350 results on '"Koutsioubas A"'
Search Results
2. Manipulating organic semiconductor morphology with visible light
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Sorensen, Michael Korning, Gertsen, Anders Skovbo, Fornari, Rocco Peter, Zhou, Binbin, Jepsen, Peter Uhd, Stanzani, Edoardo, Yun, Shinhee, Castro, Marcial Fernandez, Schwartzkopf, Matthias, Koutsioubas, Alexandros, de Silva, Piotr, Rodriguez, Moises Espindola, Kuhn, Luise Theil, and Andreasen, Jens Wenzel
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Condensed Matter - Materials Science ,Physics - Chemical Physics - Abstract
We present a method to manipulate the final morphology of roll-to-roll slot-die coated poly(3-hexylthiophene) (P3HT) by optically exciting the p-type polymer in solution while coating. Our results provide a comprehensive picture of the entire knowledge chain, from demonstrating how to apply our method to a fundamental understanding of the changes in morphology and physical properties induced by exciting P3HT while coating. By combining results from density functional theory and molecular dynamics simulations with a variety of X-ray experiments, absorption spectroscopy, and THz spectroscopy, we demonstrate the relationship between morphology and physical properties of the thin film. Specifically, in P3HT films excited with light during deposition, we observe changes in crystallinity and texture with more face-on orientation and increased out-of-plane charge mobility.
- Published
- 2022
3. Tuning spinterface properties in Iron/Fullerene thin films
- Author
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Mallik, Srijani, Mohd., Amir Syed, Koutsioubas, Alexandros, Mattauch, Stefan, Satpati, Biswarup, Bruckel, Thomas, and Bedanta, Subhankar
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Physics - Applied Physics ,Condensed Matter - Mesoscale and Nanoscale Physics - Abstract
In ferromagnetic (FM) metal/organic semiconductor (OSC) heterostructures charge transfer can occur which leads to induction of magnetism in the non-magnetic OSC. This phenomenon has been described by the change in the density of states in the OSC which leads to a finite magnetic moment at the OSC interface and it is called the "spinterface". One of the main motivation in this field of organic spintronics is how to control the magnetic moment in the spinterface. In this regard, there are several open questions such as (i) which combination of FM and OSC can lead to more moment at the spinterface? (ii) Is the thickness of OSC also important? (iii) How does the spinterface moment vary with the FM thickness? (iv) Does the crystalline quality of the FM matters? (v) What is the effect of spinterface on magnetization reversal, domain structure and anisotropy? In this context, we have tried to answer the last three issues in this paper by studying Fe/C$_{60}$ bilayers of variable Fe thickness deposited on Si substrates. We find that both the induced moment and thickness of the spinterface vary proportionally with the Fe thickness. Such behavior is explained in terms of the growth quality of the Fe layer on the native oxide of the Si (100) substrate. The magnetization reversal, domain structure and anisotropy of these bilayer samples were studied and compared with their respective reference samples without having the C$_{60}$ layer. It is observed that the formation of spinterface leads to reduction in uniaxial anisotropy in Fe/C$_{60}$ on Si (100) in comparison to their reference samples.
- Published
- 2019
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4. Preliminary Report on Measurements of Dynamic Contributions to Coherent Neutron Scattering
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Jaksch, Sebastian, Koutsioubas, Alexandros, Mattauch, Stefan, Holderer, Olaf, and Frielinghaus, Henrich
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Physics - Biological Physics ,Condensed Matter - Soft Condensed Matter - Abstract
During this experiment we were testing the hypothesis that standing waves in a phospholipid membrane stack indeed lead to a detectable signal in coherent grazing-incidence small-angle neutron scattering, GISANS. These modes were identified earlier in a previous experiment using grazing-incidence neutron spin-echo spectroscopy, GINSES, (Jaksch, S., Frielinghaus, H. et al. (2017). Nanoscale rheology at solid-complex fluid interfaces. Scientific Reports, 7(1), 4417.). In order to identify those modes and prove conclusively that they were indeed a dynamic mode of the membrane and not a measurement artifact we were following a predetermined protocol: Starting at a physiological temperature (35$^\circ$C), where the modes were previously identified in GINSES, we lowered the temperature of the sample. Dynamic modes as an eigenmode of the lamellar system would under those conditions at least shift the position of any occurring peaks. Possibly below a phase transition temperature (approximately 25$^\circ$C for such a layered system) the peaks due to coherent scattering from a standing wave would vanish altogether, as the standing wave cannot be sustained by thermal excitation at that temperature. Upon reheating, any scattering contribution that is purely due to scattering from a standing wave would reappear. All experiments were performed on the MARIA instrument at MLZ., Comment: 6 pages, 3 figures, experimental report MARIA MLZ
- Published
- 2018
5. Dysmyelination and glycolipid interference caused by phenylalanine in phenylketonuria
- Author
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Rondelli, Valeria, Koutsioubas, Alexandros, Di Cola, Emanuela, Fragneto, Giovanna, Grillo, I., Del Favero, Elena, Colombo, Laura, Cantù, Laura, Brocca, Paola, and Salmona, Mario
- Published
- 2022
- Full Text
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6. Carbohydrate-carbohydrate interaction drives the preferential insertion of dirhamnolipid into glycosphingolipid enriched membranes
- Author
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Rondelli, Valeria, Mollica, Luca, Koutsioubas, Alexandros, Nasir, Nail, Trapp, Marcus, Deboever, Estelle, Brocca, Paola, and Deleu, Magali
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- 2022
- Full Text
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7. A versatile UHV transport and measurement chamber for neutron reflectometry under UHV conditions
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Mohd, A. Syed, Pütter, S., Mattauch, S., Koutsioubas, A., Schneider, H., Weber, A., and Brückel, T.
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Physics - Instrumentation and Detectors - Abstract
We report on a versatile mini ultra-high vacuum (UHV) chamber which is designed to be used on the MAgnetic Reflectometer with high Incident Angle of the J\"ulich Centre for Neutron Science at Heinz Maier-Leibnitz Zentrum in Garching, Germany. Samples are prepared in the adjacent thin film laboratory by molecular beam epitaxy and moved into the compact chamber for transfer without exposure to ambient air. The chamber is based on DN 40 CF flanges and equipped with sapphire view ports, a small getter pump, and a wobble stick, which serves also as sample holder. Here, we present polarized neutron reflectivity measurements which have been performed on Co thin films at room temperature in UHV and in ambient air in a magnetic field of 200 mT and in the Q-range of 0.18 \AA$^{-1}$. The results confirm that the Co film is not contaminated during the polarized neutron reflectivity measurement. Herewith it is demonstrated that the mini UHV transport chamber also works as a measurement chamber which opens new possibilities for polarized neutron measurements under UHV conditions., Comment: 5 pages, 5 figures
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- 2017
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8. Sitosterol and glucosylceramide cooperative transversal and lateral uneven distribution in plant membranes
- Author
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V. Rondelli, A. Koutsioubas, J. Pršić, E. Deboever, J. M. Crowet, L. Lins, and M. Deleu
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Medicine ,Science - Abstract
Abstract The properties of biomembranes depend on the presence, local structure and relative distribution assumed by the thousands of components it is made of. As for animal cells, plant membranes have been demonstrated to be organized in subdomains with different persistence lengths and times. In plant cells, sitosterol has been demonstrated to confer to phospholipid membranes a more ordered structure while among lipids, glycosphingolipids are claimed to form rafts where they tightly pack with sterols. Glucosylceramides are glycosphingolipids involved in plant signalling and are essential for viability of cells and whole plant. The glucosylceramide-sitosterol structural coupling within PLPC membranes is here investigated by Langmuir films, in silico simulations and neutron reflectometry, unveiling that a strong direct interaction between the two molecules exists and governs their lateral and transversal distribution within membrane leaflets. The understanding of the driving forces governing specific molecules clustering and segregation in subdomains, such as glucosylceramide and sitosterol, have an impact on the mechanical properties of biomembranes and could reflect in the other membrane molecules partitioning and activity.
- Published
- 2021
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9. Insertion and activation of functional Bacteriorhodopsin in a floating bilayer
- Author
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Mukhina, Tetiana, Gerelli, Yuri, Hemmerle, Arnaud, Koutsioubas, Alexandros, Kovalev, Kirill, Teulon, Jean-Marie, Pellequer, Jean-Luc, Daillant, Jean, Charitat, Thierry, and Fragneto, Giovanna
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- 2021
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10. Influence of Ibuprofen on Phospholipid Membranes
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Jaksch, Sebastian, Lipfert, Frederik, Koutsioubas, Alexandros, Mattauch, Stefan, Holderer, Olaf, Ivanova, Oxana, Frielinghaus, Henrich, Hertrich, Samira, Fischer, Stefan F., and Nickel, Bert
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Physics - Biological Physics ,Condensed Matter - Soft Condensed Matter ,Physics - Chemical Physics - Abstract
Basic understanding of biological membranes is of paramount importance as these membranes comprise the very building blocks of life itself. Cells depend in their function on a range of properties of the membrane, which are important for the stability and function of the cell, information and nutrient transport, waste disposal and finally the admission of drugs into the cell and also the deflection of bacteria and viruses. We have investigated the influence of ibuprofen on the structure and dynamics of L-alpha-phosphatidylcholine (SoyPC) membranes by means of grazing incidence small-angle neutron scattering (GISANS), neutron reflectometry and grazing incidence neutron spin echo spectroscopy (GINSES). From the results of these experiments we were able to determine that ibuprofen induces a two-step structuring behavior in the SoyPC films, where the structure evolves from the purely lamellar phase for pure SoyPC over a superposition of two hexagonal phases to a purely hexago- nal phase at high concentrations. Additionally, introduction of ibuprofen stiffens the membranes. This behavior may be instrumental in explaining the toxic behavior of ibuprofen in long-term application., Comment: -Improved indexing in Fig. 4e) -changed concentrations to mol% -improved arguments, however conclusions stay unchanged
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- 2014
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11. Membrane stiffness and myelin basic protein binding strength as molecular origin of multiple sclerosis
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Benjamin Krugmann, Aurel Radulescu, Marie-Sousai Appavou, Alexandros Koutsioubas, Laura R. Stingaciu, Martin Dulle, Stephan Förster, and Andreas M. Stadler
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Medicine ,Science - Abstract
Abstract Myelin basic protein (MBP) and its interaction with lipids of the myelin sheath plays an important part in the pathology of multiple sclerosis (MS). Previous studies observed that changes in the myelin lipid composition lead to instabilities and enhanced local curvature of MBP-lipid multilayer structures. We investigated the molecular origin of the instability and found that the diseased lipid membrane has a 25% lower bending rigidity, thus destabilizing smooth $$>1\,$$ > 1 µm curvature radius structures such as in giant unilamellar vesicles. MBP-mediated assembling of lipid bilayers proceeds in two steps, with a slow second step occurring over many days where native lipid membranes assemble into well-defined multilayer structures, whereas diseased lipid membranes form folded assemblies with high local curvature. For both native and diseased lipid mixtures we find that MBP forms dense liquid phases on top of the lipid membranes mediating attractive membrane interactions. Furthermore, we observe MBP to insert into its bilayer leaflet side in case of the diseased lipid mixture, whereas there is no insertion for the native mixture. Insertion increases the local membrane curvature, and could be caused by a decrease of the sphingomyelin content of the diseased lipid mixture. These findings can help to open a pathway to remyelination strategies.
- Published
- 2020
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12. Sitosterol and glucosylceramide cooperative transversal and lateral uneven distribution in plant membranes
- Author
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Rondelli, V., Koutsioubas, A., Pršić, J., Deboever, E., Crowet, J. M., Lins, L., and Deleu, M.
- Published
- 2021
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13. Distortion of surfactant lamellar phases induced by surface roughness
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Nouhi, Shirin, Koutsioubas, Alexandros, Kapaklis, Vassilios, and Rennie, Adrian R.
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- 2020
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14. Peptide pores in lipid bilayers : voltage facilitation pleads for a revised model
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Fadda, G. C., Lairez, D., Guennouni, Z., and Koutsioubas, A.
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Condensed Matter - Soft Condensed Matter - Abstract
We address the problem of antimicrobial peptides that create pores in lipid bilayers, focusing on voltage-temperature dependence of pore opening. Two novel experiments (voltage-clamp with alamethicin as an emblematic representative of these peptides and neutron reflectivity of lipid-monolayer at solid/water interface under electric field) serve to revise the only current theoretical model (H. W. Huang et al.Phys. Rev. Lett., 92, 198304 (2004)). We introduce a general contribution of the electric field as being responsible for an unbalanced tension of the two bilayer leaflets and we claim that the main entropy cost of one pore opening is due to the corresponding "excluded-area" for lipid translation.
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- 2013
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15. Influence of the cross-linker content on adsorbed functionalised microgel coatings
- Author
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Kyrey, Tetyana, Witte, Judith, Pipich, Vitaliy, Feoktystov, Artem, Koutsioubas, Alexandros, Vezhlev, Egor, Frielinghaus, Henrich, von Klitzing, Regine, Wellert, Stefan, and Holderer, Olaf
- Published
- 2019
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16. Crowding effect on helix-coil transition: beyond entropic stabilization
- Author
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Koutsioubas, A., Lairez, D., Combet, S., Fadda, G. C., Longeville, S., and Zalczer, G.
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Condensed Matter - Soft Condensed Matter - Abstract
We report circular dichroism measurements on the helix-coil transition of poly(L-glutamic acid) in solution with polyethylene glycol (PEG) as a crowding agent. Using small angle neutron scattering, PEG solutions have been characterized and found to be well described by the picture of a transient network of mesh size $\xi$, usual for semi-diluted chains in good solvent. We show that the increase of PEG concentration stabilizes the helices and increases the transition temperature. But more unexpectedly we also notice that the increase of crowding agent concentration reduces the mean helix extent at the transition, or in other words reduces its cooperative feature. This result cannot be accounted for by an entropic stabilization mechanism. Comparing the mean length of helices at the transition and the mesh size of the PEG network, our results strongly suggest two regimes: helices shorter or longer than the mesh size.
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- 2011
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17. Slow and remanent electric polarization of adsorbed BSA layer evidenced by neutron reflection
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Koutsioubas, A., Lairez, D., Zalczer, G., and Cousin, F.
- Subjects
Condensed Matter - Soft Condensed Matter - Abstract
Using neutron reflectivity together with an appropriate electrochemical cell, we have studied the effects of transverse electric field on the Bovine Serum Albumin (BSA) monolayer initially adsorbed at the interface of the aqueous solution and a conductive doped-silicon wafer. Depending on the sign of the initial potential, a second layer is adsorbed on top of the first whereas a subsequent reversal of potential has no effect. We show that this behavior reveals the slow and remanent electric polarization of the first BSA layer and suggest an analogy with spin glasses based on the dipolar structure of this protein.
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- 2011
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18. Editorial: Membrane Structure and Dynamics Studied With Neutron Scattering
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O. Holderer, A. Koutsioubas, C. J. Garvey, and T. Nylander
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microemulsions ,lipid membranes ,bending elasticity ,neutron scattering ,neutron spin echo ,reflectometry ,Chemistry ,QD1-999 - Published
- 2021
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19. Adhesion Process of Biomimetic Myelin Membranes Triggered by Myelin Basic Protein
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Benjamin Krugmann, Alexandros Koutsioubas, Luman Haris, Samantha Micciulla, Didier Lairez, Aurel Radulescu, Stephan Förster, and Andreas M. Stadler
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neutron reflectometry ,adhesion energy ,lipid membranes ,myelin basic protein ,vesicle fusion ,random sequential adsorption ,Chemistry ,QD1-999 - Abstract
The myelin sheath—a multi-double-bilayer membrane wrapped around axons—is an essential part of the nervous system which enables rapid signal conduction. Damage of this complex membrane system results in demyelinating diseases such as multiple sclerosis (MS). The process in which myelin is generated in vivo is called myelination. In our study, we investigated the adhesion process of large unilamellar vesicles with a supported membrane bilayer that was coated with myelin basic protein (MBP) using time-resolved neutron reflectometry. Our aim was to mimic and to study the myelination process of membrane systems having either a lipid-composition resembling that of native myelin or that of the standard animal model for experimental autoimmune encephalomyelitis (EAE) which represents MS-like conditions. We were able to measure the kinetics of the partial formation of a double bilayer in those systems and to characterize the scattering length density profiles of the initial and final states of the membrane. The kinetics could be modeled using a random sequential adsorption simulation. By using a free energy minimization method, we were able to calculate the shape of the adhered vesicles and to determine the adhesion energy per MBP. For the native membrane the resulting adhesion energy per MBP is larger than that of the EAE modified membrane type. Our observations might help in understanding myelination and especially remyelination—a process in which damaged myelin is repaired—which is a promising candidate for treatment of the still mostly incurable demyelinating diseases such as MS.
- Published
- 2021
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20. Influence of NaCl on the Structure and Dynamics of Phospholipid Layers
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Sebastian Jaksch, Olaf Holderer, Henrich Frielinghaus, Alexandros Koutsioubas, Piotr Zolnierczuk, Dominic William Hayward, Stephan Förster, and Peter Müller-Buschbaum
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phospholipids ,salt ,dynamics ,structure ,GISANS ,neutron reflectometry ,Physics ,QC1-999 - Abstract
We present a structural and dynamical analysis of the influence of NaCl on multilayer stacks of phospholipids on a solid surface. To this end, multilayer stacks of phospholipids (L-α-phosphatidylcholine, abbreviated as SoyPC) are investigated with neutron reflectometry, grazing-incidence small-angle neutron scattering (GISANS) and grazing-incidence neutron-spin echo spectroscopy (GINSES). We show both that the NaCl influence on the structure is predominantly on water-head group interface and also, that the change in dynamics is restricted to an associated change in the inter-plane viscosity. Using this knowledge, it is possible to model the dynamical behavior of a phospholipid membrane in response to a salt concentration of the solvent using only a single parameter, namely the in-plane viscosity. The excellent agreement with our previously published model also strongly supports the existence of a thermally excited surface mode in phospholipid membranes for close-to-physiological conditions.
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- 2021
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21. Order vs. Disorder: Cholesterol and Omega-3 Phospholipids Determine Biomembrane Organization
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Augusta de Santis, Ernesto Scoppola, Maria Francesca Ottaviani, Alexandros Koutsioubas, Lester C. Barnsley, Luigi Paduano, Gerardino D’Errico, and Irene Russo Krauss
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cholesterol ,phospholipids ,omega-3 ,electron paramagnetic resonance ,small angle neutron scattering ,neutron reflectivity ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Lipid structural diversity strongly affects biomembrane chemico-physical and structural properties in addition to membrane-associated events. At high concentrations, cholesterol increases membrane order and rigidity, while polyunsaturated lipids are reported to increase disorder and flexibility. How these different tendencies balance in composite bilayers is still controversial. In this study, electron paramagnetic resonance spectroscopy, small angle neutron scattering, and neutron reflectivity were used to investigate the structural properties of cholesterol-containing lipid bilayers in the fluid state with increasing amounts of polyunsaturated omega-3 lipids. Either the hybrid 1-stearoyl-2-docosahexaenoyl-sn-glycero-3-phosphocholine or the symmetric 1,2-docosahexaenoyl-sn-glycero-3-phosphocholine were added to the mixture of the naturally abundant 1-palmitoyl-2-oleyl-sn-glycero-3-phosphocholine and cholesterol. Our results indicate that the hybrid and the symmetric omega-3 phospholipids affect the microscopic organization of lipid bilayers differently. Cholesterol does not segregate from polyunsaturated phospholipids and, through interactions with them, is able to suppress the formation of non-lamellar structures induced by the symmetric polyunsaturated lipid. However, this order/disorder balance leads to a bilayer whose structural organization cannot be ascribed to either a liquid ordered or to a canonical liquid disordered phase, in that it displays a very loose packing of the intermediate segments of lipid chains.
- Published
- 2022
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22. Open-Bundle Structure as the Unfolding Intermediate of Cytochrome c′ Revealed by Small Angle Neutron Scattering
- Author
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Takahide Yamaguchi, Kouhei Akao, Alexandros Koutsioubas, Henrich Frielinghaus, and Takamitsu Kohzuma
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protein unfolding ,cytochrome c′ ,small-angle neutron scattering ,open-bundle structure ,Microbiology ,QR1-502 - Abstract
The dynamic structure changes, including the unfolding, dimerization, and transition from the compact to the open-bundle unfolding intermediate structure of Cyt c′, were detected by a small-angle neutron scattering experiment (SANS). The structure of Cyt c′ was changed into an unstructured random coil at pD = 1.7 (Rg = 25 Å for the Cyt c′ monomer). The four-α-helix bundle structure of Cyt c′ at neutral pH was transitioned to an open-bundle structure (at pD ~13), which is given by a numerical partial scattering function analysis as a joint-clubs model consisting of four clubs (α-helices) connected by short loops. The compactly folded structure of Cyt c′ (radius of gyration, Rg = 18 Å for the Cyt c′ dimer) at neutral or mildly alkaline pD transited to a remarkably larger open-bundle structure at pD ~13 (Rg = 25 Å for the Cyt c′ monomer). The open-bundle structure was also supported by ab initio modeling.
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- 2022
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23. Mechanosensing and Sphingolipid-Docking Mediate Lipopeptide-Induced Immunity inArabidopsis
- Author
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Pršić, Jelena, primary, Gilliard, Guillaume, additional, Ibrahim, Heba, additional, Argüelles-Arias, Anthony, additional, Rondelli, Valeria, additional, Crowet, Jean-Marc, additional, Genva, Manon, additional, Luzuriaga-Loaiza, W. Patricio, additional, Deboever, Estelle, additional, Nasir, M. Nail, additional, Lins, Laurence, additional, Mathelie-Guinlet, Marion, additional, Boubsi, Farah, additional, Eschrig, Sabine, additional, Ranf, Stefanie, additional, Dorey, Stephan, additional, Coninck, Barbara De, additional, Nürnberger, Thorsten, additional, Mongrand, Sébastien, additional, Höfte, Monica, additional, Zipfel, Cyril, additional, Dufrêne, Yves F., additional, Koutsioubas, Alexandros, additional, Brocca, Paola, additional, Deleu, Magali, additional, and Ongena, Marc, additional
- Published
- 2023
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24. New tools for grazing incidence neutron scattering experiments open perspectives to study nano-scale tribology mechanisms
- Author
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Frielinghaus, H., Gvaramia, M., Mangiapia, G., Jaksch, S., Ganeva, M., Koutsioubas, A., Mattauch, S., Ohl, M., Monkenbusch, M., and Holderer, O.
- Published
- 2017
- Full Text
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25. Membrane stiffness and myelin basic protein binding strength as molecular origin of multiple sclerosis
- Author
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Krugmann, Benjamin, Radulescu, Aurel, Appavou, Marie-Sousai, Koutsioubas, Alexandros, Stingaciu, Laura R., Dulle, Martin, Förster, Stephan, and Stadler, Andreas M.
- Published
- 2020
- Full Text
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26. Mutually Beneficial Combination of Molecular Dynamics Computer Simulations and Scattering Experiments
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Nebojša Zec, Gaetano Mangiapia, Alex C. Hendry, Robert Barker, Alexandros Koutsioubas, Henrich Frielinghaus, Mario Campana, José Luis Ortega-Roldan, Sebastian Busch, and Jean-François Moulin
- Subjects
neutron reflectometry ,X-ray reflectometry ,small-angle neutron scattering ,small-angle X-ray scattering ,molecular dynamics simulations ,scattering length density profile ,Chemical technology ,TP1-1185 ,Chemical engineering ,TP155-156 - Abstract
We showcase the combination of experimental neutron scattering data and molecular dynamics (MD) simulations for exemplary phospholipid membrane systems. Neutron and X-ray reflectometry and small-angle scattering measurements are determined by the scattering length density profile in real space, but it is not usually possible to retrieve this profile unambiguously from the data alone. MD simulations predict these density profiles, but they require experimental control. Both issues can be addressed simultaneously by cross-validating scattering data and MD results. The strengths and weaknesses of each technique are discussed in detail with the aim of optimizing the opportunities provided by this combination.
- Published
- 2021
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27. Carbohydrate-carbohydrate interaction drives the preferential insertion of dirhamnolipid into glycosphingolipid enriched membranes
- Author
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Valeria Rondelli, Luca Mollica, Alexandros Koutsioubas, Nail Nasir, Marcus Trapp, Estelle Deboever, Paola Brocca, and Magali Deleu
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Biomaterials ,Colloid and Surface Chemistry ,Cell Membrane ,Lipid Bilayers ,ddc:540 ,Glycolipids ,Molecular Dynamics Simulation ,Sugars ,Glycosphingolipids ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials - Abstract
Rhamnolipids (RLs) are among the most important biosurfactants produced by microorganisms, and have been widely investigated because of their multiple biological activities. Their action appears to depend on their structural interference with lipid membranes, therefore several studies have been performed to investigate this aspect. We studied by X-ray scattering, neutron reflectometry and molecular dynamic simulations the insertion of dirhamnolipid (diRL), the most abundant RL, in model cellular membranes made of phospholipids and glycosphingolipids. In our model systems the affinity of diRL to the membrane is highly promoted by the presence of the glycosphingolipids and molecular dynamics simulations unveil that this evidence is related to sugar-sugar attractive interactions at the membrane surface. Our results improve the understanding of the plethora of activities associated with RLs, also opening new perspectives in their selective use for pharmaceutical and cosmetics formulations. Additionally, they shed light on the still debated role of carbohydrate-carbohydrate interactions as driving force for molecular contacts at membrane surface.
- Published
- 2022
28. Manipulating Organic Semiconductor Morphology with Visible Light (Adv. Funct. Mater. 10/2023)
- Author
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Sørensen, Michael Korning, primary, Gertsen, Anders Skovbo, additional, Fornari, Rocco Peter, additional, Zhou, Binbin, additional, Zhang, Xiaotong, additional, Jepsen, Peter Uhd, additional, Stanzani, Edoardo, additional, Yun, Shinhee, additional, Fernández Castro, Marcial, additional, Schwartzkopf, Matthias, additional, Koutsioubas, Alexandros, additional, de Silva, Piotr, additional, Espindola‐Rodriguez, Moises, additional, Kuhn, Luise Theil, additional, and Andreasen, Jens Wenzel, additional
- Published
- 2023
- Full Text
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29. Manipulating Organic Semiconductor Morphology with Visible Light
- Author
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Sørensen, Michael Korning, Gertsen, Anders Skovbo, Fornari, Rocco Peter, Zhou, Binbin, Zhang, Xiaotong, Jepsen, Peter Uhd, Stanzani, Edoardo, Yun, Shinhee, Fernández Castro, Marcial, Schwartzkopf, Matthias, Koutsioubas, Alexandros, de Silva, Piotr, Espindola‐Rodriguez, Moises, Kuhn, Luise Theil, Andreasen, Jens Wenzel, Sørensen, Michael Korning, Gertsen, Anders Skovbo, Fornari, Rocco Peter, Zhou, Binbin, Zhang, Xiaotong, Jepsen, Peter Uhd, Stanzani, Edoardo, Yun, Shinhee, Fernández Castro, Marcial, Schwartzkopf, Matthias, Koutsioubas, Alexandros, de Silva, Piotr, Espindola‐Rodriguez, Moises, Kuhn, Luise Theil, and Andreasen, Jens Wenzel
- Abstract
A method is presented to manipulate the final morphology of roll-to-roll slot-die coated poly(3-hexylthiophene) (P3HT) by optically exciting the p-type polymer in solution while coating. These results provide a comprehensive picture of the entire knowledge chain, from demonstrating how to apply the authors’ method to a fundamental understanding of the changes in morphology and physical properties induced by exciting P3HT while coating. By combining results from density functional theory and molecular dynamics simulations with a variety of X-ray experiments, absorption spectroscopy, and THz spectroscopy, the relationship between morphology and physical properties of the thin film is demonstrated. Specifically, in P3HT films excited with light during deposition, changes in crystallinity and texture with more face-on orientation and increased out-of-plane charge mobility are observed.
- Published
- 2023
30. Mechanosensing and Sphingolipid-Docking Mediate Lipopeptide-Induced Immunity in Arabidopsis
- Author
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Pršić, Jelena, Gilliard, Guillaume, Ibrahim, Heba, Argüelles-Arias, Anthony, Rondelli, Valeria, Crowet, Jean-Marc, Genva, Manon, Luzuriaga-Loaiza, W Patricio, Deboever, Estelle, Nasir, M Nail, Lins, Laurence, Mathelie-Guinlet, Marion, Boubsi, Farah, Eschrig, Sabine, Ranf, Stefanie, Dorey, Stephan, Coninck, Barbara De, Nürnberger, Thorsten, Mongrand, Sébastien, Höfte, Monica, Zipfel, Cyril; https://orcid.org/0000-0003-4935-8583, Dufrêne, Yves F, Koutsioubas, Alexandros, Brocca, Paola, Deleu, Magali, Ongena, Marc, Pršić, Jelena, Gilliard, Guillaume, Ibrahim, Heba, Argüelles-Arias, Anthony, Rondelli, Valeria, Crowet, Jean-Marc, Genva, Manon, Luzuriaga-Loaiza, W Patricio, Deboever, Estelle, Nasir, M Nail, Lins, Laurence, Mathelie-Guinlet, Marion, Boubsi, Farah, Eschrig, Sabine, Ranf, Stefanie, Dorey, Stephan, Coninck, Barbara De, Nürnberger, Thorsten, Mongrand, Sébastien, Höfte, Monica, Zipfel, Cyril; https://orcid.org/0000-0003-4935-8583, Dufrêne, Yves F, Koutsioubas, Alexandros, Brocca, Paola, Deleu, Magali, and Ongena, Marc
- Abstract
Bacteria-derived lipopeptides are immunogenic triggers of host defenses in metazoans and plants. Root-associated rhizobacteria produce cyclic lipopeptides that activate systemically induced resistance (IR) against microbial infection in various plants. How these molecules are perceived by plant cells remains elusive. Here, we reveal that immunity activation inArabidopsis thalianaby the lipopeptide elicitor surfactin is mediated by docking into specific sphingolipid-enriched domains and relies on host membrane deformation and subsequent activation of mechanosensitive ion channels. This mechanism leads to host defense potentiation and resistance to the necrotrophB. cinereabut is distinct from host pattern recognition receptor-mediated immune activation and reminiscent of damage-induced plant immunity.
- Published
- 2023
31. Manipulating organic semiconductor morphology with visible light
- Author
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Andreasen, Jens Wenzel, primary, Sørensen, Michael Korning, additional, Fornari, Rocco Peter, additional, Zhou, Binbin, additional, Zhang, Xiaotong, additional, Jepsen, Peter Uhd, additional, Stanzani, Edoardo, additional, Gertsen, Anders Skovbo, additional, Castro, Marcial Fernández, additional, Schwartzkopf, Matthias, additional, Koutsioubas, Alexandros, additional, de Silva, Piotr, additional, Rodriguez, Moises Espindola, additional, Kuhn, Luise Theil, additional, and Yun, Shinhee, additional
- Published
- 2022
- Full Text
- View/download PDF
32. Effect of amphiphilic environment on the solution structure of mouse TSPO translocator protein
- Author
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Sophie Combet, Françoise Bonneté, Stéphanie Finet, Alexandre Pozza, Christelle Saade, Anne Martel, Alexandros Koutsioubas, Jean-Jacques Lacapère, Laboratoire Léon Brillouin (LLB - UMR 12), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), LLB - Matière molle et biophysique (MMB), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Laboratoire de biologie physico-chimique des protéines membranaires (LBPC-PM (UMR_7099)), Institut de biologie physico-chimique (IBPC (FR_550)), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité), Institut de minéralogie, de physique des matériaux et de cosmochimie (IMPMC), Muséum national d'Histoire naturelle (MNHN)-Institut de recherche pour le développement [IRD] : UR206-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Laboratoire de Mécanique et d'Acoustique [Marseille] (LMA ), Aix Marseille Université (AMU)-École Centrale de Marseille (ECM)-Centre National de la Recherche Scientifique (CNRS), Institut Laue-Langevin (ILL), Jülich Centre for Neutron Science (JCNS), Forschungszentrum Jülich GmbH at Heinz Maier-Leibnitz Zentrum (MLZ), Laboratoire des biomolécules (LBM UMR 7203), Chimie Moléculaire de Paris Centre (FR 2769), École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Ecole Nationale Supérieure de Chimie de Paris - Chimie ParisTech-PSL (ENSCP), Université Paris sciences et lettres (PSL)-Ecole Superieure de Physique et de Chimie Industrielles de la Ville de Paris (ESPCI Paris), Université Paris sciences et lettres (PSL)-Institut de Chimie du CNRS (INC)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Institut de Chimie du CNRS (INC)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Département de Chimie - ENS Paris, Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), and CNRS (MITI 2021 and Tremplin@ INP 2021)
- Subjects
[SDV]Life Sciences [q-bio] ,ddc:540 ,General Medicine ,Biochemistry - Abstract
International audience; The translocator protein (TSPO) is a ubiquitous transmembrane protein of great pharmacological interest thanks to its high affinity to many drug ligands. The only high-resolution 3D-structure known for mammalian TSPO was obtained by NMR for the mouse mTSPO in DPC detergent only in presence of the high-affinity PK 11195 ligand. An atomic structure of free-ligand mTSPO is still missing to better understand the interaction of ligands with mTSPO and their effects on the protein conformation.Here, we decipher the solution structures of the recombinant mTSPO without ligand both in (i) SDS, the detergent used to extract and purify the protein from E. coli inclusion bodies, and (ii) DPC, the detergent used to solve the PK 11195-binding mTSPO NMR structure.We report partially refolded and less flexible mTSPO helices in DPC compared to SDS. Besides, DPC stabilizes the tertiary structure of mTSPO, as shown by a higher intrinsic Trp fluorescence and changes in indole environment.We evaluate by SEC-MALLS that ∼135 SDS and ∼100 DPC molecules are bound to mTSPO. SEC-small-angle X-ray (SAXS) and neutron (SANS) scattering confirm a larger mTSPO-detergent complex in SDS than in DPC. Using the contrast-matching technique in SEC-SANS, we demonstrate that mTSPO conformation is more compact and less flexible in DPC than in SDS. Combining ab initio modeling with SANS, we confirm that mTSPO conformation is less elongated in DPC than in SDS. However, the free-ligand mTSPO envelope in DPC is not as compact as the PK 11195-binding protein NMR structure, the ligand stiffening the protein.
- Published
- 2023
33. Manipulating organic semiconductor morphology with visible light
- Author
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Michael Korning Sørensen, Anders Skovbo Gertsen, Rocco Peter Fornari, Binbin Zhou, Xiaotong Zhang, Peter Uhd Jepsen, Edoardo Stanzani, Shinhee Yun, Marcial Fernández Castro, Matthias Schwartzkopf, Alexandros Koutsioubas, Piotr de Silva, Moises Espindola‐Rodriguez, Luise Theil Kuhn, and Jens Wenzel Andreasen
- Subjects
Roll-to-roll slot-die coating ,Biomaterials ,Organic semiconductors ,Thz spectroscopy ,Density functional theory ,Electrochemistry ,ddc:530 ,Molecular dynamics ,Condensed Matter Physics ,Led light treatment ,Gisaxs/gisans/giwaxs ,Electronic, Optical and Magnetic Materials - Abstract
A method is presented to manipulate the final morphology of roll-to-roll slot-die coated poly(3-hexylthiophene) (P3HT) by optically exciting the p-type polymer in solution while coating. These results provide a comprehensive picture of the entire knowledge chain, from demonstrating how to apply the authors’ method to a fundamental understanding of the changes in morphology and physical properties induced by exciting P3HT while coating. By combining results from density functional theory and molecular dynamics simulations with a variety of X-ray experiments, absorption spectroscopy, and THz spectroscopy, the relationship between morphology and physical properties of the thin film is demonstrated. Specifically, in P3HT films excited with light during deposition, changes in crystallinity and texture with more face-on orientation and increased out-of-plane charge mobility are observed.
- Published
- 2022
34. Observation of iron diffusion in the near-surface region of magnetite at 470 K
- Author
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Steffen Tober, Marcus Creutzburg, Björn Arndt, Konstantin Krausert, Stefan Mattauch, Alexandros Koutsioubas, Sabine Pütter, Amir Syed Mohd, Lukas Volgger, Herbert Hutter, Heshmat Noei, Vedran Vonk, Dieter Lott, and Andreas Stierle
- Subjects
Physics ,QC1-999 - Abstract
Experiments are reported, which allow us to quantify the near-surface cation diffusion in (001) oriented Fe_{3}O_{4} single crystals at temperatures between 470 and 770 K. Thin homoepitaxial films of magnetite, grown using isotopically labeled ^{57}Fe, were investigated by neutron reflectivity and time-of-flight secondary ion mass spectrometry. By heating the thin films in high vacuum to different temperatures for a well-defined time and determining the ^{57}Fe distribution along the surface normal, the diffusion lengths are obtained. For the investigated temperature range, diffusion constants of the order of 10^{−20} m^{2}/s are deduced. These results are important in view of near-surface mass transport induced by oxygen chemical potential differences occurring when magnetite is exposed to different gas atmospheres or by adsorbates.
- Published
- 2020
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- View/download PDF
35. Strain and electric field control of magnetism in La(1--x)SrxMnO3 thin films on ferroelectric BaTiO3 substrates
- Author
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Markus Schmitz, Alexander Weber, Oleg Petracic, Markus Waschk, Paul Zakalek, Stefan Mattauch, Alexandros Koutsioubas, and Thomas Brückel
- Subjects
magneto-electric ,polarized neutron reflectometry ,ferromagnetic ,ferroelectric ,strain-induced coupling ,electric field control ,Science ,Physics ,QC1-999 - Abstract
We report on the observation of strain- and magneto-electric coupling in a system consisting of a thin film of ferromagnetic La _(1− _x _) Sr _x MnO _3 (LSMO, x = 0.5 and 0.3) on a ferroelectric BaTiO _3 (BTO) substrate. Pronounced magnetization steps occur at the BTO structural phase transitions. We associate these steps with a strain induced change of the magnetic anisotropy. Temperature dependent magneto-electric coupling could be evidenced by the magnetic response to an applied AC electric field in all ferroelectric phases of the BTO substrate. In a DC electric field, the magnetization changes are asymmetric with respect to the polarity. Polarized neutron reflectometry hints to oxygen migration as possible mechanism for this asymmetry. It also reveals strain-induced magnetization changes throughout most of the thickness of 252 Å ( x = 0.5) and 360 Å ( x = 0.3), respectively, of the LSMO layer. We conclude that the change of the magnetization depth profile at the interface as previously proposed by ab initio calculations is not the relevant mechanism. Instead strain, oxygen vacancies and frustration at interfacial steps dominate the magnetic response to an applied electric field.
- Published
- 2020
- Full Text
- View/download PDF
36. Multifunctional supramolecular polymer networks as next-generation consolidants for archaeological wood conservation
- Author
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Walsh, Zarah, Janeček, Emma-Rose, Hodgkinson, James T., Sedlmair, Julia, Koutsioubas, Alexandros, Spring, David R., Welch, Martin, Hirschmugl, Carol J., Toprakcioglu, Chris, Nitschke, Jonathan R., Jones, Mark, and Scherman, Oren A.
- Published
- 2014
37. anaklasis: a compact software package for model-based analysis of specular neutron and X-ray reflectometry data sets
- Author
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Alexandros Koutsioubas
- Subjects
fitting software ,neutron reflectometry ,business.industry ,Computer science ,X-ray reflectometry ,Covariance ,Python (programming language) ,General Biochemistry, Genetics and Molecular Biology ,Computer Programs ,Set (abstract data type) ,Software ,ddc:540 ,Neutron reflectometry ,Specular reflection ,Reflectometry ,Focus (optics) ,business ,computer ,Algorithm ,computer.programming_language - Abstract
A new software package (anaklasis) for model-based analysis of specular neutron and X-ray reflectivity is introduced. Key features include a user-friendly compact interfacial model definition scheme and a complete set of methods for co-refining data and estimating parameter uncertainty., anaklasis constitutes a set of open-source Python scripts that facilitate a range of specular neutron and X-ray reflectivity calculations, involving the generation of theoretical curves and the comparison/fitting of interfacial model reflectivity against experimental data sets. The primary focus of the software is twofold: on one hand to offer a more natural framework for model definition, requiring minimum coding literacy, and on the other hand to include advanced analysis methods that have been proposed in recent work. Particular attention is given to the ability to co-refine reflectivity data and to the estimation of model-parameter uncertainty and covariance using bootstrap analysis and Markov chain Monte Carlo sampling. The compactness and simplicity of model definition together with the streamlined analysis do not present a steep learning curve for the user, an aspect that may accelerate the generation of reproducible, easily readable and statistically accurate reports in future neutron and X-ray reflectivity related literature.
- Published
- 2021
38. Dysmyelination and glycolipid interference caused by phenylalanine in phenylketonuria
- Author
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Valeria Rondelli, Alexandros Koutsioubas, Emanuela Di Cola, Giovanna Fragneto, I. Grillo, Elena Del Favero, Laura Colombo, Laura Cantù, Paola Brocca, and Mario Salmona
- Subjects
Phenylalanine ,Amyloidogenic fibres ,GM1 ,Brain ,Water ,General Medicine ,MLV ,Neutron ,X-ray ,Biochemistry ,Settore FIS/07 - Fisica Applicata(Beni Culturali, Ambientali, Biol.e Medicin) ,Structural Biology ,ddc:570 ,Phenylketonurias ,Humans ,Glycolipids ,Molecular Biology - Abstract
Phenylketonuria (PKU) is a metabolic disorder connected to an excess of phenylalanine (Phe) in the blood and tissues, with neurological consequences. The disease's molecular bases seem to be related to the accumulation of Phe at the cell membrane surface. Radiological outcomes in the brain demonstrate decreased water diffusivity in white matter, involving axon dysmyelination of not yet understood origin. We used a biophysical approach and model membranes to extend our knowledge of Phe–membrane interaction by clarifying Phe's propensity to affect membrane structure and dynamics based on lipid composition, with emphasis on modulating cholesterol and glycolipid components to mimic raft domains and myelin sheath membranes. Phe showed affinity for the investigated membrane mimics, mainly affecting the Phe-facing membrane leaflet. The surfaces of our neuronal membrane raft mimics were strong anchoring sites for Phe, showing rigidifying effects. From a therapeutic perspective, we further investigated the role of doxycycline, known to disturb Phe packing, unveiling its action as a competitor in Phe interactions with the membrane, suggesting its potential for treatment in the early stages of PKU. Our results suggest how Phe accumulation in extracellular fluids can impede normal growth of myelin sheaths by interfering with membrane slipping and by remodulating free water and myelin-associated water contents.
- Published
- 2022
39. Effect of amphiphilic environment on the solution structure of mouse TSPO translocator protein
- Author
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Combet, Sophie, primary, Bonneté, Françoise, additional, Finet, Stéphanie, additional, Pozza, Alexandre, additional, Saade, Christelle, additional, Martel, Anne, additional, Koutsioubas, Alexandros, additional, and Lacapère, Jean-Jacques, additional
- Published
- 2022
- Full Text
- View/download PDF
40. Simpler neutron resonator enhances the wave-field for grazing incidence scattering experiments with lower parasitic scattering
- Author
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Kyrey, Tetyana, Witte, Judith, Gvaramia, Manuchar, Wellert, Stefan, Koutsioubas, Alexandros, Mattauch, Stefan, Holderer, Olaf, and Frielinghaus, Henrich
- Published
- 2018
- Full Text
- View/download PDF
41. Mucin Thin Layers: A Model for Mucus-Covered Tissues
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Valeria Rondelli, Emanuela Di Cola, Alexandros Koutsioubas, Jenny Alongi, Paolo Ferruti, Elisabetta Ranucci, and Paola Brocca
- Subjects
mucin ,mucus ,model membrane ,X-ray scattering ,neutron reflectivity ,quartz crystal microbalance ,amphoteric polymers ,polyamidoamine ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
The fate of macromolecules of biological or pharmacological interest that enter the mucus barrier is a current field of investigation. Studies of the interaction between the main constituent of mucus, mucins, and molecules involved in topical transmucoidal drug or gene delivery is a prerequisite for nanomedicine design. We studied the interaction of mucin with the bio-inspired arginine-derived amphoteric polymer d,l-ARGO7 by applying complementary techniques. Small angle X-ray scattering in bulk unveiled the formation of hundreds of nanometer-sized clusters, phase separated from the mucin mesh. Quartz microbalance with dissipation and neutron reflectometry measurements on thin mucin layers deposited on silica supports highlighted the occurrence of polymer interaction with mucin on the molecular scale. Rinsing procedures on both experimental set ups showed that interaction induces alteration of the deposited hydrogel. We succeeded in building up a new significant model for epithelial tissues covered by mucus, obtaining the deposition of a mucin layer 20 Å thick on the top of a glycolipid enriched phospholipid single membrane, suitable to be investigated by neutron reflectometry. The model is applicable to unveil the cross structural details of mucus-covered epithelia in interaction with macromolecules within the Å discreteness.
- Published
- 2019
- Full Text
- View/download PDF
42. Manipulating Organic Semiconductor Morphology with Visible Light (Adv. Funct. Mater. 10/2023)
- Author
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Michael Korning Sørensen, Anders Skovbo Gertsen, Rocco Peter Fornari, Binbin Zhou, Xiaotong Zhang, Peter Uhd Jepsen, Edoardo Stanzani, Shinhee Yun, Marcial Fernández Castro, Matthias Schwartzkopf, Alexandros Koutsioubas, Piotr de Silva, Moises Espindola‐Rodriguez, Luise Theil Kuhn, and Jens Wenzel Andreasen
- Subjects
Biomaterials ,Electrochemistry ,Condensed Matter Physics ,Electronic, Optical and Magnetic Materials - Published
- 2023
43. Modulation of plant plasma membrane structure by exogenous fatty acid hydroperoxide is a potential perception mechanism for their eliciting activity.
- Author
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UCL - SST/LIBST - Louvain Institute of Biomolecular Science and Technology, Deboever, Estelle, Van Aubel, Géraldine, Rondelli, Valeria, Koutsioubas, Alexandros, Mathelie-Guinlet, Marion, Dufrêne, Yves, Ongena, Marc, Lins, Laurence, Van Cutsem, Pierre, Fauconnier, Marie-Laure, Deleu, Magali, UCL - SST/LIBST - Louvain Institute of Biomolecular Science and Technology, Deboever, Estelle, Van Aubel, Géraldine, Rondelli, Valeria, Koutsioubas, Alexandros, Mathelie-Guinlet, Marion, Dufrêne, Yves, Ongena, Marc, Lins, Laurence, Van Cutsem, Pierre, Fauconnier, Marie-Laure, and Deleu, Magali
- Abstract
Oxylipins are lipid-derived molecules that are ubiquitous in eukaryotes and whose functions in plant physiology have been widely reported. They appear to play a major role in plant immunity by orchestrating reactive oxygen species (ROS) and hormone-dependent signalling pathways. The present work focuses on the specific case of fatty acid hydroperoxides (HPOs). Although some studies report their potential use as exogenous biocontrol agents for plant protection, evaluation of their efficiency in planta is lacking and no information is available about their mechanism of action. In this study, the potential of 13(S)-hydroperoxy-(9Z, 11E)-octadecadienoic acid (13-HPOD) and 13(S)-hydroperoxy-(9Z, 11E, 15Z)-octadecatrienoic acid (13-HPOT), as plant defence elicitors and the underlying mechanism of action is investigated. Arabidopsis thaliana leaf resistance to Botrytis cinerea was observed after root application with HPOs. They also activate early immunity-related defence responses, like ROS. As previous studies have demonstrated their ability to interact with plant plasma membranes (PPM), we have further investigated the effects of HPOs on biomimetic PPM structure using complementary biophysics tools. Results show that HPO insertion into PPM impacts its global structure without solubilizing it. The relationship between biological assays and biophysical analysis suggests that lipid amphiphilic elicitors that directly act on membrane lipids might trigger early plant defence events.
- Published
- 2022
44. Order vs. Disorder: Cholesterol and Omega-3 Phospholipids Determine Biomembrane Organization
- Author
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de Santis, Augusta, primary, Scoppola, Ernesto, additional, Ottaviani, Maria Francesca, additional, Koutsioubas, Alexandros, additional, Barnsley, Lester C., additional, Paduano, Luigi, additional, D’Errico, Gerardino, additional, and Russo Krauss, Irene, additional
- Published
- 2022
- Full Text
- View/download PDF
45. Modulation of plant plasma membrane structure by exogenous fatty acid hydroperoxide is a potential perception mechanism for their eliciting activity
- Author
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Deboever, Estelle, primary, Van Aubel, Géraldine, additional, Rondelli, Valeria, additional, Koutsioubas, Alexandros, additional, Mathelie‐Guinlet, Marion, additional, Dufrene, Yves F., additional, Ongena, Marc, additional, Lins, Laurence, additional, Van Cutsem, Pierre, additional, Fauconnier, Marie‐Laure, additional, and Deleu, Magali, additional
- Published
- 2022
- Full Text
- View/download PDF
46. Open-Bundle Structure as the Unfolding Intermediate of Cytochrome c′ Revealed by Small Angle Neutron Scattering
- Author
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Yamaguchi, Takahide, primary, Akao, Kouhei, additional, Koutsioubas, Alexandros, additional, Frielinghaus, Henrich, additional, and Kohzuma, Takamitsu, additional
- Published
- 2022
- Full Text
- View/download PDF
47. Migration Kinetics of Surface Ions in Oxygen‐Deficient Perovskite During Topotactic Transitions (Small 51/2021)
- Author
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Cao, Lei, primary, Petracic, Oleg, additional, Wei, Xian‐Kui, additional, Zhang, Hengbo, additional, Duchoň, Tomáš, additional, Gunkel, Felix, additional, Koutsioubas, Alexandros, additional, Zhernenkov, Kirill, additional, Rushchanskii, Konstantin Z., additional, Hartmann, Heinrich, additional, Wilhelm, Marek, additional, Li, Zichao, additional, Xie, Yufang, additional, He, Suqin, additional, Weber, Moritz L., additional, Veltruská, Kateřina, additional, Stellhorn, Annika, additional, Mayer, Joachim, additional, Zhou, Shengqiang, additional, and Brückel, Thomas, additional
- Published
- 2021
- Full Text
- View/download PDF
48. Open-Bundle Structure as the Unfolding Intermediate of Cytochrome
- Author
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Takahide, Yamaguchi, Kouhei, Akao, Alexandros, Koutsioubas, Henrich, Frielinghaus, and Takamitsu, Kohzuma
- Subjects
Quantitative Biology::Biomolecules ,cytochrome c′ ,small-angle neutron scattering ,Cytochromes c' ,open-bundle structure ,protein unfolding ,Scattering, Small Angle ,Cytochromes c ,Dimerization ,Article - Abstract
The dynamic structure changes, including the unfolding, dimerization, and transition from the compact to the open-bundle unfolding intermediate structure of Cyt c′, were detected by a small-angle neutron scattering experiment (SANS). The structure of Cyt c′ was changed into an unstructured random coil at pD = 1.7 (Rg = 25 Å for the Cyt c′ monomer). The four-α-helix bundle structure of Cyt c′ at neutral pH was transitioned to an open-bundle structure (at pD ~13), which is given by a numerical partial scattering function analysis as a joint-clubs model consisting of four clubs (α-helices) connected by short loops. The compactly folded structure of Cyt c′ (radius of gyration, Rg = 18 Å for the Cyt c′ dimer) at neutral or mildly alkaline pD transited to a remarkably larger open-bundle structure at pD ~13 (Rg = 25 Å for the Cyt c′ monomer). The open-bundle structure was also supported by ab initio modeling.
- Published
- 2021
49. Insertion and activation of functional Bacteriorhodopsin in a floating bilayer
- Author
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Jean-Luc Pellequer, Thierry Charitat, Arnaud Hemmerle, Jean Daillant, Kirill Kovalev, Yuri Gerelli, Jean-Marie Teulon, Alexandros Koutsioubas, Giovanna Fragneto, Tetiana Mukhina, Institut Laue-Langevin (ILL), Institut Charles Sadron (ICS), Université de Strasbourg (UNISTRA)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Matériaux et Nanosciences Grand-Est (MNGE), Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Réseau nanophotonique et optique, Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Centre National de la Recherche Scientifique (CNRS)-Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS), Synchrotron SOLEIL (SSOLEIL), Centre National de la Recherche Scientifique (CNRS), Jülich Centre for Neutron Science (JCNS), Forschungszentrum Jülich GmbH at Heinz Maier-Leibnitz Zentrum (MLZ), Institut de biologie structurale (IBS - UMR 5075), Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche Interdisciplinaire de Grenoble (IRIG), Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Grenoble Alpes (UGA), Grenoble Instruct-ERIC Center (ISBG), Thomas, Frank, ILL, Université de Strasbourg (UNISTRA)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Réseau nanophotonique et optique, Centre National de la Recherche Scientifique (CNRS)-Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Centre National de la Recherche Scientifique (CNRS)-Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Matériaux et nanosciences d'Alsace (FMNGE), Institut de Chimie du CNRS (INC)-Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Université de Strasbourg (UNISTRA)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Polytechnic University of Marche [Ancona, Italy], Jülich Centre for Neutron Science at Heinz Maier-Leibnitz Zentrum, Forschungszentrum Jülich GmbH, 85748 Garching, Institute of Biological Information Processing [Jülich] (IBI-7), Moscow Institute of Physics and Technology [Moscow] (MIPT), Institute of Crystallography [Aachen], and Rheinisch-Westfälische Technische Hochschule Aachen (RWTH)
- Subjects
Materials science ,X-ray reflectometry ,[SDV.BBM.BS] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM] ,Lipid Bilayers ,Protein reconstitution ,Phospholipid ,Bacteriorhodopsin ,Physique [physics]/Matière Condensée [cond-mat] ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Biomaterials ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Bilayer ,Lipid bilayer ,Neutrons ,Neutron reflectometry ,biology ,[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM] ,Membrane ,Quartz crystal microbalance ,021001 nanoscience & nanotechnology ,Transmembrane protein ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,[PHYS.COND.CM-SCM] Physics [physics]/Condensed Matter [cond-mat]/Soft Condensed Matter [cond-mat.soft] ,chemistry ,Bacteriorhodopsins ,ddc:540 ,Quartz Crystal Microbalance Techniques ,biology.protein ,Biophysics ,0210 nano-technology ,[PHYS.COND.CM-SCM]Physics [physics]/Condensed Matter [cond-mat]/Soft Condensed Matter [cond-mat.soft] - Abstract
International audience; The proton pump transmembrane protein bacteriorhodopsin was successfully incorporated into planar floating lipid bilayers in gel and fluid phases, by applying a detergent-mediated incorporation method. The method was optimized on single supported bilayers by using quartz crystal microbalance, atomic force and fluorescence microscopy techniques. Neutron and X-ray reflectometry were used on both single and floating bilayers with the aim of determining the structure and composition of this membrane-protein system before and after protein reconstitution at sub-nanometer resolution. Lipid bilayer integrity and protein activity were preserved upon the reconstitution process. Reversible structural modifications of the membrane, induced by the bacteriorhodopsin functional activity triggered by visible light, were observed and characterized at the nanoscale.
- Published
- 2021
50. MARIA: Magnetic reflectometer with high incident angle
- Author
-
Stefan Mattauch, Alexandros Koutsioubas, and Sabine Pütter
- Subjects
Technology - Abstract
The neutron reflectometer MARIA with polarisation analysis, which is operated by JCNS, Forschungszentrum Jülich, was designed for the investigation of thin magnetic layered structures down to the monolayer scale and lateral structures.
- Published
- 2015
- Full Text
- View/download PDF
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