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241 results on '"Kudrna, David"'

1. Pan-genome inversion index reveals evolutionary insights into the subpopulation structure of Asian rice

Author

Zhou, Yong, Yu, Zhichao, Chebotarov, Dmytro, Chougule, Kapeel, Lu, Zhenyuan, Rivera, Luis F., Kathiresan, Nagarajan, Al-Bader, Noor, Mohammed, Nahed, Alsantely, Aseel, Mussurova, Saule, Santos, João, Thimma, Manjula, Troukhan, Maxim, Fornasiero, Alice, Green, Carl D., Copetti, Dario, Kudrna, David, Llaca, Victor, Lorieux, Mathias, Zuccolo, Andrea, Ware, Doreen, McNally, Kenneth, Zhang, Jianwei, and Wing, Rod A.

Published
2023
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2. De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes

Author

Hufford, Matthew B, Seetharam, Arun S, Woodhouse, Margaret R, Chougule, Kapeel M, Ou, Shujun, Liu, Jianing, Ricci, William A, Guo, Tingting, Olson, Andrew, Qiu, Yinjie, Della Coletta, Rafael, Tittes, Silas, Hudson, Asher I, Marand, Alexandre P, Wei, Sharon, Lu, Zhenyuan, Wang, Bo, Tello-Ruiz, Marcela K, Piri, Rebecca D, Wang, Na, Kim, Dong Won, Zeng, Yibing, O'Connor, Christine H, Li, Xianran, Gilbert, Amanda M, Baggs, Erin, Krasileva, Ksenia V, Portwood, John L, Cannon, Ethalinda KS, Andorf, Carson M, Manchanda, Nancy, Snodgrass, Samantha J, Hufnagel, David E, Jiang, Qiuhan, Pedersen, Sarah, Syring, Michael L, Kudrna, David A, Llaca, Victor, Fengler, Kevin, Schmitz, Robert J, Ross-Ibarra, Jeffrey, Yu, Jianming, Gent, Jonathan I, Hirsch, Candice N, Ware, Doreen, and Dawe, R Kelly

Subjects
Genetics, Human Genome, Centromere, Chromosome Mapping, Chromosomes, Plant, DNA Methylation, Disease Resistance, Genes, Plant, Genetic Variation, Genome, Plant, Genotype, High-Throughput Nucleotide Sequencing, Molecular Sequence Annotation, Multifactorial Inheritance, Phenotype, Plant Diseases, Polymorphism, Single Nucleotide, Regulatory Sequences, Nucleic Acid, Sequence Analysis, DNA, Tetraploidy, Transcriptome, Whole Genome Sequencing, Zea mays, General Science & Technology
Abstract

We report de novo genome assemblies, transcriptomes, annotations, and methylomes for the 26 inbreds that serve as the founders for the maize nested association mapping population. The number of pan-genes in these diverse genomes exceeds 103,000, with approximately a third found across all genotypes. The results demonstrate that the ancient tetraploid character of maize continues to degrade by fractionation to the present day. Excellent contiguity over repeat arrays and complete annotation of centromeres revealed additional variation in major cytological landmarks. We show that combining structural variation with single-nucleotide polymorphisms can improve the power of quantitative mapping studies. We also document variation at the level of DNA methylation and demonstrate that unmethylated regions are enriched for cis-regulatory elements that contribute to phenotypic variation.

Published
2021

3. Genetic dissection of natural variation in oilseed traits of camelina by whole‐genome resequencing and QTL mapping

Author

Li, Huang, Hu, Xiao, Lovell, John T, Grabowski, Paul P, Mamidi, Sujan, Chen, Cindy, Amirebrahimi, Mojgan, Kahanda, Indika, Mumey, Brendan, Barry, Kerrie, Kudrna, David, Schmutz, Jeremy, Lachowiec, Jennifer, and Lu, Chaofu

Subjects
Agricultural, Veterinary and Food Sciences, Biological Sciences, Genetics, Agriculture, Land and Farm Management, Crop and Pasture Production, Horticultural Production, Human Genome, Biotechnology, Zero Hunger, Brassicaceae, Dissection, Genome-Wide Association Study, Plant Breeding, Quantitative Trait Loci, Plant Biology, Crop and pasture production, Plant biology
Abstract

Camelina [Camelina sativa (L.) Crantz] is an oilseed crop in the Brassicaceae family that is currently being developed as a source of bioenergy and healthy fatty acids. To facilitate modern breeding efforts through marker-assisted selection and biotechnology, we evaluated genetic variation among a worldwide collection of 222 camelina accessions. We performed whole-genome resequencing to obtain single nucleotide polymorphism (SNP) markers and to analyze genomic diversity. We also conducted phenotypic field evaluations in two consecutive seasons for variations in key agronomic traits related to oilseed production such as seed size, oil content (OC), fatty acid composition, and flowering time. We determined the population structure of the camelina accessions using 161,301 SNPs. Further, we identified quantitative trait loci (QTL) and candidate genes controlling the above field-evaluated traits by genome-wide association studies (GWAS) complemented with linkage mapping using a recombinant inbred line (RIL) population. Characterization of the natural variation at the genome and phenotypic levels provides valuable resources to camelina genetic studies and crop improvement. The QTL and candidate genes should assist in breeding of advanced camelina varieties that can be integrated into the cropping systems for the production of high yield of oils of desired fatty acid composition.

Published
2021

4. Highly accurate long-read HiFi sequencing data for five complex genomes.

Author

Hon, Ting, Mars, Kristin, Young, Greg, Tsai, Yu-Chih, Karalius, Joseph W, Landolin, Jane M, Maurer, Nicholas, Kudrna, David, Hardigan, Michael A, Steiner, Cynthia C, Knapp, Steven J, Ware, Doreen, Shapiro, Beth, Peluso, Paul, and Rank, David R

Abstract

The PacBio® HiFi sequencing method yields highly accurate long-read sequencing datasets with read lengths averaging 10-25 kb and accuracies greater than 99.5%. These accurate long reads can be used to improve results for complex applications such as single nucleotide and structural variant detection, genome assembly, assembly of difficult polyploid or highly repetitive genomes, and assembly of metagenomes. Currently, there is a need for sample data sets to both evaluate the benefits of these long accurate reads as well as for development of bioinformatic tools including genome assemblers, variant callers, and haplotyping algorithms. We present deep coverage HiFi datasets for five complex samples including the two inbred model genomes Mus musculus and Zea mays, as well as two complex genomes, octoploid Fragaria × ananassa and the diploid anuran Rana muscosa. Additionally, we release sequence data from a mock metagenome community. The datasets reported here can be used without restriction to develop new algorithms and explore complex genome structure and evolution. Data were generated on the PacBio Sequel II System.

Published
2020

5. A willow sex chromosome reveals convergent evolution of complex palindromic repeats.

Author

Zhou, Ran, Macaya-Sanz, David, Carlson, Craig, Schmutz, Jeremy, Jenkins, Jerry, Kudrna, David, Sharma, Aditi, Sandor, Laura, Shu, Shengqiang, Barry, Kerrie, Tuskan, Gerald, Ma, Tao, Liu, Jianquan, Olson, Matthew, Smart, Lawrence, and DiFazio, Stephen

Subjects
Gene conversion, Genome, Palindrome, Salix, Sex, W chromosome, Chromosomes, Plant, Evolution, Molecular, Gene Conversion, Inverted Repeat Sequences, Salix, Sex Chromosomes
Abstract

BACKGROUND: Sex chromosomes have arisen independently in a wide variety of species, yet they share common characteristics, including the presence of suppressed recombination surrounding sex determination loci. Mammalian sex chromosomes contain multiple palindromic repeats across the non-recombining region that show sequence conservation through gene conversion and contain genes that are crucial for sexual reproduction. In plants, it is not clear if palindromic repeats play a role in maintaining sequence conservation in the absence of homologous recombination. RESULTS: Here we present the first evidence of large palindromic structures in a plant sex chromosome, based on a highly contiguous assembly of the W chromosome of the dioecious shrub Salix purpurea. The W chromosome has an expanded number of genes due to transpositions from autosomes. It also contains two consecutive palindromes that span a region of 200 kb, with conspicuous 20-kb stretches of highly conserved sequences among the four arms that show evidence of gene conversion. Four genes in the palindrome are homologous to genes in the sex determination regions of the closely related genus Populus, which is located on a different chromosome. These genes show distinct, floral-biased expression patterns compared to paralogous copies on autosomes. CONCLUSION: The presence of palindromes in sex chromosomes of mammals and plants highlights the intrinsic importance of these features in adaptive evolution in the absence of recombination. Convergent evolution is driving both the independent establishment of sex chromosomes as well as their fine-scale sequence structure.

Published
2020

6. Genome sequence of the model rice variety KitaakeX

Author

Jain, Rashmi, Jenkins, Jerry, Shu, Shengqiang, Chern, Mawsheng, Martin, Joel A, Copetti, Dario, Duong, Phat Q, Pham, Nikki T, Kudrna, David A, Talag, Jayson, Schackwitz, Wendy S, Lipzen, Anna M, Dilworth, David, Bauer, Diane, Grimwood, Jane, Nelson, Catherine R, Xing, Feng, Xie, Weibo, Barry, Kerrie W, Wing, Rod A, Schmutz, Jeremy, Li, Guotian, and Ronald, Pamela C

Subjects
Biological Sciences, Bioinformatics and Computational Biology, Genetics, Biotechnology, Human Genome, Computational Biology, Genetic Variation, Genome, Plant, Genomics, Molecular Sequence Annotation, Oryza, Phenotype, Whole Genome Sequencing, Rice, Kitaake, KitaakeX, XA21 immune receptor, Whole genome sequence, De novo genome assembly, Nipponbare, Zhenshan97, Information and Computing Sciences, Medical and Health Sciences, Bioinformatics, Biological sciences, Biomedical and clinical sciences
Abstract

BackgroundThe availability of thousands of complete rice genome sequences from diverse varieties and accessions has laid the foundation for in-depth exploration of the rice genome. One drawback to these collections is that most of these rice varieties have long life cycles, and/or low transformation efficiencies, which limits their usefulness as model organisms for functional genomics studies. In contrast, the rice variety Kitaake has a rapid life cycle (9 weeks seed to seed) and is easy to transform and propagate. For these reasons, Kitaake has emerged as a model for studies of diverse monocotyledonous species.ResultsHere, we report the de novo genome sequencing and analysis of Oryza sativa ssp. japonica variety KitaakeX, a Kitaake plant carrying the rice XA21 immune receptor. Our KitaakeX sequence assembly contains 377.6 Mb, consisting of 33 scaffolds (476 contigs) with a contig N50 of 1.4 Mb. Complementing the assembly are detailed gene annotations of 35,594 protein coding genes. We identified 331,335 genomic variations between KitaakeX and Nipponbare (ssp. japonica), and 2,785,991 variations between KitaakeX and Zhenshan97 (ssp. indica). We also compared Kitaake resequencing reads to the KitaakeX assembly and identified 219 small variations. The high-quality genome of the model rice plant KitaakeX will accelerate rice functional genomics.ConclusionsThe high quality, de novo assembly of the KitaakeX genome will serve as a useful reference genome for rice and will accelerate functional genomics studies of rice and other species.

Published
2019

8. The Cardamine hirsuta genome offers insight into the evolution of morphological diversity

Author

Gan, Xiangchao, Hay, Angela, Kwantes, Michiel, Haberer, Georg, Hallab, Asis, Ioio, Raffaele Dello, Hofhuis, Hugo, Pieper, Bjorn, Cartolano, Maria, Neumann, Ulla, Nikolov, Lachezar A, Song, Baoxing, Hajheidari, Mohsen, Briskine, Roman, Kougioumoutzi, Evangelia, Vlad, Daniela, Broholm, Suvi, Hein, Jotun, Meksem, Khalid, Lightfoot, David, Shimizu, Kentaro K, Shimizu-Inatsugi, Rie, Imprialou, Martha, Kudrna, David, Wing, Rod, Sato, Shusei, Huijser, Peter, Filatov, Dmitry, Mayer, Klaus FX, Mott, Richard, and Tsiantis, Miltos

Subjects
Human Genome, Genetics, Biotechnology, Generic health relevance, Biological Evolution, Cardamine, Evolution, Molecular, Gene Duplication, Gene Expression Regulation, Plant, Genome, Plant, Phylogeny, Plant Proteins, Transcription Factors, Plant Biology, Crop and Pasture Production
Abstract

Finding causal relationships between genotypic and phenotypic variation is a key focus of evolutionary biology, human genetics and plant breeding. To identify genome-wide patterns underlying trait diversity, we assembled a high-quality reference genome of Cardamine hirsuta, a close relative of the model plant Arabidopsis thaliana. We combined comparative genome and transcriptome analyses with the experimental tools available in C. hirsuta to investigate gene function and phenotypic diversification. Our findings highlight the prevalent role of transcription factors and tandem gene duplications in morphological evolution. We identified a specific role for the transcriptional regulators PLETHORA5/7 in shaping leaf diversity and link tandem gene duplication with differential gene expression in the explosive seed pod of C. hirsuta. Our work highlights the value of comparative approaches in genetically tractable species to understand the genetic basis for evolutionary change.

Published
2016

9. Whole‐genome sequencing of allotetraploid bermudagrass reveals the origin of Cynodon and candidate genes for salt tolerance.

Author

Wang, Huan, Fang, Tilin, Li, Xiaoning, Xie, Yan, Wang, Wei, Hu, Tao, Kudrna, David, Amombo, Erick, Yin, Yanling, Fan, Shugao, Gong, Zhiyun, Huang, Yicheng, Xia, Chunjiao, Zhang, Jianwei, Wu, Yanqi, and Fu, Jinmin

Subjects
BERMUDA grass, WHOLE genome sequencing, BIOLOGICAL evolution, GENOME-wide association studies, GENES, NUCLEOTIDE sequencing, SINGLE nucleotide polymorphisms, COMPARATIVE genomics
Abstract

SUMMARY: Bermudagrass (Cynodon dactylon) is a globally distributed, extensively used warm‐season turf and forage grass with high tolerance to salinity and drought stress in alkaline environments. However, the origin of the species and genetic mechanisms for salinity tolerance in the species are basically unknown. Accordingly, we set out to study evolution divergence events in the Cynodon genome and to identify genes for salinity tolerance. We developed a 604.0 Mb chromosome‐level polyploid genome sequence for bermudagrass 'A12359' (n = 18). The C. dactylon genome comprises 2 complete sets of homoeologous chromosomes, each with approximately 30 000 genes, and most genes are conserved as syntenic pairs. Phylogenetic study showed that the initial Cynodon species diverged from Oropetium thomaeum approximately 19.7–25.4 million years ago (Mya), the A and B subgenomes of C. dactylon diverged approximately 6.3–9.1 Mya, and the bermudagrass polyploidization event occurred 1.5 Mya on the African continent. Moreover, we identified 82 candidate genes associated with seven agronomic traits using a genome‐wide association study, and three single‐nucleotide polymorphisms were strongly associated with three salt resistance genes: RAP2‐2, CNG channels, and F14D7.1. These genes may be associated with enhanced bermudagrass salt tolerance. These bermudagrass genomic resources, when integrated, may provide fundamental insights into evolution of diploid and tetraploid genomes and enhance the efficacy of comparative genomics in studying salt tolerance in Cynodon. Significance Statement: We have successfully sequenced the first heterozygous, tetraploid genome of Cynodon dactylon, a key warm‐season turfgrass and forage crop. Our GWAS analysis has identified genes linked to vital agronomic traits, enhancing our understanding of bermudagrass cultivation. [ABSTRACT FROM AUTHOR]

Published
2024
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11. Detailed analysis of a contiguous 22-Mb region of the maize genome.

Author

Wei, Fusheng, Stein, Joshua C, Liang, Chengzhi, Zhang, Jianwei, Fulton, Robert S, Baucom, Regina S, De Paoli, Emanuele, Zhou, Shiguo, Yang, Lixing, Han, Yujun, Pasternak, Shiran, Narechania, Apurva, Zhang, Lifang, Yeh, Cheng-Ting, Ying, Kai, Nagel, Dawn H, Collura, Kristi, Kudrna, David, Currie, Jennifer, Lin, Jinke, Kim, Hyeran, Angelova, Angelina, Scara, Gabriel, Wissotski, Marina, Golser, Wolfgang, Courtney, Laura, Kruchowski, Scott, Graves, Tina A, Rock, Susan M, Adams, Stephanie, Fulton, Lucinda A, Fronick, Catrina, Courtney, William, Kramer, Melissa, Spiegel, Lori, Nascimento, Lydia, Kalyanaraman, Ananth, Chaparro, Cristian, Deragon, Jean-Marc, Miguel, Phillip San, Jiang, Ning, Wessler, Susan R, Green, Pamela J, Yu, Yeisoo, Schwartz, David C, Meyers, Blake C, Bennetzen, Jeffrey L, Martienssen, Robert A, McCombie, W Richard, Aluru, Srinivas, Clifton, Sandra W, Schnable, Patrick S, Ware, Doreen, Wilson, Richard K, and Wing, Rod A

Subjects
Chromosomes, Plant, Sorghum, Zea mays, DNA Transposable Elements, RNA, Plant, Physical Chromosome Mapping, Evolution, Molecular, Gene Rearrangement, Gene Duplication, Base Sequence, Base Pairing, Sequence Homology, Nucleic Acid, Synteny, Mutation, Genes, Plant, Genome, Plant, Open Reading Frames, Molecular Sequence Data, Genetic Loci, Oryza, Chromosomes, Plant, Evolution, Molecular, Genes, Genome, RNA, Sequence Homology, Nucleic Acid, Genetics, Developmental Biology
Abstract

Most of our understanding of plant genome structure and evolution has come from the careful annotation of small (e.g., 100 kb) sequenced genomic regions or from automated annotation of complete genome sequences. Here, we sequenced and carefully annotated a contiguous 22 Mb region of maize chromosome 4 using an improved pseudomolecule for annotation. The sequence segment was comprehensively ordered, oriented, and confirmed using the maize optical map. Nearly 84% of the sequence is composed of transposable elements (TEs) that are mostly nested within each other, of which most families are low-copy. We identified 544 gene models using multiple levels of evidence, as well as five miRNA genes. Gene fragments, many captured by TEs, are prevalent within this region. Elimination of gene redundancy from a tetraploid maize ancestor that originated a few million years ago is responsible in this region for most disruptions of synteny with sorghum and rice. Consistent with other sub-genomic analyses in maize, small RNA mapping showed that many small RNAs match TEs and that most TEs match small RNAs. These results, performed on approximately 1% of the maize genome, demonstrate the feasibility of refining the B73 RefGen_v1 genome assembly by incorporating optical map, high-resolution genetic map, and comparative genomic data sets. Such improvements, along with those of gene and repeat annotation, will serve to promote future functional genomic and phylogenomic research in maize and other grasses.

Published
2009

12. Oryza glumaepatula: A wild relative to improve drought tolerance in cultivated rice

Author

Thathapalli Prakash, Parthiban, primary, Chebotarov, Dmytro, additional, Zhang, Jianwei, additional, Kudrna, David A, additional, Torres, Rolando O, additional, Natividad, Mignon A, additional, Quintana, Marinell R, additional, Song, Jiaming, additional, Maldonado, Carlos E, additional, Hechanova, Sherry Lou, additional, Jena, Kshirod, additional, Wing, Rod A, additional, and Henry, Amelia, additional

Published
2023
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14. Gapless assembly of maize chromosomes using long-read technologies

Author

Liu, Jianing, Seetharam, Arun S., Chougule, Kapeel, Ou, Shujun, Swentowsky, Kyle W., Gent, Jonathan I., Llaca, Victor, Woodhouse, Margaret R., Manchanda, Nancy, Presting, Gernot G., Kudrna, David A., Alabady, Magdy, Hirsch, Candice N., Fengler, Kevin A., Ware, Doreen, Michael, Todd P., Hufford, Matthew B., and Dawe, R. Kelly

Published
2020
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15. Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63

Author

Zhang, Jianwei, Chen, Ling-Ling, Xing, Feng, Kudrna, David A., Yao, Wen, Copetti, Dario, Mu, Ting, Li, Weiming, Song, Jia-Ming, Xie, Weibo, Lee, Seunghee, Talag, Jayson, Shao, Lin, An, Yue, Zhang, Chun-Liu, Ouyang, Yidan, Sun, Shuai, Jiao, Wen-Biao, Lv, Fang, Du, Bogu, Luo, Meizhong, Maldonado, Carlos Ernesto, Goicoechea, Jose Luis, Xiong, Lizhong, Wu, Changyin, Xing, Yongzhong, Zhou, Dao-Xiu, Yu, Sibin, Zhao, Yu, Wang, Gongwei, Yu, Yeisoo, Luo, Yijie, Zhou, Zhi-Wei, Hurtado, Beatriz Elena Padilla, Danowitz, Ann, Wing, Rod A., and Zhang, Qifa

Published
2016

16. Genome-wide association mapping of date palm fruit traits

Author

Hazzouri, Khaled M., Gros-Balthazard, Muriel, Flowers, Jonathan M., Copetti, Dario, Lemansour, Alain, Lebrun, Marc, Masmoudi, Khaled, Ferrand, Sylvie, Dhar, Michael I., Fresquez, Zoë A., Rosas, Ulises, Zhang, Jianwei, Talag, Jayson, Lee, Seunghee, Kudrna, David, Powell, Robyn F., Leitch, Ilia J., Krueger, Robert R., Wing, Rod A., Amiri, Khaled M. A., and Purugganan, Michael D.

Published
2019
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19. Aluminum tolerance in maize is associated with higher MATE1 gene copy number

Author

Maron, Lyza G., Guimarães, Claudia T., Kirst, Matias, Albert, Patrice S., Birchler, James A., Bradbury, Peter J., Buckler, Edward S., Coluccio, Alison E., Danilova, Tatiana V., Kudrna, David, Magalhaes, Jurandir V., Piñeros, Miguel A., Schatz, Michael C., Wing, Rod A., and Kochian, Leon V.

Published
2013

20. The genome of Eucalyptus grandis

Author

Myburg, Alexander A., Grattapaglia, Dario, Tuskan, Gerald A., Hellsten, Uffe, Hayes, Richard D., Grimwood, Jane, Jenkins, Jerry, Lindquist, Erika, Tice, Hope, Bauer, Diane, Goodstein, David M., Dubchak, Inna, Poliakov, Alexandre, Mizrachi, Eshchar, Kullan, Anand R. K., Hussey, Steven G., Pinard, Desre, van der Merwe, Karen, Singh, Pooja, van Jaarsveld, Ida, Silva-Junior, Orzenil B., Togawa, Roberto C., Pappas, Marilia R., Faria, Danielle A., Sansaloni, Carolina P., Petroli, Cesar D., Yang, Xiaohan, Ranjan, Priya, Tschaplinski, Timothy J., Ye, Chu-Yu, Li, Ting, Sterck, Lieven, Vanneste, Kevin, Murat, Florent, Soler, Marçal, Clemente, Hélène San, Saidi, Naijib, Cassan-Wang, Hua, Dunand, Christophe, Hefer, Charles A., Bornberg-Bauer, Erich, Kersting, Anna R., Vining, Kelly, Amarasinghe, Vindhya, Ranik, Martin, Naithani, Sushma, Elser, Justin, Boyd, Alexander E., Liston, Aaron, Spatafora, Joseph W., Dharmwardhana, Palitha, Raja, Rajani, Sullivan, Christopher, Romanel, Elisson, Alves-Ferreira, Marcio, Külheim, Carsten, Foley, William, Carocha, Victor, Paiva, Jorge, Kudrna, David, Brommonschenkel, Sergio H., Pasquali, Giancarlo, Byrne, Margaret, Rigault, Philippe, Tibbits, Josquin, Spokevicius, Antanas, Jones, Rebecca C., Steane, Dorothy A., Vaillancourt, René E., Potts, Brad M., Joubert, Fourie, Barry, Kerrie, Pappas, Georgios J., Strauss, Steven H., Jaiswal, Pankaj, Grima-Pettenati, Jacqueline, Salse, Jérôme, Van de Peer, Yves, Rokhsar, Daniel S., and Schmutz, Jeremy

Published
2014
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26. Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds

Author

Singh, Rajinder, Ong-Abdullah, Meilina, Low, Eng-Ti Leslie, Manaf, Mohamad Arif Abdul, Rosli, Rozana, Nookiah, Rajanaidu, Ooi, Leslie Cheng-Li, Ooi, Siew–Eng, Chan, Kuang-Lim, Halim, Mohd Amin, Azizi, Norazah, Nagappan, Jayanthi, Bacher, Blaire, Lakey, Nathan, Smith, Steven W., He, Dong, Hogan, Michael, Budiman, Muhammad A., Lee, Ernest K., DeSalle, Rob, Kudrna, David, Goicoechea, Jose Luis, Wing, Rod A., Wilson, Richard K., Fulton, Robert S., Ordway, Jared M., Martienssen, Robert A., and Sambanthamurthi, Ravigadevi

Published
2013
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27. The tomato genome sequence provides insights into fleshy fruit evolution

Author

Sato, Shusei, Tabata, Satoshi, Hirakawa, Hideki, Asamizu, Erika, Shirasawa, Kenta, Isobe, Sachiko, Kaneko, Takakazu, Nakamura, Yasukazu, Shibata, Daisuke, Aoki, Koh, Egholm, Michael, Knight, James, Bogden, Robert, Li, Changbao, Shuang, Yang, Xu, Xun, Pan, Shengkai, Cheng, Shifeng, Liu, Xin, Ren, Yuanyuan, Wang, Jun, Albiero, Alessandro, Dal Pero, Francesca, Todesco, Sara, Van Eck, Joyce, Buels, Robert M., Bombarely, Aureliano, Gosselin, Joseph R., Huang, Minyun, Leto, Jonathan A., Menda, Naama, Strickler, Susan, Mao, Linyong, Gao, Shan, Tecle, Isaak Y., York, Thomas, Zheng, Yi, Vrebalov, Julia T., Lee, JeMin, Zhong, Silin, Mueller, Lukas A., Stiekema, Willem J., Ribeca, Paolo, Alioto, Tyler, Yang, Wencai, Huang, Sanwen, Du, Yongchen, Zhang, Zhonghua, Gao, Jianchang, Guo, Yanmei, Wang, Xiaoxuan, Li, Ying, He, Jun, Li, Chuanyou, Cheng, Zhukuan, Zuo, Jianru, Ren, Jianfeng, Zhao, Jiuhai, Yan, Liuhua, Jiang, Hongling, Wang, Bao, Li, Hongshuang, Li, Zhenjun, Fu, Fuyou, Chen, Bingtang, Han, Bin, Feng, Qi, Fan, Danlin, Wang, Ying, Ling, Hongqing, Xue, Yongbiao, Ware, Doreen, Richard McCombie, W., Lippman, Zachary B., Chia, Jer-Ming, Jiang, Ke, Pasternak, Shiran, Gelley, Laura, Kramer, Melissa, Anderson, Lorinda K., Chang, Song-Bin, Royer, Suzanne M., Shearer, Lindsay A., Stack, Stephen M., Rose, Jocelyn K. C., Xu, Yimin, Eannetta, Nancy, Matas, Antonio J., McQuinn, Ryan, Tanksley, Steven D., Camara, Francisco, Guigó, Roderic, Rombauts, Stephane, Fawcett, Jeffrey, Van de Peer, Yves, Zamir, Dani, Liang, Chunbo, Spannagl, Manuel, Gundlach, Heidrun, Bruggmann, Remy, Mayer, Klaus, Jia, Zhiqi, Zhang, Junhong, Ye, Zhibiao, Bishop, Gerard J., Butcher, Sarah, Lopez-Cobollo, Rosa, Buchan, Daniel, Filippis, Ioannis, Abbott, James, Dixit, Rekha, Singh, Manju, Singh, Archana, Kumar Pal, Jitendra, Pandit, Awadhesh, Kumar Singh, Pradeep, Kumar Mahato, Ajay, Dogra, Vivek, Gaikwad, Kishor, Raj Sharma, Tilak, Mohapatra, Trilochan, Kumar Singh, Nagendra, Causse, Mathilde, Rothan, Christophe, Schiex, Thomas, Noirot, Céline, Bellec, Arnaud, Klopp, Christophe, Delalande, Corinne, Berges, Hélène, Mariette, Jérôme, Frasse, Pierre, Vautrin, Sonia, Zouine, Mohamed, Latché, Alain, Rousseau, Christine, Regad, Farid, Pech, Jean-Claude, Philippot, Murielle, Bouzayen, Mondher, Pericard, Pierre, Osorio, Sonia, Fernandez del Carmen, Asunción, Monforte, Antonio, Granell, Antonio, Fernandez-Muñoz, Rafael, Conte, Mariana, Lichtenstein, Gabriel, Carrari, Fernando, De Bellis, Gianluca, Fuligni, Fabio, Peano, Clelia, Grandillo, Silvana, Termolino, Pasquale, Pietrella, Marco, Fantini, Elio, Falcone, Giulia, Fiore, Alessia, Giuliano, Giovanni, Lopez, Loredana, Facella, Paolo, Perrotta, Gaetano, Daddiego, Loretta, Bryan, Glenn, Orozco, Modesto, Pastor, Xavier, Torrents, David, van Schriek, Marco G. M., Feron, Richard M.C., van Oeveren, Jan, de Heer, Peter, daPonte, Lorena, Jacobs-Oomen, Saskia, Cariaso, Mike, Prins, Marcel, van Eijk, Michiel J. T., Janssen, Antoine, van Haaren, Mark J. J., Jo, Sung-Hwan, Kim, Jungeun, Kwon, Suk-Yoon, Kim, Sangmi, Koo, Dal-Hoe, Lee, Sanghyeob, Hur, Cheol-Goo, Clouser, Christopher, Rico, Alain, Hallab, Asis, Gebhardt, Christiane, Klee, Kathrin, Jöcker, Anika, Warfsmann, Jens, Göbel, Ulrike, Kawamura, Shingo, Yano, Kentaro, Sherman, Jamie D., Fukuoka, Hiroyuki, Negoro, Satomi, Bhutty, Sarita, Chowdhury, Parul, Chattopadhyay, Debasis, Datema, Erwin, Smit, Sandra, Schijlen, Elio G. W. M., van de Belt, Jose, van Haarst, Jan C., Peters, Sander A., van Staveren, Marjo J., Henkens, Marleen H. C., Mooyman, Paul J. W., Hesselink, Thamara, van Ham, Roeland C. H. J., Jiang, Guoyong, Droege, Marcus, Choi, Doil, Kang, Byung-Cheol, Dong Kim, Byung, Park, Minkyu, Kim, Seungill, Yeom, Seon-In, Lee, Yong-Hwan, Choi, Yang-Do, Li, Guangcun, Gao, Jianwei, Liu, Yongsheng, Huang, Shengxiong, Fernandez-Pedrosa, Victoria, Collado, Carmen, Zuñiga, Sheila, Wang, Guoping, Cade, Rebecca, Dietrich, Robert A., Rogers, Jane, Knapp, Sandra, Fei, Zhangjun, White, Ruth A., Thannhauser, Theodore W., Giovannoni, James J., Angel Botella, Miguel, Gilbert, Louise, Gonzalez, Ramon, Luis Goicoechea, Jose, Yu, Yeisoo, Kudrna, David, Collura, Kristi, Wissotski, Marina, Wing, Rod, Schoof, Heiko, Meyers, Blake C., Bala Gurazada, Aishwarya, Green, Pamela J., Mathur, Saloni, Vyas, Shailendra, Solanke, Amolkumar U., Kumar, Rahul, Gupta, Vikrant, Sharma, Arun K., Khurana, Paramjit, Khurana, Jitendra P., Tyagi, Akhilesh K., Dalmay, Tamas, Mohorianu, Irina, Walts, Brandon, Chamala, Srikar, Brad Barbazuk, W., Li, Jingping, Guo, Hui, Lee, Tae-Ho, Wang, Yupeng, Zhang, Dong, Paterson, Andrew H., Wang, Xiyin, Tang, Haibao, Barone, Amalia, Luisa Chiusano, Maria, Raffaella Ercolano, Maria, D’Agostino, Nunzio, Di Filippo, Miriam, Traini, Alessandra, Sanseverino, Walter, Frusciante, Luigi, Seymour, Graham B., Elharam, Mounir, Fu, Ying, Hua, Axin, Kenton, Steven, Lewis, Jennifer, Lin, Shaoping, Najar, Fares, Lai, Hongshing, Qin, Baifang, Qu, Chunmei, Shi, Ruihua, White, Douglas, White, James, Xing, Yanbo, Yang, Keqin, Yi, Jing, Yao, Ziyun, Zhou, Liping, Roe, Bruce A., Vezzi, Alessandro, D’Angelo, Michela, Zimbello, Rosanna, Schiavon, Riccardo, Caniato, Elisa, Rigobello, Chiara, Campagna, Davide, Vitulo, Nicola, Valle, Giorgio, Nelson, David R., De Paoli, Emanuele, Szinay, Dora, de Jong, Hans H., Bai, Yuling, Visser, Richard G. F., Klein Lankhorst, René M., Beasley, Helen, McLaren, Karen, Nicholson, Christine, Riddle, Claire, and Gianese, Giulio

Published
2012
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28. De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes

Author

Hufford, Matthew B., primary, Seetharam, Arun S., additional, Woodhouse, Margaret R., additional, Chougule, Kapeel M., additional, Ou, Shujun, additional, Liu, Jianing, additional, Ricci, William A., additional, Guo, Tingting, additional, Olson, Andrew, additional, Qiu, Yinjie, additional, Coletta, Rafael Della, additional, Tittes, Silas, additional, Hudson, Asher I., additional, Marand, Alexandre P., additional, Wei, Sharon, additional, Lu, Zhenyuan, additional, Wang, Bo, additional, Tello-Ruiz, Marcela K., additional, Piri, Rebecca D., additional, Wang, Na, additional, Kim, Dong won, additional, Zeng, Yibing, additional, O’Connor, Christine H., additional, Li, Xianran, additional, Gilbert, Amanda M., additional, Baggs, Erin, additional, Krasileva, Ksenia V., additional, Portwood, John L., additional, Cannon, Ethalinda K.S., additional, Andorf, Carson M., additional, Manchanda, Nancy, additional, Snodgrass, Samantha J., additional, Hufnagel, David E., additional, Jiang, Qiuhan, additional, Pedersen, Sarah, additional, Syring, Michael L., additional, Kudrna, David A., additional, Llaca, Victor, additional, Fengler, Kevin, additional, Schmitz, Robert J., additional, Ross-Ibarra, Jeffrey, additional, Yu, Jianming, additional, Gent, Jonathan I., additional, Hirsch, Candice N., additional, Ware, Doreen, additional, and Dawe, R. Kelly, additional

Published
2021
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29. A chromosome‐scale assembly of allotetraploid Brassica juncea (AABB) elucidates comparative architecture of the A and B genomes

Author

Paritosh, Kumar, primary, Yadava, Satish Kumar, additional, Singh, Priyansha, additional, Bhayana, Latika, additional, Mukhopadhyay, Arundhati, additional, Gupta, Vibha, additional, Bisht, Naveen Chandra, additional, Zhang, Jianwei, additional, Kudrna, David A., additional, Copetti, Dario, additional, Wing, Rod A., additional, Reddy Lachagari, Vijaya Bhasker, additional, Pradhan, Akshay Kumar, additional, and Pental, Deepak, additional

Published
2020
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30. Highly accurate long-read HiFi sequencing data for five complex genomes

Author

Hon, Ting, primary, Mars, Kristin, additional, Young, Greg, additional, Tsai, Yu-Chih, additional, Karalius, Joseph W., additional, Landolin, Jane M., additional, Maurer, Nicholas, additional, Kudrna, David, additional, Hardigan, Michael A., additional, Steiner, Cynthia C., additional, Knapp, Steven J., additional, Ware, Doreen, additional, Shapiro, Beth, additional, Peluso, Paul, additional, and Rank, David R., additional

Published
2020
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31. Evolution and diversity of the wild rice Oryza officinalis complex, across continents genome types, and ploidy levels

Author

Shenton, Matt, primary, Kobayashi, Masaaki, primary, Terashima, Shin, primary, Ohyanagi, Hajime, primary, Copetti, Dario, primary, Hernández-Hernández, Tania, primary, Zhang, Jianwei, primary, Ohmido, Nobuko, primary, Fujita, Masahiro, primary, Toyoda, Atsushi, primary, Ikawa, Hiroshi, primary, Fujiyama, Asao, primary, Furuumi, Hiroyasu, primary, Miyabayashi, Toshie, primary, Kubo, Takahiko, primary, Kudrna, David, primary, Wing, Rod, primary, Yano, Kentaro, primary, Nonomura, Ken-ichi, primary, Sato, Yutaka, primary, and Kurata, Nori, primary

Published
2020
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32. Additional file 1 of Gapless assembly of maize chromosomes using long-read technologies

Author

Jianing Liu, Seetharam, Arun S., Kapeel Chougule, Shujun Ou, Swentowsky, Kyle W., Gent, Jonathan I., Llaca, Victor, Woodhouse, Margaret R., Manchanda, Nancy, Presting, Gernot G., Kudrna, David A., Magdy Alabady, Hirsch, Candice N., Fengler, Kevin A., Ware, Doreen, Michael, Todd P., Hufford, Matthew B., and Dawe, R. Kelly

Abstract

Additional file 1: Figure S1. Workflow for the B73-Ab10 assembly pipeline. Figure S2. Complementation of PacBio assembly gaps by Nanopore contigs. Figure S3. The alignment of BAC-based assemblies of B73 centromeres to the merged assembly in optical map format. Table S1. Assembly statistics and gaps in B73-Ab10 assemblies. Table S2. Accuracy of genome assemblies as assessed by comparison to Bionano maps. Table S3. Coordinates and composition of centromeres defined by CENH3 ChIP-seq in the B73-Ab10 assembly. Table S4. CENH3 enrichment and mappability of Illumina reads in active centromeres. Table S5. Repetitive components in B73-Ab10 assemblies. Table S6. Composition of CentC arrays. Table S7. Composition of knob180 and TR-1 knobs. Table S8. Gene and transposon distributions in the Ab10 haplotype and corresponding N10 regions.

Published
2020
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33. Mental and Ontological Simulacra: Non-Rationality and Non-Reality in Works by Philip K. Dick

Author

Kudrna, David, Roraback, Erik Sherman, and Veselá, Pavla

Subjects
Reality shifting|Multiplicity|Simulacra|Gilles Deleuze|Focalization|Focalizing perspective|Narrative reality|Non-reality|Non-rationality|We Can Build You|Martian Time-Slip|Clans of the Alphane Moon, Posun reality|Multiplicita|Simulakra|Gilles Deleuze|Fokalizace|Fokalizační perspektiva|Narativní realita|Ne-reálno|Ne-racionalita|Dokážeme vás stvořit|Marsovský skluz v čase|Klany Alfanského měsíce
Abstract

This thesis offers a model for the underlying architecture of the narrative reality in science-fiction works by Philip K. Dick, arguing that Dick's fictional worlds are grounded in the pervasive metamorphosis - the overarching perception of the shifting - of the narrative fabric operating under the conditions of non-rationality and non-reality. The hyphenated coinages conveniently stand for the paradigms of the reality and mental configurations in PKD subverting the seemingly natural dichotomizing oppositions and hierarchies of the real/unreal and the rational/irrational. Bringing in Gilles Deleuze's ontology of difference, this thesis explains the non-rationality and non-reality of Dick's worlds in Deleuzian terms as, firstly, inducing the perception of fictional reality as realizing the innate potential of being by the perpetual becoming of being in multiplicity and, secondly, engendering - in the vein of Deleuzian simulacra - the impossibility of apprehending and categorizing fictional reality unequivocally. The thesis considers and evaluates the underlying assumptions and claims common to various approaches to the subject of reality in PKD's fictions in order to provide the essential context for the following development of the theoretical basis for non-rationality and non-reality shifting....

Published
2020

34. Additional file 3 of Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries

Author

Paiva, Jorge AP, Prat, Elisa, Vautrin, Sonia, Santos, Mauro D, San-Clemente, Hélène, Brommonschenkel, Sérgio, Fonseca, Paulo GS, Grattapaglia, Dario, Song, Xiang, Ammiraju, Jetty SS, Kudrna, David, Wing, Rod A, Freitas, Ana T, Bergès, Hélène, and Grima-Pettenati, Jacqueline

Subjects
food and beverages
Abstract

Additional file 3:Screening of the E. grandis BAC libraries for chloroplast and mitochondria genomes. Primers used for PCR amplification of organelles specific probes. (PDF 27 KB)

Published
2020
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35. Additional file 2 of Gapless assembly of maize chromosomes using long-read technologies

Author

Jianing Liu, Seetharam, Arun S., Kapeel Chougule, Shujun Ou, Swentowsky, Kyle W., Gent, Jonathan I., Llaca, Victor, Woodhouse, Margaret R., Manchanda, Nancy, Presting, Gernot G., Kudrna, David A., Magdy Alabady, Hirsch, Candice N., Fengler, Kevin A., Ware, Doreen, Michael, Todd P., Hufford, Matthew B., and Dawe, R. Kelly

Abstract

Additional file 2. Review history.

Published
2020
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36. Additional file 1 of Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries

Author

Paiva, Jorge AP, Prat, Elisa, Vautrin, Sonia, Santos, Mauro D, San-Clemente, Hélène, Brommonschenkel, Sérgio, Fonseca, Paulo GS, Grattapaglia, Dario, Song, Xiang, Ammiraju, Jetty SS, Kudrna, David, Wing, Rod A, Freitas, Ana T, Bergès, Hélène, and Grima-Pettenati, Jacqueline

Abstract

Additional file 1:BAC sequences characteristics. (PDF 30 KB)

Published
2020
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37. Additional file 7 of Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries

Author

Paiva, Jorge AP, Prat, Elisa, Vautrin, Sonia, Santos, Mauro D, San-Clemente, Hélène, Brommonschenkel, Sérgio, Fonseca, Paulo GS, Grattapaglia, Dario, Song, Xiang, Ammiraju, Jetty SS, Kudrna, David, Wing, Rod A, Freitas, Ana T, Bergès, Hélène, and Grima-Pettenati, Jacqueline

Subjects
Data_FILES
Abstract

Authors’ original file for figure 2

Published
2020
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39. Additional file 8 of Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries

Author

Paiva, Jorge AP, Prat, Elisa, Vautrin, Sonia, Santos, Mauro D, San-Clemente, Hélène, Brommonschenkel, Sérgio, Fonseca, Paulo GS, Grattapaglia, Dario, Song, Xiang, Ammiraju, Jetty SS, Kudrna, David, Wing, Rod A, Freitas, Ana T, Bergès, Hélène, and Grima-Pettenati, Jacqueline

Subjects
Data_FILES
Abstract

Authors’ original file for figure 3

Published
2020
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40. Additional file 6 of Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries

Author

Paiva, Jorge AP, Prat, Elisa, Vautrin, Sonia, Santos, Mauro D, San-Clemente, Hélène, Brommonschenkel, Sérgio, Fonseca, Paulo GS, Grattapaglia, Dario, Song, Xiang, Ammiraju, Jetty SS, Kudrna, David, Wing, Rod A, Freitas, Ana T, Bergès, Hélène, and Grima-Pettenati, Jacqueline

Subjects
Data_FILES
Abstract

Authors’ original file for figure 1

Published
2020
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42. Additional file 9 of Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries

Author

Paiva, Jorge AP, Prat, Elisa, Vautrin, Sonia, Santos, Mauro D, San-Clemente, Hélène, Brommonschenkel, Sérgio, Fonseca, Paulo GS, Grattapaglia, Dario, Song, Xiang, Ammiraju, Jetty SS, Kudrna, David, Wing, Rod A, Freitas, Ana T, Bergès, Hélène, and Grima-Pettenati, Jacqueline

Subjects
Data_FILES
Abstract

Authors’ original file for figure 4

Published
2020
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43. Additional file of Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries

Author

Paiva, Jorge AP, Prat, Elisa, Vautrin, Sonia, Santos, Mauro D, San-Clemente, Hélène, Brommonschenkel, Sérgio, Fonseca, Paulo GS, Grattapaglia, Dario, Song, Xiang, Ammiraju, Jetty SS, Kudrna, David, Wing, Rod A, Freitas, Ana T, Bergès, Hélène, and Grima-Pettenati, Jacqueline

Subjects
technology, industry, and agriculture, food and beverages, macromolecular substances, complex mixtures
Abstract

Additional file of Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries

Published
2020
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44. Additional file 5 of Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries

Author

Paiva, Jorge AP, Prat, Elisa, Vautrin, Sonia, Santos, Mauro D, San-Clemente, Hélène, Brommonschenkel, Sérgio, Fonseca, Paulo GS, Grattapaglia, Dario, Song, Xiang, Ammiraju, Jetty SS, Kudrna, David, Wing, Rod A, Freitas, Ana T, Bergès, Hélène, and Grima-Pettenati, Jacqueline

Subjects
ComputingMethodologies_PATTERNRECOGNITION, ComputingMethodologies_DOCUMENTANDTEXTPROCESSING
Abstract

Additional file 5:E. grandis chloroplast genome annotation pipeline. (PDF 64 KB)

Published
2020
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48. A global assembly of cotton ESTs

Author

Udall, Joshua A., Hatfield, Jamie, Sickler, Brad A., Taliercio, Earl, Allen, Randell, Schulze, Stefan R., Dennis, Elizabeth S., Wendel, Jonathan F., Swanson, Jordan M., Yeisu Yu, Wilkins, Thea A., Turley, Ricky, Deshui Zhang, Pierce, Margaret L., Kudrna, David, Haller, Karl, Yingru Wu, Jin Ying Guo, Mcfadden, Helen, Haigler, Candace, Essenberg, Margaret, Rod Wing, Rapp, Ryan A., Dowd, Caitriona, Xiao Ya Chen, Payton, Paxton, Wilkerson, Curtis, Kim, HyeRan, Paterson, Andrew H., Sparks, Michael E., Arpat, Aladdin B., Scheffler, Jodi, Klueva, Natalya, Jinfeng Suo, Llewellyn, Danny J., and Soderlund, Cari

Subjects
Nucleotides -- Chemical properties, Allopolyploid -- Research, Health
Abstract

Almost 185,000 Gossypium EST sequences comprising > 94,800,000 nucleotides were amassed from 30 cDNA libraries constructed from a variety of tissues and organs under a range of conditions. The assembly and information collected provided a framework for future investigation of cotton functional and evolutionary genomics.

Published
2006

50. MOESM1 of Genome sequence of the model rice variety KitaakeX

Author

Jain, Rashmi, Jenkins, Jerry, Shengqiang Shu, Mawsheng Chern, Martin, Joel, Copetti, Dario, Duong, Phat, Pham, Nikki, Kudrna, David, Talag, Jayson, Schackwitz, Wendy, Lipzen, Anna, Dilworth, David, Bauer, Diane, Grimwood, Jane, Nelson, Catherine, Xing, Feng, Weibo Xie, Barry, Kerrie, Wing, Rod, Schmutz, Jeremy, Guotian Li, and Ronald, Pamela

Subjects
food and beverages
Abstract

Additional file 1: Supplementary Methods: Sequencing, genome assembly and construction of pseudomolecule chromosomes, and BAC library construction. Table S1. Genomic libraries included in the Oryza sativa (KitaakeX) genome assembly and their respective assembled sequence coverage levels in the final release. Table S2. PACBIO library statistics for single pass yield of the 42 chips included in the Oryza sativa (KitaakeX) genome assembly and their respective assembled sequence coverage levels. Table S3. Summary statistics of the output of the SuperNova whole genome shotgun assembly prior to integration with the PACBIO assembly. Table S4. Summary statistics of the raw output of the MECAT whole genome shotgun assembly. Figure S1-S12. Syntenic Japonica sequence placements on the Oryza sativa (var. KitaakeX) chromosomes. Each figure shows one chromosome. Table S5. Final summary assembly statistics for chromosome scale assembly Figure S13. Dot plot of BAC clone 119,492 on a region of Chr_02. Figure S14. Dot plot of BAC clone 120,743 on a region of Chr_12. Figure S15. Dot plot of BAC clone 119,503 in a region of Chr_06. Table S6. KitaakeX BAC libraries used for genome assembly and construction of pseudomolecule chromosomes. For Figures S1-S12, plot of the marker placements for each chromosome is shown.

Published
2019
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