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Summary Accurate measurement of clonal genotypes, mutational processes, and replication states from individual tumor-cell genomes will facilitate improved understanding of tumor evolution. We have developed DLP+, a scalable single-cell whole-genome sequencing platform implemented using commodity instruments, image-based object recognition, and open source computational methods. Using DLP+, we have generated a resource of 51,926 single-cell genomes and matched cell images from diverse cell types including cell lines, xenografts, and diagnostic samples with limited material. From this resource we have defined variation in mitotic mis-segregation rates across tissue types and genotypes. Analysis of matched genomic and image measurements revealed correlations between cellular morphology and genome ploidy states. Aggregation of cells sharing copy number profiles allowed for calculation of single-nucleotide resolution clonal genotypes and inference of clonal phylogenies and avoided the limitations of bulk deconvolution. Finally, joint analysis over the above features defined clone-specific chromosomal aneuploidy in polyclonal populations., Graphical Abstract, Highlights • Scaled method and resource of > 50K single-cell whole genomes from diverse cell types • Clonal merging can resolve clone specific mutations to single-nucleotide level • Image analysis of single cells permits correlation of morphology and genome features • Clonal replication states and rare aneuploidy patterns of single cells measured, A high-throughput method for amplication-free single-cell whole-genome sequencing can be scaled up to analyze tens of thousands of cells from different tissues and clinical sample types and identifies replication states, aneuploidies, and subclonal mutations.

Context. Chemically inhomogeneous populations are observed in most globular clusters, but not in open clusters. Cluster mass seems to play a key role in the existence of multiple populations. Aims. Studying the chemical homogeneity of the most massive open clusters is needed to better understand the mechanism of their formation and determine the mass limit under which clusters cannot host multiple populations. Here we studied NGC≠6705, which is a young and massive open cluster located towards the inner region of the Milky Way. This cluster is located inside the solar circle. This makes it an important tracer of the inner disk abundance gradient. Methods. This study makes use of BVI and ri photometry and comparisons with theoretical isochrones to derive the age of NGC≠6705. We study the density profile of the cluster and the mass function to infer the cluster mass. Based on abundances of the chemical elements distributed in the first internal data release of the Gaia-ESO Survey, we study elemental ratios and the chemical homogeneity of the red clump stars. Radial velocities enable us to study the rotation and internal kinematics of the cluster. Results. The estimated ages range from 250 to 316≠Myr, depending on the adopted stellar model. Luminosity profiles and mass functions show strong signs of mass segregation. We derive the mass of the cluster from its luminosity function and from the kinematics, finding values between 3700 M and 11 000 M. After selecting the cluster members from their radial velocities, we obtain a metallicity of [Fe/H] = 0.10 ± 0.06 based on 21 candidate members. Moreover, NGC 6705 shows no sign of the typical correlations or anti-correlations between Al, Mg, Si, and Na, which are expected in multiple populations. This is consistent with our cluster mass estimate, which is lower than the required mass limit proposed in the literature to develop multiple populations.

Recently we reported the very first detection of γ -ray resonant absorption along the line of sight toward γ -ray bright quasars (QSOs) like 3C 273, 3C 279, PKS 0528+0134, and BL Lacertae. These detections resulted from the analysis of absorption troughs in SEDs derived on the base of mostly EGRET data that were collected during monitoring campaigns of the Virgo and galactic anticenter regions by the Compton Gamma Ray Observatory (CGRO), as well as during ToO observations of QSOs flares. Among three resonant absorption mechanisms that affect the γ -ray spectrum of point-like sources, we now pinpoint the Δ -isobar resonance that has a very stable peak energy of the absorption cross-section for all elements (nuclei) and for individual nucleons. From two absorbers that are usually detected on the sight lines towards γ -ray bright QSOs, we concentrate here on the only one that is at the QSO rest frame. We discuss the advantages and drawbacks of this method distinguishing between a galactic and extragalactic origin of the EGRET unidentified sources (EUIDs). This is compared to the multiwavelength identification approach that was succesfully used in a few cases to identify galactic and extragalactic objects among EUIDs. We applied the GRAM to identifying two of the EGRET unidentified sources as blazars, and predict their respective redshifts.

We report the discovery of a narrow stellar stream crossing the constellations of Sculptor and Fornax in the Southern celestial hemisphere. The portion of the stream detected in the Data Release 1 photometry of the ATLAS survey is at least 12 degrees long, while its width is $\approx$ 0.25 deg. The Color Magnitude Diagram of this halo sub-structure is consistent with a metal-poor [Fe/H] $\lesssim -1.4$ stellar population located at a heliocentric distance of 20 $\pm$ 2 kpc. There are three globular clusters that could tentatively be associated with the stream: NGC 7006, NGC 7078 (M15) and Pyxis, but NGC 7006 and 7078 seem to have proper motions incompatible with the stream orbit., 5 pages, 3 figures, accepted to MNRAS letters

We present the combination of optical data from the Science Verification phase of the Dark Energy Survey (DES) with near infrared data from the ESO VISTA Hemisphere Survey (VHS). The deep optical detections from DES are used to extract fluxes and associated errors from the shallower VHS data. Joint 7-band ($grizYJK$) photometric catalogues are produced in a single 3 sq-deg DECam field centred at 02h26m$-$04d36m where the availability of ancillary multi-wavelength photometry and spectroscopy allows us to test the data quality. Dual photometry increases the number of DES galaxies with measured VHS fluxes by a factor of $\sim$4.5 relative to a simple catalogue level matching and results in a $\sim$1.5 mag increase in the 80\% completeness limit of the NIR data. Almost 70\% of DES sources have useful NIR flux measurements in this initial catalogue. Photometric redshifts are estimated for a subset of galaxies with spectroscopic redshifts and initial results, although currently limited by small number statistics, indicate that the VHS data can help reduce the photometric redshift scatter at both $z1$. We present example DES+VHS colour selection criteria for high redshift Luminous Red Galaxies (LRGs) at $z\sim0.7$ as well as luminous quasars. Using spectroscopic observations in this field we show that the additional VHS fluxes enable a cleaner selection of both populations with $, Comment: 18 pages, 11 figures, Accepted for publication in MNRAS

Context. Chemically inhomogeneous populations are observed in most globular clusters, but not in open clusters. Cluster mass seems to play a key role in the existence of multiple populations. Aims. Studying the chemical homogeneity of the most massive open clusters is needed to better understand the mechanism of their formation and determine the mass limit under which clusters cannot host multiple populations. Here we studied NGC≠6705, which is a young and massive open cluster located towards the inner region of the Milky Way. This cluster is located inside the solar circle. This makes it an important tracer of the inner disk abundance gradient. Methods. This study makes use of BVI and ri photometry and comparisons with theoretical isochrones to derive the age of NGC≠6705. We study the density profile of the cluster and the mass function to infer the cluster mass. Based on abundances of the chemical elements distributed in the first internal data release of the Gaia-ESO Survey, we study elemental ratios and the chemical homogeneity of the red clump stars. Radial velocities enable us to study the rotation and internal kinematics of the cluster. Results. The estimated ages range from 250 to 316≠Myr, depending on the adopted stellar model. Luminosity profiles and mass functions show strong signs of mass segregation. We derive the mass of the cluster from its luminosity function and from the kinematics, finding values between 3700 M and 11 000 M. After selecting the cluster members from their radial velocities, we obtain a metallicity of [Fe/H] = 0.10 ± 0.06 based on 21 candidate members. Moreover, NGC 6705 shows no sign of the typical correlations or anti-correlations between Al, Mg, Si, and Na, which are expected in multiple populations. This is consistent with our cluster mass estimate, which is lower than the required mass limit proposed in the literature to develop multiple populations. © 2014 ESO .

Aims. We present a framework to obtain photometric redshifts (photo-zs) for gamma-ray burst afterglows. Using multi-band photometry from GROND and Swift/UVOT, photo-zs are derived for five GRBs for which spectroscopic redshifts are not available. Methods. We use UV/optical/NIR data and synthetic photometry based on afterglow observations and theory to derive the photometric redshifts of GRBs and their accuracy. Taking into account the afterglow synchrotron emission properties, we investigate the application of photometry to derive redshifts in a theoretical range between z ~ 1 to z ~ 12. Results. The measurement of photo-zs for GRB afterglows provides a quick, robust and reliable determination of the distance scale to the burst, particularly in those cases where spectroscopic observations in the optical/NIR range cannot be obtained. Given a sufficiently bright and mildly reddened afterglow, the relative photo-z accuracy η = Δz/(1 + z) is better than 10% between z = 1.5 and z ~ 7 and better than 5% between z = 2 and z = 6. We detail the approach on 5 sources without spectroscopic redshifts observed with UVOT on-board Swift and/or GROND. The distance scale to those same afterglows is measured to be z = 4.31 +0.14-0.15 for GRB 080825B, z = 2.13+0.14-0.20 for GRB 080906, z = 3.44+0.15-0.32 for GRB 081228, z = 2.03+0.16-0.14 for GRB 081230 and z = 1.28+0.16-0.15 for GRB 090530. Conclusions. Due to the exceptional luminosity and simple continuum spectrum of GRB afterglows, photometric redshifts can be obtained to an accuracy as good as η ~ 0.03 over a large redshift range including robust (η ~ 0.1) measurements in the ultra-high redshift regime (z ≈ 7). Combining the response from UVOT with ground-based observatories and in particular GROND operating in the optical/NIR wavelength regime, reliable photo-zs can be obtained from z ~ 1.0 out to z ~ 10, and possibly even at higher redshifts in some favorable cases, provided that these GRBs exist, are localized quickly, have sufficiently bright afterglows and are not heavily obscured. © 2011 ESO.

We analyse the properties of the host galaxy of the optically dark gamma-ray burst (GRB) 020819 (z = 0.41) and discuss the possible implications in the context of "dark" GRBs. We present g'r'i'z'JHK photometry of the host galaxy and fit the broad spectral energy distribution including the public Spitzer IRAC data using stellar population models. The broad spectral energy distribution (SED) indicates a high extinction, A_V ~ 1.8 - 2.6 mag, for this relatively massive galaxy. This is the highest global extinction for a GRB host galaxy with a robust spectroscopic redshift. The properties of the host galaxy are indicative of dusty, intense star-formation, which differ from those of the current sample of GRB hosts. This implies that the dust extinction is one of the main reasons for the darkness of low-redshift bursts and that the long GRB host population is far more diverse than previously anticipated., Accepted for publication in A&A Letters

We present a densely sampled early light curve of the optical/near-infrared (NIR) afterglow of the X-Ray Flash (XRF) 071031 at z=2.692. Simultaneous and continuous observations in seven photometric bands from g' to K with GROND at the 2.2 m MPI/ESO telescope on LaSilla were performed between 4 minutes and 7 hours after the burst. The light curve consists of 547 individual points which allows us to study the early evolution of the optical transient associated with XRF 071031 in great detail. The optical/NIR light curve is dominated by an early increase in brightness which can be attributed to the apparent onset of the forward shock emission. There are several bumps which are superimposed onto the overall rise and decay. Significant flaring is also visible in the Swift X-Ray Telescope (XRT) light curve from early to late times. The availability of high quality, broadband data enables detailed studies of the connection between the X-ray and optical/NIR afterglow and its colour evolution during the first night post burst. We find evidence of spectral hardening in the optical bands contemporaneous with the emergence of the bumps from an underlying afterglow component. The bumps in the optical/NIR light curve can be associated with flares in the X-ray regime suggesting late central engine activity as the common origin., Comment: Accepted for publication in ApJ

We describe the construction of GROND, a 7-channel imager, primarily designed for rapid observations of gamma-ray burst afterglows. It allows simultaneous imaging in the Sloan g'r'i'z' and near-infrared $JHK$ bands. GROND was commissioned at the MPI/ESO 2.2m telescope at La Silla (Chile) in April 2007, and first results of its performance and calibration are presented., Comment: 25 pages, 21 figs, PASP (subm); version with full-resolution figures at http://www.mpe.mpg.de/~jcg/GROND/grond_pasp.pdf

The rapid dissemination of an arcmin-sized HETE-2 localization of the long-duration X-ray flash GRB 030528 led to a ground-based multi-observatory follow-up campaign. We report the discovery of the near-IR afterglow, and also describe the detection of the underlying host galaxy in the optical and near-IR bands. The afterglow is classified as "optically dark" as it was not detected in the optical band. The K-band photometry presented here suggests that the lack of optical detection was simply the result of observational limitations (lack of rapid and deep observations plus high foreground extinction). Simple power law fits to the afterglow in the K-band suggest a typically decay with a slope of alpha=1.2. The properties of the host are consistent with the idea that GRB hosts are star forming blue galaxies. The redshift of GRB 030528 can not be determined accurately, but the data favour redshifts less than unity. In addition, we present an optical and near-IR analysis of the X-ray source CXOU J170354.0--223654 from the vicinity of GRB 030528., Comment: 12 pages, 9 figures, A&A accepted

We report on the discovery of the near-IR transient of the long-duration gamma-ray burst GRB 030528 and its underlying host galaxy. The near-IR transient was first observed in JHKs with SofI at the 3.6m ESO-NTT 16hrs after the burst and later observations revealed a fading Ks-band afterglow. The afterglow nature was confirmed by Chandra observations which found the source to be a fading X-ray emitter. The lack of an optical afterglow and the early faintness in the near-IR (Ks>18.5 mag) place GRB 030528 in a parameter space usually populated by dark bursts. We find the host to be an elongated blue galaxy., 4 pages, 2 figures, aipproc.cls, to appear in the Proceedings of the 2003 GRB Conference, Santa Fe

(Abridged) Until recently the information inferred from gamma-ray burst follow-up observations was mostly limited to optically bright afterglows, biasing all demographic studies against sight-lines that contain large amounts of dust. Here, we present GRB afterglow and host observations for a sample of bursts that are exemplary of previously missed ones because of high visual extinction along the sight-line. This facilitates an investigation of the properties, geometry and location of the absorbing dust of these poorly-explored host galaxies, and a comparison to hosts from optically-selected samples. The hosts of the dustiest afterglows are diverse in their properties, but on average redder, more luminous and massive than the hosts of optically-bright events. We hence probe a different galaxy population, suggesting that previous host samples miss most of the massive, chemically-evolved and metal-rich members. This also indicates that the dust along the sight-line is often related to host properties, and thus probably located in the diffuse ISM or interstellar clouds and not in the immediate GRB environment. Some of the hosts in our sample, are blue, young or of small stellar mass illustrating that even apparently non-extinguished galaxies possess very dusty sight-lines due to a patchy dust distribution. The presented observations establish a population of luminous, massive and correspondingly chemically-evolved GRB hosts. This suggests that GRBs trace the global star-formation rate better than studies based on optically-selected host samples indicate, and the previously-claimed deficiency of high-mass host galaxies was at least partially a selection effect., 17 pages, 13 figures, resubmitted to A&A after referee report