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12 results on '"Kryukov, Ivan"'

1. Environmental and genetic predictors of human cardiovascular ageing

Author

Shah, Mit, de A. Inácio, Marco H., Lu, Chang, Schiratti, Pierre-Raphaël, Zheng, Sean L., Clement, Adam, de Marvao, Antonio, Bai, Wenjia, King, Andrew P., Ware, James S., Wilkins, Martin R., Mielke, Johanna, Elci, Eren, Kryukov, Ivan, McGurk, Kathryn A., Bender, Christian, Freitag, Daniel F., and O’Regan, Declan P.

Published
2023
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2. Deep learning on resting electrocardiogram to identify impaired heart rate recovery

Author

Diamant, Nathaniel, Di Achille, Paolo, Weng, Lu-Chen, Lau, Emily S., Khurshid, Shaan, Friedman, Samuel, Reeder, Christopher, Singh, Pulkit, Wang, Xin, Sarma, Gopal, Ghadessi, Mercedeh, Mielke, Johanna, Elci, Eren, Kryukov, Ivan, Eilken, Hanna M., Derix, Andrea, Ellinor, Patrick T., Anderson, Christopher D., Philippakis, Anthony A., Batra, Puneet, Lubitz, Steven A., and Ho, Jennifer E.

Published
2022
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3. Fermi liquid, clustering, and structure factor in dilute warm nuclear matter

Author

Roepke, Gerd, Voskresensky, Dmitri, Kryukov, Ivan, and Blaschke, David

Subjects
Nuclear Theory
Abstract

Properties of nuclear systems at subsaturation densities can be obtained from different approaches. We demonstrate the use of the density autocorrelation function which is related to the isothermal compressibility and, after integration, to the equation of state. This way we connect the Landau Fermi liquid theory well elaborated in nuclear physics with the approaches to dilute nuclear matter describing cluster formation. A quantum statistical approach is presented, based on the cluster decomposition of the polarization function. The fundamental quantity to be calculated is the dynamic structure factor. Comparing with the Landau Fermi liquid theory which is reproduced in lowest approximation, the account of bound state formation and continuum correlations gives the correct low-density result as described by the second virial coefficient and by the mass action law (nuclear statistical equilibrium). Going to higher densities, the inclusion of medium effects is more involved compared with other quantum statistical approaches, but the relation to the Landau Fermi liquid theory gives a promising approach to describe not only thermodynamic but also collective excitations and non-equilibrium properties of nuclear systems in a wide region of the phase diagram., Comment: 26 pages, 9 figures, 3 tables

Published
2017
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4. Activation of CD8+ T Cells in Chronic Obstructive Pulmonary Disease Lung

Author

Villaseñor-Altamirano, Ana B., primary, Jain, Dhawal, additional, Jeong, Yunju, additional, Menon, Jaivardhan A., additional, Kamiya, Mari, additional, Haider, Hibah, additional, Manandhar, Reshmi, additional, Sheikh, Muhammad Dawood Amir, additional, Athar, Humra, additional, Merriam, Louis T., additional, Ryu, Min Hyung, additional, Sasaki, Takanori, additional, Castaldi, Peter J., additional, Rao, Deepak A., additional, Sholl, Lynette M., additional, Vivero, Marina, additional, Hersh, Craig P., additional, Zhou, Xiaobo, additional, Veerkamp, Justus, additional, Yun, Jeong H., additional, Kim, Edy Y., additional, Koch, Markus, additional, Arduini, Alessandro, additional, Cernecka, Hana, additional, Schmidt, Nicole, additional, Laux-Biehlmann, Alexis, additional, Brockschnieder, Damian, additional, Cong, Xiaofei, additional, Engler, Anna, additional, Ibrahim, Mahmoud, additional, Kryukov, Ivan, additional, Kumawat, Kuldeep, additional, Lang, T., additional, Leathurby, Yelena, additional, Lin, Xin, additional, Meding, Joerg, additional, Neideck, Carlos, additional, Obraztsova, Kseniya, additional, Pavuluri, C., additional, Platzk, Magdalena, additional, Smith, Patrick, additional, Sohler, Florian, additional, Srivastava, Salil, additional, Srinivasa, P., additional, Strunz, Tobias, additional, Sylvia, Jody, additional, Vaas, Lea, additional, Zink, Alex, additional, Zhang, Lingyao, additional, Zeng, L., additional, Silverman, Edwin, additional, Carey, Vincent, additional, Castaldi, Peter, additional, Cho, Michael, additional, DeMeo, Dawn, additional, Hersh, Craig, additional, Hobbs, Brian, additional, Moll, Matthew, additional, Rijhwani, Heena, additional, Yun, Jeong, additional, Levy, Bruce D., additional, Tesfaigzi, Yohannes, additional, Bai, Yan, additional, Baron, Rebecca, additional, Doyle, Tracy, additional, El-Chemaly, Souheil, additional, Fredenburgh, Laura, additional, Hunninghake, G. Matt, additional, Krishnamoorthy, Nandini, additional, Mebratu, Yohannes, additional, Perrella, Mark, additional, Quintero, Joselyn Rojas, additional, Negasi, Zerihun, additional, Rahman, Mizanur, additional, Tassew, Dereje, additional, Sharma, Nirmal, additional, Tamura, Tomoyoshi, additional, Villaseñor-Altamirano, Ana B., additional, Medoff, Benjamin, additional, Abe, Elizabeth, additional, Black, Katherine, additional, Hardin, Corey, additional, Knipe, Rachel, additional, Shea, Barry, additional, Spiney, Jill, additional, Albsuharif, Mahaa, additional, Giacona, Francesca, additional, Jayaswai, Armin, additional, Keras, Greg, additional, Lee, Sool, additional, Liu, Jianyuan, additional, Pavuluri, Chandan, additional, Pham, Betty, additional, Saliba, Samuel, additional, Srivastava, Pooja, additional, Wang, Yichao, additional, and Xu, Shuang, additional

Published
2023
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5. On the genes, genealogies, and geographies of Quebec

Author

Anderson-Trocmé, Luke, primary, Nelson, Dominic, additional, Zabad, Shadi, additional, Diaz-Papkovich, Alex, additional, Kryukov, Ivan, additional, Baya, Nikolas, additional, Touvier, Mathilde, additional, Jeffery, Ben, additional, Dina, Christian, additional, Vézina, Hélène, additional, Kelleher, Jerome, additional, and Gravel, Simon, additional

Published
2023
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7. Environmental and genetic predictors of human cardiovascular ageing

Author

Shah, Mit, primary, Inácio, Marco H. de A., additional, Lu, Chang, additional, Schiratti, Pierre-Raphaël, additional, Zheng, Sean L., additional, Clement, Adam, additional, Bai, Wenjia, additional, King, Andrew P., additional, Ware, James S., additional, Wilkins, Martin R., additional, Mielke, Johanna, additional, Elci, Eren, additional, Kryukov, Ivan, additional, McGurk, Kathryn A., additional, Bender, Christian, additional, Freitag, Daniel F., additional, and O’Regan, Declan P., additional

Published
2022
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10. FirebrowseR: an R client to the Broad Institute's Firehose Pipeline

Author

Deng, Mario, Braegelmann, Johannes, Kryukov, Ivan, Saraiva-Agostinho, Nuno, Perner, Sven, Deng, Mario, Braegelmann, Johannes, Kryukov, Ivan, Saraiva-Agostinho, Nuno, and Perner, Sven

Abstract

With its Firebrowse service (http://firebrowse.org/) the Broad Institute is making large-scale multi-platform omics data analysis results publicly available through a Representational State Transfer (REST) Application Programmable Interface (API). Querying this database through an API client from an arbitrary programming environment is an essential task, allowing other developers and researchers to focus on their analysis and avoid data wrangling. Hence, as a first result, we developed a workflow to automatically generate, test and deploy such clients for rapid response to API changes. Its underlying infrastructure, a combination of free and publicly available web services, facilitates the development of API clients. It decouples changes in server software from the client software by reacting to changes in the RESTful service and removing direct dependencies on a specific implementation of an API. As a second result, FirebrowseR, an R client to the Broad Institute's RESTful Firehose Pipeline, is provided as a working example, which is built by the means of the presented workflow. The package's features are demonstrated by an example analysis of cancer gene expression data.

Published
2017

12. The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery

Author

Laing, Roz, primary, Kikuchi, Taisei, additional, Martinelli, Axel, additional, Tsai, Isheng J, additional, Beech, Robin N, additional, Redman, Elizabeth, additional, Holroyd, Nancy, additional, Bartley, David J, additional, Beasley, Helen, additional, Britton, Collette, additional, Curran, David, additional, Devaney, Eileen, additional, Gilabert, Aude, additional, Hunt, Martin, additional, Jackson, Frank, additional, Johnston, Stephanie L, additional, Kryukov, Ivan, additional, Li, Keyu, additional, Morrison, Alison A, additional, Reid, Adam J, additional, Sargison, Neil, additional, Saunders, Gary I, additional, Wasmuth, James D, additional, Wolstenholme, Adrian, additional, Berriman, Matthew, additional, Gilleard, John S, additional, and Cotton, James A, additional

Published
2013
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