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The reactions of the 1,3-benzenedicarboxaldehyde (isophthalaldehyde (IPA)) and the 1,4-benzenedicarboxaldehyde (terephthalaldehyde (TPA)) and their equilibrium constants are described. The equilibrium constants for reactions of both TPA and IPA with 2-aminoethanol are higher than those seen for the reactions of dialdehydes with N[H.sub.3], even when the p[K.sub.a] values of these two reagents have differed slightly.

Measuring low concentrations of clinically-important biomarkers using porous bead-based lab-on-a-chip (LOC) platforms is critical for the successful implementation of point-of-care (POC) devices. One way to meet this objective is to optimize the geometry of the bead holder, referred to here as a micro-container. In this work, two geometric micro-containers were explored, the inverted pyramid frustum (PF) and the inverted clipped pyramid frustum (CPF). Finite element models of this bead array assay system were developed to optimize the micro-container and bead geometries for increased pressure, to increase analyte capture in porous bead-based fluorescence immunoassays. Custom micro-milled micro-container structures containing an inverted CPF geometry resulted in a 28% reduction in flow-through regions from traditional anisotropically-etched pyramidal geometry derived from Si-111 termination layers. This novel "reduced flow-through" design resulted in a 33% increase in analyte penetration into the bead and twofold increase in fluorescence signal intensity as demonstrated with C-Reactive Protein (CRP) antigen, an important biomarker of inflammation. A consequent twofold decrease in the limit of detection (LOD) and the limit of quantification (LOQ) of a proof-of-concept assay for the free isoform of Prostate-Specific Antigen (free PSA), an important biomarker for prostate cancer detection, is also presented. Furthermore, a 53% decrease in the bead diameter is shown to result in a 160% increase in pressure and 2.5-fold increase in signal, as estimated by COMSOL models and confirmed experimentally by epi-fluorescence microscopy. Such optimizations of the bead micro-container and bead geometries have the potential to significantly reduce the LODs and reagent costs for spatially programmed bead-based assay systems of this type.

The retention and elution of proteins in ion-exchange chromatography is routinely controlled by adjusting the mobile phase salt concentration. It has repeatedly been observed, as judged from adsorption isotherms, that the apparent heterogeneity of adsorption is lower at more-eluting, higher ionic strength. Here, we present an investigation into the mechanism of this phenomenon using a single-molecule, super-resolution imaging technique called motion-blur Points Accumulation for Imaging in Nanoscale Topography (mbPAINT). We observed that the number of functional adsorption sites was smaller at high ionic strength and that these sites had reduced desorption kinetic heterogeneity, and thus narrower predicted elution profiles, for the anion-exchange adsorption of α-lactalbumin on an agarose-supported, clustered-charge ligand stationary phase. Explanations for the narrowing of the functional population such as inter-protein interactions and protein or support structural changes were investigated through kinetic analysis, circular dichroism spectroscopy, and microscopy of agarose microbeads, respectively. The results suggest the reduction of heterogeneity is due to both electrostatic screening between the protein and ligand and tuning the steric availability within the agarose support. Overall, we have shown that single molecule spectroscopy can aid in understanding the influence of ionic strength on the population of functional adsorbent sites participating in the ion-exchange chromatographic separation of proteins., (Copyright © 2014 Elsevier B.V. All rights reserved.)

Sample delivery is a crucial aspect of point-of-care applications where sample volumes need to be low and assay times short, while providing high analytical and clinical sensitivity. In this paper, we explore the influence of the factors surrounding sample delivery on analyte capture in an immunoassay-based sensor array manifold of porous beads resting in individual wells. We model using computational fluid dynamics and a flow-through device containing beads sensitized specifically to C-reactive protein (CRP) to explore the effects of volume of sample, rate of sample delivery, and use of recirculation vs. unilateral delivery on the effectiveness of the capture of CRP on and within the porous bead sensor. Rate of sample delivery lends to the development of a time-dependent, shrinking depletion region around the bead exterior. Our findings reveal that at significantly high rates of delivery, unique to porous bead substrates, capture at the rim of the bead is reaction-limited, while capture in the interior of the bead is transport-limited. While the fluorescence signal results from the aggregate of captured material throughout the bead, multiple kinetic regimes exist within the bead. Further, under constant pressure conditions dictated by the array architecture, we reveal the existence of an optimal flow rate that generates the highest signal, under point-of-care constraints of limited-volume and limited-time. When high sensitivity is needed, recirculation can be implemented to overcome the analyte capture limitations due to volume and time constraints. Computational simulations agree with experimental results performed under similar conditions.

This article reports on the fabrication of a disposable bio-nano-chip (BNC), a microfluidic device composed of polydimethylsiloxane (PDMS) and thiolene-based optical epoxy which is both cost-effective and suitable for high performance immunoassays. A novel room temperature (RT) bonding technique was utilized so as to achieve irreversible covalent bonding between PDMS and thiolene-based epoxy layers, while at the same time being compatible with the insertion of agarose bead sensors, selectively arranged in an array of pyramidal microcavities replicated in the thiolene thin film layer. In the sealed device, the bead-supporting epoxy film is sandwiched between two PDMS layers comprising of fluidic injection and drain channels. The agarose bead sensors used in the device are sensitized with anti-C-reactive protein (CRP) antibody, and a fluorescent sandwich-type immunoassay was run to characterize the performance of this device. Computational fluid dynamics (CFD) was used based on the device specifications to model the bead penetration. Experimental data revealed analyte penetration of the immunocomplex to 100 μm into the 280 μm diameter agarose beads, which correlated well with the simulation. A dose-response curve was obtained and the linear dynamic range of the assay was established over 1 ng/mL to 50 ng/mL with a limit of detection less than 1 ng/mL., (Copyright © 2011 Elsevier B.V. All rights reserved.)

Reactions of orthophthalaldehyde (OPA) with amines are used in the determination of amino acids and in applications of OPA as a biocide. To contribute to the understanding of processes involved, the reactions of OPA with ammonia, which are conveniently slow, were studied. In a set of rapidly established equilibria, the 1,3-dihydroxyindole and the product of its dehydration are formed (Scheme 1). The individual equilibria were identified and equilibrium constants determined using DC polarography and UV spectra. The ring closure involves the carbinolamine; the imine formation is a side reaction. Both the ring formation and the dehydration of the carbinolamine are generally acid catalyzed. In the finally established overall equilibria between OPA and the isoindole derivative, the concentrations of intermediates are negligible. The same applies to the reaction of OPA with 2-aminoethanol, in which the initial formation of a carbinolamine and of an imine are too fast to be followed. Very slow reactions taking place during periods of hours or days, which probably result in the formation of dimeric species, have also been observed. This contribution demonstrates the advantages of combinations of polarographic and spectrophotometric techniques in the investigation of complex reactions of some organic compounds.

Measuring telomerase activity has proven successful for the determination of cancer in malignant somatic cells. Early conventional methods for the detection of telomerase activity include in vitro analysis via a primer extension assay, and the telomeric repeat amplification protocol (TRAP) assay. TRAP incorporates the polymerase chain reaction (PCR) step to increase the sensitivity of a given sample. However, research suggests that the TRAP technique suffers from false negative results, caused by failure of its PCR step. Other limitations of TRAP include the post-PCR steps involving polyacrylamide gel electrophoresis which are time inefficient. Thus, various efforts have been made to eliminate the PCR step of TRAP by using a variety of biosensor detection devices. This review mainly focuses on these alternatives including: optical, electrochemical, magnetic, and nanowire conductive signaling techniques to measure the telomerase activity produced via label free biosensor assay-via biocatalytic labels involving beacons, DNAzyme, ferrocenyl-naphthalene diimides, avidin-alkaline phosphatase and semiconductor quantum dots (QDs). These biosensor techniques are sensitive and provide precise and rapid results in the detection of telomerase activity.

Orthophthalaldehyde (1,2-dicarboxaldehyde) (OPA) forms in the presence of a strong nucleophile with amino acids isoindole derivatives. The reaction is used in fluorometric determination of amino acids. The mechanism of these processes is not understood. OPA is present in aqueous solutions in three forms: unhydrated (I(a)), monohydrated acyclic (I(b)), and cyclic hemiacetal (I(c)). The absence of data for the molar absorptivities of these forms, together with overlap of their absorption bands, limits the application of spectrophotometry. Measurement of polarographic limiting currents of forms I(a) and I(b) enables determination of equilibrium constants K1 (formation of I(b)) and K2 (for the ring formation). The presence of these forms was supported by 1H NMR and 13C NMR. The rate of hydration of OPA is general-acid-base-catalyzed, but that of dehydration shows only specific-acid-base catalysis. The rate of hydration is controlled by general-acid-base-catalyzed addition of water to I(a). The rate of dehydration depends on the opening of the ring in I(c), which is specific-acid-base-catalyzed. At pH > 10 OPA undergoes a complex set of acid-base reactions (Scheme 3). The presence of polarographic anodic waves and oxidation on the gold electrode indicates the importance of the presence of a geminal diol form (II(a)). Establishment of equilibria among the three forms of OPA together with reactions at pH > 10 has to be considered in elucidating the reaction scheme of procedures using OPA as a reagent in the determination of amino acids.