21 results on '"Kosamo S"'
Search Results
2. Identification of persistent and resolving subphenotypes of acute hypoxemic respiratory failure in two independent cohorts
- Author
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Sathe, N. A. (Neha A.), Zelnick, L. R. (Leila R.), Mikacenic, C. (Carmen), Morrell, E. D. (Eric D.), Bhatraju, P. K. (Pavan K.), McNeil, J. B. (J. Brennan), Kosamo, S. (Susanna), Hough, C. L. (Catherine L.), Liles, W. C. (W. Conrad), Ware, L. B. (Lorraine B.), and Wurfel, M. M. (Mark M.)
- Subjects
Mechanical ventilation ,Endophenotypes ,Acute lung injury ,ARDS ,Acute hypoxemic respiratory failure - Abstract
Background: Acute hypoxemic respiratory failure (HRF) is associated with high morbidity and mortality, but its heterogeneity challenges the identification of effective therapies. Defining subphenotypes with distinct prognoses or biologic features can improve therapeutic trials, but prior work has focused on ARDS, which excludes many acute HRF patients. We aimed to characterize persistent and resolving subphenotypes in the broader HRF population. Methods: In this secondary analysis of 2 independent prospective ICU cohorts, we included adults with acute HRF, defined by invasive mechanical ventilation and PaO₂-to-FIO₂ ratio ≤ 300 on cohort enrollment (n = 768 in the discovery cohort and n = 1715 in the validation cohort). We classified patients as persistent HRF if still requiring mechanical ventilation with PaO₂-to-FIO₂ ratio ≤ 300 on day 3 following ICU admission, or resolving HRF if otherwise. We estimated relative risk of 28-day hospital mortality associated with persistent HRF, compared to resolving HRF, using generalized linear models. We also estimated fold difference in circulating biomarkers of inflammation and endothelial activation on cohort enrollment among persistent HRF compared to resolving HRF. Finally, we stratified our analyses by ARDS to understand whether this was driving differences between persistent and resolving HRF. Results: Over 50% developed persistent HRF in both the discovery (n = 386) and validation (n = 1032) cohorts. Persistent HRF was associated with higher risk of death relative to resolving HRF in both the discovery (1.68-fold, 95% CI 1.11, 2.54) and validation cohorts (1.93-fold, 95% CI 1.50, 2.47), after adjustment for age, sex, chronic respiratory illness, and acute illness severity on enrollment (APACHE-III in discovery, APACHE-II in validation). Patients with persistent HRF displayed higher biomarkers of inflammation (interleukin-6, interleukin-8) and endothelial dysfunction (angiopoietin-2) than resolving HRF after adjustment. Only half of persistent HRF patients had ARDS, yet exhibited higher mortality and biomarkers than resolving HRF regardless of whether they qualified for ARDS. Conclusion: Patients with persistent HRF are common and have higher mortality and elevated circulating markers of lung injury compared to resolving HRF, and yet only a subset are captured by ARDS definitions. Persistent HRF may represent a clinically important, inclusive target for future therapeutic trials in HRF.
- Published
- 2021
3. Characterization of nucleic acids from extracellular vesicle-enriched human sweat
- Author
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Bart, G. (Geneviève), Fischer, D. (Daniel), Samoylenko, A. (Anatoliy), Zhyvolozhnyi, A. (Artem), Stehantsev, P. (Pavlo), Miinalainen, I. (Ilkka), Kaakinen, M. (Mika), Nurmi, T. (Tuomas), Singh, P. (Prateek), Kosamo, S. (Susanna), Rannaste, L. (Lauri), Viitala, S. (Sirja), Hiltunen, J. (Jussi), Vainio, S. J. (Seppo J.), Bart, G. (Geneviève), Fischer, D. (Daniel), Samoylenko, A. (Anatoliy), Zhyvolozhnyi, A. (Artem), Stehantsev, P. (Pavlo), Miinalainen, I. (Ilkka), Kaakinen, M. (Mika), Nurmi, T. (Tuomas), Singh, P. (Prateek), Kosamo, S. (Susanna), Rannaste, L. (Lauri), Viitala, S. (Sirja), Hiltunen, J. (Jussi), and Vainio, S. J. (Seppo J.)
- Abstract
Background: The human sweat is a mixture of secretions from three types of glands: eccrine, apocrine, and sebaceous. Eccrine glands open directly on the skin surface and produce high amounts of water-based fluid in response to heat, emotion, and physical activity, whereas the other glands produce oily fluids and waxy sebum. While most body fluids have been shown to contain nucleic acids, both as ribonucleoprotein complexes and associated with extracellular vesicles (EVs), these have not been investigated in sweat. In this study we aimed to explore and characterize the nucleic acids associated with sweat particles. Results: We used next generation sequencing (NGS) to characterize DNA and RNA in pooled and individual samples of EV-enriched sweat collected from volunteers performing rigorous exercise. In all sequenced samples, we identified DNA originating from all human chromosomes, but only the mitochondrial chromosome was highly represented with 100% coverage. Most of the DNA mapped to unannotated regions of the human genome with some regions highly represented in all samples. Approximately 5 % of the reads were found to map to other genomes: including bacteria (83%), archaea (3%), and virus (13%), identified bacteria species were consistent with those commonly colonizing the human upper body and arm skin. Small RNA-seq from EV-enriched pooled sweat RNA resulted in 74% of the trimmed reads mapped to the human genome, with 29% corresponding to unannotated regions. Over 70% of the RNA reads mapping to an annotated region were tRNA, while misc. RNA (18,5%), protein coding RNA (5%) and miRNA (1,85%) were much less represented. RNA-seq from individually processed EV-enriched sweat collection generally resulted in fewer percentage of reads mapping to the human genome (7–45%), with 50–60% of those reads mapping to unannotated region of the genome and 30–55% being tRNAs, and lower percentage of reads being rRNA, LincRNA, misc. RNA, and protein coding RNA. Conclusio
- Published
- 2021
4. Genetic Inference Implicates the FAS Pathway in Systemic Organ Failure
- Author
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Mikacenic, C., primary, Bhatraju, P., additional, Robinson-Cohen, C., additional, Kosamo, S., additional, Fohner, A.E., additional, Dmyterko, V., additional, Long, S.A., additional, Cerosaletti, K., additional, Calfee, C.S., additional, Matthay, M.A., additional, Walley, K.R., additional, Russell, J., additional, Christie, J.D., additional, Meyer, N., additional, Christiani, D.C., additional, and Wurfel, M.M., additional
- Published
- 2020
- Full Text
- View/download PDF
5. Clinical Outcomes in Persistent Hypoxemic Respiratory Failure Among Critically Ill Adults
- Author
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Sathe, N., primary, Zelnick, L.R., additional, Mikacenic, C., additional, Morrell, E.D., additional, Bhatraju, P., additional, Kosamo, S., additional, Katz, R., additional, Hough, C.T.L., additional, Liles, W.C.C., additional, and Wurfel, M.M., additional
- Published
- 2020
- Full Text
- View/download PDF
6. PD-L1 and PD-1 Are Associated with Clinical Outcomes and Alveolar Immune Cell Activation in Acute Respiratory Distress Syndrome.
- Author
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Morrell ED, Holton SE, Wiedeman A, Kosamo S, Mitchem MA, Dmyterko V, Franklin Z, Garay A, Stanaway IB, Liu T, Sathe NA, Mabrey FL, Stapleton RD, Malhotra U, Speake C, Hamerman JA, Pipavath S, Evans L, Bhatraju PK, Long SA, Wurfel MM, and Mikacenic C
- Subjects
- Humans, Male, Female, Middle Aged, Aged, Adult, Bronchoalveolar Lavage Fluid immunology, Pulmonary Alveoli metabolism, Pulmonary Alveoli immunology, Pulmonary Alveoli pathology, Cytokines metabolism, Cytokines blood, Respiratory Distress Syndrome immunology, Respiratory Distress Syndrome blood, Respiratory Distress Syndrome metabolism, B7-H1 Antigen metabolism, B7-H1 Antigen blood, Programmed Cell Death 1 Receptor metabolism
- Abstract
The relationship between the PD-L1 (Programmed Death-Ligand 1)/PD-1 pathway, lung inflammation, and clinical outcomes in acute respiratory distress syndrome (ARDS) is poorly understood. We sought to determine whether PD-L1/PD-1 in the lung or blood is associated with ARDS and associated severity. We measured soluble PD-L1 (sPD-L1) in plasma and lower respiratory tract samples (ARDS1 [ n = 59] and ARDS2 [ n = 78]) or plasma samples alone (ARDS3 [ n = 149]) collected from subjects with ARDS and tested for associations with mortality using multiple regression. We used mass cytometry to measure PD-L1/PD-1 expression and intracellular cytokine staining in cells isolated from BAL fluid ( n = 18) and blood ( n = 16) from critically ill subjects with or without ARDS enrolled from a fourth cohort. Higher plasma concentrations of sPD-L1 were associated with mortality in ARDS1, ARDS2, and ARDS3. In contrast, higher concentrations of sPD-L1 in the lung were either not associated with mortality (ARDS2) or were associated with survival (ARDS1). Alveolar PD-1
POS T cells had more intracellular cytokine staining than PD-1NEG T cells. Subjects without ARDS had a higher ratio of PD-L1POS alveolar macrophages to PD-1POS T cells than subjects with ARDS. We conclude that sPD-L1 may have divergent cellular sources and/or functions in the alveolar versus blood compartments, given distinct associations with mortality. Alveolar leukocyte subsets defined by PD-L1 or PD-1 cell-surface expression have distinct cytokine secretion profiles, and the relative proportions of these subsets are associated with ARDS.- Published
- 2024
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7. Enrichment of sweat-derived extracellular vesicles of human and bacterial origin for biomarker identification.
- Author
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Zhyvolozhnyi A, Samoylenko A, Bart G, Kaisanlahti A, Hekkala J, Makieieva O, Pratiwi F, Miinalainen I, Kaakinen M, Bergman U, Singh P, Nurmi T, Khosrowbadi E, Abdelrady E, Kellokumpu S, Kosamo S, Reunanen J, Röning J, Hiltunen J, and Vainio SJ
- Subjects
- Humans, Sweat metabolism, Biomarkers metabolism, Alginates metabolism, Extracellular Vesicles metabolism, Exosomes metabolism
- Abstract
Sweat contains biomarkers for real-time non-invasive health monitoring, but only a few relevant analytes are currently used in clinical practice. In the present study, we investigated whether sweat-derived extracellular vesicles (EVs) can be used as a source of potential protein biomarkers of human and bacterial origin. Methods: By using ExoView platform, electron microscopy, nanoparticle tracking analysis and Western blotting we characterized EVs in the sweat of eight volunteers performing rigorous exercise. We compared the presence of EV markers as well as general protein composition of total sweat, EV-enriched sweat and sweat samples collected in alginate skin patches. Results: We identified 1209 unique human proteins in EV-enriched sweat, of which approximately 20% were present in every individual sample investigated. Sweat derived EVs shared 846 human proteins (70%) with total sweat, while 368 proteins (30%) were captured by medical grade alginate skin patch and such EVs contained the typical exosome marker CD63. The majority of identified proteins are known to be carried by EVs found in other biofluids, mostly urine. Besides human proteins, EV-enriched sweat samples contained 1594 proteins of bacterial origin. Bacterial protein profiles in EV-enriched sweat were characterized by high interindividual variability, that reflected differences in total sweat composition. Alginate-based sweat patch accumulated only 5% proteins of bacterial origin. Conclusion: We showed that sweat-derived EVs provide a rich source of potential biomarkers of human and bacterial origin. Use of commercially available alginate skin patches selectively enrich for human derived material with very little microbial material collected., Competing Interests: Competing Interests: The authors have declared that no competing interest exists., (© The author(s).)
- Published
- 2024
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8. Single Nucleotide Variant in FAS Associates With Organ Failure and Soluble Fas Cell Surface Death Receptor in Critical Illness.
- Author
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Mikacenic C, Bhatraju P, Robinson-Cohen C, Kosamo S, Fohner AE, Dmyterko V, Long SA, Cerosaletti K, Calfee CS, Matthay MA, Walley KR, Russell JA, Christie JD, Meyer NJ, Christiani DC, and Wurfel MM
- Subjects
- Adult, Aged, Apoptosis, Biomarkers, Female, Genome-Wide Association Study, Genotype, Humans, Intensive Care Units, Male, Middle Aged, Multiple Organ Failure blood, Organ Dysfunction Scores, Polymorphism, Single Nucleotide, fas Receptor blood, Critical Illness epidemiology, Multiple Organ Failure epidemiology, fas Receptor genetics
- Abstract
Objectives: Multiple organ failure in critically ill patients is associated with poor prognosis, but biomarkers contributory to pathogenesis are unknown. Previous studies support a role for Fas cell surface death receptor (Fas)-mediated apoptosis in organ dysfunction. Our objectives were to test for associations between soluble Fas and multiple organ failure, identify protein quantitative trait loci, and determine associations between genetic variants and multiple organ failure., Design: Retrospective observational cohort study., Setting: Four academic ICUs at U.S. hospitals., Patients: Genetic analyses were completed in a discovery (n = 1,589) and validation set (n = 863). Fas gene expression and flow cytometry studies were completed in outpatient research participants (n = 250)., Interventions: None., Measurements and Main Results: In discovery and validation sets of critically ill patients, we tested for associations between enrollment plasma soluble Fas concentrations and Sequential Organ Failure Assessment score on day 3. We conducted a genome-wide association study of plasma soluble Fas (discovery n = 1,042) and carried forward a single nucleotide variant in the FAS gene, rs982764, for validation (n = 863). We further tested whether the single nucleotide variant in FAS (rs982764) was associated with Sequential Organ Failure Assessment score, FAS transcriptional isoforms, and Fas cell surface expression. Higher plasma soluble Fas was associated with higher day 3 Sequential Organ Failure Assessment scores in both the discovery (β = 4.07; p < 0.001) and validation (β = 6.96; p < 0.001) sets. A single nucleotide variant in FAS (rs982764G) was associated with lower plasma soluble Fas concentrations and lower day 3 Sequential Organ Failure Assessment score in meta-analysis (-0.21; p = 0.02). Single nucleotide variant rs982764G was also associated with a lower relative expression of the transcript for soluble as opposed to transmembrane Fas and higher cell surface expression of Fas on CD4+ T cells., Conclusions: We found that single nucleotide variant rs982764G was associated with lower plasma soluble Fas concentrations in a discovery and validation population, and single nucleotide variant rs982764G was also associated with lower organ dysfunction on day 3. These findings support further study of the Fas pathway as a potential mediator of organ dysfunction in critically ill patients., Competing Interests: Dr. Mikacenic’s institution received funding from the National Center for Advancing Translational Sciences (UL1 TR002319), the National Heart, Lung, and Blood Institute (NHLBI) (R01HL060710, RC2 HL101779), the National Institute on Aging (U19AG023122), the National Institute of allergy and Infectious Diseases (AI101990, AI083455), and the National Institute of Diabetes and Digestive and Kidney Issues (DK097672). Drs. Mikacenic, Bhatraju, Robinson-Cohen, Long, Cerosaletti, Calfee, Matthay, Christie, Meyer, Christiani, and Wurfel received support for article research from the National Institutes of Health (NIH). Drs. Cerosaletti’s, Calfee’s, and Meyer’s institutions received funding from the NIH. Dr. Cerosaletti’s institution received funding from the Department of Defense, the American Diabetes Association, and the Juvenile Diabetes Research Foundation. Drs. Calfee’s and Matthay’s institutions received funding from Gentech/Roche. Dr. Calfee’s institution received funding from Bayer; she received funding from Quark, Vasomune, Gen1e Life Sciences, and Prometic. Dr. Matthay received funding from Novartis and Citius Pharmaceuticals. Dr. Russell received funding from Asahi Kesai Pharmaceuticals of America, IB Therapeutics LLC, and Ferring Pharmaceuticals; he received funding from Grifols; he disclosed that he is the inventor of two patents owned by the University of British Colombia and Ferring, that he is a founder, director, and shareholder in Cyon Therapetutics Inc and a shareholder in Molecular You Corp, and that he is a member of the Data Safety Monitoring Board of an NIH-sponsored trial of plasma in coronavirus disease 2019 (Passive Immunity Trial for Our Nation to Treat COVID-19 in Hospitalized Adults [PassItOn]). Dr. Meyer’s institution received funding from the NHLBI (HL137006, HL137915), Quantum Leap Healthcare Collaborative, Biomarck, Inc, Athersys, Inc, and The Marcus Foundation. Dr. Wurfel’s institution received funding from the NHLBI. The remaining authors have disclosed that they do not have any potential conflicts of interest., (Copyright © 2021 by the Society of Critical Care Medicine and Wolters Kluwer Health, Inc. All Rights Reserved.)
- Published
- 2022
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9. Identification of persistent and resolving subphenotypes of acute hypoxemic respiratory failure in two independent cohorts.
- Author
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Sathe NA, Zelnick LR, Mikacenic C, Morrell ED, Bhatraju PK, McNeil JB, Kosamo S, Hough CL, Liles WC, Ware LB, and Wurfel MM
- Subjects
- APACHE, Biomarkers analysis, Cohort Studies, Female, Humans, Intensive Care Units organization & administration, Intensive Care Units statistics & numerical data, Male, Middle Aged, Prognosis, Prospective Studies, Respiratory Insufficiency diagnosis, Respiratory Insufficiency mortality, Mortality trends, Phenotype, Respiratory Insufficiency classification
- Abstract
Background: Acute hypoxemic respiratory failure (HRF) is associated with high morbidity and mortality, but its heterogeneity challenges the identification of effective therapies. Defining subphenotypes with distinct prognoses or biologic features can improve therapeutic trials, but prior work has focused on ARDS, which excludes many acute HRF patients. We aimed to characterize persistent and resolving subphenotypes in the broader HRF population., Methods: In this secondary analysis of 2 independent prospective ICU cohorts, we included adults with acute HRF, defined by invasive mechanical ventilation and PaO
2 -to-FIO2 ratio ≤ 300 on cohort enrollment (n = 768 in the discovery cohort and n = 1715 in the validation cohort). We classified patients as persistent HRF if still requiring mechanical ventilation with PaO2 -to-FIO2 ratio ≤ 300 on day 3 following ICU admission, or resolving HRF if otherwise. We estimated relative risk of 28-day hospital mortality associated with persistent HRF, compared to resolving HRF, using generalized linear models. We also estimated fold difference in circulating biomarkers of inflammation and endothelial activation on cohort enrollment among persistent HRF compared to resolving HRF. Finally, we stratified our analyses by ARDS to understand whether this was driving differences between persistent and resolving HRF., Results: Over 50% developed persistent HRF in both the discovery (n = 386) and validation (n = 1032) cohorts. Persistent HRF was associated with higher risk of death relative to resolving HRF in both the discovery (1.68-fold, 95% CI 1.11, 2.54) and validation cohorts (1.93-fold, 95% CI 1.50, 2.47), after adjustment for age, sex, chronic respiratory illness, and acute illness severity on enrollment (APACHE-III in discovery, APACHE-II in validation). Patients with persistent HRF displayed higher biomarkers of inflammation (interleukin-6, interleukin-8) and endothelial dysfunction (angiopoietin-2) than resolving HRF after adjustment. Only half of persistent HRF patients had ARDS, yet exhibited higher mortality and biomarkers than resolving HRF regardless of whether they qualified for ARDS., Conclusion: Patients with persistent HRF are common and have higher mortality and elevated circulating markers of lung injury compared to resolving HRF, and yet only a subset are captured by ARDS definitions. Persistent HRF may represent a clinically important, inclusive target for future therapeutic trials in HRF., (© 2021. The Author(s).)- Published
- 2021
- Full Text
- View/download PDF
10. Characterization of nucleic acids from extracellular vesicle-enriched human sweat.
- Author
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Bart G, Fischer D, Samoylenko A, Zhyvolozhnyi A, Stehantsev P, Miinalainen I, Kaakinen M, Nurmi T, Singh P, Kosamo S, Rannaste L, Viitala S, Hiltunen J, and Vainio SJ
- Subjects
- Genome, Human, Humans, Sweat, Extracellular Vesicles, MicroRNAs, Nucleic Acids
- Abstract
Background: The human sweat is a mixture of secretions from three types of glands: eccrine, apocrine, and sebaceous. Eccrine glands open directly on the skin surface and produce high amounts of water-based fluid in response to heat, emotion, and physical activity, whereas the other glands produce oily fluids and waxy sebum. While most body fluids have been shown to contain nucleic acids, both as ribonucleoprotein complexes and associated with extracellular vesicles (EVs), these have not been investigated in sweat. In this study we aimed to explore and characterize the nucleic acids associated with sweat particles., Results: We used next generation sequencing (NGS) to characterize DNA and RNA in pooled and individual samples of EV-enriched sweat collected from volunteers performing rigorous exercise. In all sequenced samples, we identified DNA originating from all human chromosomes, but only the mitochondrial chromosome was highly represented with 100% coverage. Most of the DNA mapped to unannotated regions of the human genome with some regions highly represented in all samples. Approximately 5 % of the reads were found to map to other genomes: including bacteria (83%), archaea (3%), and virus (13%), identified bacteria species were consistent with those commonly colonizing the human upper body and arm skin. Small RNA-seq from EV-enriched pooled sweat RNA resulted in 74% of the trimmed reads mapped to the human genome, with 29% corresponding to unannotated regions. Over 70% of the RNA reads mapping to an annotated region were tRNA, while misc. RNA (18,5%), protein coding RNA (5%) and miRNA (1,85%) were much less represented. RNA-seq from individually processed EV-enriched sweat collection generally resulted in fewer percentage of reads mapping to the human genome (7-45%), with 50-60% of those reads mapping to unannotated region of the genome and 30-55% being tRNAs, and lower percentage of reads being rRNA, LincRNA, misc. RNA, and protein coding RNA., Conclusions: Our data demonstrates that sweat, as all other body fluids, contains a wealth of nucleic acids, including DNA and RNA of human and microbial origin, opening a possibility to investigate sweat as a source for biomarkers for specific health parameters.
- Published
- 2021
- Full Text
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11. Alveolar CCN1 is associated with mechanical stretch and acute respiratory distress syndrome severity.
- Author
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Morrell ED, Grazioli S, Hung C, Kajikawa O, Kosamo S, Stapleton RD, Gharib SA, Amado-Rodríguez L, Albaiceta G, Wurfel MM, and Matute-Bello G
- Subjects
- Acute Lung Injury metabolism, Animals, Bronchoalveolar Lavage Fluid cytology, Inflammation metabolism, Lung metabolism, Mice, Cysteine-Rich Protein 61 metabolism, Respiration, Artificial methods, Respiratory Distress Syndrome metabolism, Ventilator-Induced Lung Injury metabolism
- Abstract
The cellular communication network factor 1 (CCN1) is a matricellular protein that can modulate multiple tissue responses, including inflammation and repair. We have previously shown that adenoviral overexpression of Ccn1 is sufficient to cause acute lung injury in mice. We hypothesized that CCN1 is present in the airspaces of lungs during the acute phase of lung injury, and higher concentrations are associated with acute respiratory distress syndrome (ARDS) severity. We tested this hypothesis by measuring 1 ) CCN1 in bronchoalveolar lavage fluid (BALF) and lung homogenates from mice subjected to ventilation-induced lung injury (VILI), 2 ) Ccn1 gene expression and protein levels in MLE-12 cells (alveolar epithelial cell line) subjected to mechanical stretch, and 3 ) CCN1 in BALF from mechanically ventilated humans with and without ARDS. BALF CCN1 concentrations and whole lung CCN1 protein levels were significantly increased in mice with VILI ( n = 6) versus noninjured controls ( n = 6). Ccn1 gene expression and CCN1 protein levels were increased in MLE-12 cells cultured under stretch conditions. Subjects with ARDS ( n = 77) had higher BALF CCN1 levels compared with mechanically ventilated subjects without ARDS ( n = 45) ( P < 0.05). In subjects with ARDS, BALF CCN1 concentrations were associated with higher total protein, sRAGE, and worse [Formula: see text]/[Formula: see text] ratios (all P < 0.05). CCN1 is present in the lungs of mice and humans during the acute inflammatory phase of lung injury, and concentrations are higher in patients with increased markers of severity. Alveolar epithelial cells may be an important source of CCN1 under mechanical stretch conditions.
- Published
- 2020
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12. Genetic variation implicates plasma angiopoietin-2 in the development of acute kidney injury sub-phenotypes.
- Author
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Bhatraju PK, Cohen M, Nagao RJ, Morrell ED, Kosamo S, Chai XY, Nance R, Dmyterko V, Delaney J, Christie JD, Liu KD, Mikacenic C, Gharib SA, Liles WC, Zheng Y, Christiani DC, Himmelfarb J, and Wurfel MM
- Subjects
- Acute Kidney Injury classification, Adult, Aged, Angiopoietin-1 genetics, Angiopoietin-2 blood, Critical Illness, Female, Genetic Predisposition to Disease, Humans, In Vitro Techniques, Male, Microvessels cytology, Middle Aged, Polymorphism, Single Nucleotide, Receptors, Tumor Necrosis Factor, Type I blood, Receptors, Tumor Necrosis Factor, Type I genetics, White People, Acute Kidney Injury genetics, Angiopoietin-2 genetics, Endothelial Cells metabolism
- Abstract
Background: We previously identified two acute kidney injury (AKI) sub-phenotypes (AKI-SP1 and AKI-SP2) with different risk of poor clinical outcomes and response to vasopressor therapy. Plasma biomarkers of endothelial dysfunction (tumor necrosis factor receptor-1, angiopoietin-1 and 2) differentiated the AKI sub-phenotypes. However, it is unknown whether these biomarkers are simply markers or causal mediators in the development of AKI sub-phenotypes., Methods: We tested for associations between single-nucleotide polymorphisms within the Angiopoietin-1, Angiopoietin-2, and Tumor Necrosis Factor Receptor 1A genes and AKI- SP2 in 421 critically ill subjects of European ancestry. Top performing single-nucleotide polymorphisms (FDR < 0.05) were tested for cis-biomarker expression and whether genetic risk for AKI-SP2 is mediated through circulating biomarkers. We also completed in vitro studies using human kidney microvascular endothelial cells. Finally, we calculated the renal clearance of plasma biomarkers using 20 different timed urine collections., Results: A genetic variant, rs2920656C > T, near ANGPT2 was associated with reduced risk of AKI-SP2 (odds ratio, 0.45; 95% CI, 0.31-0.66; adjusted FDR = 0.003) and decreased plasma angiopoietin-2 (p = 0.002). Causal inference analysis showed that for each minor allele (T) the risk of developing AKI-SP2 decreases by 16%. Plasma angiopoietin-2 mediated 41.5% of the rs2920656 related risk for AKI-SP2. Human kidney microvascular endothelial cells carrying the T allele of rs2920656 produced numerically lower levels of angiopoietin-2 although this was not statistically significant (p = 0.07). Finally, analyses demonstrated that angiopoietin-2 is minimally renally cleared in critically ill subjects., Conclusion: Genetic mediation analysis provides supportive evidence that angiopoietin-2 plays a causal role in risk for AKI-SP2.
- Published
- 2020
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13. sTREM-1 predicts mortality in hospitalized patients with infection in a tropical, middle-income country.
- Author
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Wright SW, Lovelace-Macon L, Hantrakun V, Rudd KE, Teparrukkul P, Kosamo S, Liles WC, Limmathurotsakul D, and West TE
- Subjects
- Adult, Aged, Female, Humans, Male, Middle Aged, Mortality, Tropical Climate, Biomarkers blood, Cross Infection diagnosis, Triggering Receptor Expressed on Myeloid Cells-1 genetics
- Abstract
Background: Few studies of biomarkers as predictors of outcome in infection have been performed in tropical, low- and middle-income countries where the burden of sepsis is highest. We evaluated whether selected biomarkers could predict 28-day mortality in infected patients in rural Thailand., Methods: Four thousand nine hundred eighty-nine adult patients admitted with suspected infection to a referral hospital in northeast Thailand were prospectively enrolled within 24 h of admission. In a secondary analysis of 760 patients, interleukin-8 (IL-8), soluble tumor necrosis factor receptor 1 (sTNFR-1), angiopoietin-1 (Ang-1), angiopoietin-2 (Ang-2), and soluble triggering receptor expressed by myeloid cells 1 (sTREM-1) were measured in the plasma. Association with 28-day mortality was evaluated using regression; a parsimonious biomarker model was selected using the least absolute shrinkage and selection operator (LASSO) method. Discrimination of mortality was assessed by receiver operating characteristic curve analysis and verified by multiple methods., Results: IL-8, sTNFR-1, Ang-2, and sTREM-1 concentrations were strongly associated with death. LASSO identified a three-biomarker model of sTREM-1, Ang-2, and IL-8, but sTREM-1 alone provided comparable mortality discrimination (p = 0.07). sTREM-1 alone was comparable to a model of clinical variables (area under receiver operating characteristic curve [AUC] 0.81, 95% confidence interval [CI] 0.77-0.85 vs AUC 0.79, 95% CI 0.74-0.84; p = 0.43). The combination of sTREM-1 and clinical variables yielded greater mortality discrimination than clinical variables alone (AUC 0.83, 95% CI 0.79-0.87; p = 0.004)., Conclusions: sTREM-1 predicts mortality from infection in a tropical, middle-income country comparably to a model derived from clinical variables and, when combined with clinical variables, can further augment mortality prediction., Trial Registration: The Ubon-sepsis study was registered on ClinicalTrials.gov ( NCT02217592 ), 2014.
- Published
- 2020
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14. Strong toll-like receptor responses in cystic fibrosis patients are associated with higher lung function.
- Author
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Kosamo S, Hisert KB, Dmyterko V, Nguyen C, Black RA, Holden TD, Radella F, Cotten PA, Goss CH, Aitken ML, and Wurfel MM
- Subjects
- Adult, Armadillo Domain Proteins metabolism, Correlation of Data, Cystic Fibrosis Transmembrane Conductance Regulator genetics, Cytoskeletal Proteins metabolism, Down-Regulation, Female, Humans, Intracellular Signaling Peptides and Proteins metabolism, Male, Proto-Oncogene Proteins c-akt metabolism, United States epidemiology, Cystic Fibrosis diagnosis, Cystic Fibrosis epidemiology, Cystic Fibrosis immunology, Cystic Fibrosis physiopathology, Gene Expression Profiling methods, Immunity, Innate immunology, Respiratory Function Tests methods, Toll-Like Receptors agonists, Toll-Like Receptors immunology
- Abstract
Background: Cystic fibrosis (CF) airways disease varies widely among patients with identical cystic fibrosis transmembrane conductance regulator (CFTR) genotypes. Robust airway inflammation is thought to be deleterious in CF; inter-individual variation in Toll-like receptor (TLR)-mediated innate immune inflammatory responses (TMIIR) might account for a portion of the phenotypic variation. We tested if TMIIR in people with CF are different than those of healthy controls, and whether higher TMIIR in people with CF are associated with reduced lung function., Methods: We cultured whole blood from clinically stable subjects with CF (n = 76) and healthy controls (n = 45) with TLR agonists, and measured cytokine production and expression of TLR-associated genes. We tested for differences in TLR-stimulated cytokine levels between subjects with CF and healthy subjects, and for associations between cytokine and gene expression levels with baseline lung function (forced expiratory volume in one second percent predicted (FEV
1 %)) and decline in FEV1 % over time., Results: TMIIR in blood from subjects with CF were lower than in healthy controls. Expression of TLR regulators SARM1, TOLLIP, and AKT1 were downregulated in CF. In subjects with CF we found that lower TLR4-agonist-induced IL-8 was associated with lower FEV1 % at enrollment (p<0.001) and with greater five year FEV1 % decline (p<0.001)., Conclusions: TMIIR were lower in people with CF relative to healthy controls; however, unexpectedly, greater whole blood TMIIR were positively associated with lung function in people with CF. These findings suggest a complex interaction between inflammation and disease in people with CF., Competing Interests: Declaration of Competing Interest The authors report no conflicts of interest., (Copyright © 2019. Published by Elsevier B.V.)- Published
- 2020
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15. Interleukin-6 improves infection identification when added to physician judgment during evaluation of potentially septic patients.
- Author
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Henning DJ, Hall MK, Watsjold BK, Bhatraju PK, Kosamo S, Shapiro NI, Liles WC, and Wurfel MM
- Subjects
- Biomarkers blood, Clinical Competence, Emergency Service, Hospital, Female, Humans, Male, Middle Aged, Prospective Studies, Interleukin-6 blood, Sepsis blood, Sepsis diagnosis
- Abstract
Background: Identifying infection is critical in early sepsis screening. This study assessed whether biomarkers of endothelial activation and/or inflammation could improve identification of infection among Emergency Department (ED) patients with organ dysfunction., Methods: We performed a prospective, observational study at two urban, academic EDs, between June 2016 and December 2017. We included admitted adults with 1) two systemic inflammatory response syndrome criteria and organ dysfunction, 2) systolic blood pressure < 90 mmHg, or 3) lactate ≥4.0 mmol/L. We excluded patients with trauma, transferred for intracranial hemorrhage, or without available blood samples. Treating ED physicians reported presence of infection (yes/no) at inpatient admission. Assays for angiopoietin-1, angiopoietin-2, soluble tumor necrosis factor receptor-1, interleukin-6, and interleukin-8 were performed using ED blood samples. The primary outcome was infection, adjudicated by paired physician review. Using logistic regression, we compared the performance of physician judgment, biomarkers, and physician judgment-biomarkers combination to predict infection. Area under the curve (AUC) and AUC 95% confidence intervals were estimated by bootstrap procedure., Results: Of 421 patients enrolled, 306 patients met final study criteria. Of these, 154(50.3%) patients had infectious etiologies. Physicians correctly discriminated infectious from non-infectious etiologies in 239 (78.1%). Physician judgment performed moderately when discriminating infection (AUC 0.78, 95% CI: 0.74-0.82) and outperformed the best biomarker model, interleukin-6 alone, (AUC 0.71, 0.66-0.76). Physician judgment improved when including interleukin-6 (AUC 0.84, 0.79-0.87), with modest AUC improvement: 0.06 (0.03-0.08)., Conclusions: In ED patients with organ dysfunction, plasma interleukin-6 may improve infection discrimination when added to physician judgment., Competing Interests: Declaration of Competing Interest DH reports providing consultation to the Washington State Hospital Association and research grant support from Baxter. NS reports his involvement in the data and safety monitoring board of Cumberland Pharmaceuticals and grant support from Cheetah Medical, Thermo-Fischer, Rapid Pathogen Screening, and Baxter. WCL is an inventor on US Patent Application No. US61/603,765 and US Patent Application No. US14/019,447, both regarding use of Ang-1 and Ang-2 as prognostic biomarkers in critical illness. No other authors have conflicts of interest to report., (Copyright © 2019 Elsevier Inc. All rights reserved.)
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- 2020
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16. Alveolar MMP28 is associated with clinical outcomes and measures of lung injury in acute respiratory distress syndrome.
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Morrell ED, Mikacenic C, Gong KQ, Kosamo S, Wurfel MM, and Manicone AM
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- Adult, Aged, Bronchoalveolar Lavage Fluid, Female, Gene Expression Regulation, Humans, Lung, Male, Matrix Metalloproteinases, Secreted analysis, Matrix Metalloproteinases, Secreted genetics, Middle Aged, Respiratory Distress Syndrome pathology, Respiratory Distress Syndrome therapy, Treatment Outcome, Lung Injury, Matrix Metalloproteinases, Secreted metabolism, Respiratory Distress Syndrome metabolism
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- 2020
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17. Endothelial Activation, Innate Immune Activation, and Inflammation Are Associated With Postbronchodilator Airflow Limitation and Obstruction Among Adolescents Living With HIV.
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Attia EF, Bhatraju PK, Triplette M, Kosamo S, Maleche-Obimbo E, West TE, Richardson BA, Zifodya JS, Eskander S, Njiru CD, Warui D, Kicska GA, Chung MH, Crothers K, Liles WC, and Graham SM
- Subjects
- Adolescent, Anti-HIV Agents therapeutic use, Biomarkers blood, Bronchodilator Agents, Child, Cross-Sectional Studies, Female, HIV Infections drug therapy, Humans, Inflammation blood, Lung Diseases, Obstructive drug therapy, Male, Respiratory Function Tests methods, Spirometry, Tomography, X-Ray Computed, Young Adult, HIV Infections complications, Immunity, Innate, Inflammation metabolism, Lung Diseases, Obstructive complications
- Abstract
Background: Chronic inflammation, innate immune activation, T-cell imbalance and endothelial activation have been linked with lung diseases. We sought to determine whether markers of these pathophysiologic pathways were associated with spirometry and chest computed tomography (CT) abnormalities among adolescents living with HIV (ALWH)., Setting: Coptic Hope Center for Infectious Diseases in Nairobi, Kenya., Methods: We performed a cross-sectional study of ALWH (10-19 years old). Participants underwent chest CT, spirometry, and venipuncture for serum biomarkers. We also collected demographic, anthropometric, T-cell subset, antiretroviral therapy, and exposure data. We compared characteristics and biomarkers by airflow obstruction [postbronchodilator FEV1/FVC z-score (zFEV1/FVC) < -1.64]. We used multivariable linear regression to determine associations of log10-transformed biomarkers and chest CT abnormalities with lower postbronchodilator zFEV1/FVC (airflow limitation). We performed exploratory principal components analysis on biomarkers, and determined associations of factors with postbronchodilator zFEV1/FVC and chest CT abnormalities., Results: Of 47 participants with acceptable quality spirometry, 21 (45%) were female, median age was 13 years and 96% had perinatally-acquired HIV. Median CD4 was 672 cells/µL. Overall, 28% had airflow obstruction and 78% had a chest CT abnormality; airflow obstruction was associated with mosaic attenuation (P = 0.001). Higher endothelial activation (sVCAM-1, sICAM-1), inflammation and innate immune activation (serum amyloid-A, sTREM-1, sCD163), and T-cell imbalance (lower CD4/CD8) markers were associated with airflow limitation. Factors comprising endothelial and innate immune activation were associated with airflow limitation., Conclusions: Endothelial activation, innate immune activation, T-cell imbalance, and chronic inflammation are associated with airflow limitation and obstruction, providing insights into chronic lung disease pathophysiology among ALWH.
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- 2020
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18. Physician Judgment and Circulating Biomarkers Predict 28-Day Mortality in Emergency Department Patients.
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Henning DJ, Bhatraju PK, Johnson NJ, Kosamo S, Shapiro NI, Zelnick LR, Liles WC, and Wurfel MM
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- Angiopoietin-1 blood, Angiopoietin-2 blood, Biomarkers blood, Female, Humans, Intensive Care Units, Interleukin-6 blood, Interleukin-8 blood, Intubation, Length of Stay, Male, Middle Aged, Prospective Studies, Receptors, Tumor Necrosis Factor, Type I blood, Sampling Studies, Vasoconstrictor Agents therapeutic use, Washington epidemiology, Clinical Decision-Making, Critical Illness mortality, Emergency Service, Hospital, Hospital Mortality, Judgment, Medical Staff, Hospital
- Abstract
Objectives: To determine whether biomarkers of endothelial activation and inflammation provide added value for prediction of in-hospital mortality within 28 days when combined with physician judgment in critically ill emergency department patients., Design: Prospective, observational study., Setting: Two urban, academic emergency departments, with ≈80,000 combined annual visits, between June 2016 and December 2017., Patients: Admitted patients, greater than 17 years old, with two systemic inflammatory response syndrome criteria and organ dysfunction, systolic blood pressure less than 90 mm Hg, or lactate greater than 4.0 mmol/L. Patients with trauma, intracranial hemorrhage known prior to arrival, or without available blood samples were excluded., Interventions: Emergency department physicians reported likelihood of in-hospital mortality (0-100%) by survey at hospital admission. Remnant EDTA blood samples, drawn during the emergency department stay, were used to measure angiopoietin-1, angiopoietin-2, tumor necrosis factor receptor-1, interleukin-6, and interleukin-8., Measurements and Main Results: We screened 421 patients and enrolled 314. The primary outcome of in-hospital mortality within 28 days occurred in 31 (9.9%). When predicting the primary outcome, the best biomarker model included angiopoietin-2 and interleukin-6 and performed moderately well (area under the curve, 0.72; 95% CI, 0.69-0.75), as did physician judgment (area under the curve, 0.78; 95% CI, 0.74-0.82). Combining physician judgment and biomarker models improved performance (area under the curve, 0.85; 95% CI, 0.82-0.87), with area under the curve change of 0.06 (95% CI, 0.04-0.09; p < 0.01) compared with physician judgment alone., Conclusions: Predicting in-hospital mortality within 28 days among critically ill emergency department patients may be improved by including biomarkers of endothelial activation and inflammation in combination with emergency department physician judgment.
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- 2019
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19. Flagellin-independent effects of a Toll-like receptor 5 polymorphism in the inflammatory response to Burkholderia pseudomallei.
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Dickey AK, Chantratita N, Tandhavanant S, Ducken D, Lovelace-Macon L, Seal S, Robertson J, Myers ND, Schwarz S, Wurfel MM, Kosamo S, and West TE
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- Adolescent, Adult, Aged, Burkholderia pseudomallei genetics, Codon, Nonsense, Cohort Studies, Female, Flagellin genetics, Humans, Immunity, Innate, Interleukin-10 genetics, Interleukin-10 immunology, Male, Melioidosis microbiology, Middle Aged, NF-kappa B genetics, NF-kappa B immunology, Point Mutation, Toll-Like Receptor 5 immunology, Tumor Necrosis Factor-alpha genetics, Tumor Necrosis Factor-alpha immunology, Young Adult, Burkholderia pseudomallei immunology, Flagellin immunology, Melioidosis genetics, Melioidosis immunology, Polymorphism, Genetic, Toll-Like Receptor 5 genetics
- Abstract
Background: Toll-like receptors (TLRs) are sentinel receptors of the innate immune system. TLR4 detects bacterial lipopolysaccharide (LPS) and TLR5 detects bacterial flagellin. A common human nonsense polymorphism, TLR5:c.1174C>T, results in a non-functional TLR5 protein. Individuals carrying this variant have decreased mortality from melioidosis, infection caused by the flagellated Gram-negative bacterium Burkholderia pseudomallei. Although impaired flagellin-dependent signaling in carriers of TLR5:c.1174C>T is well established, this study tested the hypothesis that a functional effect of TLR5:c.1174C>T is flagellin-independent and involves LPS-TLR4 pathways., Methodology/principal Findings: Whole blood from two independent cohorts of individuals genotyped at TLR5:c.1174C>T was stimulated with wild type or aflagellated B. pseudomallei or purified bacterial motifs followed by plasma cytokine measurements. Blood from individuals carrying the TLR5:c.1174C>T variant produced less IL-6 and IL-10 in response to an aflagellated B. pseudomallei mutant and less IL-8 in response to purified B. pseudomallei LPS than blood from individuals without the variant. TLR5 expression in THP1 cells was silenced using siRNA; these cells were stimulated with LPS before cytokine levels in cell supernatants were quantified by ELISA. In these cells following LPS stimulation, silencing of TLR5 with siRNA reduced both TNF-α and IL-8 levels. These effects were not explained by differences in TLR4 mRNA expression or NF-κB or IRF activation., Conclusions/significance: The effects of the common nonsense TLR5:c.1174C>T polymorphism on the host inflammatory response to B. pseudomallei may not be restricted to flagellin-driven pathways. Moreover, TLR5 may modulate TLR4-dependent cytokine production. While these results may have broader implications for the role of TLR5 in the innate immune response in melioidosis and other conditions, further studies of the mechanisms underlying these observations are required., Competing Interests: The authors have declared that no competing interests exist.
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- 2019
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20. A Prediction Model for Severe AKI in Critically Ill Adults That Incorporates Clinical and Biomarker Data.
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Bhatraju PK, Zelnick LR, Katz R, Mikacenic C, Kosamo S, Hahn WO, Dmyterko V, Kestenbaum B, Christiani DC, Liles WC, Himmelfarb J, and Wurfel MM
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- Acute Kidney Injury blood, Adult, Aged, Biomarkers blood, Critical Illness, Female, Humans, Intensive Care Units, Male, Middle Aged, Patient Admission, Prospective Studies, Severity of Illness Index, Time Factors, Acute Kidney Injury diagnosis, Models, Statistical, Risk Assessment
- Abstract
Background and Objectives: Critically ill patients with worsening AKI are at high risk for poor outcomes. Predicting which patients will experience progression of AKI remains elusive. We sought to develop and validate a risk model for predicting severe AKI within 72 hours after intensive care unit admission., Design, Setting, Participants, & Measurements: We applied least absolute shrinkage and selection operator regression methodology to two prospectively enrolled, critically ill cohorts of patients who met criteria for the systemic inflammatory response syndrome, enrolled within 24-48 hours after hospital admission. The risk models were derived and internally validated in 1075 patients and externally validated in 262 patients. Demographics and laboratory and plasma biomarkers of inflammation or endothelial dysfunction were used in the prediction models. Severe AKI was defined as Kidney Disease Improving Global Outcomes (KDIGO) stage 2 or 3., Results: Severe AKI developed in 62 (8%) patients in the derivation, 26 (8%) patients in the internal validation, and 15 (6%) patients in the external validation cohorts. In the derivation cohort, a three-variable model (age, cirrhosis, and soluble TNF receptor-1 concentrations [ACT]) had a c-statistic of 0.95 (95% confidence interval [95% CI], 0.91 to 0.97). The ACT model performed well in the internal (c-statistic, 0.90; 95% CI, 0.82 to 0.96) and external (c-statistic, 0.93; 95% CI, 0.89 to 0.97) validation cohorts. The ACT model had moderate positive predictive values (0.50-0.95) and high negative predictive values (0.94-0.95) for severe AKI in all three cohorts., Conclusions: ACT is a simple, robust model that could be applied to improve risk prognostication and better target clinical trial enrollment in critically ill patients with AKI., (Copyright © 2019 by the American Society of Nephrology.)
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- 2019
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21. Identification of Acute Kidney Injury Subphenotypes with Differing Molecular Signatures and Responses to Vasopressin Therapy.
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Bhatraju PK, Zelnick LR, Herting J, Katz R, Mikacenic C, Kosamo S, Morrell ED, Robinson-Cohen C, Calfee CS, Christie JD, Liu KD, Matthay MA, Hahn WO, Dmyterko V, Slivinski NSJ, Russell JA, Walley KR, Christiani DC, Liles WC, Himmelfarb J, and Wurfel MM
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- Aged, Female, Humans, Male, Middle Aged, Washington, Acute Kidney Injury genetics, Acute Kidney Injury physiopathology, Acute Kidney Injury therapy, Biomarkers blood, Phenotype, Vasopressins therapeutic use
- Abstract
Rationale: Currently, no safe and effective pharmacologic interventions exist for acute kidney injury (AKI). One reason may be that heterogeneity exists within the AKI population, thereby hampering the identification of specific pathophysiologic pathways and therapeutic targets., Objective: The aim of this study was to identify and test whether AKI subphenotypes have prognostic and therapeutic implications., Methods: First, latent class analysis methodology was applied independently in two critically ill populations (discovery [n = 794] and replication [n = 425]) with AKI. Second, a parsimonious classification model was developed to identify AKI subphenotypes. Third, the classification model was applied to patients with AKI in VASST (Vasopressin and Septic Shock Trial; n = 271), and differences in treatment response were determined. In all three populations, AKI was defined using serum creatinine and urine output., Measurements and Main Results: A two-subphenotype latent class analysis model had the best fit in both the discovery (P = 0.004) and replication (P = 0.004) AKI groups. The risk of 7-day renal nonrecovery and 28-day mortality was greater with AKI subphenotype 2 (AKI-SP2) relative to AKI subphenotype 1 (AKI-SP1). The AKI subphenotypes discriminated risk for poor clinical outcomes better than the Kidney Disease: Improving Global Outcomes stages of AKI. A three-variable model that included markers of endothelial dysfunction and inflammation accurately determined subphenotype membership (C-statistic 0.92). In VASST, vasopressin compared with norepinephrine was associated with improved 90-day mortality in AKI-SP1 (27% vs. 46%, respectively; P = 0.02), but no significant difference was observed in AKI-SP2 (45% vs. 49%, respectively; P = 0.99) and the P value for interaction was 0.05., Conclusions: This analysis identified two molecularly distinct AKI subphenotypes with different clinical outcomes and responses to vasopressin therapy. Identification of AKI subphenotypes could improve risk prognostication and may be useful for predictive enrichment in clinical trials.
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- 2019
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