144 results on '"Kuruppu S"'
Search Results
2. DEFINING OBESITY USING BIOLOGICAL END POINT IN CHILDREN: O102
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Wickramasinghe, V P., Arambepola, C., Bandara, P., Abeysekera, M., Kuruppu, S., Dilshan, P., and Dissanayake, B S.
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- 2013
3. Presynaptic neuromuscular activity of venom from the brown-headed snake ( Glyphodon tristis)
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Kuruppu, S., Fry, B.G., and Hodgson, W.C.
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- 2005
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4. IN VITRO NEUROTOXIC AND MYOTOXIC EFFECTS OF THE VENOM FROM THE BLACK WHIP SNAKE (DEMANSIA PAPUENSIS)
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Kuruppu, S, Fry, Bryan G, and Hodgson, Wayne C
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- 2006
5. Cardiovascular, haematological and neurological effects of the venom of the Papua New Guinean small-eyed snake (Micropechis ikaheka) and their neutralisation with CSL polyvalent and black snake antivenoms
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Tibballs, J, Kuruppu, S, Hodgson, C W., Carroll, T, Hawdon, G, Sourial, M, Baker, T, and Winkel, K
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- 2003
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6. Clinico-pathological characteristics and outcome of upper urinary tract urothelial carcinoma presenting to a tertiary care urology unit in Sri Lanka
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Jayarajah, U, primary, Fernando, M H, additional, Herath, K B, additional, Kuruppu, S N, additional, Wickramanayaka, U L, additional, Fernando, I U, additional, De Silva, V C, additional, and Goonewardena, S A S, additional
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- 2018
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7. A clinico-pathological study of non-urothelial bladder cancers in a cohort of patients from a tertiary care urology unit in Sri Lanka
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Jayarajah, J. U., primary, Herath, K. B., additional, Fernando, M. H., additional, Kuruppu, S. N., additional, Wickramanayaka, U. L., additional, Fernando, I. U., additional, Lokuhetty, D. S., additional, De Silva, V. C., additional, and Goonewardena, S. A. S., additional
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- 2018
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8. Clinical outcomes in a cohort of patients with T1 high grade urothelial bladder cancer not receiving intravesical bacillus Calmette-Guerin: a 15 year experience
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Goonewardena, S A S, primary, Jayarajah, U, additional, Kuruppu, S N, additional, Herath, H M K B, additional, Fernando, D M H, additional, and Vickneswaran, K, additional
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- 2018
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9. Insulin resistance in a cohort of 5–15 year old children in urban Sri Lanka
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Wickramasinghe, V. P., primary, Arambepola, C., additional, Bandara, P., additional, Abeysekera, M., additional, Kuruppu, S., additional, Dilshan, P., additional, and Dissanayake, B. S., additional
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- 2017
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10. Use of waist to Height ratio in assessment metabolic derangements among normal and overweight/obese 5-15 year old individuals
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Wickramasinghe, V. P., primary, Arambepola, C., additional, Bandara, P., additional, Abeysekera, M., additional, Kuruppu, S., additional, Dilshan, P., additional, and Dissanayake, B. S., additional
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- 2017
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11. Canopy Venom: Proteomic Comparison among New World Arboreal Pit-Viper Venoms
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Debono, J, Cochran, C, Kuruppu, S, Nouwens, A, Rajapakse, NW, Kawasaki, M, Wood, K, Dobson, J, Baumann, K, Jouiaei, M, Jackson, TNW, Koludarov, I, Low, D, Ali, SA, Smith, AI, Barnes, A, Fry, BG, Debono, J, Cochran, C, Kuruppu, S, Nouwens, A, Rajapakse, NW, Kawasaki, M, Wood, K, Dobson, J, Baumann, K, Jouiaei, M, Jackson, TNW, Koludarov, I, Low, D, Ali, SA, Smith, AI, Barnes, A, and Fry, BG
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Central and South American pitvipers, belonging to the genera Bothrops and Bothriechis, have independently evolved arboreal tendencies. Little is known regarding the composition and activity of their venoms. In order to close this knowledge gap, venom proteomics and toxin activity of species of Bothriechis, and Bothrops (including Bothriopsis) were investigated through established analytical methods. A combination of proteomics and bioactivity techniques was used to demonstrate a similar diversification of venom composition between large and small species within Bothriechis and Bothriopsis. Increasing our understanding of the evolution of complex venom cocktails may facilitate future biodiscoveries.
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- 2016
12. Framework to manage multiple goals in community-based energy sharing network in smart grid
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Rathnayaka, Abekoon Jayalath Dinusha, Potdar, Vidyasagar, Dillon, T., Kuruppu, S., Rathnayaka, Abekoon Jayalath Dinusha, Potdar, Vidyasagar, Dillon, T., and Kuruppu, S.
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Smart grid has opened up a new role of ‘‘prosumer’’ in an energy value network, transforming many conventional energy consumers into prosumers, who not only generate green energy but also share the surplus with utilities and other consumers. The concept of a goal-oriented prosumer community group (PCG) has emerged recently as an effective way to fulfill sustainable energy exchange. Such community-based energy sharing networks comprise multiple irreconcilable objectives such as demand constraints, cost constraints, and income maximization. In many cases, one goal may be achievable only at the expense of other goals. This necessitates the development of an effective framework to manage the multiple goals and reduce the gap with their achievement levels. Therefore, in this research paper, an effective framework is developed to negotiate among the multiple goals and thus to define optimal mutual goals for each PCG in a more sustainable manner using multiple-criteria goal programming techniques. Simulation results are presented to illustrate how the methods work in practical situations, where each of the objective measure is given a target value and the unwanted deviations from this set are minimized in an achievement function.
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- 2015
13. Formation of virtual community groups to manage prosumers in smart grids
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Rathnayaka, A.J. Dinusha, Potdar, Vidyasagar, Dillon, T., Kuruppu, S., Rathnayaka, A.J. Dinusha, Potdar, Vidyasagar, Dillon, T., and Kuruppu, S.
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In the context of energy generation and distribution networks, the emergence of smart grids has enabled bidirectional energy as well as information flow between energy users and utility grids, transforming traditional energy consumers into economically motivated prosumers, who not just consume energy but also generate green energy, and share the surplus with the main utility grid. Several studies have been carried out to manage the prosumers, and the concept of Prosumer–Community Groups (PCG) has provided a promising approach to achieve that end. However, this concept is still in its infancy and the related aspects have not been comprehensively studied so far. Therefore, in this research paper, we address the formation of PCG. The proposed framework classifies the prosumers' energy–sharing behaviours, while detecting the outliers, and characterises PCG. Further, we also demonstrate the practical functionality of the proposed framework using a prosumer data set.
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- 2015
14. Goal-Oriented Prosumer Community Groups for the Smart Grid
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Rathnayaka, A.J. Dinusha, Potdar, Vidyasagar, Dillon, T., Hussain, Omar, Kuruppu, S., Rathnayaka, A.J. Dinusha, Potdar, Vidyasagar, Dillon, T., Hussain, Omar, and Kuruppu, S.
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Energy demand is continually rising, worldwide. Most of the current demand is met by non-renewable energy sources, like coal, petroleum, and natural gas. However, currently, society is faced with the problem of dwindling and scarce non-renewable energy resources, resulting in a shortage of energy. Moreover, the process of energy production from non-renewable sources is increasing greenhouse gas emissions, leading to unpleasant and potentially dangerous climatic changes. Therefore, in today's world, the focus is on inducing users to reduce their household energy consumption, and shift to using energy produced from renewable sources, such as solar, water, and wind. Not only this, but users are being encouraged to generate the green energy, and to either store the surplus for future usage or to feed it back into the utility grid. In order to evolve such bidirectional energy and information flow, the concept of the smart-grid has been proposed.
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- 2014
15. PO380 VALIDITY OF TG/HDL RATIO IN DIAGNOSING INSULIN RESISTANCE
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Wickramasinghe, V.P., primary, Arambepola, C., additional, Bandara, P., additional, Abeysekera, M., additional, Kuruppu, S., additional, Dilshan, P., additional, and Dissanayake, B.S., additional
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- 2014
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16. Prosumer recruitment framework for prosumer community groups in smart-grid
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Dinusha Rathnayaka, A., Potdar, Vidyasagar, Dillon, Tharam S., Hussain, Omar, Kuruppu, S., Dinusha Rathnayaka, A., Potdar, Vidyasagar, Dillon, Tharam S., Hussain, Omar, and Kuruppu, S.
- Abstract
Smart Grid (SG) achieves bidirectional energy and information flow between the energy-user and the utility grid, allowing conventional energy-users to become prosumers, who not only generate green energy, but also return the surplus energy back to the utility-grid. Managing these energy-sharing prosumers is a pivotal requisite in SG, and making goal-oriented prosumer community groups is an effective choice to accomplish that.However, developing sustainable prosumer community groups is challenging and one of the key challenges is recruiting dynamic prosumers to the community groups. In this research paper, we address this challenge by presenting an innovative framework for prosumer recruitment in prosumer community groups. The current literature has overlooked this challenge, making our work novel within the research field. The proposed prosumer recruitment framework suggests the use of iterative evaluation process to proactively monitor the quality of service delivered by registered prosumers before assigning them to the prosumer community groups. We demonstrate the functionality of the framework using energy behaviour dataset of 500 prosumers. Furthermore, we present performance benchmarks to validate the framework's ability to identify the dynamic prosumers within the dataset, and to assign the prosumers to the appropriate prosumer community groups. © 2013 CRL Publishing Ltd.
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- 2013
17. Analysis of Energy Behaviour Profiles of Prosumers
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IEEE, Potdar, Vidyasagar, Rathnayaka, A., Dillon, Tharam S., Hussain, Omar, Kuruppu, S., IEEE, Potdar, Vidyasagar, Rathnayaka, A., Dillon, Tharam S., Hussain, Omar, and Kuruppu, S.
- Abstract
Smart Grid (SG) achieves bidirectional energy and information flow between the energy user and the utility grid, allowing energy users not only to consume energy, but also to generate the energy and share the excess energy with the utility grid or with other energy consumers. This type of energy user iscalled the “prosumer”. In current society, a massive number of energy-users have transformed into prosumers due to many reasons such as the strong society attitude with respect toalleviation of negative climate impacts, desires to decrease electricity costs, and various government regulations, including generous feed-in tariff schemes. This leads much attention withinthe research community on investigating the aspects of prosumers connected to SG. However most researchers find it challenges to find a large dataset of prosumers for performing the experiments. This leads the necessity of identifying the generic prosumers’ realistic energy behaviors, and accordingly generates a synthetic dataset. In this research paper, we present prosumers’ realistic energy behavior profiles during summer and winter periods in Australia and present its application in generating a synthetic dataset. The new researchers can use the identified energy profiles as a benchmark to generate a synthetic dataset for their experiments.
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- 2012
18. An innovative approach to manage prosumers in smart grid
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Charles A Shoniregun, Paul Hofmann, Rathnayaka, Dinusha, Potdar, Vidyasagar, Kuruppu, S., Charles A Shoniregun, Paul Hofmann, Rathnayaka, Dinusha, Potdar, Vidyasagar, and Kuruppu, S.
- Abstract
Smart Grid (SG) achieves bidirectional energy and information flow between the energy user and the utility grid, allowing energy users not only to consume energy, but also to generate the energy and share with the utility grid or with other energy consumers. This type of energy user is called the "prosumer". The sustainability of the SG energy sharing process depends on its participating prosumers. Hence the prosumer management schemes are crucial within the energy sharing field. However, the existing literature on SG energy sharing has shown little attention on prosumer participation and management. The contribution of this paper is twofold. First we critically analyze the prosumer management schemes used by existing approaches and identify the open research issues. Second, we introduce a novel concept to manage the prosumers in the form of goal oriented virtual prosumer-communities and we discuss the aspects of prosumer-community formation, growth and overall management. The main significance of this approach is that the prosumer-communities facilitate the prosumers with similar interest to join together and increase the quantity of energy to be auctioned to the SG and accordingly increase the bargaining power in the energy market. In addition, the prosumer communities can attain more sustainable energy sharing process in long-term.
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- 2011
19. Energy resource management in smart home: state of the art and challenges ahead
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Nacer Kouider Msirdi, Aziz Naamane, Rathnayaka, Dinusha, Potdar, Vidyasagar, Kuruppu, S., Nacer Kouider Msirdi, Aziz Naamane, Rathnayaka, Dinusha, Potdar, Vidyasagar, and Kuruppu, S.
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Residential sector registers one of the highest energy consumers in the world; hence efficient Energy Resource Management (ERM) scheme has become essential in new home or renovation projects. Smart home concept is an appealing way to promote the ERM. According to the literature, diverse research efforts have been emerged to investigate the ERM in smart homes. However in order to succeed in future researches, it is imperative to realize the current position of the ERM in the smart home research field. A clear identification of gaps in existing literature would significantly benefit the new researchers to understand the challenges ahead. In this article, we critically discuss the state of the art and the open research issues of the ERM in smart home.
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- 2011
20. Evaluation of wireless home automation technologies
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Ju-Jang Lee, Marc Wilhelm Kuster, Rathnayaka, Dinusha, Potdar, Vidyasagar, Kuruppu, S., Ju-Jang Lee, Marc Wilhelm Kuster, Rathnayaka, Dinusha, Potdar, Vidyasagar, and Kuruppu, S.
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Introduction of Wireless Home Automation (WHA) has become a positive inspiration to the new home and renovation projects, as it increases the quality of life and comfort of the inhabitants, simultaneously facilitating energy conservation and environmental sustainability. Generally WHA networks comprise of wireless embedded sensors and actuators that intelligently interconnect with each other through a suitable wireless architecture. Many wireless technologies have been emerged recently targeting WHA, hence selecting the optimal technology is challenging. In this article, we present an evaluation of these emerging wireless technologies and discuss their suitability for smart home networks.
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- 2011
21. Evaluation of wireless home automation technologies for smart mining camps in remote western australia
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Nacer Kouider Msirdi, Aziz Naamane, Rathnayaka, Dinusha, Potdar, Vidyasagar, Kuruppu, S., Nacer Kouider Msirdi, Aziz Naamane, Rathnayaka, Dinusha, Potdar, Vidyasagar, and Kuruppu, S.
- Abstract
Remote Western Australian (WA) is featured with harsh environmental and living conditions, but extremely rich soil with large mineral deposits. Mining companies have invested immensely in those areas, and mining camps have been constructed with thousands of Single Person Quarter (SPQ) units to fulfill mining worker accommodation. Major challenge faced by SPQ suppliers is improving the quality of life of the workers, while minimizing the energy cost. In recent years, Wireless Home Automation (WHA) has become an ideal choice for SPQs to achieve these targets. In this paper we perform one of the initial steps of the feasibility study of integrating WHA to SPQs. Generally in a WHA network, wireless sensors and actuators intelligently interconnect with each other through a suitable WHA technology. This paper evaluates different WHA technologies to find out the most suitable technology to implement WHA specifically for SPQs based on the practical requirements outlined by our industry collaborator, who is an Australian mobile accommodation company, supplying smart SPQs to mining camps.
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- 2011
22. Functional and Structural Diversification of the Anguimorpha Lizard Venom System
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Fry, BG, Winter, K, Norman, JA, Roelants, K, Nabuurs, RJA, van Osch, MJP, Teeuwisse, WM, van der Weerd, L, Mcnaughtan, JE, Kwok, HF, Scheib, H, Greisman, L, Kochva, E, Miller, LJ, Gao, F, Karas, J, Scanlon, D, Lin, F, Kuruppu, S, Shaw, C, Wong, L, Hodgson, WC, Fry, BG, Winter, K, Norman, JA, Roelants, K, Nabuurs, RJA, van Osch, MJP, Teeuwisse, WM, van der Weerd, L, Mcnaughtan, JE, Kwok, HF, Scheib, H, Greisman, L, Kochva, E, Miller, LJ, Gao, F, Karas, J, Scanlon, D, Lin, F, Kuruppu, S, Shaw, C, Wong, L, and Hodgson, WC
- Abstract
Venom has only been recently discovered to be a basal trait of the Anguimorpha lizards. Consequently, very little is known about the timings of toxin recruitment events, venom protein molecular evolution, or even the relative physical diversifications of the venom system itself. A multidisciplinary approach was used to examine the evolution across the full taxonomical range of this ∼130 million-year-old clade. Analysis of cDNA libraries revealed complex venom transcriptomes. Most notably, three new cardioactive peptide toxin types were discovered (celestoxin, cholecystokinin, and YY peptides). The latter two represent additional examples of convergent use of genes in toxic arsenals, both having previously been documented as components of frog skin defensive chemical secretions. Two other novel venom gland-overexpressed modified versions of other protein frameworks were also recovered from the libraries (epididymal secretory protein and ribonuclease). Lectin, hyaluronidase, and veficolin toxin types were sequenced for the first time from lizard venoms and shown to be homologous to the snake venom forms. In contrast, phylogenetic analyses demonstrated that the lizard natriuretic peptide toxins were recruited independently of the form in snake venoms. The de novo evolution of helokinestatin peptide toxin encoding domains within the lizard venom natriuretic gene was revealed to be exclusive to the helodermatid/anguid subclade. New isoforms were sequenced for cysteine-rich secretory protein, kallikrein, and phospholipase A(2) toxins. Venom gland morphological analysis revealed extensive evolutionary tinkering. Anguid glands are characterized by thin capsules and mixed glands, serous at the bottom of the lobule and mucous toward the apex. Twice, independently this arrangement was segregated into specialized serous protein-secreting glands with thick capsules with the mucous lobules now distinct (Heloderma and the Lanthanotus/Varanus clade). The results obtained highlight
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- 2010
23. Wireless Sensor Networks: Challenges Ahead
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Leonard Barolli, Fatos Xhafa, Minoru Uehara, Ilsun You, Rathnayaka, Dinusha, Potdar, Vidyasagar, Sharif, Atif, Sarenche, S., Kuruppu, S., Leonard Barolli, Fatos Xhafa, Minoru Uehara, Ilsun You, Rathnayaka, Dinusha, Potdar, Vidyasagar, Sharif, Atif, Sarenche, S., and Kuruppu, S.
- Abstract
The aim of this paper is to analyze the different Wireless Sensor Network (WSN) transport protocols byidentifying various experimental parameters in order to undertake a comparative evaluation. To build the groundwork, we first discuss the generic design for a transport protocol based on three key concepts; congestion control, reliability support and priority support. The basis of this design was developed by assessing several aspects of numerous transport protocols. However they all using different set of parameters and settings and hence it is difficult to benchmark one against the other. In this paper, we discuss the simulation settings like packet size, number of exploited sensors and their distribution in the field, buffer size, coverage area and power levels.
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- 2010
24. Wireless Sensor Network Transport Protocol - A State of the Art
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Leonard Barolli, Fatos Xhafa, Minoru Uehara, Ilsun You, Rathnayaka, Dinusha, Potdar, Vidyasagar, Sharif, Atif, Sarenche, S., Kuruppu, S., Leonard Barolli, Fatos Xhafa, Minoru Uehara, Ilsun You, Rathnayaka, Dinusha, Potdar, Vidyasagar, Sharif, Atif, Sarenche, S., and Kuruppu, S.
- Abstract
In this article, we present a survey of Wireless Sensor Networks (WSNs) existing Transport Protocols. Wehave evaluated the design concepts of different protocols based on congestion control, reliability support and source traffic priority support. Then we draw the concluding remarks, while highlighting up-and-coming research challenges for WSN transport protocols, which should be addressed further in prospective designs.
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- 2010
25. Neurotoxins from Australo-Papuan elapids: A biochemical and pharmacological perspective
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Kuruppu, S, Smith, AI, Isbister, GK, Hodgson, WC, Kuruppu, S, Smith, AI, Isbister, GK, and Hodgson, WC
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Most of the medically important snakes in Papua New Guinea and Australia belong to the family Elapidae and are referred to as “Australo-Papuan” elapids. Neurotoxicity is often a life-threatening symptom of envenoming by these snakes; therefore, much attention has been paid to the isolation and detailed pharmacological and biochemical characterization of the presynaptic (β) and postsynaptic (agr) neurotoxins from these elapid venoms. These studies have highlighted the potential for these toxins to be used as highly potent and selective probes for biomedical research and, perhaps, the potential for their use as lead compounds for the development of pharmaceutical agents. Historically, the potency of neurotoxins/crude venoms has been determined using murine LD50 (lethal dose) assays. However, a different rank order of potency often results when crude venoms/toxins are ranked based on their in vitro pharmacological parameters (e.g., t90 values). The lack of neurotoxicity following envenoming by brown snakes, despite the presence of a potent neurotoxin in their venom, has puzzled clinical toxinologists for years. This paradox also appears to include envenoming by the Stephen's banded snake. Lastly, the in vitro studies examining the effectiveness of antivenoms as well as the potential for alternative compounds to reverse/prevent neurotoxicity are discussed. This review presents for the first time a detailed comparative analysis of the pharmacology and biochemistry of neurotoxins isolated from the Australo-Papuan elapids, placing emphasis on the time taken for onset of action, receptor binding parameters, reversibility, and the methods for determining potency.
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- 2008
26. Hardware — software hybrid open single phase diagnostic scheme for PMAC machines
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Kuruppu, S. S., primary and Kulatunga, N. Athula, additional
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- 2013
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27. Validity of newly-developed BMI and waist cut-off values for Sri Lankan children
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Wickramasinghe, V. P., primary, Arambepola, C., additional, Bandara, D. M. P. S., additional, Abeysekera, M., additional, Kuruppu, S., additional, Dilshan, P., additional, and Dissanayake, B. S., additional
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- 2013
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28. Distribution of obesity-related metabolic markers among 5–15 year old children from an urban area of Sri Lanka
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Wickramasinghe, V.P., primary, Arambepola, C., additional, Bandara, P., additional, Abeysekera, M., additional, Kuruppu, S., additional, Dilshan, P., additional, and Dissanayake, B.S., additional
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- 2013
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29. Phospholipase A2-dependent effects of the venom from the New Guinean small-eyed snake Micropechis ikaheka
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Kuruppu, S, Isbister, GK, Hodgson, WC, Kuruppu, S, Isbister, GK, and Hodgson, WC
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The New Guinean small-eyed snake (Micropechis ikaheka) is a cause of life-threatening envenoming. Previous studies on M. ikaheka venom have indicated the presence of neurotoxins as well as myotoxins. This study examined the in vitro myotoxic effects of M. ikaheka venom and the efficacy of a polyvalent antivenom in neutralizing these effects. Venom (50 g/ml) produced a slowly developing contracture and inhibition of direct twitches of the chick biventer cervicis nerve-muscle preparation in the presence of tubocurarine (10 M). Myotoxicity was confirmed by subsequent histological examination of tissues. This myotoxicity was prevented by the prior addition of polyvalent snake antivenom (30 U/ml). However, the addition of antivenom (30 U/ml) 1 h after venom administration failed to reverse or prevent the further inhibition of direct twitches. In addition, venom (1-10 g/ml) produced concentration-dependent contractions of the guinea-pig isolated ileum. These effects were dependent on phospholipase A2 (PLA2) activity of the venom as evidenced by the ability of the PLA2 inhibitor 4-bromophenacyl bromide (4-BPB; 1.8 mM) to prevent this activity. This study indicates that M. ikaheka venom causes significant myotoxicity and that polyvalent snake antivenom may be a potential treatment for the myotoxic effects in patients envenomed by this species.
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- 2005
30. Evidence that renal arginine transport is impaired in spontaneously hypertensive rats
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Rajapakse, N. W., primary, Kuruppu, S., additional, Hanchapola, I., additional, Venardos, K., additional, Mattson, D. L., additional, Smith, A. I., additional, Kaye, D. M., additional, and Evans, R. G., additional
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- 2012
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31. Iterative Dictionary Construction for Compression of Large DNA Data Sets
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Kuruppu, S., primary, Beresford-Smith, Bryan, additional, Conway, T., additional, and Zobel, J., additional
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- 2012
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32. SOLUBLE FORM OF ENDOTHELIN CONVERTING ENZYME-1 IN CEREBROSPINAL FLUID: A POTENTIAL BIOMARKER OF CEREBRAL VASOSPASM
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Kuruppu, S., primary, Chou, S., additional, Hanchapola, I., additional, Ning, M., additional, and Smith, A., additional
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- 2011
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33. Smart meter based tools to enhance feedback oriented DSM with time of use rates
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Kulatunga, N. Athula, primary, Loetscher, R., additional, and Kuruppu, S., additional
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- 2010
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34. Isolation and pharmacological characterisation of hostoxin-1, a postsynaptic neurotoxin from the venom of the Stephen's banded snake (Hoplocephalus stephensi)
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TAN, L, primary, KURUPPU, S, additional, SMITH, A, additional, REEVE, S, additional, and HODGSON, W, additional
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- 2006
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35. Wireless Sensor Networks: Challenges Ahead.
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Rathnayaka, A.J.D., Potdar, V.M., Sharif, A., Sarencheh, S., and Kuruppu, S.
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- 2010
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36. Wireless Sensor Network Transport Protocol - A State of the Art.
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Rathnayaka, A.J.D., Potdar, V.M., Sharif, A., Sarencheh, S., and Kuruppu, S.
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- 2010
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37. Evidence that renal arginine transport is impaired in spontaneously hypertensive rats.
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Rajapakse, N. W., Kuruppu, S., Hanchapola, I., Venardos, K., Mattson, D. L., Smith, A. I., Kaye, D. M., and Evans, R. G.
- Abstract
Low renal nitric oxide (NO) bioavailability contributes to the development and maintenance of chronic hypertension. We investigated whether impaired L-arginine transport contributes to low renal NO bioavailability in hypertension. Responses of renal medullary perfusion and NO concentration to renal arterial infusions of the L-arginine transport inhibitor L-lysine (10 μmol.kg-1.min-1; 30 min) and subsequent superimposition of L-arginine (100 μmol.kg-1.min-1; 30 min), the NO synthase inhibitor NG-nitro-L-arginine (2.4 mg/kg; iv bolus), and the NO donor sodium nitroprusside (0.24 μg.kg-1.min-1) were examined in Sprague-Dawley rats (SD) and spontaneously hypertensive rats (SHR). Renal medullary perfusion and NO concentration were measured by laser-Doppler flowmetry and polarographically, respectively, 5.5 mm below the kidney surface. Renal medullary NO concentration was less in SHR (53 ± 3 nM) compared with SD rats (108 ± 12 nM; P = 0.004). L-Lysine tended to reduce medullary perfusion (-15 ± 7%; P = 0.07) and reduced medullary NO concentration (-9 ± 3%; P = 0.03) while subsequent superimposition of L-arginine reversed these effects of L-lysine in SD rats. In SHR, L-lysine and subsequent superimposition of L-arginine did not significantly alter medullary perfusion or NO concentration. Collectively, these data suggest that renal L-arginine transport is impaired in SHR. Renal L-[3H]arginine transport was less in SHR compared with SD rats (P = 0.01). Accordingly, we conclude that impaired arginine transport contributes to low renal NO bioavailability observed in the SHR kidney. [ABSTRACT FROM AUTHOR]
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- 2012
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38. Prosumer recruitment framework for prosumer community groups in smart-grid
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Dinusha Rathnayaka, A. J., Potdar, V. M., Dillon, T., Omar Hussain, and Kuruppu, S.
39. Metal- versus ligand-centered reactivity of a cobalt-phenylenediamide complex with electrophiles.
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Zou M, Kuruppu S, Emge TJ, and Waldie KM
- Abstract
A new series of [Co
III -CF3 ]n + complexes supported by a bidentate redox-active ligand is presented. The cationic [Co-CF3 ]+ complex was first obtained by reacting [CpCo(t BuUrea opda)] (Cp = cyclopentadienyl, opda = o -phenylenediamide) with an electrophilic trifluoromethyl source, for which the redox-active phenylenediamide ligand serves as a 2e- reservoir to generate [CpCp(t BuUrea bqdi)(CF3 )]+ (bqdi = benzoquinonediimine). Electrochemical studies of [Co-CF3 ]+ revealed two reversible 1e- reductions. Chemical reduction with 1 or 2 equiv. reducing agent enabled isolation of the neutral and anionic complexes, respectively, where the [CoIII -CF3 ] bond remains intact in all three oxidation states ( n = +1, 0, -1). Structural analysis shows systematic changes to the redox-active ligand backbone upon reduction, consistent with sequential ligand-centered electron transfer in the series [bqdi]0 to [s-bqdi]˙- to [opda]2- . In contrast, the reaction of [CpCo(t BuUrea opda)] with alkyl triflates resulted in ligand-centered alkylation at the ureayl groups instead of the targeted Co-alkyl bond formation, suggesting less favorable bond formation at cobalt and greater nucleophilic accessibility of the ligand compared to the metal center.- Published
- 2024
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40. Feasibility and usability of remote monitoring in Alzheimer's disease.
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Muurling M, de Boer C, Hinds C, Atreya A, Doherty A, Alepopoulos V, Curcic J, Brem AK, Conde P, Kuruppu S, Morató X, Saletti V, Galluzzi S, Vilarino Luis E, Cardoso S, Stukelj T, Kramberger MG, Roik D, Koychev I, Hopøy AC, Schwertner E, Gkioka M, Aarsland D, and Visser PJ
- Abstract
Introduction: Remote monitoring technologies (RMTs) can measure cognitive and functional decline objectively at-home, and offer opportunities to measure passively and continuously, possibly improving sensitivity and reducing participant burden in clinical trials. However, there is skepticism that age and cognitive or functional impairment may render participants unable or unwilling to comply with complex RMT protocols. We therefore assessed the feasibility and usability of a complex RMT protocol in all syndromic stages of Alzheimer's disease and in healthy control participants., Methods: For 8 weeks, participants (N = 229) used two activity trackers, two interactive apps with either daily or weekly cognitive tasks, and optionally a wearable camera. A subset of participants participated in a 4-week sub-study (N = 45) using fixed at-home sensors, a wearable EEG sleep headband and a driving performance device. Feasibility was assessed by evaluating compliance and drop-out rates. Usability was assessed by problem rates (e.g., understanding instructions, discomfort, forgetting to use the RMT or technical problems) as discussed during bi-weekly semi-structured interviews., Results: Most problems were found for the active apps and EEG sleep headband. Problem rates increased and compliance rates decreased with disease severity, but the study remained feasible., Conclusions: This study shows that a highly complex RMT protocol is feasible, even in a mild-to-moderate AD population, encouraging other researchers to use RMTs in their study designs. We recommend evaluating the design of individual devices carefully before finalizing study protocols, considering RMTs which allow for real-time compliance monitoring, and engaging the partners of study participants in the research., Competing Interests: JC is an employee and shareholder of Novartis. AD is supported by the Welcome Trust [223100/Z/21/Z]. Research of Alzheimer center Amsterdam is part of the neurodegeneration research program of Amsterdam Neuroscience. Alzheimer Center Amsterdam is supported by Stichting Alzheimer Nederland and Stichting Steun Alzheimercentrum Amsterdam. DA has received research support and/or honoraria from Astra-Zeneca, H. Lundbeck, Novartis Pharmaceuticals, Biogen, and GE Health, and served as paid consultant for H. Lundbeck, Eisai, Heptares, Mentis Cura, and Roche Diagnostics. IK declares support for this work through the National Institute of Health Research (personal award and Oxford Health Biomedical Research Centre) and the Medical Research Council (Dementias Platform UK grant), and is a paid medical advisor for digital healthcare technology companies (Five Lives SAS and Cognetivity Ltd). All other authors declare that there is no conflict of interest., (© The Author(s) 2024.)
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- 2024
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41. Electromechanical Response of Mesenteric Ischemia Defined Through Simultaneous High-Resolution Bioelectrical and Video Mapping.
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Kuruppu S, Cheng LK, Angeli-Gordon TR, Avci R, and Paskaranandavadivel N
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- Animals, Swine, Intestines, Gastrointestinal Motility physiology, Ischemia, Muscle Contraction, Mesenteric Ischemia
- Abstract
Intestinal motility is governed in part by bioelectrical slow-waves and spike-bursts. Mesenteric ischemia is a substantial clinical challenge, but its electrophysiological and contractile mechanisms are not well understood. Simultaneous high-resolution bioelectrical and video mapping techniques were used to capture the changes in slow-waves, spike-bursts, and contractile activity during baseline, ischemia, and reperfusion periods. Experiments were performed on anesthetized pigs where intestinal contractions were quantified using surface strain and diameter measurements, while slow-wave and spike-bursts were quantified using frequency and amplitude. Slow-waves entrainment within the ischemic region diminished during ischemia, resulting in irregular slow-wave activity and a reduction in the frequency from 12.4 ± 3.0 cycles-per-minute (cpm) to 2.5 ± 2.7 cpm (p = 0.0006). At the end of the reperfusion period, normal slow-wave entrainment was observed at a frequency of 11.5 ± 2.9 cpm. There was an increase in spike-burst activity between the baseline and ischemia periods (1.1 ± 1.4 cpm to 8.7 ± 3.3 cpm, p = 0.0003) along with a spasm of circumferential contractions. At the end of the reperfusion period, the frequency of spike-bursts decreased to 2.7 ± 1.4 cpm, and contractions subsided. The intestine underwent tonal contraction during ischemia, with the diameter decreasing from 29.3 ± 2.6 mm to 21.2 ± 6.2 mm (p = 0.0020). At the end of the reperfusion period, the intestinal diameter increased to 27.3 ± 3.9 mm. The decrease in slow-wave activity, increase in spike-bursts, and tonal contractions can objectively identify ischemic segments in the intestine. It is anticipated that the use of electrophysiological slow-wave and spike-burst biomarkers, along with contractile measures, could identify mesenteric ischemia in surgical settings and allow an objective biomarker for successful revascularization., (© 2023. The Author(s) under exclusive licence to Biomedical Engineering Society.)
- Published
- 2024
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42. Correction: Ethical challenges of using remote monitoring technologies for clinical research: A case study of the role of local research ethics committees in the RADAR-AD study.
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Muurling M, Pasmooij AMG, Koychev I, Roik D, Froelich L, Schwertner E, Religa D, Abdelnour C, Boada M, Almici M, Galluzzi S, Cardoso S, de Mendonça A, Owens AP, Kuruppu S, Gjestsen MT, Lazarou I, Gkioka M, Tsolaki M, Diaz A, Gove D, Visser PJ, Aarsland D, Lucivero F, and de Boer C
- Abstract
[This corrects the article DOI: 10.1371/journal.pone.0285807.]., (Copyright: © 2023 Muurling et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2023
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43. Ethical challenges of using remote monitoring technologies for clinical research: A case study of the role of local research ethics committees in the RADAR-AD study.
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Muurling M, Pasmooij AMG, Koychev I, Roik D, Froelich L, Schwertner E, Religa D, Abdelnour C, Boada M, Almici M, Galluzzi S, Cardoso S, de Mendonça A, Owens AP, Kuruppu S, Gjestsen MT, Lazarou I, Gkioka M, Tsolaki M, Diaz A, Gove D, Visser PJ, Aarsland D, Lucivero F, and de Boer C
- Subjects
- Humans, Ethical Review, Ethics, Research, Europe, Ethics Committees, Research, Alzheimer Disease
- Abstract
Introduction: Clinical research with remote monitoring technologies (RMTs) has multiple advantages over standard paper-pencil tests, but also raises several ethical concerns. While several studies have addressed the issue of governance of big data in clinical research from the legal or ethical perspectives, the viewpoint of local research ethics committee (REC) members is underrepresented in the current literature. The aim of this study is therefore to find which specific ethical challenges are raised by RECs in the context of a large European study on remote monitoring in all syndromic stages of Alzheimer's disease, and what gaps remain., Methods: Documents describing the REC review process at 10 sites in 9 European countries from the project Remote Assessment of Disease and Relapse-Alzheimer's Disease (RADAR-AD) were collected and translated. Main themes emerging in the documents were identified using a qualitative analysis approach., Results: Four main themes emerged after analysis: data management, participant's wellbeing, methodological issues, and the issue of defining the regulatory category of RMTs. Review processes differed across sites: process duration varied from 71 to 423 days, some RECs did not raise any issues, whereas others raised up to 35 concerns, and the approval of a data protection officer was needed in half of the sites., Discussion: The differences in the ethics review process of the same study protocol across different local settings suggest that a multi-site study would benefit from a harmonization in research ethics governance processes. More specifically, some best practices could be included in ethical reviews across institutional and national contexts, such as the opinion of an institutional data protection officer, patient advisory board reviews of the protocol and plans for how ethical reflection is embedded within the study., Competing Interests: The authors have read the journal’s policy and have the following competing interests: IK is a paid medical advisor for digital healthcare technology companies Five Lives SAS and Cognetivity Ltd., outside the submitted work. CA has received honoraria as speaker from F. Hoffmann-La Roche Ltd, Zambon, Nutricia, Schwabe Farma Ibérica S.A.U, outside of the submitted work. CA is a member of the Board of Directors of the Lewy Body Dementia Association, outside the submitted work. DA has received research support and/or honoraria from Astra-Zeneca, H. Lundbeck, Novartis Pharmaceuticals, Biogen, and GE Health, and served as paid consultant for H. Lundbeck, Eisai, Heptares, Mentis Cura, and Roche Diagnostics, outside the submitted work. MB is an employee of the Ace Alzheimer Center and an advisory board member for Grifols, Roche, Eli Lilly, Araclon Biotech, Merck, Zambon, Biogen, Novo Nordisk, Bioiberica, Eisai, Servier, and Schwabe Pharma, outside the submitted work. This does not alter our adherence to PLOS ONE policies on sharing data and materials. All other authors have declared that no competing interests exist. There are no patents, products in development or marketed products associated with this research to declare., (Copyright: © 2023 Muurling et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2023
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44. Digital endpoints in clinical trials of Alzheimer's disease and other neurodegenerative diseases: challenges and opportunities.
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Brem AK, Kuruppu S, de Boer C, Muurling M, Diaz-Ponce A, Gove D, Curcic J, Pilotto A, Ng WF, Cummins N, Malzbender K, Nies VJM, Erdemli G, Graeber J, Narayan VA, Rochester L, Maetzler W, and Aarsland D
- Abstract
Alzheimer's disease (AD) and other neurodegenerative diseases such as Parkinson's disease (PD) and Huntington's disease (HD) are associated with progressive cognitive, motor, affective and consequently functional decline considerably affecting Activities of Daily Living (ADL) and quality of life. Standard assessments, such as questionnaires and interviews, cognitive testing, and mobility assessments, lack sensitivity, especially in early stages of neurodegenerative diseases and in the disease progression, and have therefore a limited utility as outcome measurements in clinical trials. Major advances in the last decade in digital technologies have opened a window of opportunity to introduce digital endpoints into clinical trials that can reform the assessment and tracking of neurodegenerative symptoms. The Innovative Health Initiative (IMI)-funded projects RADAR-AD ( Remote assessment of disease and relapse-Alzheimer's disease ), IDEA-FAST ( Identifying digital endpoints to assess fatigue, sleep and ADL in neurodegenerative disorders and immune-mediated inflammatory diseases ) and Mobilise-D ( Connecting digital mobility assessment to clinical outcomes for regulatory and clinical endorsement ) aim to identify digital endpoints relevant for neurodegenerative diseases that provide reliable, objective, and sensitive evaluation of disability and health-related quality of life. In this article, we will draw from the findings and experiences of the different IMI projects in discussing (1) the value of remote technologies to assess neurodegenerative diseases; (2) feasibility, acceptability and usability of digital assessments; (3) challenges related to the use of digital tools; (4) public involvement and the implementation of patient advisory boards; (5) regulatory learnings; and (6) the significance of inter-project exchange and data- and algorithm-sharing., Competing Interests: AP received grant support from Ministry of Health (MINSAL) and Ministry of Education, Research and University (MIUR), from Airalzh Foundation, LIMPE-DSIMOV society and MI H2020 initiative (MI2-2018-15-06); he received speaker honoraria from Abbvie, Bial, Biomarin, Roche and Zambon Pharmaceuticals. W-FN has consulted for Novartis, GlaxoSmithKline, Abbvie, BMS, Sanofi, MedImmune, Janssen, Resolve Therapeutics and UCB. LR receives consultancy from MJ Fox Foundation and grant support from the EU, NIHR, MRC, PDUK, Dunhill Medical Trust, Cure Parkinson’s Trust, EPSRC, MJ Fox Foundation. DA has received research support and/or honoraria from Astra-Zeneca, H. Lundbeck, Novartis Pharmaceuticals, Evonik, Roche Diagnostics, and GE Health, and served as paid consultant for H. Lundbeck, Eisai, Heptares, Mentis Cura, Eli Lilly, Cognetivity, Enterin, Acadia, EIP Pharma, and Biogen. JC was employed by Novartis Institutes for Biomedical Research (NIBR), Basel, Switzerland and GE was employed by Novartis Pharmaceuticals Corporations, Cambridge, MA, United States. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Brem, Kuruppu, de Boer, Muurling, Diaz-Ponce, Gove, Curcic, Pilotto, Ng, Cummins, Malzbender, Nies, Erdemli, Graeber, Narayan, Rochester, Maetzler, Aarsland and on behalf of the RADAR-AD Consortium.)
- Published
- 2023
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45. Editorial: The inaugural Monash international health science and technology conference: pharmacology perspectives.
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Khaw KY, Whittaker MR, Kuruppu S, Chan KG, Gan SH, and Goh BH
- Abstract
Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
- Published
- 2023
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46. Development of a novel angiotensin converting enzyme 2 stimulator with broad implications in SARS-CoV2 and type 1 diabetes.
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Rajapakse N, Nomura H, Wu M, Song J, Hung A, Tran S, Ta H, Akther F, Wu Y, Johansen M, Chew K, Kumar V, Woodruff T, Clark R, Koehbach J, Lomonte B, Rosado C, Thomas M, Boudes M, Reboul C, Rash L, Gallo L, Essid S, Elmlund D, Miemczyk S, Hansbro N, Saunders B, Britton W, Sly P, Yamamoto A, Fernandez J, Moyle P, Short K, Hansbro P, Kuruppu S, and Smith I
- Abstract
Angiotensin-converting enzyme 2 (ACE2) is protective in cardiovascular disease, lung injury and diabetes yet paradoxically underlies our susceptibility to SARs-CoV2 infection and the fatal heart and lung disease it can induce. Furthermore, diabetic patients have chronic, systemic inflammation and altered ACE2 expression resulting in increased risk of severe COVID-19 and the associated mortality. A drug that could increase ACE2 activity and inhibit cellular uptake of severe acute respiratory syndrome coronavirus 2 (SARs-CoV2), thus decrease infection, would be of high relevance to cardiovascular disease, diabetes and SARs-CoV2 infection. While the need for such a drug lead was highlighted over a decade ago receiving over 600 citations,
1 to date, no such drugs are available.2 Here, we report the development of a novel ACE2 stimulator, designated '2A'(international PCT filed), which is a 10 amino acid peptide derived from a snake venom, and demonstrate its in vitro and in vivo efficacy against SARs-CoV2 infection and associated lung inflammation. Peptide 2A also provides remarkable protection against glycaemic dysregulation, weight loss and disease severity in a mouse model of type 1 diabetes. No untoward effects of 2A were observed in these pre-clinical models suggesting its strong clinical translation potential., Competing Interests: Competing interests: Authors declare that they have no competing interests.- Published
- 2023
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47. Broadened assessments, health education and cognitive aids in the remote memory clinic.
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Owens AP, Krebs C, Kuruppu S, Brem AK, Kowatsch T, Aarsland D, and Klöppel S
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- Humans, Cognition physiology, Memory, Long-Term, Health Education, Cognitive Dysfunction therapy, Cognitive Dysfunction psychology, Dementia therapy
- Abstract
The prevalence of dementia is increasing and poses a health challenge for individuals and society. Despite the desire to know their risks and the importance of initiating early therapeutic options, large parts of the population do not get access to memory clinic-based assessments. Remote memory clinics facilitate low-level access to cognitive assessments by eschewing the need for face-to-face meetings. At the same time, patients with detected impairment or increased risk can receive non-pharmacological treatment remotely. Sensor technology can evaluate the efficiency of this remote treatment and identify cognitive decline. With remote and (partly) automatized technology the process of cognitive decline can be monitored but more importantly also modified by guiding early interventions and a dementia preventative lifestyle. We highlight how sensor technology aids the expansion of assessments beyond cognition and to other domains, e.g., depression. We also illustrate applications for aiding remote treatment and describe how remote tools can facilitate health education which is the cornerstone for long-lasting lifestyle changes. Tools such as transcranial electric stimulation or sleep-based interventions have currently mostly been used in a face-to-face context but have the potential of remote deployment-a step already taken with memory training apps. Many of the presented methods are readily scalable and of low costs and there is a range of target populations, from the worried well to late-stage dementia., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Owens, Krebs, Kuruppu, Brem, Kowatsch, Aarsland and Klöppel.)
- Published
- 2022
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48. Relationship Between Intestinal Slow-waves, Spike-bursts, and Motility, as Defined Through High-resolution Electrical and Video Mapping.
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Kuruppu S, Cheng LK, Avci R, Angeli-Gordon TR, and Paskaranandavadivel N
- Abstract
Background/aims: High-resolution extracellular mapping has improved our understanding of bioelectric slow-wave and spike-burst activity in the small intestine. The spatiotemporal correlation of electrophysiology and motility patterns is of critical interest to intestinal function but remains incompletely defined., Methods: Intestinal jejunum segments from in vivo pigs and rabbits were exteriorized, and simultaneous high-resolution extracellular recordings and video recordings were performed. Contractions were quantified with strain fields, and the frequencies and velocities of motility patterns were calculated. The amplitudes, frequencies, and velocities of slow-wave propagation patterns and spike-bursts were quantified and visualized. In addition, the duration, size and energy of spike-burst patches were quantified., Results: Slow-wave associated spike-bursts activated periodically at 10.8 ± 4.0 cycles per minute (cpm) in pigs and 10.2 ± 3.2 cpm in rabbits, while independent spike-bursts activated at a frequency of 3.2 ± 1.8 cpm. Independent spike-bursts had higher amplitude and longer duration than slow-wave associated spike-bursts (1.4 ± 0.8 mV vs 0.1 ± 0.1 mV, P < 0.001; 1.8 ± 1.4 seconds vs 0.8 ± 0.3 seconds, P < 0.001 in pigs). Spike-bursts that activated as longitudinal or circumferential patches were associated with contractions in the respective directions. Spontaneous peristaltic contractions were elicited by independent spike-bursts and travelled slower than slow-wave velocity (3.7 ± 0.5 mm/sec vs 10.1 ± 4.7 mm/sec, P = 0.007). Cyclic peristaltic contractions were driven by slow-wave associated spike-bursts and were coupled to slow-wave velocity and frequency in rabbit (14.2 ± 2.3 mm/sec vs 11.5 ± 4.6 mm/sec, P = 0.162; 11.0 ± 0.6 cpm vs 10.8 ± 0.6 cpm, P = 0.970)., Conclusions: Motility patterns were dictated by patterns of spike-burst patches. When spike-bursts were coupled to slow-waves, periodic motility patterns were observed, while when spike-bursts were not coupled to slow-waves, spontaneous aperiodic motility patterns were captured.
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- 2022
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49. High-Resolution Spatiotemporal Quantification of Intestinal Motility With Free-Form Deformation.
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Kuruppu S, Cheng LK, Nielsen PMF, Gamage TPB, Avci R, Angeli TR, and Paskaranandavadivel N
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- Algorithms, Animals, Jejunum physiology, Rabbits, Swine, Urinary Bladder, Gastrointestinal Motility physiology, Muscle Contraction physiology
- Abstract
Objective: To develop a method to quantify strain fields from in vivo intestinal motility recordings that mitigate accumulation of tracking error., Methods: The deforming geometry of the intestine in video sequences was modeled by a biquadratic B-spline mesh. Green-Lagrange strain fields were computed to quantify the surface deformations. A nonlinear optimization scheme was applied to mitigate the accumulation of tracking error associated with image registration., Results: The optimization scheme maintained the RMS strain error under 1% and reduced the rate of strain error by 97% during synthetic tests. The algorithm was applied to map 64 segmental, 12 longitudinal, and 23 propagating circular contractions in the jejunum. Coordinated activity of the two muscle layers could be identified and the strain fields were able to map and quantify the anisotropic contractions of the intestine. Frequency and velocity were also quantified, from which two types of propagating circular contractions were identified: (i) [Formula: see text] strain contractions that originated spontaneously and propagated at [Formula: see text] mm/s in two pigs, and (ii) cyclic propagating contractions of [Formula: see text] strain occurred at [Formula: see text] cpm and propagated at [Formula: see text] mm/s in a rabbit., Conclusion: The algorithm simultaneously mapped the circular, longitudinal activity of the intestine with high spatial resolution and quantified anisotropic contractions and relaxations., Significance: The proposed algorithm can now be used to define the interactions of muscle layers during motility patterns. It can be integrated with high-resolution bioelectrical recordings to investigate the regulatory mechanisms of motility.
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- 2022
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50. SPARClink: an interactive tool to visualize the impact of the SPARC program.
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Soundarajan S, Kuruppu S, Singh A, Kim J, and Achalla M
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- Databases, Factual, Software, Data Curation
- Abstract
The National Institutes of Health (NIH) Stimulating Peripheral Activity to Relieve Conditions (SPARC) program seeks to accelerate the development of therapeutic devices that modulate electrical activity in nerves to improve organ function. SPARC-funded researchers are generating rich datasets from neuromodulation research that are curated and shared according to FAIR (Findable, Accessible, Interoperable, and Reusable) guidelines and are accessible to the public on the SPARC data portal. Keeping track of the utilization of these datasets within the larger research community is a feature that will benefit data-generating researchers in showcasing the impact of their SPARC outcomes. This will also allow the SPARC program to display the impact of the FAIR data curation and sharing practices that have been implemented. This manuscript provides the methods and outcomes of SPARClink, our web tool for visualizing the impact of SPARC, which won the Second prize at the 2021 SPARC FAIR Codeathon. With SPARClink, we built a system that automatically and continuously finds new published SPARC scientific outputs (datasets, publications, protocols) and the external resources referring to them. SPARC datasets and protocols are queried using publicly accessible REST application programming interfaces (APIs, provided by Pennsieve and Protocols.io) and stored in a publicly accessible database. Citation information for these resources is retrieved using the NIH reporter API and National Center for Biotechnology Information (NCBI) Entrez system. A novel knowledge graph-based structure was created to visualize the results of these queries and showcase the impact that the FAIR data principles can have on the research landscape when they are adopted by a consortium., Competing Interests: Competing interests: NIH SPARC is the primary funder for the publication of this research article., (Copyright: © 2022 Soundarajan S et al.)
- Published
- 2022
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