8 results on '"Kruithof CA"'
Search Results
2. Sulfato-bridged ECE-pincer palladium(II) complexes: structures in the solid-state and in solution, and catalytic properties.
- Author
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Kruithof CA, Berger A, Dijkstra HP, Soulimani F, Visser T, Lutz M, Spek AL, Gebbink RJ, and van Koten G
- Subjects
- Catalysis, Crystallography, X-Ray, Models, Molecular, Molecular Structure, Solutions, Spectrum Analysis, Raman, Palladium chemistry, Sulfates chemistry
- Abstract
ECE-pincer sulfato palladium complexes (pincer = [C(6)H(3)(CH(2)E)(2)-2,6](-); E = SPh (), SMe (), S(t)Bu (), NMe(2) ()) were synthesized and characterized. In the solid-state (X-ray determinations) and exist as neutral ECE-pincer palladium sulfato complexes with a mu(2)-O,O' bridging sulfato ligand. IR and Raman spectroscopic studies revealed that in the solid-state the complexes can be present as either solely neutral or as a mixture of neutral and ionic species, depending on the preparation and morphology of the solids. In water, ionic complexes with non-coordinating sulfate ions prevail. Preliminary studies of the catalytic activity of in the Suzuki-Miyaura C-C cross-coupling reaction of 3-iodobenzoic acid and sodium tetraphenylborate in water reveal that the C-C cross-coupling product is efficiently formed in good yields at room temperature.
- Published
- 2009
- Full Text
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3. Solid-state structural characterization of cutinase-ECE-pincer-metal hybrids.
- Author
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Rutten L, Wieczorek B, Mannie JP, Kruithof CA, Dijkstra HP, Egmond MR, Lutz M, Klein Gebbink RJ, Gros P, and van Koten G
- Subjects
- Crystallography, X-Ray, Magnetic Resonance Spectroscopy, Molecular Structure, Protein Conformation, Carboxylic Ester Hydrolases chemistry, Models, Chemical, Organometallic Compounds chemistry, Palladium chemistry, Platinum chemistry
- Abstract
The first crystal structures of lipases that have been covalently modified through site-selective inhibition by different organometallic phosphonate-pincer-metal complexes are described. Two ECE-pincer-type d(8)-metal complexes, that is, platinum (1) or palladium (2) with phosphonate esters (ECE = [(EtO)-(O=)P(-O-C(6)H(4)-(NO(2))-4)(-C(3)H(6)-4-(C(6)H(2)-(CH(2)E)(2))](-); E = NMe(2) or SMe) were introduced prior to crystallization and have been shown to bind selectively to the Ser(120) residue in the active site of the lipase cutinase to give cut-1 (platinum) or cut-2 (palladium) hybrids. For all five presented crystal structures, the ECE-pincer-platinum or -palladium head group sticks out of the cutinase molecule and is exposed to the solvent. Depending on the nature of the ECE-pincer-metal head group, the ECE-pincer-platinum and -palladium guests occupy different pockets in the active site of cutinase, with concomitant different stereochemistries on the phosphorous atom for the cut-1 (S(P)) and cut-2 (R(P)) structures. When cut-1 was crystallized under halide-poor conditions, a novel metal-induced dimeric structure was formed between two cutinase-bound pincer-platinum head groups, which are interconnected through a single mu-Cl bridge. This halide-bridged metal dimer shows that coordination chemistry is possible with protein-modified pincer-metal complexes. Furthermore, we could use NCN-pincer-platinum complex 1 as site-selective tool for the phasing of raw protein diffraction data, which shows the potential use of pincer-platinum complex 1 as a heavy-atom derivative in protein crystallography.
- Published
- 2009
- Full Text
- View/download PDF
4. Selective and diagnostic labelling of serine hydrolases with reactive phosphonate inhibitors.
- Author
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Dijkstra HP, Sprong H, Aerts BN, Kruithof CA, Egmond MR, and Klein Gebbink RJ
- Subjects
- Binding Sites, Dansyl Compounds chemistry, Dansyl Compounds metabolism, Hydrolases chemistry, Kinetics, Nitrophenols, Proteome metabolism, Spectrometry, Fluorescence, Substrate Specificity, Affinity Labels chemical synthesis, Affinity Labels metabolism, Hydrolases antagonists & inhibitors, Hydrolases metabolism, Organophosphonates chemical synthesis, Organophosphonates metabolism, Serine metabolism
- Abstract
Reactive phosphonates are important probes to target the active site of serine hydrolases, one of the largest and most diverse family of enzymes. Developing such inhibitory probes is of special importance in activity based protein profiling, a strategy that is increasingly used to gain information about a certain class of enzymes in complex proteosomes. Therefore, gaining detailed information about these inhibition events on the individual protein level is important since it affords information that can be used to fine-tune the probe for a specific task. Here, we report a novel and versatile synthesis protocol to access a variety of functionalised p-nitrophenyl phosphonate (PNPP) inhibitors from a common azide functionalised precursor using click chemistry. The obtained PNPPs were successfully used to covalently label serine hydrolases in their active sites with molecular tags. Furthermore, a model study is described in which we developed straightforward protocols that can be used to study protein inhibition events. Kinetic studies using UV-Vis and fluorescence spectroscopy techniques revealed that these PNPPs possess different inhibition rates for various proteins and were shown to be suitable probes to discriminate between various lipases. Additionally, we demonstrate that PNPPs are highly selective for serine hydrolases, making these probes very interesting as diagnostic or affinity probes for studying proteins in complex proteosomes.
- Published
- 2008
- Full Text
- View/download PDF
5. Palladium-based telomerization of 1,3-butadiene with glycerol using methoxy-functionalized triphenylphosphine ligands.
- Author
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Palkovits R, Nieddu I, Kruithof CA, Klein Gebbink RJM, and Weckhuysen BM
- Subjects
- Catalysis, Ligands, Molecular Structure, Temperature, Time Factors, Butadienes chemistry, Glycerol chemistry, Organophosphorus Compounds chemistry, Palladium chemistry
- Abstract
Glycerol is considered a potential renewable building block for the synthesis of existing as well as new chemicals. A promising route is the telomerization of 1,3-butadiene with glycerol leading to C8 chain ethers of glycerol with applications in, for example, surfactant chemistry. Recently, we reported a new set of palladium-based homogeneous catalytic systems for the telomerization of 1,3-butadiene with glycerol and found that palladium complexes bearing methoxy-functionalized triphenylphosphine ligands are highly active catalysts capable of converting crude glycerol without any significant loss of activity. Herein, we present a detailed account of these investigations by reporting on the influence of the butadiene/glycerol ratio, temperature, and reaction time on product selectivity and activity allowing further optimization of catalyst performance. Maximum activity and yield were reached for high 1,3-butadiene/glycerol ratios at a temperature of 90 degrees C, whereas the selectivity for mono- and diethers of glycerol could be optimized by combining high reaction temperatures and short reaction times with low butadiene/glycerol ratios. Variation of the PdII metal precursors and the metal/ligand ratio showed that palladium precursors with halogen ligands gave unsatisfying results, in contrast to precursors with weakly coordinated ligands such as [Pd(OAc)2] and [Pd(acac)2]. [Pd(dba)2], the only Pd0 precursor tested, gave the best results in terms of activity, which illustrates the importance of the ability to form a Pd0 species in the catalytic cycle. Finally, base addition resulted in a shortening of the reaction time and most likely facilitates the formation of a Pd0 species. Based on these results, we were able to realize the first attempts towards a rational ligand design aimed at a high selectivity for mono- and diether formation.
- Published
- 2008
- Full Text
- View/download PDF
6. Lipase active-site-directed anchoring of organometallics: metallopincer/protein hybrids.
- Author
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Kruithof CA, Casado MA, Guillena G, Egmond MR, van der Kerk-van Hoof A, Heck AJ, Klein Gebbink RJ, and van Koten G
- Subjects
- Binding Sites, Lipase chemistry, Magnetic Resonance Spectroscopy, Organometallic Compounds chemistry, Spectrometry, Mass, Electrospray Ionization, Spectrophotometry, Ultraviolet, Lipase metabolism, Organometallic Compounds metabolism
- Abstract
The work described herein presents a strategy for the regioselective introduction of organometallic complexes into the active site of the lipase cutinase. Nitrophenol phosphonate esters, well known for their lipase inhibitory activity, are used as anchor functionalities and were found to be ideal tools to develop a single-site-directed immobilization method. A small series of phosphonate esters, covalently attached to ECE "pincer"-type d8-metal complexes through a propyl tether (ECE=[C6H3(CH2E)(2)-2,6]-; E=NR2 or SR), were designed and synthesized. Cutinase was treated with these organometallic phosphonate esters and the new metal-complex/protein hybrids were identified as containing exactly one organometallic unit per protein. The organometallic proteins were purified by membrane dialysis and analyzed by ESI-mass spectrometry. The major advantages of this strategy are: 1) one transition metal can be introduced regioselectively and, hence, the metal environment can potentially be fine-tuned; 2) purification procedures are facile due to the use of pre-synthesized metal complexes; and, most importantly, 3) the covalent attachment of robust organometallic pincer complexes to an enzyme is achieved, which will prevent metal leaching from these hybrids. The approach presented herein can be regarded as a tool in the development of regio- and enantioselective catalyst as well as analytical probes for studying enzyme properties (e.g., structure) and, hence, is a "proof-of-principle design" study in enzyme chemistry.
- Published
- 2005
- Full Text
- View/download PDF
7. Shape-persistent nanosize organometallic complexes: synthesis and application in a nanofiltration membrane reactor.
- Author
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Dijkstra HP, Kruithof CA, Ronde N, Van De Coevering R, Ramón DJ, Vogt D, Van Klink GP, and Van Koten G
- Abstract
Shape-persistent multi(NCN-palladium and/or -platinum) complexes having one- (5 and 6), two- (1 and 2), and three-dimensional (3 and 4) geometries were prepared in moderate to good yields. Two different approaches were used to construct the multimetallic materials: (i) the construction of the multisite ligands followed by the permetalation step and (ii) selective and mild one-pot coupling of monometallic buiding blocks to a multifunctional shape-persistent organic core molecule. The first approach was used to prepare the palladated and/or platinated tris- (2) and bis(NCN-pincer) (5) complexes, while the second approach afforded the palladated and platinated octakis- (3) and dodecakis(NCN-pincer) (4) complexes. Complexes 1-6 were subjected to nanofiltration (NF) experiments in order to investigate the influence of rigidity and geometry on the retention of these molecules by NF membranes. For this purpose, the corresponding (NCN-Pt-X)(n)() complexes (1c-4c, 5, and 6) were used since exposing these complexes to sulfur dioxide in solution resulted in the formation of bright orange complexes, allowing the use of UV/vis spectroscopy to accurately determine the concentrations of 1-6 in both retentate and permeate. Using the MPF-60 (MWCO = 400) NF-membrane, retention rates of 82.4 (6), 93.9 (1c), 98.7 (2c), 99.5 (3c), 99.6 (5), and >99.9% (4c) were found, while 2c and 4c in combination with the MPF-50 (MWCO = 700) NF-membrane were retained in 97.6 and 99.9%, respectively. A clear relationship is observed between the dimensions calculated by molecular modeling and the retention rates of 1-6. The one-dimensional bis(pincer-platinum) complex 5, however, shows an unexpectedly high retention rate (99.6%) that can be due to precipitation of the complex in the membrane (clogging of the membrane) and/or to the formation of larger aggregates near the membrane. In addition, comparison of 2 and 4 with flexible nickelated G0- and G1-dendrimers with similar dimensions proved that a high degree of rigidity in the backbone of macromolecular complexes indeed leads to more efficient retentions of these multimetallic materials by NF-membranes.
- Published
- 2003
- Full Text
- View/download PDF
8. Dendritic supports in organic synthesis.
- Author
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Klein Gebbink RJ, Kruithof CA, van Klink GP, and Van Koten G
- Subjects
- Biotechnology methods, Combinatorial Chemistry Techniques methods, Chemistry, Organic methods, Macromolecular Substances, Polymers chemical synthesis
- Abstract
An overview is presented of the recent developments in the use of dendritic supports in organic synthesis. Examples are presented of the application of dendritic supports in both liquid- and solid-phase organic synthesis. In liquid-phase synthesis, soluble dendrimers are used as the substrate support, while in solid-phase synthesis, 'dendronized' insoluble resins are used for this purpose. Selected examples of the synthesis of compound libraries on dendritic supports via combinatorial techniques are discussed.
- Published
- 2002
- Full Text
- View/download PDF
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