27 results on '"Koskeridis, Fotios"'
Search Results
2. New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders
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Evangelou, Evangelos, Gao, He, Chu, Congying, Ntritsos, Georgios, Blakeley, Paul, Butts, Andrew R, Pazoki, Raha, Suzuki, Hideaki, Koskeridis, Fotios, Yiorkas, Andrianos M, Karaman, Ibrahim, Elliott, Joshua, Luo, Qiang, Aeschbacher, Stefanie, Bartz, Traci M, Baumeister, Sebastian E, Braund, Peter S, Brown, Michael R, Brody, Jennifer A, Clarke, Toni-Kim, Dimou, Niki, Faul, Jessica D, Homuth, Georg, Jackson, Anne U, Kentistou, Katherine A, Joshi, Peter K, Lemaitre, Rozenn N, Lind, Penelope A, Lyytikäinen, Leo-Pekka, Mangino, Massimo, Milaneschi, Yuri, Nelson, Christopher P, Nolte, Ilja M, Perälä, Mia-Maria, Polasek, Ozren, Porteous, David, Ratliff, Scott M, Smith, Jennifer A, Stančáková, Alena, Teumer, Alexander, Tuominen, Samuli, Thériault, Sébastien, Vangipurapu, Jagadish, Whitfield, John B, Wood, Alexis, Yao, Jie, Yu, Bing, Zhao, Wei, Arking, Dan E, Auvinen, Juha, Liu, Chunyu, Männikkö, Minna, Risch, Lorenz, Rotter, Jerome I, Snieder, Harold, Veijola, Juha, Blakemore, Alexandra I, Boehnke, Michael, Campbell, Harry, Conen, David, Eriksson, Johan G, Grabe, Hans J, Guo, Xiuqing, van der Harst, Pim, Hartman, Catharina A, Hayward, Caroline, Heath, Andrew C, Jarvelin, Marjo-Riitta, Kähönen, Mika, Kardia, Sharon LR, Kühne, Michael, Kuusisto, Johanna, Laakso, Markku, Lahti, Jari, Lehtimäki, Terho, McIntosh, Andrew M, Mohlke, Karen L, Morrison, Alanna C, Martin, Nicholas G, Oldehinkel, Albertine J, Penninx, Brenda WJH, Psaty, Bruce M, Raitakari, Olli T, Rudan, Igor, Samani, Nilesh J, Scott, Laura J, Spector, Tim D, Verweij, Niek, Weir, David R, Wilson, James F, Levy, Daniel, Tzoulaki, Ioanna, Bell, Jimmy D, Matthews, Paul M, Rothenfluh, Adrian, Desrivières, Sylvane, Schumann, Gunter, and Elliott, Paul
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Biomedical and Clinical Sciences ,Biological Psychology ,Epidemiology ,Health Sciences ,Psychology ,Pharmacology and Pharmaceutical Sciences ,Biotechnology ,Substance Misuse ,Brain Disorders ,Mental Health ,Neurosciences ,Serious Mental Illness ,Alcoholism ,Alcohol Use and Health ,Schizophrenia ,Genetics ,Human Genome ,2.1 Biological and endogenous factors ,Aetiology ,Cardiovascular ,Mental health ,Stroke ,Cancer ,Oral and gastrointestinal ,Good Health and Well Being ,Adult ,Aged ,Alcohol Drinking ,Alcoholism ,Brain ,Female ,Genes ,Genetic Predisposition to Disease ,Genome-Wide Association Study ,Humans ,Magnetic Resonance Imaging ,Male ,Mental Disorders ,Middle Aged ,Neuroimaging ,Polymorphism ,Single Nucleotide ,Quantitative Trait Loci ,White People ,Biomedical and clinical sciences ,Health sciences - Abstract
Excessive alcohol consumption is one of the main causes of death and disability worldwide. Alcohol consumption is a heritable complex trait. Here we conducted a meta-analysis of genome-wide association studies of alcohol consumption (g d-1) from the UK Biobank, the Alcohol Genome-Wide Consortium and the Cohorts for Heart and Aging Research in Genomic Epidemiology Plus consortia, collecting data from 480,842 people of European descent to decipher the genetic architecture of alcohol intake. We identified 46 new common loci and investigated their potential functional importance using magnetic resonance imaging data and gene expression studies. We identify genetic pathways associated with alcohol consumption and suggest genetic mechanisms that are shared with neuropsychiatric disorders such as schizophrenia.
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- 2019
3. Pleiotropic genetic architecture and novel loci for C-reactive protein levels
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Koskeridis, Fotios, Evangelou, Evangelos, Said, Saredo, Boyle, Joseph J., Elliott, Paul, Dehghan, Abbas, and Tzoulaki, Ioanna
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- 2022
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4. Author Correction: Genetic analysis of over half a million people characterises C-reactive protein loci
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Said, Saredo, Pazoki, Raha, Karhunen, Ville, Võsa, Urmo, Ligthart, Symen, Bodinier, Barbara, Koskeridis, Fotios, Welsh, Paul, Alizadeh, Behrooz Z., Chasman, Daniel I., Sattar, Naveed, Chadeau-Hyam, Marc, Evangelou, Evangelos, Jarvelin, Marjo-Riitta, Elliott, Paul, Tzoulaki, Ioanna, and Dehghan, Abbas
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- 2022
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5. Genetic analysis of over half a million people characterises C-reactive protein loci
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Said, Saredo, Pazoki, Raha, Karhunen, Ville, Võsa, Urmo, Ligthart, Symen, Bodinier, Barbara, Koskeridis, Fotios, Welsh, Paul, Alizadeh, Behrooz Z., Chasman, Daniel I., Sattar, Naveed, Chadeau-Hyam, Marc, Evangelou, Evangelos, Jarvelin, Marjo-Riitta, Elliott, Paul, Tzoulaki, Ioanna, and Dehghan, Abbas
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- 2022
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6. Associations of genetically predicted fatty acid levels across the phenome: A mendelian randomisation study
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Zagkos, Loukas, Dib, Marie-Joe, Pinto, Rui, Gill, Dipender, Koskeridis, Fotios, Drenos, Fotios, Markozannes, Georgios, Elliott, Paul, Zuber, Verena, Tsilidis, Kostas, Dehghan, Abbas, and Tzoulaki, Ioanna
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Obesity -- Prevention ,Gallstones -- Prevention ,Omega-3 fatty acids -- Health aspects -- Genetic aspects ,Biological sciences - Abstract
Background Fatty acids are important dietary factors that have been extensively studied for their implication in health and disease. Evidence from epidemiological studies and randomised controlled trials on their role in cardiovascular, inflammatory, and other diseases remains inconsistent. The objective of this study was to assess whether genetically predicted fatty acid concentrations affect the risk of disease across a wide variety of clinical health outcomes. Methods and findings The UK Biobank (UKB) is a large study involving over 500,000 participants aged 40 to 69 years at recruitment from 2006 to 2010. We used summary-level data for 117,143 UKB samples (base dataset), to extract genetic associations of fatty acids, and individual-level data for 322,232 UKB participants (target dataset) to conduct our discovery analysis. We studied potentially causal relationships of circulating fatty acids with 845 clinical diagnoses, using mendelian randomisation (MR) approach, within a phenome-wide association study (PheWAS) framework. Regression models in PheWAS were adjusted for sex, age, and the first 10 genetic principal components. External summary statistics were used for replication. When several fatty acids were associated with a health outcome, multivariable MR and MR-Bayesian method averaging (MR-BMA) was applied to disentangle their causal role. Genetic predisposition to higher docosahexaenoic acid (DHA) was associated with cholelithiasis and cholecystitis (odds ratio per mmol/L: 0.76, 95% confidence interval: 0.66 to 0.87). This was supported in replication analysis (FinnGen study) and by the genetically predicted omega-3 fatty acids analyses. Genetically predicted linoleic acid (LA), omega-6, polyunsaturated fatty acids (PUFAs), and total fatty acids (total FAs) showed positive associations with cardiovascular outcomes with support from replication analysis. Finally, higher genetically predicted levels of DHA (0.83, 0.73 to 0.95) and omega-3 (0.83, 0.75 to 0.92) were found to have a protective effect on obesity, which was supported using body mass index (BMI) in the GIANT consortium as replication analysis. Multivariable MR analysis suggested a direct detrimental effect of LA (1.64, 1.07 to 2.50) and omega-6 fatty acids (1.81, 1.06 to 3.09) on coronary heart disease (CHD). MR-BMA prioritised LA and omega-6 fatty acids as the top risk factors for CHD. Although we present a range of sensitivity analyses to the address MR assumptions, horizontal pleiotropy may still bias the reported associations and further evaluation in clinical trials is needed. Conclusions Our study suggests potentially protective effects of circulating DHA and omega-3 concentrations on cholelithiasis and cholecystitis and on obesity, highlighting the need to further assess them as prevention treatments in clinical trials. Moreover, our findings do not support the supplementation of unsaturated fatty acids for cardiovascular disease prevention., Author(s): Loukas Zagkos 1,*, Marie-Joe Dib 1, Rui Pinto 1,2, Dipender Gill 1,3,4, Fotios Koskeridis 5, Fotios Drenos 6,7, Georgios Markozannes 5, Paul Elliott 1,2,8, Verena Zuber 1,2, Kostas Tsilidis [...]
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- 2022
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7. Pleiotropic effects of PLEC and C1Q on Alzheimer’s disease and cardiovascular traits
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Koskeridis, Fotios, primary, Fancy, Nurun, additional, Tan, Pei Fang, additional, Evangelou, Evangelos, additional, Meena, Devendra, additional, Elliott, Paul, additional, Wang, Dennis, additional, Matthews, Paul, additional, Dehghan, Abbas, additional, and Tzoulaki, Ioanna, additional
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- 2024
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8. Omalizumab for the Treatment of Allergic Rhinitis: A Systematic Review and Meta-Analysis
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Tsabouri, Sophia, primary, Ntritsos, Georgios, additional, Koskeridis, Fotios, additional, Evangelou, Evangelos, additional, Olsson, Petter, additional, and Kostikas, Kostas, additional
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- 2024
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9. Awareness, knowledge and trust in the Greek authorities towards COVID-19 pandemic: results from the Epirus Health Study cohort
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Kanellopoulou, Afroditi, Koskeridis, Fotios, Markozannes, Georgios, Bouras, Emmanouil, Soutziou, Chrysa, Chaliasos, Konstantinos, Doumas, Michail T., Sigounas, Dimitrios E., Tzovaras, Vasilios T., Panos, Agapios, Stergiou, Yiolanda, Mellou, Kassiani, Papamichail, Dimitrios, Aretouli, Eleni, Chatzidimitriou, Dimitrios, Chatzopoulou, Fani, Bairaktari, Eleni, Tzoulaki, Ioanna, Evangelou, Evangelos, Rizos, Evangelos C., Ntzani, Evangelia, Vakalis, Konstantinos, and Tsilidis, Konstantinos K.
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- 2021
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10. Use of Genetic Variants Related to Antihypertensive Drugs to Inform on Efficacy and Side Effects
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Gill, Dipender, Georgakis, Marios K., Koskeridis, Fotios, Jiang, Lan, Feng, Qiping, Wei, Wei-Qi, Theodoratou, Evropi, Elliott, Paul, Denny, Joshua C., Malik, Rainer, Evangelou, Evangelos, Dehghan, Abbas, Dichgans, Martin, and Tzoulaki, Ioanna
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- 2019
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11. Treatment With Dupilumab in Patients With Atopic Dermatitis: Systematic Review and Meta-Analysis
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Koskeridis, Fotios, primary, Evangelou, Evangelos, additional, Ntzani, Evangelia E., additional, Kostikas, Konstantinos, additional, and Tsabouri, Sophia, additional
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- 2022
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12. Omalizumab for the Treatment of Allergic Rhinitis: A Systematic Review and Meta-Analysis
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Tsabouri, Sophia, Ntritsos, Georgios, Koskeridis, Fotios, Evangelou, Evangelos, and Kostikas, Konstantinos
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Medicine and Health Sciences ,Clinical Epidemiology ,Public Health - Abstract
Allergic rhinitis (AR), an IgE mediated inflammatory disease, affects a considerable proportion of the general population and significantly impacts quality of life. Omalizumab, a recombinant humanized IgG1 monoclonal antibody against IgE, has been evaluated in several randomized controlled trials for both seasonal and perennial AR. We aimed to assess the efficacy and safety of omalizumab in randomized controlled trials in inadequately controlled AR.
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- 2022
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13. Dupilumab and Atopic Dermatitis: A systematic review and meta-analysis
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Koskeridis, Fotios, Evangelou, Evangelos, Ntzani, Evangelia, Kostikas, Konstantinos, and Tsabouri, Sophia
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body regions ,Epidemiology ,Medicine and Health Sciences ,Clinical Epidemiology ,Public Health - Abstract
Atopic dermatitis is a type 2 chronic skin disorder associated with systemic and psychosocial comorbidities decreasing the quality of life for many patients. Dupilumab, a human monoclonal antibody, is a recent systematic treatment with promising results. We aim to assess the efficacy and safety of dupilumab in patients with atopic dermatitis inadequately controlled by topical treatment in adults, children/adolescents and overall.
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- 2022
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14. Associations of genetically determined iron status across the phenome: A mendelian randomization study
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Gill, Dipender, Benyamin, Beben, Moore, Luke S. P., Monori, Grace, Zhou, Ang, Koskeridis, Fotios, Evangelou, Evangelos, Laffan, Mike, Walker, Ann P., Tsilidis, Konstantinos K., Dehghan, Abbas, Elliott, Paul, Hyppönen, Elina, and Tzoulaki, Ioanna
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Iron (Nutrient) -- Health aspects -- Genetic aspects -- Physiological aspects ,Hypercholesterolemia -- Risk factors -- Demographic aspects -- Genetic aspects ,Cellulitis -- Risk factors -- Demographic aspects -- Genetic aspects ,Genetics ,Iron deficiency anemia ,Ferritin ,Health ,Serine ,Hemochromatosis ,Phenotypes ,Women ,Proteases ,Genetic research ,Genes ,Instruments (Equipment) ,Skin ,Transferrin ,Anemia ,Novels ,Biological sciences - Abstract
Background Iron is integral to many physiological processes, and variations in its levels, even within the normal range, can have implications for health. The objective of this study was to explore the broad clinical effects of varying iron status. Methods and findings Genome-wide association study (GWAS) summary data obtained from 48,972 European individuals (55% female) across 19 cohorts in the Genetics of Iron Status Consortium were used to identify 3 genetic variants (rs1800562 and rs1799945 in the hemochromatosis gene [HFE] and rs855791 in the transmembrane protease serine 6 gene [TMPRSS6]) that associate with increased serum iron, ferritin, and transferrin saturation and decreased transferrin levels, thus serving as instruments for systemic iron status. Phenome-wide association study (PheWAS) of these instruments was performed on 424,439 European individuals (54% female) in the UK Biobank who were aged 40-69 years when recruited from 2006 to 2010, with their genetic data linked to Hospital Episode Statistics (HES) from April, 1995 to March, 2016. Two-sample summary data mendelian randomization (MR) analysis was performed to investigate the effect of varying iron status on outcomes across the human phenome. MR-PheWAS analysis for the 3 iron status genetic instruments was performed separately and then pooled by meta-analysis. Correction was made for testing of multiple correlated phenotypes using a 5% false discovery rate (FDR) threshold. Heterogeneity between MR estimates for different instruments was used to indicate possible bias due to effects of the genetic variants through pathways unrelated to iron status. There were 904 distinct phenotypes included in the MR-PheWAS analyses. After correcting for multiple testing, the 3 genetic instruments for systemic iron status demonstrated consistent evidence of a causal effect of higher iron status on decreasing risk of traits related to anemia (iron deficiency anemia: odds ratio [OR] scaled to a standard deviation [SD] increase in genetically determined serum iron levels 0.72, 95% confidence interval [CI] 0.64-0.81, P = 4 x 10.sup.-8) and hypercholesterolemia (hypercholesterolemia: OR 0.88, 95% CI 0.83-0.93, P = 2 x 10.sup.-5) and increasing risk of traits related to infection of the skin and related structures (cellulitis and abscess of the leg: OR 1.25, 95% CI 1.10-1.42, P = 6 x 10.sup.-4). The main limitations of this study relate to possible bias from pleiotropic effects of the considered genetic variants and misclassification of diagnoses in the HES data. Furthermore, this work only investigated participants with European ancestry, and the findings may not be applicable to other ethnic groups. Conclusions Our findings offer novel, to our knowledge, insight into previously unreported effects of iron status, highlighting a potential protective effect of higher iron status on hypercholesterolemia and a detrimental role on risk of skin and skin structure infections. Given the modifiable and variable nature of iron status, these findings warrant further investigation., Author(s): Dipender Gill 1,*, Beben Benyamin 2,3,4, Luke S. P. Moore 5,6,7, Grace Monori 1, Ang Zhou 2, Fotios Koskeridis 8, Evangelos Evangelou 1,8, Mike Laffan 9, Ann P. Walker [...]
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- 2019
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15. Online supplementary file 1 - Supplemental material for Treatment With Dupilumab in Patients With Atopic Dermatitis: Systematic Review and Meta-Analysis
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Koskeridis, Fotios, Evangelou, Evangelos, Ntzani, Evangelia E., Kostikas, Konstantinos, and Tsabouri, Sophia
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Medicine - Abstract
Supplemental material, Online supplementary file 1, for Treatment With Dupilumab in Patients With Atopic Dermatitis: Systematic Review and Meta-Analysis by Fotios Koskeridis, Evangelos Evangelou, Evangelia E. Ntzani, Konstantinos Kostikas and Sophia Tsabouri in Journal of Cutaneous Medicine and Surgery
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- 2022
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16. Methodology in phenome-wide association studies: a systematic review
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Wang, Lijuan, primary, Zhang, Xiaomeng, additional, Meng, Xiangrui, additional, Koskeridis, Fotios, additional, Georgiou, Andrea, additional, Yu, Lili, additional, Campbell, Harry, additional, Theodoratou, Evropi, additional, and Li, Xue, additional
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- 2021
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17. Additional file 1 of Awareness, knowledge and trust in the Greek authorities towards COVID-19 pandemic: results from the Epirus Health Study cohort
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Kanellopoulou, Afroditi, Koskeridis, Fotios, Markozannes, Georgios, Bouras, Emmanouil, Soutziou, Chrysa, Chaliasos, Konstantinos, Doumas, Michail T., Sigounas, Dimitrios E., Tzovaras, Vasilios T., Panos, Agapios, Stergiou, Yiolanda, Mellou, Kassiani, Papamichail, Dimitrios, Aretouli, Eleni, Chatzidimitriou, Dimitrios, Chatzopoulou, Fani, Bairaktari, Eleni, Tzoulaki, Ioanna, Evangelou, Evangelos, Rizos, Evangelos C., Ntzani, Evangelia, Vakalis, Konstantinos, and Tsilidis, Konstantinos K.
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Additional file 1: Supplementary Figure 1. Categorization of the levels of knowledge regarding the COVID-19 pandemic in Epirus Health Study (EHS).
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- 2021
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18. The Polygenic and Monogenic Basis of Blood Traits and Diseases
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Vuckovic, Dragana, Bao, Erik L, Akbari, Parsa, Lareau, Caleb A, Mousas, Abdou, Jiang, Tao, Chen, Ming-Huei, Raffield, Laura M, Tardaguila, Manuel, Huffman, Jennifer E, Ritchie, Scott C, Megy, Karyn, Ponstingl, Hannes, Penkett, Christopher J, Albers, Patrick K, Wigdor, Emilie M, Sakaue, Saori, Moscati, Arden, Manansala, Regina, Lo, Ken Sin, Qian, Huijun, Akiyama, Masato, Bartz, Traci M, Ben-Shlomo, Yoav, Beswick, Andrew, Bork-Jensen, Jette, Bottinger, Erwin P, Brody, Jennifer A, Van Rooij, Frank JA, Chitrala, Kumaraswamy N, Wilson, Peter WF, Choquet, Hélène, Danesh, John, Di Angelantonio, Emanuele, Dimou, Niki, Ding, Jingzhong, Elliott, Paul, Esko, Tõnu, Evans, Michele K, Felix, Stephan B, Floyd, James S, Broer, Linda, Grarup, Niels, Guo, Michael H, Guo, Qi, Greinacher, Andreas, Haessler, Jeff, Hansen, Torben, Howson, Joanna MM, Huang, Wei, Jorgenson, Eric, Kacprowski, Tim, Kähönen, Mika, Kamatani, Yoichiro, Kanai, Masahiro, Karthikeyan, Savita, Koskeridis, Fotios, Lange, Leslie A, Lehtimäki, Terho, Linneberg, Allan, Liu, Yongmei, Lyytikäinen, Leo-Pekka, Manichaikul, Ani, Matsuda, Koichi, Mohlke, Karen L, Mononen, Nina, Murakami, Yoshinori, Nadkarni, Girish N, Nikus, Kjell, Pankratz, Nathan, Pedersen, Oluf, Preuss, Michael, Psaty, Bruce M, Raitakari, Olli T, Rich, Stephen S, Rodriguez, Benjamin AT, Rosen, Jonathan D, Rotter, Jerome I, Schubert, Petra, Spracklen, Cassandra N, Surendran, Praveen, Tang, Hua, Tardif, Jean-Claude, Ghanbari, Mohsen, Völker, Uwe, Völzke, Henry, Watkins, Nicholas A, Weiss, Stefan, VA Million Veteran Program, Cai, Na, Kundu, Kousik, Watt, Stephen B, Walter, Klaudia, Zonderman, Alan B, Cho, Kelly, Li, Yun, Loos, Ruth JF, Knight, Julian C, Georges, Michel, Stegle, Oliver, Evangelou, Evangelos, Okada, Yukinori, Roberts, David J, Inouye, Michael, Johnson, Andrew D, Auer, Paul L, Astle, William J, Reiner, Alexander P, Butterworth, Adam S, Ouwehand, Willem H, Lettre, Guillaume, Sankaran, Vijay G, Soranzo, Nicole, Ritchie, Scott [0000-0002-8454-9548], Megy, Karyn [0000-0002-2826-3879], Danesh, John [0000-0003-1158-6791], Di Angelantonio, Emanuele [0000-0001-8776-6719], Kundu, Kousik [0000-0002-1019-8351], Inouye, Michael [0000-0001-9413-6520], Astle, William [0000-0001-8866-6672], Butterworth, Adam [0000-0002-6915-9015], Ouwehand, Willem [0000-0002-7744-1790], Soranzo, Nicole [0000-0003-1095-3852], and Apollo - University of Cambridge Repository
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Male ,UK Biobank ,Multifactorial Inheritance ,polygenic risk ,rare disease ,Polymorphism, Single Nucleotide ,hematopoiesis ,splicing ,Phenotype ,fine-mapping ,blood ,chromatin ,Humans ,genetics ,Female ,Gene Regulatory Networks ,Genetic Predisposition to Disease ,omnigenic ,Genome-Wide Association Study - Abstract
Blood cells play essential roles in human health, underpinning physiological processes such as immunity, oxygen transport, and clotting, which when perturbed cause a significant global health burden. Here we integrate data from UK Biobank and a large-scale international collaborative effort, including data for 563,085 European ancestry participants, and discover 5,106 new genetic variants independently associated with 29 blood cell phenotypes covering a range of variation impacting hematopoiesis. We holistically characterize the genetic architecture of hematopoiesis, assess the relevance of the omnigenic model to blood cell phenotypes, delineate relevant hematopoietic cell states influenced by regulatory genetic variants and gene networks, identify novel splice-altering variants mediating the associations, and assess the polygenic prediction potential for blood traits and clinical disorders at the interface of complex and Mendelian genetics. These results show the power of large-scale blood cell trait GWAS to interrogate clinically meaningful variants across a wide allelic spectrum of human variation.
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- 2020
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19. Awareness, knowledge and trust in the Greek authorities towards COVID-19 pandemic: results from the Epirus Health Study cohort
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Kanellopoulou, Afroditi, primary, Koskeridis, Fotios, additional, Markozannes, Georgios, additional, Bouras, Emmanouil, additional, Soutziou, Chrysa, additional, Chaliasos, Konstantinos, additional, Doumas, Michail T, additional, Sigounas, Dimitrios E, additional, Tzovaras, Vasilios T, additional, Panos, Agapios, additional, Stergiou, Yiolanda, additional, Mellou, Kassiani, additional, Papamichail, Dimitrios, additional, Aretouli, Eleni, additional, Chatzidimitriou, Dimitrios, additional, Chatzopoulou, Fani, additional, Bairaktari, Eleni, additional, Tzoulaki, Ioanna, additional, Evangelou, Evangelos, additional, Rizos, Evangelos C, additional, Ntzani, Evangelia, additional, Vakalis, Konstantinos, additional, and Tsilidis, Konstantinos K, additional
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- 2020
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20. The Polygenic and Monogenic Basis of Blood Traits and Diseases
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Vuckovic, Dragana, primary, Bao, Erik L., additional, Akbari, Parsa, additional, Lareau, Caleb A., additional, Mousas, Abdou, additional, Jiang, Tao, additional, Chen, Ming-Huei, additional, Raffield, Laura M., additional, Tardaguila, Manuel, additional, Huffman, Jennifer E., additional, Ritchie, Scott C., additional, Megy, Karyn, additional, Ponstingl, Hannes, additional, Penkett, Christopher J., additional, Albers, Patrick K., additional, Wigdor, Emilie M., additional, Sakaue, Saori, additional, Moscati, Arden, additional, Manansala, Regina, additional, Lo, Ken Sin, additional, Qian, Huijun, additional, Akiyama, Masato, additional, Bartz, Traci M., additional, Ben-Shlomo, Yoav, additional, Beswick, Andrew, additional, Bork-Jensen, Jette, additional, Bottinger, Erwin P., additional, Brody, Jennifer A., additional, van Rooij, Frank J.A., additional, Chitrala, Kumaraswamy N., additional, Wilson, Peter W.F., additional, Choquet, Hélène, additional, Danesh, John, additional, Di Angelantonio, Emanuele, additional, Dimou, Niki, additional, Ding, Jingzhong, additional, Elliott, Paul, additional, Esko, Tõnu, additional, Evans, Michele K., additional, Felix, Stephan B., additional, Floyd, James S., additional, Broer, Linda, additional, Grarup, Niels, additional, Guo, Michael H., additional, Guo, Qi, additional, Greinacher, Andreas, additional, Haessler, Jeff, additional, Hansen, Torben, additional, Howson, Joanna M.M., additional, Huang, Wei, additional, Jorgenson, Eric, additional, Kacprowski, Tim, additional, Kähönen, Mika, additional, Kamatani, Yoichiro, additional, Kanai, Masahiro, additional, Karthikeyan, Savita, additional, Koskeridis, Fotios, additional, Lange, Leslie A., additional, Lehtimäki, Terho, additional, Linneberg, Allan, additional, Liu, Yongmei, additional, Lyytikäinen, Leo-Pekka, additional, Manichaikul, Ani, additional, Matsuda, Koichi, additional, Mohlke, Karen L., additional, Mononen, Nina, additional, Murakami, Yoshinori, additional, Nadkarni, Girish N., additional, Nikus, Kjell, additional, Pankratz, Nathan, additional, Pedersen, Oluf, additional, Preuss, Michael, additional, Psaty, Bruce M., additional, Raitakari, Olli T., additional, Rich, Stephen S., additional, Rodriguez, Benjamin A.T., additional, Rosen, Jonathan D., additional, Rotter, Jerome I., additional, Schubert, Petra, additional, Spracklen, Cassandra N., additional, Surendran, Praveen, additional, Tang, Hua, additional, Tardif, Jean-Claude, additional, Ghanbari, Mohsen, additional, Völker, Uwe, additional, Völzke, Henry, additional, Watkins, Nicholas A., additional, Weiss, Stefan, additional, Cai, Na, additional, Kundu, Kousik, additional, Watt, Stephen B., additional, Walter, Klaudia, additional, Zonderman, Alan B., additional, Cho, Kelly, additional, Li, Yun, additional, Loos, Ruth J.F., additional, Knight, Julian C., additional, Georges, Michel, additional, Stegle, Oliver, additional, Evangelou, Evangelos, additional, Okada, Yukinori, additional, Roberts, David J., additional, Inouye, Michael, additional, Johnson, Andrew D., additional, Auer, Paul L., additional, Astle, William J., additional, Reiner, Alexander P., additional, Butterworth, Adam S., additional, Ouwehand, Willem H., additional, Lettre, Guillaume, additional, Sankaran, Vijay G., additional, and Soranzo, Nicole, additional
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- 2020
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21. Omalizumab for the treatment of allergic rhinitis: a systematic review and meta-analysis.
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Tsabouri, Sophia, Ntritsos, Georgios, Koskeridis, Fotios, Evangelou, Evangelos, Olsson, Petter, and Kostikas, Konstantinos
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- 2021
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22. Methodology in phenome-wide association studies: a systematic review.
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Lijuan Wang, Xiaomeng Zhang, Xiangrui Meng, Koskeridis, Fotios, Georgiou, Andrea, Yu, Lili, Campbel, Harry, Theodoratou, Evropi, and Xue Li
- Abstract
Phenome-wide association study (PheWAS) has been increasingly used to identify novel genetic associations across a wide spectrum of phenotypes. This systematic review aims to summarise the PheWAS methodology, discuss the advantages and challenges of PheWAS, and provide potential implications for future PheWAS studies. Medical Literature Analysis and Retrieval System Online (MEDLINE) and Excerpta Medica Database (EMBASE) databases were searched to identify all published PheWAS studies up until 24 April 2021. The PheWAS methodology incorporating how to perform PheWAS analysis and which software/tool could be used, were summarised based on the extracted information. A total of 1035 studies were identified and 195 eligible articles were finally included. Among them, 137 (77.0%) contained 10 000 or more study participants, 164 (92.1%) defined the phenome based on electronic medical records data, 140 (78.7%) used genetic variants as predictors, and 73 (41.0%) conducted replication analysis to validate PheWAS findings and almost all of them (94.5%) received consistent results. The methodology applied in these PheWAS studies was dissected into several critical steps, including quality control of the phenome, selecting predictors, phenotyping, statistical analysis, interpretation and visualisation of PheWAS results, and the workflow for performing a PheWAS was established with detailed instructions on each step. This study provides a comprehensive overview of PheWAS methodology to help practitioners achieve a better understanding of the PheWAS design, to detect understudied or overstudied outcomes, and to direct their research by applying the most appropriate software and online tools for their study data structure. [ABSTRACT FROM AUTHOR]
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- 2021
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23. Genetic variants related to antihypertensive targets inform drug efficacy and side effects
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Gill, Dipender, primary, Georgakis, Marios K., additional, Koskeridis, Fotios, additional, Jiang, Lan, additional, Feng, Qiping, additional, Wei, Wei-Qi, additional, Theodoratou, Evropi, additional, Elliott, Paul, additional, Denny, Joshua C., additional, Malik, Rainer, additional, Evangelou, Evangelos, additional, Dehghan, Abbas, additional, Dichgans, Martin, additional, and Tzoulaki, Ioanna, additional
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- 2018
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24. Genome-wide association and functional studies identify 46 novel loci for alcohol consumption and suggest common genetic mechanisms with neuropsychiatric disorders
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Evangelou, Evangelos, primary, Gao, He, additional, Chu, Congying, additional, Ntritsos, Georgios, additional, Blakeley, Paul, additional, Butts, Andrew R., additional, Pazoki, Raha, additional, Suzuki, Hideaki, additional, Koskeridis, Fotios, additional, Yiorkas, Andrianos M., additional, Karaman, Ibrahim, additional, Elliott, Joshua, additional, Aeschbacher, Stefanie, additional, Bartz, Traci M., additional, Baumeister, Sebastian E., additional, Braund, Peter S., additional, Brown, Michael R., additional, Brody, Jennifer A., additional, Clarke, Toni-Kim, additional, Dimou, Niki, additional, Faul, Jessica D., additional, Homuth, Georg, additional, Jackson, Anne U., additional, Kentistou, Katherine A., additional, Joshi, Peter K., additional, Lemaitre, Rozenn N., additional, Lind, Penelope A., additional, Lyytikäinen, Leo-Pekka, additional, Mangino, Massimo, additional, Milaneschi, Yuri, additional, Nelson, Christopher P., additional, Nolte, Ilja M., additional, Perälä, Mia-Maria, additional, Polasek, Ozren, additional, Porteous, David, additional, Ratliff, Scott M., additional, Smith, Jennifer A., additional, Stančáková, Alena, additional, Teumer, Alexander, additional, Tuominen, Samuli, additional, Thériault, Sébastien, additional, Vangipurapu, Jagadish, additional, Whitfield, John B., additional, Wood, Alexis, additional, Yao, Jie, additional, Yu, Bing, additional, Zhao, Wei, additional, Arking, Dan E., additional, Auvinen, Juha, additional, Liu, Chunyu, additional, Männikkö, Minna, additional, Risch, Lorenz, additional, Rotter, Jerome I., additional, Snieder, Harold, additional, Veijola, Juha, additional, Blakemore, Alexandra I., additional, Boehnke, Michael, additional, Campbell, Harry, additional, Conen, David, additional, Eriksson, Johan G., additional, Grabe, Hans J., additional, Guo, Xiuqing, additional, Harst, Pim van der, additional, Hartman, Catharina A., additional, Hayward, Caroline, additional, Heath, Andrew C., additional, Jarvelin, Marjo-Riitta, additional, Kähönen, Mika, additional, Kardia, Sharon LR, additional, Kühne, Michael, additional, Kuusisto, Johanna, additional, Laakso, Markku, additional, Lahti, Jari, additional, Lehtimäki, Terho, additional, McIntosh, Andrew M., additional, Mohlke, Karen L., additional, Morrison, Alanna C., additional, Martin, Nicholas G., additional, Oldehinkel, Albertine J., additional, Penninx, Brenda WJH, additional, Psaty, Bruce M., additional, Raitakari, Olli T., additional, Rudan, Igor, additional, Samani, Nilesh J., additional, Scott, Laura J., additional, Spector, Tim D., additional, Verweij, Niek, additional, Weir, David R., additional, Wilson, James F., additional, Levy, Daniel, additional, Tzoulaki, Ioanna, additional, Bell, Jimmy D., additional, Matthews, Paul, additional, Rothenfluh, Adrian, additional, Desrivières, Sylvane, additional, Schumann, Gunter, additional, and Elliott, Paul, additional
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- 2018
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25. Use of Genetic Variants Related to Antihypertensive Drugs to Inform on Efficacy and Side Effects
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Gill, Dipender, Georgakis, Marios K., Koskeridis, Fotios, Jiang, Lan, Feng, Qiping, Wei, Wei-Qi, Theodoratou, Evropi, Elliott, Paul, Denny, Joshua C., Malik, Rainer, Evangelou, Evangelos, Dehghan, Abbas, Dichgans, Martin, and Tzoulaki, Ioanna
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pharmacology [Antihypertensive Agents] ,Drug-Related Side Effects and Adverse Reactions ,Pharmacogenomic Variants ,therapeutic use [Antihypertensive Agents] ,Mendelian randomization analysis ,Original Research Articles ,antihypertensive drugs ,genetics [Drug-Related Side Effects and Adverse Reactions] ,ComputingMethodologies_DOCUMENTANDTEXTPROCESSING ,Humans ,ddc:610 ,adverse effects [Antihypertensive Agents] ,Antihypertensive Agents - Abstract
Supplemental Digital Content is available in the text., Background: Drug effects can be investigated through natural variation in the genes for their protein targets. The present study aimed to use this approach to explore the potential side effects and repurposing potential of antihypertensive drugs, which are among the most commonly used medications worldwide. Methods: Genetic proxies for the effect of antihypertensive drug classes were identified as variants in the genes for the corresponding targets that associated with systolic blood pressure at genome-wide significance. Mendelian randomization estimates for drug effects on coronary heart disease and stroke risk were compared with randomized, controlled trial results. A phenome-wide association study in the UK Biobank was performed to identify potential side effects and repurposing opportunities, with findings investigated in the Vanderbilt University biobank (BioVU) and in observational analysis of the UK Biobank. Results: Suitable genetic proxies for angiotensin-converting enzyme inhibitors, β-blockers, and calcium channel blockers (CCBs) were identified. Mendelian randomization estimates for their effect on coronary heart disease and stroke risk, respectively, were comparable to results from randomized, controlled trials against placebo. A phenome-wide association study in the UK Biobank identified an association of the CCB standardized genetic risk score with increased risk of diverticulosis (odds ratio, 1.02 per standard deviation increase; 95% CI, 1.01–1.04), with a consistent estimate found in BioVU (odds ratio, 1.01; 95% CI, 1.00–1.02). Cox regression analysis of drug use in the UK Biobank suggested that this association was specific to nondihydropyridine CCBs (hazard ratio 1.49 considering thiazide diuretic agents as a comparator; 95% CI, 1.04–2.14) but not dihydropyridine CCBs (hazard ratio, 1.04; 95% CI, 0.83–1.32). Conclusions: Genetic variants can be used to explore the efficacy and side effects of antihypertensive medications. The identified potential effect of nondihydropyridine CCBs on diverticulosis risk could have clinical implications and warrants further investigation.
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26. Associations of genetically predicted fatty acid levels across the phenome: A mendelian randomisation study
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Loukas Zagkos, Marie-Joe Dib, Rui Pinto, Dipender Gill, Fotios Koskeridis, Fotios Drenos, Georgios Markozannes, Paul Elliott, Verena Zuber, Kostas Tsilidis, Abbas Dehghan, Ioanna Tzoulaki, Zagkos, Loukas [0000-0002-7700-8102], Dib, Marie-Joe [0000-0001-7591-5684], Pinto, Rui [0000-0002-8527-4873], Gill, Dipender [0000-0001-7312-7078], Koskeridis, Fotios [0000-0002-1253-7556], Drenos, Fotios [0000-0003-2469-5516], Markozannes, Georgios [0000-0001-8481-579X], Elliott, Paul [0000-0002-7511-5684], Dehghan, Abbas [0000-0001-6403-016X], Tzoulaki, Ioanna [0000-0002-4275-9328], and Apollo - University of Cambridge Repository
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Adult ,Male ,Medicine and health sciences ,Docosahexaenoic Acids ,Biology and life sciences ,Bayes Theorem ,Coronary Disease ,General Medicine ,Mendelian Randomization Analysis ,Middle Aged ,Cholelithiasis ,Fatty Acids, Omega-6 ,Fatty Acids, Omega-3 ,Cholecystitis ,Humans ,Female ,Genetic Predisposition to Disease ,Obesity ,Aged ,Research Article - Abstract
Background Fatty acids are important dietary factors that have been extensively studied for their implication in health and disease. Evidence from epidemiological studies and randomised controlled trials on their role in cardiovascular, inflammatory, and other diseases remains inconsistent. The objective of this study was to assess whether genetically predicted fatty acid concentrations affect the risk of disease across a wide variety of clinical health outcomes. Methods and findings The UK Biobank (UKB) is a large study involving over 500,000 participants aged 40 to 69 years at recruitment from 2006 to 2010. We used summary-level data for 117,143 UKB samples (base dataset), to extract genetic associations of fatty acids, and individual-level data for 322,232 UKB participants (target dataset) to conduct our discovery analysis. We studied potentially causal relationships of circulating fatty acids with 845 clinical diagnoses, using mendelian randomisation (MR) approach, within a phenome-wide association study (PheWAS) framework. Regression models in PheWAS were adjusted for sex, age, and the first 10 genetic principal components. External summary statistics were used for replication. When several fatty acids were associated with a health outcome, multivariable MR and MR-Bayesian method averaging (MR-BMA) was applied to disentangle their causal role. Genetic predisposition to higher docosahexaenoic acid (DHA) was associated with cholelithiasis and cholecystitis (odds ratio per mmol/L: 0.76, 95% confidence interval: 0.66 to 0.87). This was supported in replication analysis (FinnGen study) and by the genetically predicted omega-3 fatty acids analyses. Genetically predicted linoleic acid (LA), omega-6, polyunsaturated fatty acids (PUFAs), and total fatty acids (total FAs) showed positive associations with cardiovascular outcomes with support from replication analysis. Finally, higher genetically predicted levels of DHA (0.83, 0.73 to 0.95) and omega-3 (0.83, 0.75 to 0.92) were found to have a protective effect on obesity, which was supported using body mass index (BMI) in the GIANT consortium as replication analysis. Multivariable MR analysis suggested a direct detrimental effect of LA (1.64, 1.07 to 2.50) and omega-6 fatty acids (1.81, 1.06 to 3.09) on coronary heart disease (CHD). MR-BMA prioritised LA and omega-6 fatty acids as the top risk factors for CHD. Although we present a range of sensitivity analyses to the address MR assumptions, horizontal pleiotropy may still bias the reported associations and further evaluation in clinical trials is needed. Conclusions Our study suggests potentially protective effects of circulating DHA and omega-3 concentrations on cholelithiasis and cholecystitis and on obesity, highlighting the need to further assess them as prevention treatments in clinical trials. Moreover, our findings do not support the supplementation of unsaturated fatty acids for cardiovascular disease prevention.
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- 2023
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27. Associations of genetically determined iron status across the phenome: A mendelian randomization study
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Michael Laffan, Dipender Gill, Beben Benyamin, Abbas Dehghan, Ang Zhou, Luke S. P. Moore, Konstantinos K. Tsilidis, Elina Hyppönen, Fotios Koskeridis, Evangelos Evangelou, Ioanna Tzoulaki, Ann P. Walker, Grace Monori, Paul Elliott, Gill, Dipender, Benyamin, Beben, Moore, Luke SP, Monori, Grace, Zhou, Ang, Koskeridis, Fotios, Evangelou, Evangelos, Laffan, Mike, Walker, Ann P, Tsilidis, Konstantinos K, Dehghan, Abbas, Elliot, Paul, Hypponen, Elina, Tzoulaki, Ioanna, and Rahimi, Kazem
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Male ,Bacterial Diseases ,Physiology ,Genome-wide association study ,VARIANTS ,030204 cardiovascular system & hematology ,Pathology and Laboratory Medicine ,DISEASE ,Cohort Studies ,RELEVANCE ,0302 clinical medicine ,Blood serum ,Medicine and Health Sciences ,030212 general & internal medicine ,Prospective Studies ,11 Medical and Health Sciences ,RISK ,medicine.diagnostic_test ,Liver Diseases ,Anemia ,General Medicine ,Hematology ,Middle Aged ,3. Good health ,DEFICIENCY ,Phenotype ,Infectious Diseases ,Hyperlipidemia ,Serum iron ,Medicine ,Female ,Hemochromatosis ,Aplastic Anemia ,Life Sciences & Biomedicine ,Research Article ,Adult ,Skin Infections ,Iron ,Hypercholesterolemia ,Dermatology ,Gastroenterology and Hepatology ,03 medical and health sciences ,Medicine, General & Internal ,Signs and Symptoms ,LIPID-METABOLISM ,Diagnostic Medicine ,General & Internal Medicine ,Mendelian randomization ,medicine ,Genetics ,Humans ,Iron Deficiency Anemia ,Aged ,Science & Technology ,IDENTIFICATION ,Transferrin saturation ,business.industry ,Biology and Life Sciences ,Cellulitis ,INSTRUMENTS ,Mendelian Randomization Analysis ,medicine.disease ,Bone Marrow Failure ,Iron-deficiency anemia ,business ,Biomarkers ,Genome-Wide Association Study - Abstract
Background Iron is integral to many physiological processes, and variations in its levels, even within the normal range, can have implications for health. The objective of this study was to explore the broad clinical effects of varying iron status. Methods and findings Genome-wide association study (GWAS) summary data obtained from 48,972 European individuals (55% female) across 19 cohorts in the Genetics of Iron Status Consortium were used to identify 3 genetic variants (rs1800562 and rs1799945 in the hemochromatosis gene [HFE] and rs855791 in the transmembrane protease serine 6 gene [TMPRSS6]) that associate with increased serum iron, ferritin, and transferrin saturation and decreased transferrin levels, thus serving as instruments for systemic iron status. Phenome-wide association study (PheWAS) of these instruments was performed on 424,439 European individuals (54% female) in the UK Biobank who were aged 40–69 years when recruited from 2006 to 2010, with their genetic data linked to Hospital Episode Statistics (HES) from April, 1995 to March, 2016. Two-sample summary data mendelian randomization (MR) analysis was performed to investigate the effect of varying iron status on outcomes across the human phenome. MR–PheWAS analysis for the 3 iron status genetic instruments was performed separately and then pooled by meta-analysis. Correction was made for testing of multiple correlated phenotypes using a 5% false discovery rate (FDR) threshold. Heterogeneity between MR estimates for different instruments was used to indicate possible bias due to effects of the genetic variants through pathways unrelated to iron status. There were 904 distinct phenotypes included in the MR–PheWAS analyses. After correcting for multiple testing, the 3 genetic instruments for systemic iron status demonstrated consistent evidence of a causal effect of higher iron status on decreasing risk of traits related to anemia (iron deficiency anemia: odds ratio [OR] scaled to a standard deviation [SD] increase in genetically determined serum iron levels 0.72, 95% confidence interval [CI] 0.64–0.81, P = 4 × 10−8) and hypercholesterolemia (hypercholesterolemia: OR 0.88, 95% CI 0.83–0.93, P = 2 × 10−5) and increasing risk of traits related to infection of the skin and related structures (cellulitis and abscess of the leg: OR 1.25, 95% CI 1.10–1.42, P = 6 × 10−4). The main limitations of this study relate to possible bias from pleiotropic effects of the considered genetic variants and misclassification of diagnoses in the HES data. Furthermore, this work only investigated participants with European ancestry, and the findings may not be applicable to other ethnic groups. Conclusions Our findings offer novel, to our knowledge, insight into previously unreported effects of iron status, highlighting a potential protective effect of higher iron status on hypercholesterolemia and a detrimental role on risk of skin and skin structure infections. Given the modifiable and variable nature of iron status, these findings warrant further investigation., Using Mendelian randomization, Dipender Gill and colleagues investigate the clinical implications of iron levels., Author summary Why was this study done? Iron has many vital physiological roles, and variations in its levels can have health implications. In this study, we explored the broad clinical effects of varying iron status. What did the researchers do and find? We used randomly allocated genetic variants related to iron status to study its effects on a broad range of medical outcomes. Genetic variants related to higher iron status were associated with a lower risk of anemia and hypercholesterolemia and a higher risk of skin and skin structure infections. What do these findings mean? Given that iron status can be modified, the novel, to our knowledge, associations with hypercholesterolemia and skin and skin structure infections could have clinical implications. Further research is required to confirm these associations and explore how they can be incorporated towards improving clinical practice.
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- 2019
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