87 results on '"Lüleci G"'
Search Results
2. Frequency of Three Hemochromatosis Gene Mutations in Antalya, Turkey
- Author
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Oztürk S, Lüleci G, and Keser I
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hereditary hemochromatosis ,hemochromatosis gene (hfe) ,c282y ,s65c ,h63d ,antalya ,Genetics ,QH426-470 - Published
- 2007
- Full Text
- View/download PDF
3. Novel and rare CFTR gene mutations in Turkish patients with congenital aplasia of vas deferens
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Akin, Y., Demir, D., Görgişen, G., Lüleci, G., Alper, Ö. M., Watanabe, C. S., Sahiner, I. F., and Usta, M. F.
- Published
- 2014
- Full Text
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4. ASSOCIATION OF SEVERAL GENETIC VARIANTS WITH MYOCARDIAL INFARCTION: A PILOT STUDY IN A MEDITERRANEAN REGION: I27
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Manguoğlu, E A, Alper, ÖM, Küçük, M, lu, Pehlivanoğ S, Demir, D, Erengin3, H, Belgi, A, and Lüleci, G
- Published
- 2010
5. MUTATION ANALYSIS OF THE CFTR GENE IN PATIENTS WITH CONGENITAL ABSENCE OF UTERUS, AND VAGINA: A64
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Demir, D, Alper, ÖM, Akar, M, Şimşek, M, Özkan, Ö, Pehlivanoglu, S, and Lüleci, G
- Published
- 2010
6. Consanguineous marriages in the province of Antalya, Turkey
- Author
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Alper, Ö.M., Erengin, H., E Manguoğlu, A., Bilgen, T., Çetin, Z., Dedeoğlu, N., and Lüleci, G.
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- 2004
- Full Text
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7. Telomere-specific fluorescence in situ hybridization analysis of couples with five or more recurrent miscarriages
- Author
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Yakut, S, Berker-Karaüzüm, S, Şimşek, M, Zorlu, G, Trak, B, and Lüleci, G
- Published
- 2002
8. Cytogenetic studies among mentally retarded children attending to special classes of mebaram in antalya province
- Author
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Keser, İ., Lüleci, G., and Keskin, V.
- Subjects
Mental retardation,Chromosome abnormalities,fra (X) (q27.3),Trisomy 21,Heteromorphism ,Medicine ,Tıp - Abstract
Objective: The aim of this study was to investigate chromosomal abnormalities among mentally retarded children attending special classes at Antalya Guide and Research Center (MEBARAM).Methods: One hundred and fifty-one children having different IQ and ages attending special classes of MEBARAM were screened for chromosomal abnormalities using cytogenetic techniques.Results: The significant chromosomal abnormalities have been found as both major (3.97%) and heteromorphic (11.25%). The major chromosomal abnormalities were 46,Y, fra(X) (q27.3), 46,X, fra(X) (q27.3) with fra (3) (p14) and fra(16) (q23), 46,Y, fra(X) (p22), 46,XY, fra(8) (q22), and two cases 47.XX+21. Seventeen out of 151 children had different types of heterochromatic chromosomal abnormalities (1qh+, 10qh+, 15ph+, 16qh+, 21ph+, 22pss, Yqh+, Yqh-) and two had pericentric inversion of chromosome 9.Conclusion: We suggest that children with learning difficulties should be screened for chromosomal abnormalities. Families with incidences of a child having fra (x) (q 27.3) and trisomy 21 chromosomal abnormalities should be quided towards prenatal diagnosis with genetic counseling.
- Published
- 2016
9. RLIP76 gene variants are not associated with drug response in turkish epilepsy patients
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Manguoglu, E., Akdeniz, S., Dündar, N., Duman, Ö., Aktekin, B., Haspolat, Ş., Lüleci, G., Manguoglu, E., Akdeniz, S., Dündar, N., Duman, Ö., Aktekin, B., Haspolat, Ş., Lüleci, G., and Yeditepe Üniversitesi
- Subjects
Epilepsy ,Neuropharmacology ,Pharmacogenetics ,RLIP76 gene ,Polymorphism - Abstract
Approximately 30% of epileptic patients remain untreated, in spite of trials with maximum tolerable doses of more than one drug. The RalA binding protein 1 (RALBP1/RLIP76), a multifunctional, anti-apoptotic, multidrug transporter protein, has been proposed as being responsible for the drug resistance mechanism in epilepsy. We have investigated polymorphic differences in the coding regions and exon-intron boundaries of the RLIP76 gene, between 146 refractory and 155 non refractory epileptic patients in Turkey, using denaturing high performance liquid chromatography (HPLC) and sequencing analysis techniques. We have detected the following sequence variants: c.160-4G>A, c.187C>G, c.1562-38G>A, c.1670+107G>A, c.1670+93G>A, c.1670+96G>A, c.1670+100C>T, c.1670+130C>T, c.1670+131G>C, c.1670+140 G>C, and found no statistically significant correlation between allele frequencies and drug response status. We conclude that sequence variants of this gene are not involved in drug resistance in epilepsy. Akdeniz Üniversitesi: 2006.01.0103.010 This study was supported by the Akdeniz University Scientific Research Projects Foundation and Coordination Unit Project number: 2006.01.0103.010 (EM).
- Published
- 2011
10. Germline mutations in the BRCA1 and BRCA2 genes in Turkish breast ovarian cancer patients
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Manguoglu, A. E., Lüleci, G., Özçelik, T., Çolak, T., Schayek, H., Akaydin, M., and Friedman, E.
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endocrine system diseases ,PTT ,DGGE ,High risk for breast cancer ,skin and connective tissue diseases ,BRCA1 ,BRCA2 ,Turkish population - Abstract
In this study we genotyped Turkish breast/ovarian cancer patients for BRCA1/BRCA2 mutations: protein truncation test (PTT) for exon 11 BRCA1 of and, multiplex PCR and denaturing gradient gel electrophoresis (DGGE) for BRCA2, complemented by DNA sequencing. In addition, a modified restriction assay was used for analysis of the predominant Jewish mutations: 185delAG, 5382InsC, Tyr978X (BRCA1) and 6174delT (BRCA2). Eighty three breast/ovarian cancer patients were screened: twenty three had a positive family history of breast/ovarian cancer, ten were males with breast cancer at any age, in eighteen the disease was diagnosed under 40 years of age, one patient had ovarian cancer in addition to breast cancer and one patient had ovarian cancer. All the rest (n=30) were considered sporadic breast cancer cases. Overall, 3 pathogenic mutations (3/53‐5.7%) were detected, all in high risk individuals (3/23–13%): a novel (2990insA) and a previously described mutation (R1203X) in BRCA1, and a novel mutation (9255delT) in BRCA2. In addition, three missense mutations [two novel (T42S, N2742S) and a previously published one (S384F)] and two neutral polymorphisms (P9P, P2532P) were detected in BRCA2. Notably none of the male breast cancer patients harbored any mutation, and none of the tested individuals carried any of the Jewish mutations. Our findings suggest that there are no predominant mutations within exon 11 of the BRCA1 and in BRCA2 gene in Turkish high risk families.
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- 2003
11. Nucleotide changes in the y-globin promoter and the (AT)xNy(AT)z polymorphic sequence of bètaLCRHS-2 region associated with altered levels of HbF
- Author
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Samakoglu, S, Philipsen, Sjaak, Grosveld, Frank, Lüleci, G, Bagci, H, and Cell biology
- Published
- 1999
12. Novel and rareCFTRgene mutations in Turkish patients with congenital aplasia of vas deferens
- Author
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Akin, Y., primary, Demir, D., additional, Görgişen, G., additional, Lüleci, G., additional, Alper, Ö. M., additional, Watanabe, C. S., additional, Sahiner, I. F., additional, and Usta, M. F., additional
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- 2012
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13. The frequency and medical effects of consanguineous marriages in Antalya, Turkey
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GÜZ, K., primary, DEDEOǦLU, N., additional, and LÜLECI, G., additional
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- 2008
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14. Detection of LOH of the RB1 Gene in Bladder Cancers by PCR-RFLP
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Açikbas, I., primary, Keser, I., additional, Kiliç, S., additional, Bağci, H., additional, Karpuzoğlu, G., additional, and Lüleci, G., additional
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- 2002
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15. Sickle-β-thalassemia and splenic calcification
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Şenol, U., primary, Lüleci, E., additional, Keser, İ., additional, Güzeloglu-Kayısl&#x, Ö., additional, Toraman, A. D., additional, Lüleci, G., additional, and Canatan, D., additional
- Published
- 2001
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16. β-Thalassemia major associated with Down syndrome
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Keser, İbrahim, primary, Canatan, D, additional, Güzeloglu-Kayişli, Ö, additional, Coşan, R, additional, and Lüleci, G, additional
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- 2001
- Full Text
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17. RLIP76Gene Variants are not Associated with Drug Response in Turkish Epilepsy Patients
- Author
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Manguoglu, E, Akdeniz, S, Dündar, N, Duman, Ö, Aktekin, B, Haspolat, S, Bilge, U, Özel, D, and Lüleci, G
- Abstract
RLIP76Gene Variants are not Associated with Drug Response in Turkish Epilepsy PatientsApproximately 30% of epileptic patients remain untreated, in spite of trials with maximum tolerable doses of more than one drug. The RalA binding protein 1 (RALBP1/RLIP76), a multifunctional, anti-apoptotic, multidrug transporter protein, has been proposed as being responsible for the drug resistance mechanism in epilepsy. We have investigated polymorphic differences in the coding regions and exon-intron boundaries of the RLIP76gene, between 146 refractory and 155 non refractory epileptic patients in Turkey, using denaturing high performance liquid chromatography (HPLC) and sequencing analysis techniques. We have detected the following sequence variants: c.160-4G>A, c.187C>G, c.1562-38G>A, c.1670+107G>A, c.1670+93G>A, c.1670+96G>A, c.1670+100C>T, c.1670+130C>T, c.1670+131G>C, c.1670+140 G>C, and found no statistically significant correlation between allele frequencies and drug response status. We conclude that sequence variants of this gene are not involved in drug resistance in epilepsy.
- Published
- 2011
- Full Text
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18. Mosaic Intrachromosomal Triplication of (12)(p11.2p13) in a Patient with Pallister-Killian Syndrome
- Author
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Yakut S, Mıhcı E, Altiok Clark, Cetin Z, Keser I, Berker S, and Luleci G
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pallister-killian syndrome (pks) ,tetrasomy 12p ,intrachromosomal triplication ,Genetics ,QH426-470 - Published
- 2012
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19. Turner Syndrome with Isochromosome Xq and Familial Reciprocal Translocation t(4;16)(p15.2;p13.1)
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Cetin Z, Mendilcioglu I, Yakut S, Berker-Karauzum S, Karaman B, and Luleci G
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turner syndrome ,reciprocal translocation ,cytogenetics ,isochromosome xq ,Genetics ,QH426-470 - Published
- 2011
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20. Aplasia Ras Homologous Member I Gene and Development of Glial Tumors
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Yakut S, Tuncer M, Berker M, Goksu E, Gurer I, Ozes O, Luleci G, and Karauzum S
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cancer ,dna testing ,genetic testing ,genes ,methylation ,Genetics ,QH426-470 - Published
- 2011
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21. Lack of association between RNASEL Arg462Gln variant and the risk of breast cancer
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Sevinç, A., Yannoukakos, D., Konstantopoulou, I., Manguoglu, E., Lüleci, G., Çolak, T., Akyerli, C., Çolakoglu, G., Mesut Tez, Sayek, I., Gerassimos, V., Nasioulas, G., Papadopoulou, E., Florentin, L., Kontogianni, E., Bozkurt, B., Kocabas, N. A., Karakaya, A. E., Yulug, I. G., and Özçelik, T.
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Adult ,Ribonuclease L ,Adolescent ,Genotype ,Glutamine ,Protein variant ,Breast Neoplasms ,Major clinical study ,urologic and male genital diseases ,Arginine ,Article ,Turkey (republic) ,Amino acid sequence ,Cancer risk ,Breast cancer ,Disease association ,Endoribonucleases ,Humans ,Gene mutation ,Human tissue ,Middle aged ,Alleles ,Aged ,Priority journal ,Gene amplification ,Pleiotropy ,Aged, 80 and over ,Greece ,Amplification refractory mutation system ,DNA, Neoplasm ,RNASEL ,Risk factors ,Case-Control Studies ,Mutation ,Female ,Risk factor ,Controlled study ,Human - Abstract
Background: The RNASEL G1385A variant was recently found to be implicated in the development of prostate cancer. Considering the function of RNase L and the pleiotropic effects of mutations associated with cancer, we sought to investigate whether the RNASEL G1385A variant is a risk factor for breast cancer. Patients and Methods: A total of 453 breast cancer patients and 382 age- and sex-matched controls from Greece and Turkey were analyzed. Genotyping for the RNASEL G1385A variant was performed using an Amplification Refractory Mutation System (ARMS). Results: Statistical evaluation of the RNASEL G1385A genotype distribution among breast cancer patients and controls revealed no significant association between the presence of the risk genotype and the occurrence of breast cancer. Conclusion: Although an increasing number of studies report an association between the RNASEL G1385A variant and prostate cancer risk, this variant does not appear to be implicated in the development of breast cancer.
22. Short report. The AIDIT and IMPACT conference 2006: Outcomes and future directions
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Doherty R, Lubinski J, Manguoglu E, Luleci G, Christie M, Craven P, Bancroft E, Mitra A, Morgan S, and Eeles R
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 ,Genetics ,QH426-470 - Published
- 2007
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23. IMPACT and AIDIT: Strengthening Research Ties in Eastern Europe
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Morgan Sarah, Lubinski Jan, Manguoglu Esra, Luleci Guven, Doherty Rebecca, Christie Margaret, Craven Paul, Bancroft Elizabeth, Mitra Anita, Zieba Karolina, and Eeles Ros
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 ,Genetics ,QH426-470 - Published
- 2006
- Full Text
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24. Sickle-beta-thalassemia and splenic calcification.
- Author
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Senol, U, Lüleci, E, Keser, I, Güzeloglu-Kayisli, O, Toraman, A D, Lüleci, G, and Canatan, D
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- 2001
25. Sickle-ß-thalassemia and splenic calcification
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Şenol, U., Lüleci, E., Keser, İ., Güzeloglu-Kayıslı, Ö., Toraman, A. D., Lüleci, G., and Canatan, D.
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- 2001
- Full Text
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26. Rare structural chromosomal abnormalities in prenatal diagnosis; clinical and cytogenetic findings on 10125 prenatal cases.
- Author
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Yakut S, Çetin Z, Şİmşek M, Mendilcioğlu II, Toru HS, Berker Karaüzüm S, and Lüleci G
- Subjects
- Amniocentesis, Autopsy, Chromosome Disorders diagnostic imaging, Chromosome Disorders pathology, Comparative Genomic Hybridization, Female, Genotype, Humans, In Situ Hybridization, Fluorescence, Phenotype, Predictive Value of Tests, Pregnancy, Turkey, Ultrasonography, Prenatal, Chromosome Aberrations, Chromosome Disorders genetics, Genetic Testing methods, Prenatal Diagnosis methods
- Abstract
Unlabelled: Objective: The aim of this study was presentation of the ultrasonographic findings and perinatal autopsy of cases with rare chromosomal abnormalities., Material and Method: A total of 10125 prenatal cases over 17 years including 8731 amniocentesis, 973 chorionic villus sampling, and 421 fetal blood sampling cases were evaluated for prenatal cytogenetic diagnosis. Conventional cytogenetic studies, fluorescence in situ hybridization studies, and Array-CGH analysis techniques were used for genetic analysis., Results: A structural chromosomal abnormality was observed in 95 cases. The most frequently observed structural abnormalities were balanced translocations with a frequency of 53.7% (51 cases) followed by unbalanced translocations (16.8%), inversions (11.6%), supernumerary marker chromosomes (8.4%), duplications (4.2%), deletions and ring chromosomes (2.1%) and complex translocation (1.1%). Rare structural chromosomal abnormalities including de novo balanced translocations, unbalanced translocations, inversions, duplications, deletions, ring chromosomes, and supernumerary marker chromosomes were detected in 24 cases., Conclusion: The rate of rare chromosomal abnormalities varies from 2.4% (South East Ireland) to 12.9% (Northern England) in Europe with a total rate of 7.4/10 000 births. In our study, the overall rate of chromosomal abnormality in prenatal cytogenetic diagnosis was 3.7%, similar to South East Ireland. Ultrasonographic and perinatal autopsy findings of the cases with rare structural chromosomal abnormalities are important for proper genetic counseling for further similar cases.
- Published
- 2015
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27. Chromosome abnormalities identified in 457 spontaneous abortions and their histopathological findings.
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Yakut S, Toru HS, Çetin Z, Özel D, Şimşek M, Mendilcioğlu İ, and Lüleci G
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- Female, Genetic Predisposition to Disease, Gestational Age, Humans, Karyotyping, Maternal Age, Phenotype, Predictive Value of Tests, Pregnancy, Risk Factors, Tissue Culture Techniques, Abortion, Spontaneous genetics, Abortion, Spontaneous pathology, Chromosome Aberrations, Chromosomes, Human
- Abstract
Objective: About 15% of clinically recognized pregnancies result in spontaneous abortion in the first trimester and the vast majority of these are the result of chromosome abnormalities. Studies of chromosomal constitutions of first trimester spontaneous abortions have revealed that at least 50% of the abortions have an abnormal karyotype. In this study we aimed to report the single centre experience of anomalies detected in spontaneous abortions., Material and Method: We present rare numerical and structural cytogenetic abnormalities detected in spontaneous abortion materials and the histopathological findings of rest material of abortion specimens in our study population., Results: Among 457 cases, 382 were successfully karyotyped while cell culture of 75 cases failed. Cytogenetic abnormalities were detected in 127 of 382 cases (33.24%). Autosomal trisomies were the predominant chromosomal abnormalities with a frequency of 48.8%. Structural chromosomal abnormalities were infrequent in conception materials. The mean age of the mothers was highest in trisomy group, the difference being significantly important (ANOVA p < 0.001). The most frequent chromosomal abnormalities were Turner syndrome, triploidy and trisomy of chromosome 16 followed by trisomy of chromosomes 22 and 21 and tetraploidy. Double trisomies and structural chromosomal abnormalities were rare. Trisomies were more frequent in advanced maternal age., Conclusion: Detection of chromosomal abnormalities in spontaneous abortion materials is very important to clarify the causes of loss of pregnancy. Detection of structural chromosomal abnormalities in the cases and their carrier parents can provide proper genetic counseling to these families. These families can be directed towards pre-implantation genetic diagnosis to prevent further pregnancies with complications.
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- 2015
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28. Mitochondrial ATPase subunit 6 and cytochrome B gene variations in obese Turkish children.
- Author
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Demir D, Türkkahraman D, Aktaş Samur A, Lüleci G, Akçurin S, and Alper ÖM
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- Adolescent, Child, Consanguinity, Female, Humans, Male, Turkey, Cytochromes b genetics, Mitochondrial Proton-Translocating ATPases genetics, Pediatric Obesity genetics
- Abstract
Objective: Due to the importance of energy metabolism in mitochondria, mitochondrial genome variations are evaluated in energy-related diseases such as obesity. To date, several nuclear genes were found to be related to obesity. Our aim in this study was to investigate the presence of polymorphisms in mitochondrial ATPase subunit 6 (mt-ATP6) and cytochrome b (mt-CytB) genes that may be associated with childhood obesity., Methods: The mt-ATP6 and mt-CytB genes were amplified and entirely sequenced in a series of 100 obese and in an equal number of healthy Turkish children aged between 6-14 years., Results: A total of 118 synonymous and nonsynonymous variations were detected in the obese and control groups. Only two previously reported synonymous substitutions (mt.8614T>C and mt.8994G>A) in the mt-ATP6 gene were found to be significantly higher in the obese group compared to the control group (p<0.05). In the mt-ATP6 gene, one novel nonsynonymous substitution (mt.8726C>T) and one novel synonymous substitution (mt.9108A>T) were found. In the mt-CytB gene, one nonsynonymous substitution (mt.14880T>C) and two synonymous substitutions (mt.14891C>T and mt.15091C>T) were novel substitutions., Conclusion: Two synonymous substitutions (mt.8614T>C and mt.8994G>A) in the mt-ATP6 gene may be associated with childhood obesity. Our study provides the first data about mitochondrial genome variations in a Turkish obese population and also the first in obese children. More cases should be screened in obese groups in order to understand the effects of mitochondrial polymorphisms in the development of obesity.
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- 2014
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29. Clinicogenetic study of Turkish patients with syndromic craniosynostosis and literature review.
- Author
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Nur BG, Pehlivanoğlu S, Mıhçı E, Calışkan M, Demir D, Alper OM, Kayserili H, and Lüleci G
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- Adolescent, Adult, Child, Child, Preschool, DNA Mutational Analysis, Exons, Female, Humans, Infant, Male, Mutation, Young Adult, Acrocephalosyndactylia genetics, Craniofacial Dysostosis genetics, Craniosynostoses genetics, Receptor, Fibroblast Growth Factor, Type 2 genetics
- Abstract
Background: Fibroblast growth factor receptor 2 mutations have been associated with the craniosynostotic conditions of Apert, Crouzon, Pfeiffer, Saethre-Chotzen, Jackson-Weiss, Beare-Stevenson cutis gyrata, and Antley-Bixler syndromes in various ethnic groups., Methods: Thirty-three unrelated Turkish patients (12 with Apert syndrome, 14 with Crouzon syndrome, six with Pfeiffer syndrome, and one with Saethre-Chotzen syndrome) and 67 nonsyndromic craniosynostosis patients were screened for mutations in exons IIIa and IIIc of the FGFR2 gene by denaturing high-performance liquid chromatography and confirmed by direct sequencing., Results: We detected several pathogenic mutations in 11/33 (33%) patients with Apert syndrome (four with p.Pro253Arg; seven with p.Ser252Trp) and 8/33 (24%) patients with Crouzon syndrome (three with p.Trp290Arg, one with p.Cys342Tyr, p.Cys278Phe, p.Gln289Pro, and a novel p.Tyr340Asn mutation) and five (15%) with Pfeiffer syndrome (p.Cys342Arg, p.Pro253Arg, p.Trp290Arg, and p.Ser351Cys). No FGFR2 gene mutation was detected in any of the patients with Saethre-Chotzen syndrome and nonsyndromic craniosynostosis., Conclusions: Our results indicate that the majority of Turkish patients with syndromic craniosynostosis have detectable genetic changes with an overall frequency of 72.7%. Because this is the first molecular genetic report from a Turkish cohort, the identified spectrum profile of FGFR2 mutations of the syndromic craniosynostotic patients would be very helpful for understanding the genotype-phenotype relationship and has a great value for diagnosis, prognosis, and genetic counseling., (Copyright © 2014 Elsevier Inc. All rights reserved.)
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- 2014
- Full Text
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30. The association of Klinefelter syndrome and multiple pterygium syndrome: an unusual presentation.
- Author
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Nur BG, Altıok-Clark O, Toylu A, Lüleci G, and Mıhçı E
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- Abnormalities, Multiple genetics, Child, Humans, Karyotyping, Male, Malignant Hyperthermia genetics, Skin Abnormalities genetics, Klinefelter Syndrome complications, Malignant Hyperthermia complications, Skin Abnormalities complications
- Abstract
Multiple pterygium syndrome is characterized by a number of phenotypic features, small stature, webbing of the neck, elbows, and/or knees, and joint contractures. In this report, we present an 11-year-old boy who had the classical findings of multiple pterygium syndrome, and his chromosomal analysis revealed a 47,XXY karyotype. Interestingly, he did not show any of the main clinical signs of Klinefelter syndrome. This patient appears to be the first reported case in the literature in which a non-mosaic 47,XXY karyotype has been found in a patient with multiple pterygium syndrome. The aim of the present report is to describe a non-classic Klinefelter syndrome associated with multiple pterygium syndrome and to emphasize the importance of karyotype analysis in patients with multiple pterygium syndrome.
- Published
- 2013
31. Genomic large rearrangement screening of BRCA1 and BRCA2 genes in high-risk Turkish breast/ovarian cancer patients by using multiplex ligation-dependent probe amplification assay.
- Author
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Manguoğlu E, Güran S, Yamaç D, Simşek M, Akdeniz S, Colak T, Gülkesen H, and Lüleci G
- Subjects
- Breast Neoplasms ethnology, Breast Neoplasms, Male ethnology, Checkpoint Kinase 2, Female, Genetic Predisposition to Disease, Humans, Male, Ovarian Neoplasms ethnology, Pedigree, Protein Serine-Threonine Kinases genetics, Risk Assessment, Risk Factors, Sequence Deletion, Turkey, BRCA1 Protein genetics, BRCA2 Protein genetics, Breast Neoplasms genetics, Breast Neoplasms, Male genetics, Gene Rearrangement, Genetic Testing, Mass Screening methods, Nucleic Acid Amplification Techniques, Ovarian Neoplasms genetics
- Abstract
In this study, MLPA assay was performed for detection of large rearrangements of BRCA1 and BRCA2 genes in 16 familial, 29 early onset, 3 male breast cancer, and 2 bilateral breast/ovarian cancer high risk Turkish index cases. MLPA assay for all exons of both genes and for 1100delC variant of CHEK2 gene were performed. Analyses, revealed no large genomic rearrangements in both genes, and, no 1100del variant in CHEK2 gene. Our data which represents the first results for Turkish patients, suggest that, the frequency of BRCA1 and BRCA2 genes' large rearrangements is very low.
- Published
- 2011
- Full Text
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32. Germline mutations of BRCA1 and BRCA2 genes in Turkish breast, ovarian, and prostate cancer patients.
- Author
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Manguoğlu E, Güran S, Yamaç D, Colak T, Simşek M, Baykara M, Akaydın M, and Lüleci G
- Subjects
- Chromatography, High Pressure Liquid, DNA Mutational Analysis, Electrophoresis methods, Female, Humans, Male, Polymorphism, Genetic, Risk, Turkey, Breast Neoplasms genetics, Genes, BRCA1, Genes, BRCA2, Germ-Line Mutation, Ovarian Neoplasms genetics, Prostatic Neoplasms genetics
- Abstract
Distribution and prevalence of germline mutations in BRCA1 and BRCA2 differ among different populations. For the Turkish population, several studies have addressed high-risk breast cancer and ovarian cancer (BC-OC) patients. In most studies, both genes were analyzed in part, and a quite heterogeneous mutation spectrum was observed. For high-risk Turkish prostate cancer (PCa) patients, however, there are no data available about mutations of germline BRCA genes. To accurately determine the contribution of germline mutations in BRCA1 and BRCA2 in Turkish BC, OC, and PCa high-risk patients, 106 high-risk BC-OC patients, 50 high-risk PCa patients, and 50 control subjects were recruited. The study represents the only full screening, to date, of a large series of Turkish high-risk BC-OC patients and the only study in Turkish high-risk PCa patients. Mutation screenings were performed on coding exons of both genes with either denaturing gradient gel electrophoresis or denaturing high performance liquid chromatography, or with both techniques. Three deleterious mutations in BRCA1 and three deleterious mutations in BRCA2 were detected in different BC-OC patients, and one truncating mutation was detected in a high-risk PCa patient. In addition, 28 different unclassified and mostly novel variants were detected in both genes, as well as several silent polymorphisms. These findings reflect the genetic heterogeneity of the Turkish population and are relevant to genetic counseling and clinical management., (Copyright © 2010 Elsevier Inc. All rights reserved.)
- Published
- 2010
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33. Subtelomeric rearrangements of dysmorphic children with idiopathic mental retardation reveal 8 different chromosomal anomalies.
- Author
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Mihçi E, Ozcan M, Berker-Karaüzüm S, Keser I, Taçoy S, Hapsolat S, and Lüleci G
- Subjects
- Child, Child, Preschool, Chromosome Banding, Chromosome Deletion, Cohort Studies, Female, Humans, In Situ Hybridization, Fluorescence, Infant, Male, Abnormalities, Multiple genetics, Chromosome Aberrations, Intellectual Disability genetics, Telomere genetics
- Abstract
Subtelomeric rearrangements are an important cause of both sporadic and familial idiopathic mental retardation (MR) and/or congenital malformation syndromes. We report on a cohort of 107 children with idiopathic MR and normal karyotype 450-550 band level by GTG banding screened for subtelomeric rearrangements by multiprobe fluorescence in situ hybridization (FISH). In these cases, five patients had de novo deletions (1p deletion was found in 2 cases; 3q deletion, 9p and 9q deletions were found in 1 case each) and four patients had unbalanced rearrangements [der(5)t(5;15)(pter;qter)pat in 2 patients who were siblings, rec(10)dup(10p)inv(10)(p13q26)mat in 1 patient and der(18)t(18;22)(qter;qter) de novo in 1 patient]. Our study confirms that the subtelomeric rearrangements are a significant cause of idiopathic MR with dysmorphic features.
- Published
- 2009
34. Aplasia cutis congenita: three cases with three different underlying etiologies.
- Author
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Mihçi E, Erişir S, Taçoy S, Lüleci G, Alpsoy E, and Oygür N
- Subjects
- Abnormalities, Drug-Induced, Abnormalities, Multiple, Anticonvulsants adverse effects, Chromosomes, Human, Pair 13, Female, Humans, Infant, Newborn, Male, Rubella Syndrome, Congenital complications, Scalp abnormalities, Trisomy, Valproic Acid adverse effects, Ectodermal Dysplasia etiology, Ectodermal Dysplasia genetics
- Abstract
Aplasia cutis congenita (ACC) is an uncommon condition in which localized or widespread areas of skin are absent or scarred at birth. There is no single underlying cause of ACC, as it simply represents a physical finding that reflects a disruption of intrauterine skin development. Here we report three cases of ACC of the scalp with three different etiologies: congenital rubella syndrome, trisomy 13 and fetal valproate syndrome. The aim of the present report is to increase awareness of these skin defects and emphasize the importance of underlying etiologies.
- Published
- 2009
35. Prenatal diagnosis of a de novo supernumerary marker chromosome originating from chromosome 16.
- Author
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Yakut S, Cetin Z, Simşek M, Karaüzüm SB, Tükün A, and Lüleci G
- Subjects
- Adult, Comparative Genomic Hybridization, Female, Humans, Pregnancy, Spectral Karyotyping, Amniocentesis, Chromosome Aberrations, Chromosomes, Human, Pair 16 genetics, Genetic Counseling, Genetic Markers
- Abstract
Prenatal diagnosis of a de novo supernumerary marker chromosome originating from chromosome 16: A 37 year old pregnant woman was referred for amniocentesis at 18 weeks of gestation due to advanced maternal age and abnormal serum biochemistry. A nonsatellited, monocentric marker chromosome was observed with a frequency of 57% in cultured amniocytes. Parental karyotypes were normal. The marker chromosome was found to be derived from chromosome 16 by FISH using CEP16 and WCP16 probes. Marker chromosomes were not painted with M-FISH probe mixture, indicating an exclusively heterochromatin nature. CGH analysis using genomic DNA isolated from uncultured amniocytes also supported the M-FISH results. Genetic counseling was given to parents and the family decided to continue the pregnancy to term. The baby was born at 36 weeks of gestation without any dysmorphic features. Follow-up at 7 months of age revealed no developmental abnormalities.
- Published
- 2009
36. Mutational spectrum of MYO15A: the large N-terminal extension of myosin XVA is required for hearing.
- Author
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Nal N, Ahmed ZM, Erkal E, Alper OM, Lüleci G, Dinç O, Waryah AM, Ain Q, Tasneem S, Husnain T, Chattaraj P, Riazuddin S, Boger E, Ghosh M, Kabra M, Riazuddin S, Morell RJ, and Friedman TB
- Subjects
- Alternative Splicing, Chromosomes, Human, Pair 17, Exons, Family Health, Female, Genetic Linkage, Hearing, Humans, Male, Models, Genetic, Pedigree, Protein Isoforms, DNA Mutational Analysis, Deafness genetics, Myosins genetics, Myosins physiology
- Abstract
Human MYO15A is located on chromosome 17p11.2, has 66 exons and encodes unconventional myosin XVA. Recessive mutations of MYO15A are associated with profound, nonsyndromic hearing loss DFNB3 in humans, and deafness and circling behavior in shaker 2 mice. In the inner ear, this motor protein is necessary for the development of hair cell stereocilia, which are actin-filled projections on the apical surface and the site of mechanotransduction of sound. The longest isoform of myosin XVA has 3,530 amino acid residues. Two isoform classes of MYO15A are distinguished by the presence or absence of 1,203 residues preceding the motor domain encoded by alternatively-spliced exon 2. It is not known whether this large N-terminal extension of myosin XVA is functionally necessary for hearing. We ascertained approximately 600 consanguineous families segregating hereditary hearing loss as a recessive trait and found evidence of linkage of markers at the DFNB3 locus to hearing loss in 38 of these families ascertained in Pakistan (n=30), India (n=6), and Turkey (n=2). In this study, we describe 16 novel recessive mutations of MYO15A associated with severe to profound hearing loss segregating in 20 of these DFNB3-linked families. Importantly, two homozygous mutant alleles-c.3313G>T (p.E1105X) and c.3334delG (p.G1112fsX1124) of MYO15A-located in exon 2 are associated with severe to profound hearing loss segregating in two families. These data demonstrate that isoform 1, containing the large N-terminal extension, is also necessary for normal hearing., (Copyright 2007 Wiley-Liss, Inc.)
- Published
- 2007
- Full Text
- View/download PDF
37. Maternal origin and clinical findings in a case with trisomy 22.
- Author
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Mihçi E, Taçoy S, Yakut S, Ongun H, Keser I, Kiliçarslan B, Bağci G, and Lüleci G
- Subjects
- Fatal Outcome, Female, Humans, Infant, Newborn, Trisomy diagnosis, Trisomy genetics, Abnormalities, Multiple, Chromosomes, Human, Pair 22, Trisomy physiopathology
- Abstract
We report a newborn girl with multiple congenital anomalies whose chromosomal analysis showed complete trisomy 22. Her phenotype included microcephaly, epicanthus, hypertelorism, micrognathia, cleft palate, microtia, and preauricular tag. She died in the 24th post-natal hour. Trisomy 22 was shown by fluorescence in situ hybridization technique and the parental origin of the extra chromosome was found to be maternal by DNA microsatellite marker analysis of chromosome 22. Postmortem examination revealed the presence of atrioseptal defect and stasis in the biliary canals. We believe that this patient will contribute to the literature both by clinical findings and short life span associated with maternal origin of extra chromosome 22.
- Published
- 2007
38. Psychological effects of amniocentesis on women and their spouses: importance of the testing period and genetic counseling.
- Author
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Kukulu K, Buldukoglu K, Keser I, Keser I, Simşek M, Mendilcioğlu I, and Lüleci G
- Subjects
- Adult, Attitude, Feeding Behavior, Female, Fetal Diseases diagnosis, Humans, Male, Middle Aged, Pregnancy, Surveys and Questionnaires, Adaptation, Psychological, Amniocentesis psychology, Genetic Counseling psychology, Spouses psychology
- Abstract
Objective: To evaluate both women's and their spouses' reasons for undergoing amniocentesis, their concerns relating to the procedure as well as their psychological reactions and coping mechanisms during the testing period., Methods: Eighty-five women undergoing amniocentesis and their spouses took part in the study. The couples completed a questionnaire that provided demographic data and insights into their experiences of amniocentesis., Results: Age was the main reason for undergoing amniocentesis. When they first learned that they were going to undergo amniocentesis, women were more concerned about the potential danger to their fetus than their spouses. Most of participants believed that their pregnancy would continue after amniocentesis. However, they also stated that they were prepared for an abortion. Uncertainty and tension were two significant emotions experienced by couples while waiting for the test results. For the majority of women (80%) and men (42.3%) the strongest support was provided by their spouses during this period. In summary, we can conclude that the test did have a major psychological impact on both women and their spouses, but did not have a negative impact on their coping mechanisms., Conclusion: The psychological impact of amniocentesis on women and their spouses does not constitute a major obstacle to their ability to cope. However, a certain number of couples reported feelings of uncertainty, tension and anxiety about fetal injury. We strongly suggest that counseling should be given to high-risk families and that prenatal/antenatal care units must be established.
- Published
- 2006
- Full Text
- View/download PDF
39. combination of IVS2.849 A-G witH IVS1.1 G-A: a mutation of beta-globin gene in a Turkish beta-thalessemia major patient.
- Author
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Manguoğlu E, Sargin CF, Nal N, Keser I, Küpesiz A, Yeşilipek A, and Lüleci G
- Subjects
- DNA Mutational Analysis, Family Health, Female, Humans, Infant, RNA Splice Sites genetics, Turkey, Globins genetics, Mutation, beta-Thalassemia genetics
- Abstract
Beta-thalassemia, which is an autosomal recessive disease, is among the most common hemoglobinopathies in Antalya, Turkey. Mutations found in Turkish beta-thalassemia patients constitute a heterogeneous group, which is mostly composed of point mutations and, only in very rare cases, a deletion or an insertion causes affected or carrier phenotypes. Reverse dot blot hybridization (RDBH) method is used for screening common mutations, and sequence analysis and silver staining were performed consecutively to detect any uncommon mutation. The authors report a first Turkish family with a rare variant--intervening sequence 2 (IVS2) 849 (A-G). The proband's mother and father were determined as carriers of IVS2.849 (A-G) and IVS1.1 (G-A) mutations, respectively. Proband is the first child of the family and she has an IVS2.849 (A-G)/IVS1.1 (G-A) genotype with ss-thalassemia major phenotype. Prenatal diagnosis was performed for the second child, and genotype of the fetus was determined as IVS2.849 (A-G)/Normal. This first report of IVS2.849 (A-G) mutation in Turkish population shows that there are many more mutations contributing the heterogeneity of the mutation spectrum of beta-globin gene in the Turkish population, which indicates migrations of different ethnic origins.
- Published
- 2005
- Full Text
- View/download PDF
40. Compound heterozygosity for two beta chain variants: the mildly unstable Hb Tyne (codon 5 Pro→Ser) and HbS (codon 6 Glu→Val).
- Author
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Güzeloğlu Kayışlı Ö, Keser İ, Özeş ON, Canatan D, Yeşilipek A, and Lüleci G
- Abstract
Compound heterozygosity for Hb Tyne and HbS, that is very rare, was identified by direct DNA sequencing of the beta-globin gene in a Turkish patient. Hematological investigation of a girl at the age of 9 due to the presence of HbS (40.7%) led to the identification of a compound heterozygosity at codons 5-6. This was found to be the result of substitution of cytosine (C) for thymidine (T) at the fifth position and a substitution of adenine (A) for thymidine (T) at the sixth position of the beta globin gene. As a result of these mutations, the order of amino acids at codons 5-6 was changed from Pro-Glu to Ser-Val, respectively. Since the co-inheritance of Hb Tyne and HbS had not been reported in literature before, our case set an example for identification of coinheritance of Hb Tyne and HbS for the first time. Therefore, such cases may be considered as an important example for understanding the structural variants of hemoglobin and may provide important clues for critical amino acids responsible for stabilization of hemoglobin tetrameric structure and genetic counseling.
- Published
- 2005
41. M-FISH applications in clinical genetics.
- Author
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Cetin Z, Berker Karaüzüm S, Yakut S, Mihçi E, Baumer A, Wey E, Taçoy S, Bağci G, and Lüleci G
- Subjects
- Adult, Child, Preschool, Chromosomes, Human, Pair 15 genetics, Chromosomes, Human, Pair 18 genetics, Chromosomes, Human, Pair 20 genetics, Chromosomes, Human, Pair 8 genetics, Chromosomes, Human, Pair 9 genetics, Cytogenetics, Female, Humans, Infant, Karyotyping, Male, Parents, In Situ Hybridization, Fluorescence methods, Trisomy genetics
- Abstract
Until recently, presence of de novo marker or derivative chromosomes was quite problematic for genetic counseling especially in prenatal diagnosis, because characterization of marker and derivative chromosomes by conventional cytogenetic techniques was nearly impossible. However, recently developed molecular cytogenetic technique named Multicolor Fluorescence in Situ Hybridization (M-FISH) which paints all human chromosomes in 24 different colors allows us to characterize marker and derivative chromosomes in a single hybridization. In this study, we applied M-FISH to determine the origin of 3 marker and 3 derivative chromosomes. Marker chromosomes were found to originate from chromosome 15 in two postnatal and one prenatal case. Of these, one of the postnatal cases displayed clinical findings of inv dup (115) syndrome and the other of infertility, and the prenatal case went through amniocentesis due to the triple test results. Karyotypes of the patients with derivative chromosomes were designated as 46,XY,der (21)t(1;21)(q32;p11), 46,XX,der(8)t(8;9)(p23;p22) and 46,XX,der(18)t(18;20)(q32;p11.2) according to cytogenetic and M-FISH studies. All of the M-FISH results were confirmed with locus specific or whole chromosome painting probes. The case with der (8)t(8;9) had trisomy 9(p22-pter) and monosomy 8(p23-pter) due to this derivative chromosome. The case with der(18)t(18;20) had trisomy 20(p11.2-pter) and monosomy 18(q32-qter). Parental origins of the derivative chromosomes were analyzed using microsatellite markers located in the trisomic chromosomal segments. Patients' clinical findings were compared with the literature.
- Published
- 2005
42. A case with de novo interstitial deletion of chromosome 7q21.1-q22.
- Author
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Manguoğlu E, Berker-Karaüzüm S, Baumer A, Mihçi E, Taçoy S, Lüleci G, and Schinzel A
- Subjects
- Abnormalities, Multiple diagnosis, Baclofen, Child, Chromosome Breakage, Developmental Disabilities diagnosis, Female, Humans, In Situ Hybridization, Fluorescence, Abnormalities, Multiple genetics, Chromosome Deletion, Chromosomes, Human, Pair 7 genetics, Developmental Disabilities genetics, Genitalia, Female abnormalities
- Abstract
A case with de novo interstitial deletion of chromosome 7q21.1-q22: A patient with multiple congenital anomalies was found to have a de novo proximal interstitial deletion of chromosome 7q21.1-q22. The patient was 10.5 years of age, and manifestations include growth retardation (below 3rd percentile), mental retardation, mild microcephaly, hypersensitivity to noise, mild spasticity, short palpebral fissures, alternant exotropia, compensated hypermetropic astigmatism, hypotelorism, hypoplastic labia majora and minora, clinodactyly of fingers 4 and 5. Molecular studies revealed that the deletion had a paternal origin, while chromosomes of both parents cytogenetically were shown to be normal. Molecular, and fluorescence in situ hybridization (FISH) analyses confirmed no deletion at the Williams-Beuren Syndrome region. Some of the heterogeneous clinical findings were consistent with previously reported cases of same chromosomal breakpoints.
- Published
- 2005
43. Lack of association between RNASEL Arg462Gln variant and the risk of breast cancer.
- Author
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Sevinç A, Yannoukakos D, Konstantopoulou I, Manguoglu E, Lüleci G, Colak T, Akyerli C, Colakoglu G, Tez M, Sayek I, Gerassimos V, Nasioulas G, Papadopoulou E, Florentin L, Kontogianni E, Bozkurt B, Kocabas NA, Karakaya AE, Yulug IG, and Ozçelik T
- Subjects
- Adult, Aged, Aged, 80 and over, Alleles, Breast Neoplasms blood, Breast Neoplasms enzymology, Case-Control Studies, DNA, Neoplasm blood, DNA, Neoplasm genetics, Female, Humans, Middle Aged, Mutation, Risk Factors, Breast Neoplasms genetics, Endoribonucleases genetics
- Abstract
Background: The RNASEL G1385A variant was recently found to be implicated in the development of prostate cancer. Considering the function of RNase L and the pleiotropic effects of mutations associated with cancer, we sought to investigate whether the RNASEL G1385A variant is a risk factor for breast cancer., Patients and Methods: A total of 453 breast cancer patients and 382 age- and sex-matched controls from Greece and Turkey were analyzed. Genotyping for the RNASEL G1385A variant was performed using an Amplification Refractory Mutation System (ARMS)., Results: Statistical evaluation of the RNASEL G1385A genotype distribution among breast cancer patients and controls revealed no significant association between the presence of the risk genotype and the occurrence of breast cancer., Conclusion: Although an increasing number of studies report an association between the RNASEL G1385A variant and prostate cancer risk; this variant does not appear to be implicated in the development of breast cancer.
- Published
- 2004
44. AZF microdeletions on the Y chromosome of infertile men from Turkey.
- Author
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Sargin CF, Berker-Karaüzüm S, Manguoğlu E, Erdoğru T, Karaveli S, Gülkesen KH, Baykara M, and Lüleci G
- Subjects
- Cohort Studies, Female, Genetic Loci, Humans, Male, Polymerase Chain Reaction methods, Sequence Tagged Sites, Turkey, Chromosome Deletion, Chromosomes, Human, Y, Infertility, Male genetics, Oligospermia genetics, Seminal Plasma Proteins genetics, Sex Chromosome Aberrations
- Abstract
Intervals V and VI of Yq11.23 regions contain responsible genes for spermatogenesis, and are named as "azoospermia factor locus" (AZF). Deletions in these genes are thought to be pathogenetically involved in some cases of male infertility associated with azoospermia or oligozoospermia. The aim of this study was to establish the prevalence of microdeletions on the Y chromosome in infertile Turkish males with azoospermia or oligozoospermia. We applied multiplex polymerase chain reaction (PCR) using several sequence-tagged site (STS) primer sets, in order to determine Y chromosome microdeletions. In this study, 61 infertile males were enrolled for the molecular AZF screening program. In this cohort, one infertile male had 46,XX karyotype and the remaining had 46,XY karyotypes. Forty-eight patients had a diagnosis of azoospermia and 13 had oligozoospermia. Microdeletions in AZFa, AZFb and AZFc (DAZ gene) regions were detected in two of the 60 (3.3%) idiopathic infertile males with normal karyotypes and a SRY translocation was determined on 46,XX male. Our findings suggest that genetic screening should be advised to infertile men before starting assisted reproductive treatments.
- Published
- 2004
- Full Text
- View/download PDF
45. Germline mutations in the BRCA1 and BRCA2 genes in Turkish breast/ovarian cancer patients.
- Author
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Manguoglu AE, Lüleci G, Ozçelik T, Colak T, Schayek H, Akaydin M, and Friedman E
- Subjects
- Adult, Aged, BRCA1 Protein genetics, BRCA2 Protein genetics, DNA Mutational Analysis methods, Female, Humans, Male, Middle Aged, Turkey, Breast Neoplasms genetics, Breast Neoplasms, Male genetics, Genes, BRCA1, Genes, BRCA2, Germ-Line Mutation genetics, Ovarian Neoplasms genetics
- Abstract
In this study we genotyped Turkish breast/ovarian cancer patients for BRCA1/BRCA2 mutations: protein truncation test (PTT) for exon 11 BRCA1 of and, multiplex PCR and denaturing gradient gel electrophoresis (DGGE) for BRCA2, complemented by DNA sequencing. In addition, a modified restriction assay was used for analysis of the predominant Jewish mutations: 185delAG, 5382InsC, Tyr978X (BRCA1) and 6174delT (BRCA2). Eighty three breast/ovarian cancer patients were screened: twenty three had a positive family history of breast/ovarian cancer, ten were males with breast cancer at any age, in eighteen the disease was diagnosed under 40 years of age, one patient had ovarian cancer in addition to breast cancer and one patient had ovarian cancer. All the rest (n=30) were considered sporadic breast cancer cases. Overall, 3 pathogenic mutations (3/53-5.7%) were detected, all in high risk individuals (3/23-13%): a novel (2990insA) and a previously described mutation (R1203X) in BRCA1, and a novel mutation (9255delT) in BRCA2. In addition, three missense mutations [two novel (T42S, N2742S) and a previously published one (S384F)] and two neutral polymorphisms (P9P, P2532P) were detected in BRCA2. Notably none of the male breast cancer patients harbored any mutation, and none of the tested individuals carried any of the Jewish mutations. Our findings suggest that there are no predominant mutations within exon 11 of the BRCA1 and in BRCA2 gene in Turkish high risk families., (Copyright 2003 Wiley-Liss, Inc.)
- Published
- 2003
- Full Text
- View/download PDF
46. Evaluation of complex inheritance involving the most common Bardet-Biedl syndrome locus (BBS1).
- Author
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Mykytyn K, Nishimura DY, Searby CC, Beck G, Bugge K, Haines HL, Cornier AS, Cox GF, Fulton AB, Carmi R, Iannaccone A, Jacobson SG, Weleber RG, Wright AF, Riise R, Hennekam RC, Lüleci G, Berker-Karauzum S, Biesecker LG, Stone EM, and Sheffield VC
- Subjects
- Amino Acid Sequence, Animals, Chromosomes, Human, Pair 11, Cohort Studies, Conserved Sequence, Evolution, Molecular, Genes, Recessive, Haplotypes, Humans, Mice, Microtubule-Associated Proteins, Molecular Sequence Data, Mutation, Pedigree, Phylogeny, Proteins chemistry, Sequence Homology, Amino Acid, Bardet-Biedl Syndrome genetics, Proteins genetics
- Abstract
Bardet-Biedl syndrome (BBS) is a genetic disorder with the primary features of obesity, pigmentary retinopathy, polydactyly, renal malformations, mental retardation, and hypogenitalism. Patients with BBS are also at increased risk for diabetes mellitus, hypertension, and congenital heart disease. BBS is known to map to at least six loci: 11q13 (BBS1), 16q21 (BBS2), 3p13-p12 (BBS3), 15q22.3-q23 (BBS4), 2q31 (BBS5), and 20p12 (BBS6). Although these loci were all mapped on the basis of an autosomal recessive mode of inheritance, it has recently been suggested-on the basis of mutation analysis of the identified BBS2, BBS4, and BBS6 genes-that BBS displays a complex mode of inheritance in which, in some families, three mutations at two loci are necessary to manifest the disease phenotype. We recently identified BBS1, the gene most commonly involved in Bardet-Biedl syndrome. The identification of this gene allows for further evaluation of complex inheritance. In the present study we evaluate the involvement of the BBS1 gene in a cohort of 129 probands with BBS and report 10 novel BBS1 mutations. We demonstrate that a common BBS1 missense mutation accounts for approximately 80% of all BBS1 mutations and is found on a similar genetic background across populations. We show that the BBS1 gene is highly conserved between mice and humans. Finally, we demonstrate that BBS1 is inherited in an autosomal recessive manner and is rarely, if ever, involved in complex inheritance.
- Published
- 2003
- Full Text
- View/download PDF
47. Existence of acute lymphoblastic leukemia and osteosarcoma in a child.
- Author
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Karaüzüm SB, Hazar V, Açikbas I, Gelen T, Yessilipek MA, and Lüleci G
- Subjects
- Child, Encephalitis, Varicella Zoster complications, Female, Genes, Retinoblastoma genetics, Genetic Predisposition to Disease, Humans, Karyotyping, Osteosarcoma genetics, Polymerase Chain Reaction, Precursor Cell Lymphoblastic Leukemia-Lymphoma genetics, Osteosarcoma complications, Precursor Cell Lymphoblastic Leukemia-Lymphoma complications
- Abstract
The existence of acute lymphoblastic leukemia (ALL) and osteosarcoma is described. An 8-year-old girl had osteosarcoma diagnosed on radiologic and pathologic examination during ALL maintenance treatment. Cytogenetic analyses in primary cell culture of osteosarcoma tissue from the patient showed complex chromosomal abnormalities including t(1;19), usually seen in B precursor cell ALL, and del 13, found in a great majority of primary osteosarcomas. To show the possibility of the existence of the genetic susceptibility caused by gene rearrangements, we used molecular technique. But we could not determine any association between gene and genetic susceptibility.
- Published
- 2002
- Full Text
- View/download PDF
48. Identification of the gene (BBS1) most commonly involved in Bardet-Biedl syndrome, a complex human obesity syndrome.
- Author
-
Mykytyn K, Nishimura DY, Searby CC, Shastri M, Yen HJ, Beck JS, Braun T, Streb LM, Cornier AS, Cox GF, Fulton AB, Carmi R, Lüleci G, Chandrasekharappa SC, Collins FS, Jacobson SG, Heckenlively JR, Weleber RG, Stone EM, and Sheffield VC
- Subjects
- Gene Expression Regulation, Developmental, Homozygote, Humans, Microtubule-Associated Proteins, Molecular Sequence Data, Mutation, Mutation, Missense, Pedigree, Polymorphism, Single-Stranded Conformational, Proteins metabolism, Bardet-Biedl Syndrome genetics, Proteins genetics
- Abstract
Bardet-Biedl syndrome (BBS, OMIM 209900) is a genetic disorder with the primary features of obesity, pigmentary retinopathy, polydactyly, renal malformations, mental retardation and hypogenitalism. Individuals with BBS are also at increased risk for diabetes mellitus, hypertension and congenital heart disease. What was once thought to be a homogeneous autosomal recessive disorder is now known to map to at least six loci: 11q13 (BBS1), 16q21 (BBS2), 3p13 p12 (BBS3), 15q22.3 q23 (BBS4), 2q31 (BBS5) and 20p12 (BBS6). There has been considerable interest in identifying the genes that underlie BBS, because some components of the phenotype are common. Cases of BBS mapping ro BBS6 are caused by mutations in MKKS; mutations in this gene also cause McKusick-Kaufman syndrome (hydrometrocolpos, post-axial polydactyly and congenital heart defects). In addition, we recently used positional cloning to identify the genes underlying BBS2 (ref. 16) and BBS4 (ref. 17). The BBS6 protein has similarity to a Thermoplasma acidophilum chaperonin, whereas BBS2 and BBS4 have no significant similarity to chaperonins. It has recently been suggested that three mutated alleles (two at one locus, and a third at a second locus) may be required for manifestation of BBS (triallelic inheritance). Here we report the identification of the gene BBS1 and show that a missense mutation of this gene is a frequent cause of BBS. In addition, we provide data showing that this common mutation is not involved in triallelic inheritance.
- Published
- 2002
- Full Text
- View/download PDF
49. Netherton syndrome associated with idiopathic congenital hemihypertrophy.
- Author
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Yerebakan O, Uğuz A, Keser I, Lüleci G, Ciftçioğlu MA, Başaran E, and Alpsoy E
- Subjects
- Biopsy, Needle, Dermatitis, Atopic complications, Dermatitis, Atopic genetics, Developmental Disabilities diagnosis, Female, Humans, Ichthyosiform Erythroderma, Congenital complications, Ichthyosiform Erythroderma, Congenital genetics, Immunohistochemistry, Infant, Prognosis, Risk Assessment, Scalp Dermatoses complications, Scalp Dermatoses diagnosis, Scalp Dermatoses genetics, Syndrome, Abnormalities, Multiple diagnosis, Bone and Bones abnormalities, Dermatitis, Atopic diagnosis, Hair abnormalities, Ichthyosiform Erythroderma, Congenital diagnosis, Skin Abnormalities diagnosis
- Abstract
Netherton syndrome is a rare genodermatosis comprised of anichthyosiform dermatitis, hair shaft defects, and atopic features. Other problems associated with Netherton syndrome are delayed growth and development, immune abnormalities, recurrent infections, and intermittent aminoaciduria. We describe an 18-month-old girl with Netherton syndrome who had idiopathic congenital hemihypertrophy on her right side with contralateral benign nephromegaly in addition to the characteristic clinical signs of the syndrome. To our knowledge, this is the first case of Netherton syndrome associated with idiopathic congenital hemihypertrophy to be reported.
- Published
- 2002
- Full Text
- View/download PDF
50. Comparative genomic hybridization in ganglioneuroblastomas.
- Author
-
Toraman AD, Keser I, Lüleci G, Tunali N, and Gelen T
- Subjects
- Adolescent, Child, Child, Preschool, Chromosome Mapping, Humans, In Situ Hybridization, Fluorescence methods, Infant, Brain Neoplasms genetics, Chromosome Aberrations, DNA, Neoplasm genetics, Ganglioneuroblastoma genetics, Nucleic Acid Hybridization methods
- Abstract
The ganglioneuroblastoma are rare lesions with widespread neuronal differentiation that have been classified as intermediate stages between neuroblastoma and ganglioneuroma. To identify overall chromosome aberrations in ganglioneuroblastoma, we performed comparative genomic hybridization. All of the five tumor samples were found to exhibit multiple gains involving different chromosomal regions. Chromosomal gains displayed by chromosomes and chromosome loci were 2p25 approximately pter (60%), 5p15.1 approximately p15.3 (60%), 7 (60%), 13q22 approximately q31 (60%), and 22 (60%), which were detected as minimal common regions in all five tumor samples. Chromosome 22 gain, which had not been reported in neuronal tumors before, and novel site 13q22 approximately q31 may be considered to play an important role in progression and differentiation of ganglioneuroblastoma.
- Published
- 2002
- Full Text
- View/download PDF
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