1. Chitinophaga aurantiaca sp. nov., isolated from a soil sample from a tangerine field
- Author
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Jung-Eun Yang, Ho Bin Kim, Kyung Hwa Won, Tae-Hoo Yi, Sang Suk Kim, MooChang Kook, Sang-Yong Park, Su-Kyung Kim, Huan Trinh, and Zheng-Fei Yan
- Subjects
DNA, Bacterial ,0106 biological sciences ,0301 basic medicine ,Chitinophaga rupis ,Biology ,DNA, Ribosomal ,010603 evolutionary biology ,01 natural sciences ,Microbiology ,03 medical and health sciences ,chemistry.chemical_compound ,Cytosol ,RNA, Ribosomal, 16S ,Republic of Korea ,Botany ,Genotype ,Cluster Analysis ,Molecular Biology ,Phospholipids ,Phylogeny ,Soil Microbiology ,Phosphatidylglycerol ,Base Composition ,Oxidase test ,Phylogenetic tree ,Bacteroidetes ,Fatty Acids ,Quinones ,Nucleic Acid Hybridization ,Vitamin K 2 ,Sequence Analysis, DNA ,General Medicine ,16S ribosomal RNA ,Bacterial Typing Techniques ,030104 developmental biology ,chemistry ,Taxonomy (biology) ,Catalase test - Abstract
A Gram-stain-negative, facultatively anaerobic, non-motile and rod-shaped bacterial strain, designated THG-SD5.5T, was isolated from a soil sample collected in a tangerine field, Republic of Korea. According to the 16S rRNA gene sequence comparisons, the isolate was identified as a member of the genus Chitinophaga and to be closely related to Chitinophaga ginsengihumi KACC 17604T (97.9%) and Chitinophaga rupis KACC 14521T (97.5%). The 16S rRNA gene sequence similarities with other species of the genus Chitinophaga were in the range 92.8–95.5%. Catalase test was positive. Oxidase test was negative. The DNA G + C content was determined to be 46.1 mol%. DNA-DNA hybridization values between strain THG-SD5.5T and C. ginsengihumi KACC 17604T and C. rupis KACC 14521T were 45.1% and 15.6%, respectively. Strain THG-SD5.5T was also found to be able to grow at 24–33 °C, at 0–5% NaCl and at pH 5.5–9.0. The major fatty acids were identified as anteiso-C15:0, C16:0, anteiso-C17:0 and C18:0. The dominant respiratory quinone was identified as menaquinone-7 (MK-7). The polar lipids were found to be diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, an unidentified aminolipid, two unidentified phospholipids and three unidentified lipids. Based on these phenotypic, genotypic and phylogenetic characterisations, strain THG-SD5.5T (= KACC 19338T = CGMCC 1.16304T) is concluded to represent a novel species of the genus Chitinophaga, for which the name Chitinophaga aurantiaca sp. nov. is proposed.
- Published
- 2019