral I3P contract from the Spanish Ministry of Education and Science
- Published
- 2008
36. New life-cycle stages of Gymnodinium catenatum (Dinophyceae): laboratory and field observations
- Author
-
Figueroa, Rosa Isabel, Bravo, Isabel, Ramilo, Isabel, Pazos, Yolanda, Moroño, Ángeles, Figueroa, Rosa Isabel, Bravo, Isabel, Ramilo, Isabel, Pazos, Yolanda, and Moroño, Ángeles
- Abstract
The chain-forming dinoflagellate Gymnodinium catenatum is responsible for outbreaks of paralytic shellfish poisoning (PSP); however, the relative importance of benthic-planktonic lifecycle transitions in the appearance of blooms of this species needs to be clarified. By coupling field and laboratory experiments, the present study is the first to analyze the dynamics of vegetative cells and sexual stages during a bloom of G. catenatum. In natural samples, the sexual stages of G. catenatum were associated with several different cellular behaviors and morphologies. This confirmed laboratory evidence for the reversibility of the species' sexual processes and for the ability of zygotes to either bypass or shorten the route to resting-cyst formation. Moreover chains of up to 4 viable cysts with differing morphologies occurred and these have never been reported previously for this species. At least two of the cysts had reticulated surfaces, a feature related to sexual reproduction in previous studies; this observation suggests the involvement of sexual processes in mechanisms that cannot be explained by any known life cycle route depicted for this species. Morphological variability and abundance of the sexual stages during the bloom indicated the complexity of the G. catenatum sexual cycle and the important role of sexual reproduction in the ecological succession of this species. However, the lack of a dormancy period in the sexual resting stage (evidenced by the large number of germinated cysts in sediments sampled 3 mo after the bloom) indicated that the advection of off-shore populations shoreward, rather than 'seed beds', is the main mechanism explaining G. catenatum bloom formation in the Galician rías. © Inter-Research 2008
- Published
- 2008
37. Dinophysis diegensis is a life history stage of Dinophysis caudata (Dinophyceae, Dinophysiales)
- Author
-
Reguera Ramírez, Beatriz, González-Gil, Sonsoles, Delgado, Maximino, Reguera Ramírez, Beatriz, González-Gil, Sonsoles, and Delgado, Maximino
- Abstract
Several species of Dinophysis Ehrenb. have been observed to produce >small cells> that are different in size and shape from the vegetative cells, following a reductionary division under certain environmental conditions, as part of a polymorphic life cycle. Based on observations on fixed field samples, D. diegensis Kof. was hypothesized to be a small form of D. caudata Saville-Kent. In this study, this hypothesis was confirmed after incubations, in cell culture chambers, of groups of individually picked vegetative cells from natural populations of D. caudata. Eight to 10 d after inoculation, different life-cycle stages were observed in the wells. Illustrations of small and intermediate forms of D. caudata developed in vitro were contrasted with those observed during their proliferation in the northeast Atlantic (Galicia) and northwest Mediterranean (Catalonia) coasts of Iberia. It is proposed that Dinophysis diegensis-like specimens should be considered as a taxonomic (or heterotypic) synonym of Dinophysis caudata. A historical overview is provided (see Supplementary material) that revises the large list of taxa used to nominate different morphotypes of D. caudata, and its small and intermediate cells, since its original description by Saville-Kent in 1881. © 2007 Phycological Society of America
- Published
- 2007
38. Transcriptome analyses reveal differential gene expression patterns between the life-cycle stages of Emiliania Huxleyi (haptophyta) and reflect specialization to different ecological niches
- Subjects
fungi ,endocytosis ,life-cycle stages ,transcriptome profiling ,microarray ,quantitative RT-PCR - Abstract
Coccolithophores, especially the abundant, cosmopolitan species Emiliania huxleyi (Lohmann) W. W. Hay et H. P. Mohler, are one of the main driving forces of the oceanic carbonate pump and contribute significantly to global carbon cycling, due to their ability to calcify. A recent study indicates that termination of diploid blooms by viral infection induces life-cycle transition, and speculation has arisen about the role of the haploid, noncalcifying stage in coccolithophore ecology. To explore gene expression patterns in both life-cycle stages, haploid and diploid cells of E. huxleyi (RCC 1217 and RCC 1216) were acclimated to limiting and saturating photon flux densities. Transcriptome analyses were performed to assess differential genomic expression related to different ploidy levels and acclimation light intensities. Analyses indicated that life-cycle stages exhibit different properties of regulating genome expression (e.g., pronounced gene activation and gene silencing in the diploid stage), proteome maintenance (e.g., increased turnover of proteins in the haploid stage), as well as metabolic processing (e.g., pronounced primary metabolism and motility in the haploid stage and calcification in the diploid stage). Furthermore, higher abundances of transcripts related to endocytotic and digestive machinery were observed in the diploid stage. A qualitative feeding experiment indicated that both life-cycle stages are capable of particle uptake (0.5 mu-m diameter) in late-stationary growth phase. Results showed that the two life-cycle stages represent functionally distinct entities that are evolutionarily shaped to thrive in the environment they typically inhabit.
- Published
- 2011
39. TRANSCRIPTOME ANALYSES REVEAL DIFFERENTIAL GENE EXPRESSION PATTERNS BETWEEN THE LIFE-CYCLE STAGES OF EMILIANIA HUXLEYI (HAPTOPHYTA) AND REFLECT SPECIALIZATION TO DIFFERENT ECOLOGICAL NICHES(1).
- Author
-
Rokitta SD, de Nooijer LJ, Trimborn S, de Vargas C, Rost B, and John U
- Abstract
Coccolithophores, especially the abundant, cosmopolitan species Emiliania huxleyi (Lohmann) W. W. Hay et H. P. Mohler, are one of the main driving forces of the oceanic carbonate pump and contribute significantly to global carbon cycling, due to their ability to calcify. A recent study indicates that termination of diploid blooms by viral infection induces life-cycle transition, and speculation has arisen about the role of the haploid, noncalcifying stage in coccolithophore ecology. To explore gene expression patterns in both life-cycle stages, haploid and diploid cells of E. huxleyi (RCC 1217 and RCC 1216) were acclimated to limiting and saturating photon flux densities. Transcriptome analyses were performed to assess differential genomic expression related to different ploidy levels and acclimation light intensities. Analyses indicated that life-cycle stages exhibit different properties of regulating genome expression (e.g., pronounced gene activation and gene silencing in the diploid stage), proteome maintenance (e.g., increased turnover of proteins in the haploid stage), as well as metabolic processing (e.g., pronounced primary metabolism and motility in the haploid stage and calcification in the diploid stage). Furthermore, higher abundances of transcripts related to endocytotic and digestive machinery were observed in the diploid stage. A qualitative feeding experiment indicated that both life-cycle stages are capable of particle uptake (0.5 μm diameter) in late-stationary growth phase. Results showed that the two life-cycle stages represent functionally distinct entities that are evolutionarily shaped to thrive in the environment they typically inhabit., (© 2011 Phycological Society of America.)
- Published
- 2011
- Full Text
- View/download PDF
40. TRANSCRIPTOME ANALYSES REVEAL DIFFERENTIAL GENE EXPRESSION PATTERNS BETWEEN THE LIFE-CYCLE STAGES OF EMILIANIA HUXLEYI (HAPTOPHYTA) AND REFLECT SPECIALIZATION TO DIFFERENT ECOLOGICAL NICHES
- Author
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Rokitta, Sebastian D., Nooijer, Lennart J., Trimborn, Scarlett, Vargas, Colomban, Rost, Bjoern, and Uwe John
- Subjects
Aardwetenschappen ,fungi ,endocytosis ,life-cycle stages ,transcriptome profiling ,microarray ,quantitative RT-PCR - Abstract
Coccolithophores, especially the abundant, cosmopolitan species Emiliania huxleyi (Lohmann) W. W. Hay et H. P. Mohler, are one of the main driving forces of the oceanic carbonate pump and contribute significantly to global carbon cycling, due to their ability to calcify. A recent study indicates that termination of diploid blooms by viral infection induces life-cycle transition, and speculation has arisen about the role of the haploid, noncalcifying stage in coccolithophore ecology. To explore gene expression patterns in both life-cycle stages, haploid and diploid cells of E. huxleyi (RCC 1217 and RCC 1216) were acclimated to limiting and saturating photon flux densities. Transcriptome analyses were performed to assess differential genomic expression related to different ploidy levels and acclimation light intensities. Analyses indicated that life-cycle stages exhibit different properties of regulating genome expression (e.g., pronounced gene activation and gene silencing in the diploid stage), proteome maintenance (e.g., increased turnover of proteins in the haploid stage), as well as metabolic processing (e.g., pronounced primary metabolism and motility in the haploid stage and calcification in the diploid stage). Furthermore, higher abundances of transcripts related to endocytotic and digestive machinery were observed in the diploid stage. A qualitative feeding experiment indicated that both life-cycle stages are capable of particle uptake (0.5 mu-m diameter) in late-stationary growth phase. Results showed that the two life-cycle stages represent functionally distinct entities that are evolutionarily shaped to thrive in the environment they typically inhabit.
41. Acidification, not carbonation, is the major regulator of carbon fluxes in the coccolithophore Emiliania huxleyi
- Published
- 2016
42. Morphological Variation between Geographically Disjunct Populations of Atlantic Salmon: The Effects of Ontogeny and Habitat Shift
- Author
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Nicieza, A. G.
- Published
- 1995
- Full Text
- View/download PDF
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