84 results on '"Korkmaz U"'
Search Results
2. Evaluation of Iodine-131 Labelled Lawsone (2-Hydroxy-1,4-Naphthoquinone) Compound's Transdermal and Intravenous Biodistribution
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Tekin, V., Korkmaz, U., Ince, I., Kutlubay, I., Altun, G. Durmus, Muftuler, F. Biber, and Ege Üniversitesi
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[No Keyword] - Abstract
[No Abstract Available], European Assoc Nucl Med
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- 2020
3. Multi-sectoral modelling of decarbonisation pathways : a pilot thought experiment
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Welsch, Julia, Schmid, Dorotea, Montenegro, R., Pang, Xi, Gardumi, Francesco, Balyk, Olexandr, Korkmaz, U, Fahl, U, Howells, Mark, Karlsson, Kenneth, Welsch, Julia, Schmid, Dorotea, Montenegro, R., Pang, Xi, Gardumi, Francesco, Balyk, Olexandr, Korkmaz, U, Fahl, U, Howells, Mark, and Karlsson, Kenneth
- Abstract
QC 20170531, REEEM
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- 2017
4. Chronic hepatitis B associated with hepatic steatosis, insulin resistance, necroinflammation and fibrosis
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Yilmaz, B, primary, Koklu, S, additional, Buyukbayram, H, additional, Yalçin, K, additional, Korkmaz, U, additional, Posul, E, additional, Can, G, additional, and Kurt, M, additional
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- 2015
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5. 907 IS SHORT TIME COMBINED THERAPY WITH PEGYLATED INTERFERON PLUS RIBAVIRIN EFFECTIVE IN PATIENTS WITH ACUTE HEPATITIS C?
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Sirin, G., primary, Sentürk, O., additional, Celebi, A., additional, Duman, A.E., additional, Korkmaz, U., additional, Yılmaz, H., additional, and Hülagu, S., additional
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- 2013
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6. A new technique for endoscopic treatment of gastric phytobezoars: fragmentation using guidewire.
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Senturk, O., Hulagu, S., Celebi, A., Korkmaz, U., Duman, A.E., Dindar, G., Bozkurt, N., Yilmaz, H., Ozturkler, M., Can, B., and Batman, A.
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- 2014
7. Serum Leptin Levels in Type 1 Diabetic and Obese Children: Relation to Insulin Levels
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Kirel, B., Dogruel, N., Korkmaz, U., Kilic, F. S., Ozdamar, K., and Ucar, B.
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- 2000
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8. A thermal quantum classifier
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Korkmaz, U., Türkpençe, D., Tahir Cetin AKINCI, and Şeker, S.
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Quantum Physics ,ComputerSystemsOrganization_MISCELLANEOUS ,FOS: Physical sciences ,Quantum Physics (quant-ph) - Abstract
A data classifier is the basic structural unit of an artificial neural network. These classifiers, known as perceptron, make an output prediction over the linear summation of the input information. Quantum versions of artificial neural networks are considered to provide more efficient and faster artificial intelligence and learning algorithms. The most generic and realistic open quantum systems are the quantum systems in thermal environments and the information carried by the thermal reservoirs is the temperature information. This study shows that an open quantum system that is in contact with many information channels is a natural information classifier. More specifically, it has been demonstrated that a two-level quantum system can classify temperature information of distinct thermal reservoirs. The results of the manuscript are of importance to the construction of thermal quantum neural networks and the development of minimal quantum thermal machines. Also, a physical model, proposed and discussed with realistic parameters, shows that faster operating thermal quantum classifiers can be built than the classical versions., Comment: 19 pages, 8 Figures
9. Comparison of dynamic contrast-enhanced MRI parameters with 99mTc-sestamibi uptake ratios in benign thyroid pathologies
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Tuncbilek, N., Sarikaya, A., Korkmaz, U., nese torun, and Aytekin, E.
10. Contribution of OSEM Algorithm and Couinaud Segment Analys to Diagnostic Accuracy on Liver Hemangioma Imaging By Using Tc 99m Labeled Red Blood Cells (RBC)
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Korkmaz, U., Durmus-Altun, G., Ustun, F., nese torun, and Can, U.
11. Aplastic crisis due to parvovirus B19 in an adult hereditary spherocytosis patient: Case report
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Güngor, A., Bilir, C., Önder, E., Korkmaz, U., Aytekin Alçelik, and Cinemre, H.
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parvovirus B19 ,viruses ,hemic and lymphatic diseases ,spherocytosis ,virus diseases ,human ,hereditary ,anemia ,aplastic - Abstract
Bilir, Cemil/0000-0002-1372-4791; Alcelik, Aytekin/0000-0002-3156-1076 WOS: 000259856300026 Parvovirus B19 may cause transient aplastic crises in hereditary hemolytic anemia patients. A 29-year-old male presenting with fatigue, fever and diffuse joint and Muscle pain was admitted to the internal medicine service. He later developed leukopenia, thrombocytopenia and marked anemia with 0.8% reticulocytes. The bone marrow biopsy proved normocellular with increased proetrithroblasts and decreased mature erythroblasts. On day 6 of admission, his complete blood count (CBC) started to return to normal and the aplastic crisis was attributed to parvovirus B19 infection. Anti-IgM B19 antibody positivity supported the diagnosis and the clinical picture. This is the first reported Parvovirus B19-induced aplastic crisis in an adult hereditary spherocytosis patient in Turkey.
12. Age-based computer-aided diagnosis approach for pancreatic cancer on endoscopic ultrasound images
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Orhan Kocaman, Mevlüt Kurt, Bülent Yılmaz, Ziya Ekşi, Murat Ozkan, Murat Cakiroglu, Emre Dandil, Güray Can, Ugur Korkmaz, Ozkan, M, Cakiroglu, M, Kocaman, O, Kurt, M, Yilmaz, B, Can, G, Korkmaz, U, Dandil, E, Eksi, Z, Sakarya Üniversitesi/Teknoloji Fakültesi/Mekatronik Mühendisliği Bölümü, Çakıroğlu, Murat, Kocaman, Orhan, Ekşi, Ziya, BAİBÜ, Bolu Teknik Bilimler Meslek Yüksekokulu, Elektrik Ve Enerji Bölümü, BAİBÜ, Tıp Fakültesi, Dahili Tıp Bilimleri Bölümü, Özkan, Murat, Kurt, Mevlüt, Yılmaz, Bülent, Can, Güray, and Korkmaz, Uğur
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Endoscopic ultrasound ,medicine.medical_specialty ,Ozkan M., ÇAKIROĞLU M., Kocaman O., Kurt M., Yilmaz B., CAN G., Korkmaz U., Dandil E., Eksi Z., -Age-based computer-aided diagnosis approach for pancreatic cancer on endoscopic ultrasound images-, ENDOSCOPIC ULTRASOUND, cilt.5, ss.101-107, 2016 ,pancreatic cancer ,Image processing ,Pancreatic Cancer ,03 medical and health sciences ,0302 clinical medicine ,Age groups ,Patient age ,Pancreatic cancer ,Endoscopic Ultrasound (EUS) Images ,medicine ,Radiology, Nuclear Medicine and imaging ,Computer-Aided Diagnosis (CAD) ,Gastroenterology & Hepatology ,Hepatology ,medicine.diagnostic_test ,business.industry ,Gastroenterology ,Cancer ,medicine.disease ,Cad system ,Computer-aided diagnosis (CAD) ,endoscopic ultrasound (EUS) images ,Computer-aided diagnosis ,030220 oncology & carcinogenesis ,Original Article ,030211 gastroenterology & hepatology ,Radiology ,business - Abstract
WOS:000374959900006 PubMed: 27080608 Aim: The aim was to develop a high-performance computer-aided diagnosis (CAD) system with image processing and pattern recognition in diagnosing pancreatic cancer by using endosonography images. Materials and Methods: On the images, regions of interest (ROI) of three groups of patients (60) were extracted by experts; features were obtained from images using three different techniques and were trained separately for each age group with an Artificial Neural Network (ANN) to diagnose cancer. The study was conducted on endosonography images of 202 patients with pancreatic cancer and 130 noncancer patients. Results: 122 features were identified from the 332 endosonography images obtained in the study, and the 20 most appropriate features were selected by using the relief method. Images classified under three age groups (in years; 60) were tested via 200 random tests and the following ratios were obtained in the classification: accuracy: 92%, 88.5%, and 91.7%, respectively; sensitivity: 87.5%, 85.7%, and 93.3%, respectively; and specificity: 94.1%, 91.7%, and 88.9%, respectively. When all the age groups were assessed together, the following values were obtained: accuracy: 87.5%, sensitivity: 83.3%, and specificity: 93.3%. Conclusions: It was observed that the CAD system developed in the study performed better in diagnosing pancreatic cancer images based on classification by patient age compared to diagnosis without classification. Therefore, it is imperative to take patient age into consideration to ensure higher performance.
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- 2016
13. Achalasia secondary to lung adenocarcinoma
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Altay Celebi, Ugur Korkmaz, Hasan Yilmaz, Fatma Inci Can, Fatih Balli, Burak Can, Can, B, Balli, F, Korkmaz, U, Yilmaz, H, Can, FI, Celebi, A, Sakarya Üniversitesi/İlahiyat Fakültesi/Temel İslam Bilimleri Bölümü, Yılmaz, Hayati, and Çelebi, Ahmet
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Abdominal pain ,medicine.medical_specialty ,Lung ,business.industry ,Malignancy ,Achalasia ,medicine.disease ,Dysphagia ,Surgery ,medicine.anatomical_structure ,General & Internal Medicine ,Esophageal dilatation ,Adenocarcinoma of lung ,Pseudoachalasia ,medicine ,Adenocarcinoma ,Radiology ,medicine.symptom ,business ,Lung cancer ,Letter to the Editor - Abstract
To the Editor, Pseudoachalasia is a rare entity and is difficult to distinguish from idiopathic achalasia. The most common cause of achalasia secondary to neoplasia is adenocarcinoma of the distal esophagus and the gastroesophageal junction. The second most common cause is small-cell lung cancer [1]. We report a case of lung adenocarcinoma secondary to achalasia. A 72-year-old man had dysphagia to liquids and solids, abdominal pain, gush-style vomiting without nausea, and a 10-kg weight loss over the past 6 months. He was vomiting immediately after eating. He had been diagnosed with opsomyoclonus and had a 60-year smoking history. Barium esophagography showed a proximal esophageal dilatation tapering into a "bird's beak" (Fig. 1A). Mild pressure was applied by the endoscope to open the gastroesophageal junction. Long time smoking history, older age, opsomyoclonus, and rapidly progressive achalasia symptoms-especially weight loss-indicate that cancer should be considered. Physical examination and chest imaging were normal, so we decided to screen for cancer by computed tomography (CT) scan. A thoracic and abdominal CT scan revealed esophageal dilatation and a spiculated lesion located in the left lung subpleural area. Botulinum toxin was injected endoscopically into the gastroesophageal junction, and the patient's symptoms improved. A transthoracic needle biopsy was performed by interventional radiology (Fig. 1B), and the diagnosis was lung adenocarcinoma. We referred the patient to the oncology department. Positron emission tomography-CT scan was performed by the oncology department for staging. There was bilateral mediastinal lymphadenopathy; therefore, the diagnosis was stage 3B lung cancer. Neoplasia causes achalasia by directly obstructing the lower esophageal sphincter and by paraneoplasia (depending on the antibodies) [2]. Direct involvement of the esophageal myenteric plexus is the most common mechanism, and endoscopic ultrasonography is a useful method to show tumor infiltration [3]. Type 1 antineuronal nuclear antibody (ANNA-1 or anti-Hu), type 1 Purkinje cell cytoplasmic antibody (PCA-1 or anti-Yo), and N-type calcium channel antibodies have been shown to be related to pseudoachalasia [1]. We do not have any serological or pathological evidence for pseudoachalasia and, therefore, cannot prove that it was present in this patient. CT scan and endoscopic examination did not suggest tumor invasion, so we thought that paraneoplasia was the cause of achalasia. Some clinical differences have been noted between idiopathic achalasia and pseudoachalasia. Three criteria were identified by Tucker et al. [4] to distinguish pseudoachalasia from primary achalasia: age older than 50 years, symptoms with a duration of less than 1 year, and rapid weight loss. Weight loss is more rapid at the onset of pseudoachalasia symptoms than at those of idiopathic achalasia, and pseudoachalasia occurs in older patients [4]. Patients with idiopathic achalasia commonly have a long duration of symptoms before being diagnosed [5]. Pseudoachalasia in lung cancers frequently arises during the course of small-cell carcinoma [1]. As in the reported case, it occurs more rarely with lung adenocarcinoma. In particular, the possibility of malignancy should be investigated in a patient of advanced age with achalasia accompanied by rapidly developing symptoms and in patients without a detectable lesion of the distal esophagus or adjacent structures. Figure 1 (A) Barium esophagography showing proximal esophageal dilatation tapering into a "bird's beak." (B) Transthoracic needle biopsy from a spiculated lesion located in the left lung subpleural area.
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- 2015
14. Assessment of three different radioiodine doses for ablation therapy of thyroid remnants: Efficiency, complications and patient comfort.
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Soyluoglu S, Andac B, Korkmaz U, and Ustun F
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- Humans, Iodine Radioisotopes adverse effects, Retrospective Studies, Patient Comfort, Thyroidectomy, Thyroglobulin, Thyroid Neoplasms radiotherapy, Thyroid Neoplasms surgery
- Abstract
I-131 radioiodine (RAI) ablation removes postoperative residual tissue and facilitates follow-up in low- and intermediate-risk differentiated thyroid cancer (DTC). Although low doses have been reported to be as effective as higher doses for ablation, the doses administered still vary depending on the patient and the practitioner. We aimed to evaluate the ablation efficiency, complications, and length of stay (LOS) of patients with DTC treated with 3 different doses for ablation. Patients with DTC who received RAI therapy were retrospectively reviewed. One hundred thirty patients with low-intermediate-risk, according to American Thyroid Association classification, without known lymph nodes or distant metastases were included. Patients were divided into 3 groups as 30 to 50 mCi, 75 mCi, and 100 mCi. Residue thyroid and salivary glands were evaluated from 9 to 12 months post-RAI I-131 scans. No significant difference was found between groups regarding ablation success (P = .795). In multivariable analyses, pretreatment thyroglobulin (hazard ratio = 0.8, 95% confidence interval 0.601-0.952, P = .017) and anti- thyroglobulin antibody (hazard ratio = 1.0, 95% confidence interval 0.967-0.998, P = .024) were 2 independent predictors of ablation success. The mean LOS was 2.1 ± 0.3, 2.6 ± 0.6, and 2.9 ± 0.4 days, respectively, (P = .001). LOS rates of ≥ 3 days were 13.2%, 54.3%, and 84.8%, respectively. Mild decreases in hemoglobin, white blood cell (WBC), and platelet counts were observed in all groups after 6 weeks without any clinically significant findings. A lower rate of change in WBC counts was observed in the 30 to 50 mCi group compared to others. There was no dose-dependent difference regarding the early complaints questioned. Ablation with 30 to 50 mCi provides benefits such as shorter LOS, better patient comfort, less salivary gland dysfunction, and less WBC suppression, thus reducing costs without decreasing efficacy., Competing Interests: The authors have no funding and conflicts of interest to disclose., (Copyright © 2023 the Author(s). Published by Wolters Kluwer Health, Inc.)
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- 2023
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15. Tumor Microenvironment Features as Predictive Biomarkers in Metastatic Differentiated Thyroid Cancer and Their Relationship With 18F-Fluorodeoxyglucose Positron Emission Tomography/Computed Tomography (18F-FDG PET/CT) Metabolic Parameters.
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Soyluoglu S, Tastekin E, Andac B, Korkmaz U, Orun SG, and Durmus Altun G
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Objective: The role of the tumor microenvironment in tumor progression and treatment response is being investigated for different types of cancer. This study aimed to determine the relationships between tumor microenvironment, histopathology, 18F-fluorodeoxyglucose positron emission tomography/computed tomography (18F-FDG PET/CT)-based metabolic parameters, treatment response, and overall survival (OS) in metastatic differentiated thyroid cancer (DTC). Methods: Metastatic DTC patients who underwent 18F-FDG PET/CT between 2015-2019 were evaluated. Clinicopathological, histopathological features and PET/CT parameters of patients were recorded. Microenvironmental characteristics of the primary tumor, such as mitosis, intratumoral and peritumoral lymphocytosis, intratumoral and peritumoral fibrosis, were evaluated from the tissue samples. The relationships between these factors were statistically analyzed., Results: Sixty-five patients (38 females, 27 males, age: 49±15 years) were included. Mitosis, intra/peritumoral lymphocytosis, and intra/peritumoral fibrosis were frequent; however, none of them had a statistically significant association with PET-positive metastases, treatment response, or OS. Univariate analysis showed that gender, size, thyroglobulin values, residual thyroid tissue, PET-positive metastases, and maximum standardized uptake value (SUVmax) were significant predictors of OS. At multivariate analysis, PET-positive metastases (HR=-2.65, 95%CI 0.007-0.707, p=0.024) and SUVmax (HR=-2.74, 95%CI 0.006-0.687, p=0.023) were the only independent predictors for OS. Conclusion: Our study revealed that microenvironmental characteristics of the primary tumor did not show prognostic significance in metastatic DTC. PET-positive metastases and SUVmax levels were the only significant factors that predicted overall survival in DTC. Supporting the results of our study with further studies with a larger sample size may be necessary to determine the relationship between the tumor microenvironment and prognosis in DTC., Competing Interests: The authors have declared that no competing interests exist., (Copyright © 2023, Soyluoglu et al.)
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- 2023
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16. The coupling of blue emitting carbon dots with Eu 3+ /Tb 3+ co-doped luminescent glasses for utilization in white light emitting diodes.
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Korkmaz U, Özlem B, Erol E, Alas MÖ, Genç Altürk R, Çelikbilek Ersundu M, and Ersundu AE
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Lanthanide-doped luminescent glasses have attracted tremendous attention in modern optoelectronic applications, especially for solid-state white light-emitting diodes (WLEDs). Eu
3+ /Tb3+ co-doped luminescent glasses are well-known to emit intense yellowish-orange light resulting from the energy transfer from green-emitting sensitizer Tb3+ ions to red-emitting activator Eu3+ ions. Obtaining highly efficient blue light from lanthanide ions remains a challenge due to their weak down-converted emission. In this work, we attempt to use the unique characteristics of blue-emitting carbon dots (BCDs), i.e. , a broad emission spectrum, ease of synthesis, and high stability, to compensate for this blue light deficiency problem. Correspondingly, a new strategy is proposed by coupling BCDs with Eu3+ /Tb3+ co-doped glasses for their potential utilization in WLEDs. Hence, Eu3+ /Tb3+ co-doped glasses are prepared in different thicknesses, i.e. , 0.8, 1, and 1.5 mm, via the conventional melt-quenching method and subsequently spin-coated with BCDs to achieve adjustable photoluminescence quantum yield (PLQY) values. Ultimately, a proof-of-concept WLED is prepared using a 0.8 mm thick BCD-coated Eu3+ /Tb3+ co-doped luminescent glass exhibiting outstanding luminescence performance with a CRI value of 92, a CCT of 4683 K, color coordinates of ( x = 0.3299, y = 0.3421), a satisfying PLQY value of 55.58%, and a corresponding LER value of 316 lm W-1 under the excitation of a 375 nm UV LED. BCD-coated Eu3+ /Tb3+ co-doped luminescent glasses show excellent stability against photobleaching, temperature variations, and humidity. The findings of this work indicate that the coupling of BCDs with Eu3+ /Tb3+ co-doped luminescent glasses holds great potential as a substitute for traditional solid-state lighting sources.- Published
- 2023
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17. Radionuclide Therapy Videos on YouTube as An Educational Material: Has the COVID-19 Pandemic Changed the Quality, Usefulness, and Interaction Features.
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Korkmaz U, Soyluoglu S, and Arda E
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Introduction: Current treatment approach aims to achieve greater efficacy with fewer side effects, by targeted cancer therapy as much as possible. Radionuclide therapy is a modality that uses cancer theranostics and is increasingly applied for various cancers as a targeted therapy. YouTube is a preferred tool for obtaining medical information from the internet. This study aims to determine the content quality, level of interaction and usefulness as education material of radionuclide therapy YouTube videos and to reveal the impact of the COVID-19 process on these parameters., Materials and Methods: The keywords were searched on YouTube on August 25, 2018, and May 10, 2021. After removing duplicate and excluded videos, all remaining videos were scored and coded., Results: Majority of the videos were useful educational material. Most of them were high quality. Popularity markers were unrelated to quality level. After COVID, the power index of videos with high JAMA scores increased. The COVID-19 pandemic did not have a negative effect on video features; the quality of the content increased even more after the pandemic., Conclusion: Radionuclide therapy YouTube videos have high-quality content and provide useful education material. The popularity is independent of the content quality. During the pandemic, video quality and usefulness characteristics did not change, while the visibility is increased. We consider YouTube to be an appropriate educational material for patients and healthcare professionals to gain basic knowledge of radionuclide therapy. The Covıd-19 pandemic highlighted the power of radionuclide therapy YouTube videos as an educational material., Competing Interests: Conflict of InterestAuthors Ulku Korkmaz, Selin Soyluoglu, and Ersan Arda declare that they have no competing interests., (© The Author(s), under exclusive licence to Korean Society of Nuclear Medicine 2023, Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.)
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- 2023
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18. 68Ga-PSMA-I&T-PET/CT interobserver and intraobserver agreement for prostate cancer: a lesion based and subregional comparison study among observers with different levels of experience.
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Soyluoglu S, Korkmaz U, Ozdemir B, Ustun F, and Durmus-Altun G
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- Humans, Male, Aged, Middle Aged, Aged, 80 and over, Prostatic Neoplasms diagnostic imaging, Prostatic Neoplasms pathology, Gallium Isotopes, Gallium Radioisotopes, Positron Emission Tomography Computed Tomography, Observer Variation, Edetic Acid analogs & derivatives, Oligopeptides
- Abstract
Objective: 68Ga-PSMA-PET/CT is a relatively new technique, that is rapidly becoming widespread. We aimed to contribute interobserver-intraobserver agreement of 68Ga-PSMA-PET/CT, among low/high-experienced interpreters., Methods: 68Ga-PSMA-PET/CT of 56 patients with prostate cancer were evaluated blindly by four observers. Visual interpretation of malignant disease and SUVmax for lymph node (LN) regions, local tumor, bones and visceral organs were recorded. Cohen's Kappa and Fleiss' Kappa analyses were used to measure agreement between low/high/all-experienced observers. Variations were compared for regions, and the effect of prostate-specific antigen or Gleason score on the results was investigated., Results: Interobserver agreement was almost perfect for all LN regions (LN1 low-experienced κ: 0.84/0.84, high-experienced 0.89/0.96; LN2 low-experienced κ: 0.88/0.79, high-experienced 0.95/0.95; LN3 low-experienced κ: 0.84/0.89, high-experienced 0.87/0.94, first/second readings, respectively) and bone lesions (low-experienced κ: 0.88/0.88, high-experienced 0.92/0.92, first/second readings, respectively). For local tumor, interobserver agreement was substantially-almost perfect among a high-experienced group (κ: 0.74/0.89, first/second readings, respectively), and was moderate-substantial among a low-experienced group (κ: 0.62/0.56, first/second readings, respectively). Intraobserver agreement was almost perfect for three observers for all regions and substantial for the observer with the lowest experience in LN3, local and visceral lesions (κ: 0.74/0.79/0.62, respectively)., Conclusion: Interpretation of prostate-specific membrane antigen (PSMA) for prostate cancer is acceptably consistent among observers, but some details are noteworthy. The evaluation should be done more algorithmically for local tumors, since all observers showed relatively lower agreement. The agreement increased as prostate-specific antigen and Gleason score increased. The observer with PSMA experience <30 readings showed lower reliability, distinct from the others. This indicates that although a reader may be familiar with other PET agents, a more consistent interpretation of 68Ga-PSMA-PET/CT requires training with a small number of identified cases., (Copyright © 2021 Wolters Kluwer Health, Inc. All rights reserved.)
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- 2021
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19. Infection of cardiac prosthetic valves and implantable electronic devices: early diagnosis and treatment.
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Lakkas L, Serim BD, Fotopoulos A, Iakovou I, Doumas A, Korkmaz U, Michalis LK, and Sioka C
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- Early Diagnosis, Electronics, Fluorodeoxyglucose F18, Humans, Positron Emission Tomography Computed Tomography, Radiopharmaceuticals, Defibrillators, Implantable adverse effects, Endocarditis diagnosis, Endocarditis etiology, Endocarditis therapy, Heart Valve Prosthesis adverse effects, Pacemaker, Artificial adverse effects, Prosthesis-Related Infections diagnosis, Prosthesis-Related Infections therapy
- Abstract
There has been a recent rise in the use of implantable cardiac devices, mostly valves but also electronic ones, such as pacemakers, and implantable defibrillators. The increasing use of these devices had as a consequence the raised incidence of endocarditis, an infrequent but morbid complication of these procedures. Thus, early diagnosis of the implantable cardiac devices related infection and endocarditis became pivotal for appropriate management. For diagnostic purposes, the modified Duke criteria are widely used, which are based on clinical and imaging findings, in addition to serological analyses and blood cultures. 18F-fluoro-2-deoxyglucose (FDG) positron emission tomography/computed tomography (PET/CT) is a recently employed method in order to improve the early diagnosis of endocarditis as well as infection of the implantable device. It is likely, that combining the modified Duke criteria with the FDG PET/CT, will increase the sensitivity and specificity of diagnosis and will guide the treating physician to an early and appropriate management.
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- 2021
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20. Sarcopenia in Hodgkin's lymphoma evaluated with 18-FDG PET/CT, focus on age, performance, and treatment.
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Bas V, Umit EG, Korkmaz U, Baysal M, Karaman Gulsaran S, Demirci U, Kirkizlar HO, Durmus Altun G, and Demir AM
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- Adult, Age Factors, Aged, Female, Hodgkin Disease pathology, Hodgkin Disease therapy, Humans, Male, Middle Aged, Sarcopenia pathology, Young Adult, Fluorodeoxyglucose F18 therapeutic use, Hodgkin Disease complications, Hodgkin Disease diagnostic imaging, Positron Emission Tomography Computed Tomography methods, Sarcopenia etiology
- Abstract
Sarcopenia is defined as a progressive and generalized muscle disorder associated with certain physiological and pathological conditions. We aimed to evaluate the prevalence of sarcopenia in patients with HL using 18-fluoro deoxyglucose (FDG) PET/CT, which would provide a data of muscle mass with the CT compartment and also data of muscle metabolism with the 18-FDG compartment of the imaging modality. Fifty-nine patients diagnosed with HL were included in the study. PET/CT images before and after treatment were evaluated with regard to lumbar muscle mass and metabolism. Mean lumbar muscle evaluation with CT before treatment was 92, 40 HU, and after treatment was 89, 41 HU. Mean metabolic tumor volume (MTV) evaluated with FDG PET before treatment was 4, 13 mm
3 while after treatment was 4, 10 mm3 . The lumbar muscle mass in terms of HU which was evaluated with CT was observed to be decreased after treatment. Likewise, the metabolic evaluation was observed to be also decreased after treatment. Despite the decline in muscle mass after treatment in the whole group, this decline was particularly observed in the better initial performance group. In patients with BMI > 32, there was a significant decline in muscle mass. Abdominal nodal involvement was related with poorer muscle mass and quality. In HL care, particular attention should be given to patients who are younger and with better physical condition in terms of preserving the muscle reserves and preventing sarcopenia.- Published
- 2021
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21. Adaptation and the Psychometric Properties of Turkish version of the Structured Clinical Interview for the DSM-5-Personality Disorders - Clinician Version (SCID-5-PD/CV).
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Bayad S, Alp-Topbaş Ö, Kocabaş T, Elbir M, Gökten-Ulusoy D, Korkmaz U, Araz O, Ergüner-Aral A, Karabekiroğlu A, and Aydemir Ö
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- Adult, Diagnostic and Statistical Manual of Mental Disorders, Female, Humans, Interview, Psychological, Middle Aged, Psychometrics, Reproducibility of Results, Personality, Personality Disorders diagnosis
- Abstract
Objective: The aim of this study is to demonstrate the validity and reliability of the Categorical and Dimensional Psychometric Properties of the Structured Clinical Interview for DSM-5 Personality Disorders (SCID-5-PD) after its translation to the Turkish., Method: The study was carried out with 102 volunteers from two university hospitals. The SCID interview was conducted by two experienced psychiatrists who interchanged positions as interviewer and observer; and completed the research forms without discussing the patient. The diagnostic agreement between the interviewers and the Kappa coefficient were calculated. Divergent and convergent validity analyses were carried out for diagnostic validity and the scores obtained from the self-report form as well as the dimensional evaluation scores were used in the statistical analyses., Results: The group mean age for volunteers was 39.6±11.6 years and 66.7% consisted of females. The Kappa values for personality categories were 0.79 for avoidant personality structure, 0.64 for dependent personality structure, 0.81 for obsessive-compulsive personality structure, 0.76 for paranoid personality structure, 0.49 for schizotypal personality structure, 0.90 for histrionic personality structure, 0.66 for narcissistic personality structure, 0.89 for borderline personality structure and 0.71 for antisocial personality structure. Dimensional evaluation showed significant correlation with the diagnostic agreement between the interviewers and also with the scores of the self-report forms completed by the participants., Conclusion: The results demosntrated that the Turkish version of the Structured Clinical Interview for DSM-5 Personality Disorders (SCID- 5-PD-CV-TR) is valid and reliable.
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- 2021
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22. Experimental Breast Cancer Models: Preclinical Imaging Perspective.
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Korkmaz U and Ustun F
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- Animals, Disease Models, Animal, Female, Mice, Precision Medicine methods, Rats, Breast Neoplasms diagnostic imaging, Breast Neoplasms pathology, Diagnostic Imaging methods
- Abstract
Background: Breast cancer is the leading cause of cancer in women. 13% of breast cancer patients are at a distant stage and mortality is due to metastases rather than primary disease. The unique genetic structure and natural process of breast cancer make it a very suitable area for targeted therapies. Experimental tumor models are validated methods to examine the pathogenesis of cancer, the onset of the neoplastic process and progression., Objective: This study aims to review the current literature on experimental breast cancer models and to bring a new perspective to the use of these models in teranostic preclinical studies in terms of the imaging., Methods: Search for relevant literature from academic databases using keywords (Breast cancer, theranostic, preclinical imaging, tumor models, animal study, and tailored therapy) was conducted. The full text of the articles was reached and reviewed. Current scientific data has been reevaluated and compiled according to subtitles., Results and Conclusion: The development of animal models for breast cancer research has been done in the last century. Imaging methods used in breast cancer are used for tumor localization, quantification of tumor mass, imaging of genes and proteins, evaluation of tumor microenvironment, evaluation of tumor cell proliferation and metabolism and treatment response evaluation. Since human breast cancer is a heterogeneous group of diseases in terms of genetics and phenotype; it is not possible for a single model to adequately address all aspects of breast cancer biology. Considering that each model has advantages and disadvantages, the most suitable model should be chosen to verify the thesis of the study., (Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.net.)
- Published
- 2021
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23. Evaluation of Sarcopenia with F-18 FDG PET/CT and relation with disease outcomes in patients with multiple myeloma.
- Author
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Umit EG, Korkmaz U, Baysal M, Karaman Gulsaran S, Bas V, Demirci U, Onur Kirkizlar H, Durmus Altun G, and Muzaffer Demir A
- Subjects
- Female, Fluorodeoxyglucose F18, Humans, Infant, Newborn, Male, Positron Emission Tomography Computed Tomography, Radiopharmaceuticals, Retrospective Studies, Tomography, X-Ray Computed, Multiple Myeloma complications, Multiple Myeloma diagnostic imaging, Sarcopenia diagnostic imaging, Sarcopenia etiology
- Abstract
Introduction: Multiple myeloma (MM) is a potentially incurable haematological malignancy with devastating manifestations including lytic bone lesions leading to fractures and renal insufficiency. As a disease of patients with a mean age of 66 years, both the disease and the continuous efforts of treatments lead to frailty and devastation. From this stand point, we aimed to evaluate the development of muscle loss in MM patients and also with a new method of sarcopenia evaluation, F-18 FDG PET/CT. While used for bone disease routinely, this method brings a fresh perspective of metabolic quantitation of alteration of muscles which may be regarded as muscle quality., Materials and Methods: Data and images of 105 patients with MM both before and after treatment were evaluated in a retrospective manner., Results: Both female and male patients were observed to be effected after MM treatment in terms of lumbar and femoral muscle evaluations with CT. Metabolic evaluations confirmed a loss of quality in muscles in terms of metabolic volume and total lesion glycolysis., Conclusion: Sarcopenia should be evaluated in every patient and regarded as a treatment target. FDG PET/CT is an easy and handy tool to assess muscle mass and quality as well as MM disease status., (© 2020 John Wiley & Sons Ltd.)
- Published
- 2020
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24. The relationship between FDG PET/CT-defined metabolic parameters and the histopathological subtype of oesophageal carcinomas.
- Author
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Korkmaz U, Hacioglu MB, Kostek O, Sut N, Kodaz H, Erdogan B, Ustun F, Saynak M, Tastekin E, Cicin I, and Durmus-Altun G
- Abstract
Purpose: 18F-fluorodeoxyglucose (
18 F-FDG) positron emission tomography (PET) combined with computed tomography (CT) scan is accepted as a standard tool in the staging of oesophageal cancer (OC). Histological subtype of tumour is known to be a major determinant of prognosis and metabolic behaviour. In this study, we aimed to evaluate the effect of histological subtypes of OC on standard uptake value (SUVmax ), metabolic tumour volume (MTV), and total lesion glycolysis (TLG) obtained by PET/CT, and also to compare this effect with prognosis., Material and Methods: Images and clinical course data of 57 patients who were diagnosed with EC and treated in our hospital between 2009 and 2016 were evaluated in a retrospective manner. PET/CT images were re-analysed in terms of metabolic parameters, and observations were compared with histological subtypes., Results: No significant difference was observed between histological subtypes with SUVmax , overall survival (OS), or progression-free survival (PFS). Thus, MTV was observed to be related with histological subtype; MTV values of adenocancer patients were significantly higher than those of squamous cell cancer patients., Conclusions: Metabolic tumour volume was related with histological subtype of OC, but clinical staging, TLG, and SUVmax values were not related with histological subtype, which may suggest the use of MTV as a routine parameter for OC and inclusion of MTV observations in prognostic scoring., Competing Interests: The authors report no conflict of interest., (Copyright © Polish Medical Society of Radiology 2020.)- Published
- 2020
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25. 18 F-NaF PET/CT and Extraordinary Involvement: Non-calcific Brain Involvement in a Prostate Cancer Case
- Author
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Korkmaz U and Ustun F
- Abstract
With the increase in the diagnosis of the cancer, the frequency of using imaging methods for diagnosis and for staging is also increased. Because of the complex structure of cancer and tumor behavior, the assessment methods have been updated and metabolic imaging has gained weight. The most popular of these techniques is hybrid positron emission tomography/computed tomography (PET/CT) systems. Prostate cancer is the second most common cancer in the world, is the fifth common type in cancer-related male deaths. Estimation of prognosis and treatment planning of the patients are based on the TNM classification. Bone metastasis is a prognostic factor of morbidity and mortality in prostate cancer. Sodium fluoride (NaF) PET/CT is a promising imaging modality in evaluation of skeletal system. This article will review the involvement of
18 F-NaF in extra-osseous tissues in the prostate cancer and reveal the fundamental differences between18 F-NaF imaging and18 F-FDG imaging in these areas.- Published
- 2020
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26. Assembling seed dormancy genes into a system identified their effects on seedbank longevity in weedy rice.
- Author
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Pipatpongpinyo W, Korkmaz U, Wu H, Kena A, Ye H, Feng J, and Gu XY
- Subjects
- Alleles, Genes, Plant, Quantitative Trait Loci, Germination genetics, Oryza genetics, Plant Dormancy genetics, Seed Bank, Seeds growth & development
- Abstract
Seed dormancy (SD) and longevity (SL) may share developmental and genetic mechanisms, as both traits are developed in the same maternal environment and evolved to coordinate the timing of germination and the life span of seedbanks. To test the hypothesis, allelic variants at the SD1-2, 7-1, 7-2, and 12 loci from weedy and cultivated rice (Oryza sativa) were assembled into the same genetic background, and 16 homozygous lines selected as a tetragenic system. These lines were evaluated for SD measured by germination at 7, 21, 35, and 150 days of after-ripening (DAR), and for SL measured by the seed decay rate and survivability in the soil of a rice field for 7 months. Pyramiding the alleles from weedy rice lengthened the dormancy duration, and seeds survived in the soil remained dormant at the excavation. Germination levels at 7 to 150 DAR were correlated positively with the seed decay rate (r = 0.41-0.53) and negatively with the survivability (r = -0.45 to -0.28) in the tetragenic system. All four loci contributed to genotypic variation for each of the SD and SL measurements through main and/or epistatic (two- to four-order interactions) effects. SD7-1 (identical to the pericarp color gene Rc) played a major role in regulating seedbank longevity when interacted with the other SD gene(s). This research provided evidence that natural genes controlling SD are involved in regulation of soil seedbank longevity. Thus, accumulation of SD genes in a population could result in persistence of wild plants and weeds in conventional tillage systems.
- Published
- 2020
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27. A possible connection between circulating 25-hydroxy-vitamin D and molecular response in chronic myeloid leukemia.
- Author
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Gediz F, Oruk GG, Korkmaz UB, Aksun S, Calan M, Savasoglu K, Yilmaz AF, and Payzin KB
- Subjects
- Calcifediol, Cross-Sectional Studies, Female, Humans, Male, Leukemia, Myelogenous, Chronic, BCR-ABL Positive blood, Leukemia, Myelogenous, Chronic, BCR-ABL Positive therapy, Vitamin D blood, Vitamin D Deficiency
- Abstract
Objective: In this study we aimed to evaluate whether there is a link between circulating 25-OH-D levels and molecular response in chronic myeloid leukemia (CML)., Material and Method: A total of 61 patients with CML (31 women, 30 men) were recruited in this cross-sectional study., Results: Binary logistic regression analysis demonstrated that increased vitamin D levels were independently associated with molecular response in subjects with CML., Conclusion: Our results indicated for the first time in the literature that severe deficiency of vitamin D was independently associated with molecular unresponsiveness in subjects with CML. 25-OH-D may be contributing to molecular response in the patients (Tab. 3, Ref. 24).
- Published
- 2020
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28. Epidemiologic features of ınflammatory bowel disease in Western Blacksea region of Turkey for the last 10 years: retrospective cohort study.
- Author
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Can G, Poşul E, Yılmaz B, Can H, Korkmaz U, Ermiş F, Kurt M, and Dağlı Ü
- Subjects
- Adolescent, Adult, Aged, Female, Humans, Incidence, Male, Middle Aged, Prevalence, Retrospective Studies, Turkey epidemiology, Young Adult, Colitis, Ulcerative epidemiology, Crohn Disease epidemiology
- Abstract
Background/aims: There are only a few epidemiological study about inflammatory bowel disease in the last 10 years in Turkey, especially in Western Blacksea region. In our study, we aimed to identify the changes in the incidence and the prevalence of inflammatory bowel disease in Western Blacksea region at the last 10 years., Methods: Totally 223 patients with inf lammatory bowel disease (160 ulcerative colitis, 63 Crohn's disease) were enrolled in the study followed up between 2004 to 2013 years. The epidemiological characteristics of patients were recorded., Results: The prevalences were 12.53/105 and 31.83/105 for Crohn's disease and ulcerative colitis respectively. Mean annual incidences increased from 0.99/105 and 0.45/105 for ulcerative colitis and Crohn's disease (2004 to 2005 years) to 4.87/105 and 2.09/105 for ulcerative colitis and Crohn's disease respectively (2011 to 2013 years). While the prevalence was higher in urban areas in Crohn's disease (12.60/105 ), it was higher in rural areas in ulcerative colitis (36.17/105 ). In ulcerative colitis, mean annual incidences were 2.91/105 and 2.86/105 for urban and rural areas respectively. In Crohn's disease, they were 1.37/105 and 1.08/105 for urban and rural areas respectively., Conclusion: The incidence of inflammatory bowel disease seems to increase in Western Blacksea region at the last 10 years. This increment is more prevalent in rural areas.
- Published
- 2019
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29. Differential diagnosis of Crohn's disease using antibodies to glycoprotein 2 and Saccharomyces cerevisiae.
- Author
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Duman AE, Hülagü S, Çelebi A, Korkmaz U, Musul MM, Şentürk Ö, Şirin G, Yılmaz H, Koç DÖ, Dindar G, Öztürkler M, Bozkurt N, and Kır HM
- Subjects
- Adult, Biomarkers, Case-Control Studies, Colitis, Ulcerative diagnosis, Diagnosis, Differential, Female, Humans, Male, Predictive Value of Tests, Sensitivity and Specificity, Seroepidemiologic Studies, Antibodies, Fungal blood, Autoantibodies blood, Crohn Disease diagnosis, GPI-Linked Proteins immunology, Saccharomyces cerevisiae immunology
- Abstract
Background/aims: Glycoprotein 2 (GP2), the major autoantigen of Crohn's disease (CD)-specific pancreatic autoantibodies, is reportedly correlated with several characteristics of CD. We investigated this serological marker in Turkish patients with CD and assessed its utility in combination with anti-Saccharomyces cerevisiae antibodies (ASCAs) for differential diagnosis of CD., Materials and Methods: A total of 60 patients with CD, 62 patients with ulcerative colitis (UC), and 46 healthy controls with a definite diagnosis who were similar in age and sex were enrolled in the study conducted from November 2011 to October 2012. ASCA and anti-GP2 levels were measured using commercially available kits., Results: Anti-GP2 IgA and IgG levels were higher in patients with CD (25%) than in those with UC (5%) and controls (2%). The seroprevalence of anti-GP2 IgA was markedly higher than that of IgG in patients with CD in contrast to previous studies. The specificity and positive predictive value of seropositivity for both ASCA and anti-GP2 were 100%. ASCA IgA seropositivity was correlated with a complicated disease course and a history of surgery. There was no correlation between anti-GP2 seropositivity and disease location, disease behavior, or a history of surgery., Conclusion: The combination of ASCA and anti-GP2 may enable differentiation of CD from UC. As ASCA seropositivity is associated with a more complicated disease course, patients seropositive for ASCA at the initial diagnosis should undergo more intense therapy.
- Published
- 2019
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30. TETANY WITH HYPOMAGNESEMIA, HYPOKALEMIA, AND HYPOCALCEMIA AS INITIAL PRESENTATION OF CELIAC DISEASE.
- Author
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Posul E, Can G, Tekelioglu V, Yilmaz B, Korkmaz U, Ozyalvacli G, Kilitci A, and Kurt M
- Subjects
- Adult, Celiac Disease diagnosis, Female, Humans, Celiac Disease complications, Hypocalcemia etiology, Hypokalemia etiology, Magnesium Deficiency etiology, Tetany etiology
- Published
- 2018
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31. Hypertensive pulmonary edema related to desmopressin acetate.
- Author
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Korkmaz U, Demir E, Yazici H, and Sever MS
- Subjects
- Adult, Female, Humans, Male, Middle Aged, Deamino Arginine Vasopressin adverse effects, Hypertension, Pulmonary chemically induced, Pulmonary Edema chemically induced
- Published
- 2017
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32. Crystal structure of 2-(aza-niumylmeth-yl)pyridinium bis(hydrogen squarate).
- Author
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Salamzadeh N, Demircioglu Z, Korkmaz U, and Büyükgüngör O
- Abstract
The asymmetric unit of the title compound, C
6 H10 N2 2+ ·2C4 HO4 - , comprises two hydrogen squarate (Hsq- ; systematic name: 2-hy-droxy-3,4-dioxo-cyclo-butano-late) anions and a 2-(aza-niumylmeth-yl)pyridinium dication. The squaric acid mol-ecules each donate an H atom to the N atoms of the pyridine ring and the amino-methyl units of a 2-(amino-meth-yl)pyridine mol-ecule, forming the 1:2 salt. The Hsq- anions are linked by strong O-H⋯O hydrogen bonds and an N-H⋯O hydrogen bond links the 2-(aza-niumylmeth-yl)pyridinium cation to one of the squaric acid anions. The crystal structure features additional N-H⋯O and O-H⋯O hydrogen bonds, π-π stacking and unusual weak C-O⋯π(ring) inter-actions.- Published
- 2017
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33. The efficacy of tyrosine kinase inhibitor dasatinib on colonic mucosal damage in murine model of colitis.
- Author
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Can G, Ayvaz S, Can H, Karaboğa İ, Demirtaş S, Akşit H, Yılmaz B, Korkmaz U, Kurt M, and Karaca T
- Subjects
- Animals, Colitis pathology, Colon metabolism, Colon pathology, Disease Models, Animal, Intestinal Mucosa pathology, Malondialdehyde metabolism, Peroxidase metabolism, Rats, Sprague-Dawley, Superoxide Dismutase metabolism, Weight Loss, Colitis drug therapy, Dasatinib pharmacology, Protein Kinase Inhibitors pharmacology
- Abstract
Background and Objective: Ulcerative colitis is an inflammatory condition of the colon in the gastrointestinal system. Currently, the most potent medications used for ulcerative colitis produce no response in 20-30% of cases. There is a need for more efficient and reliable medications. Tyrosine kinase inhibitors have shown efficacy in some inflammatory diseases. Although dasatinib, a tyrosine kinase inhibitor, suppresses proinflammatory cytokines in colonic tissue, there are a few cases of hemorrhagic colitis with dasatinib. There is no study investigating the effect of dasatinib on experimental colitis. We aimed to investigate the effect of dasatinib in a colitis model induced with acetic acid in our study., Methods: In the study, 24 male Sprague-Dawley rats randomly distributed into 4 groups of 6 rats each as control, dasatinib, colitis and dasatinib+colitis groups. For colitis induction, 4% acetic acid was used. Sacrificing of the rats was performed on the seventh day. Disease activity, morphologic and histological injury, superoxide dismutase, myeloperoxidase and malondialdehyde activity, TNFα and CD3 expression were assessed in colonic tissue., Results: Apart from malondialdehyde, significant difference in all parameters between the control and colitis groups was determined. Difference between the colitis and colitis+dasatinib groups was not significant in only weight loss and biochemical parameters. Though dasatinib does not fully resolve the changes in colitis, there was significant regression., Conclusions: Dasatinib decreased the inflammation in a rodent model of colitis. It may be provide this effect by the suppression of TNFα. Dasatinib may be one of the treatment options for ulcerative colitis., (Copyright © 2016 Elsevier Masson SAS. All rights reserved.)
- Published
- 2016
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34. Intrathoracic toxic thyroid nodule causing hyperthyroidism with a multinodular normal functional cervical thyroid gland.
- Author
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Serim BD, Korkmaz U, Can U, and Altun GD
- Abstract
Radionuclide scintigraphy with I-131 and Tc-99m pertechnetate ((99)mTc04) has been widely used in detecting toxic nodules. Intrathoracic goiter usually presents as an anterior mediastinal mass. Mostly the connection between intrathoracic mass and the cervical thyroid gland is clearly and easily identified occurring as a result of inferior extension of thyroid tissue in the neck, which is called as secondary intrathoracic goiter. Completely separated, aberrant or in other words primary intrathoracic goiters arise as a result of abnormal embryologic migration of ectopic thyroid closely associated with aortic sac and descend into the mediastinum. Intrathoracic goiters are generally nontoxic nodules existing with mass effect without causing hyperthyroidism. However, mostly reported cases had enlarged thyroid glands in the neck. This report demonstrates the usefulness of I-131 and (99)mTc04 scintigraphy for detecting intrathoracic goiter causing hyperthyroidism with a normal functioned cervical thyroid gland.
- Published
- 2016
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35. Crystal structure of 2-ethyl-4-methyl-1-(2-oxido-3,4-dioxo-cyclo-but-1-en-1-yl)-1H-imidazol-3-ium.
- Author
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Korkmaz U, Bulut I, and Bulut A
- Abstract
In the title inner salt molecule, C10H10N2O3, the four-membered cyclobutene ring is twisted by 7.1 (2)° with respect to the five-membered imidazole ring. The crystal packing exhibits an R 2 (2)(9) hydrogen-bonding ring motif through N-H⋯O and C-H⋯O inter-actions. The potential non-linear optical properties were studied by a computational ab initio calculations performed at the DFT/B3LYP/6-31++G(d,p) level of theory.
- Published
- 2016
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36. Polymorphisms in the IL28B gene (rs12979860, rs8099917) and the virological response to pegylated interferon therapy in hepatitis D virus patients.
- Author
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Yilmaz B, Can G, Ucmak F, Arslan AO, Solmaz I, Unlu O, Düzenli S, Korkmaz U, Kurt M, and Senates E
- Subjects
- Adolescent, Adult, Aged, Female, Genotype, Hepatitis B Surface Antigens, Hepatitis Delta Virus genetics, Humans, Interferons, Male, Middle Aged, Pharmacogenetics, Polymorphism, Single Nucleotide, Real-Time Polymerase Chain Reaction, Retrospective Studies, Viral Load, Young Adult, Antiviral Agents therapeutic use, Hepatitis D, Chronic drug therapy, Interferon-alpha therapeutic use, Interleukins genetics, Polyethylene Glycols therapeutic use, RNA, Viral blood
- Abstract
Aim: Few data are available regarding the effects of interleukin 28B (IL28B) polymorphisms in chronic hepatitis D (CHD) patients. This study investigated the relationship between IL28B poly-morphisms and the response of patients with CHD infections to pegylated interferon (PEG-IFN) therapy., Materials and Methods: A total of 101 CHD patients were -selected, 80 of whom (46 males ; median age 41 years) satisfied the inclusion criteria and were enrolled in the study. Thirty-seven patients were treated with peg-IFNα for at least 12 months and were followed for a median of 18 months (range, 12-30 months). The primary treatment endpoint was the suppression of HDV replication, as documented by the loss of detectable HDV RNA in serum. Genotyping was used to analyse the IL28B polymorphisms rs12979860 and rs8099917 according to the virological response., Results: After treatment, a sustained viral response (SVR) was achieved in 19 (51%) of the patients treated with PEG-INF. The IL28B genotypes in the 80 patients were as follows : CC in 36 (45%), CT in 33 (41%) and TT in 11 (14%) for rs12979860, and GG in 4 (5%), GT in 27 (34%) and TT in 49 (61%) for rs8099917. SVR was achieved in 5 (26%), 10 (53%) and 4 (21%) patients with CC, CT and TT at rs12979860, respectively, and one (5%), nine (47%) and nine (47%) patients with GG, GT and TT at rs8099917, respectively. There were differences in the SVR among genotypes (rs12979860 and rs8099917 ; chi-squared test, p = 0.047)., Conclusion: IL28B predicts the PEG-IFN response in patients with CHD infection., (© Acta Gastro-Enterologica Belgica.)
- Published
- 2016
37. Age-based computer-aided diagnosis approach for pancreatic cancer on endoscopic ultrasound images.
- Author
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Ozkan M, Cakiroglu M, Kocaman O, Kurt M, Yilmaz B, Can G, Korkmaz U, Dandil E, and Eksi Z
- Abstract
Aim: The aim was to develop a high-performance computer-aided diagnosis (CAD) system with image processing and pattern recognition in diagnosing pancreatic cancer by using endosonography images., Materials and Methods: On the images, regions of interest (ROI) of three groups of patients (<40, 40-60 and >60) were extracted by experts; features were obtained from images using three different techniques and were trained separately for each age group with an Artificial Neural Network (ANN) to diagnose cancer. The study was conducted on endosonography images of 202 patients with pancreatic cancer and 130 noncancer patients., Results: 122 features were identified from the 332 endosonography images obtained in the study, and the 20 most appropriate features were selected by using the relief method. Images classified under three age groups (in years; <40, 40-60 and >60) were tested via 200 random tests and the following ratios were obtained in the classification: accuracy: 92%, 88.5%, and 91.7%, respectively; sensitivity: 87.5%, 85.7%, and 93.3%, respectively; and specificity: 94.1%, 91.7%, and 88.9%, respectively. When all the age groups were assessed together, the following values were obtained: accuracy: 87.5%, sensitivity: 83.3%, and specificity: 93.3%., Conclusions: It was observed that the CAD system developed in the study performed better in diagnosing pancreatic cancer images based on classification by patient age compared to diagnosis without classification. Therefore, it is imperative to take patient age into consideration to ensure higher performance.
- Published
- 2016
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38. The Syk Inhibitor Fostamatinib Decreases the Severity of Colonic Mucosal Damage in a Rodent Model of Colitis.
- Author
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Can G, Ayvaz S, Can H, Demirtas S, Aksit H, Yilmaz B, Korkmaz U, Kurt M, and Karaca T
- Subjects
- Acetic Acid, Aminopyridines, Animals, Colitis etiology, Disease Models, Animal, Intestinal Mucosa pathology, Intracellular Signaling Peptides and Proteins antagonists & inhibitors, Male, Morpholines, Protein-Tyrosine Kinases antagonists & inhibitors, Pyrimidines, Rats, Rats, Sprague-Dawley, Syk Kinase, Colitis drug therapy, Colitis pathology, Oxazines therapeutic use, Pyridines therapeutic use
- Abstract
Background and Aims: Inflammatory bowel disease is a chronic inflammatory disease of the gastrointestinal system. In some cases, current medications used for inflammatory bowel disease may not be enough for remission, creating a need for more potent and reliable medications. There is no study showing the efficacy of fostamatinib, with proven effects on some inflammatory diseases, on ulcerative colitis. In our study we planned to research the efficacy of fostamatinib, a spleen tyrosine kinase inhibitor, on acetic acid-induced colitis., Methods: The study included 28 male Sprague-Dawley rats, randomly divided into control group, fostamatinib group, colitis group and fostamatinib + colitis group, each containing seven rats. Colitis induction was performed with 4% acetic acid. Colonic inflammation was assessed with disease activity index, macroscopic and histological damage scores, colonic myeloperoxidase, malondialdehyde and superoxide dismutase activity, and tumour necrosis factor alpha [TNFα], CD3, Syk, and phospho-Syk expression., Results: There was a significant difference between the colitis and control groups in terms of all parameters. The disease activity index, macroscopic and microscopic damage scores, immunohistochemical TNFα, CD3, Syk, and phospho-Syk expression, and tissue myeloperoxidase activity were found to be significantly lower in the colitis + fostamatinib group compared with the colitis group. There was no significant difference between the two groups in terms of myeloperoxidase and malondialdehyde activity., Conclusions: Fostamatinib reduced the inflammatory damage in the experimental colitis. This effect may be due to suppression of TNFα, T-lymphocytes, and neutrophils in colonic mucosa via suppression of Syk. Fostamatinib may be an appropriate treatment alternative for ulcerative colitis. Further clinical studies are required to support this., (Copyright © 2015 European Crohn’s and Colitis Organisation (ECCO). Published by Oxford University Press. All rights reserved. For permissions, please email: journals.permissions@oup.com.)
- Published
- 2015
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39. Endoscopic clips for the closure of acute iatrogenic perforations: Where do we stand?
- Author
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Yılmaz B, Unlu O, Roach EC, Can G, Efe C, Korkmaz U, and Kurt M
- Subjects
- Acute Disease, Colon injuries, Duodenum injuries, Emergencies, Endoscopy methods, Endoscopy trends, Esophageal Perforation etiology, Female, Forecasting, Humans, Intestinal Perforation etiology, Male, Minimally Invasive Surgical Procedures methods, Patient Safety, Rectum injuries, Stomach Rupture etiology, Treatment Outcome, Endoscopy instrumentation, Esophageal Perforation surgery, Iatrogenic Disease, Intestinal Perforation surgery, Stomach Rupture surgery, Surgical Instruments
- Abstract
Background and Aim: Iatrogenic perforation of the gut during endoscopy remains an uncommon but critical complication with significant morbidity and probable mortality than usual surgical treatment. Some authors have adopted a non-surgical closure method in chosen cases and, since 1993, endoclips have been used to close perforation in the stomach. The endoscopic practice of endoclips has been commonly used in the gut for hemostasis. Currently, the use of endoscopic techniques is increasing for the closure of endoscopic submucosal dissection or endoscopic mucosal resection. Endoscopic perforations that improved with endoscopic closure in the literature prior to 2008 have been previously described. In the present article, we present a descriptive review of cases with iatrogenic perforation in the gut treated with endoclips between 2008 and 2014., Methods: Comprehensive literature screening and a systematic review using PubMed and Medline was done for all reports published between January 2008 and December 2014 using the endoclip technique in the closure of iatrogenic perforations., Results: A total of 47 studies published between 2008 and 2014 using endoclips for the closure of iatrogenic perforations of the gut (nine esophagus, 11 stomach, 15 duodenum, 12 colon and rectum) were found. All studies were explained briefly and summarized in a table., Conclusions: There is strong evidence to show the efficacy of endoclips in the management of iatrogenic perforations, especially when recognized early. Limitations of endoclipping such as inefficiency against large perforations may be overcome by improving novel techniques in the future., (© 2015 The Authors. Digestive Endoscopy © 2015 Japan Gastroenterological Endoscopy Society.)
- Published
- 2015
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40. Ileum and colon perforations in a young patient with Behçet's disease.
- Author
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Kurt Ş, Posul E, Can G, Sit M, Yılmaz B, Korkmaz U, and Kurt M
- Published
- 2015
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41. Crohn's disease presenting as multiple pulmonary nodules in FDG PET/CT scan.
- Author
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Kurt M, Poşul E, Can G, Yılmaz B, Korkmaz U, Kar Kurt Ö, Gürel K, Dağıstan E, and Özyalvaçlı G
- Subjects
- Adult, Diagnosis, Differential, Female, Fluorodeoxyglucose F18, Humans, Multiple Pulmonary Nodules diagnostic imaging, Positron-Emission Tomography, Radiopharmaceuticals, Tomography, X-Ray Computed, Crohn Disease complications, Multiple Pulmonary Nodules etiology
- Published
- 2015
- Full Text
- View/download PDF
42. 3-Phenylpyridinium hydrogen squarate: experimental and computational study of a nonlinear optical material.
- Author
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Korkmaz U, Bulut A, and Bulut İ
- Subjects
- Crystallography, X-Ray, Dimerization, Hydrogen Bonding, Models, Molecular, Molecular Conformation, Spectrophotometry, Ultraviolet, Spectroscopy, Fourier Transform Infrared, Cyclobutanes chemistry, Pyridines chemistry
- Abstract
The detailed investigation of an organic nonlinear optical (NLO) squarate salt of 3-phenylpyridinium hydrogen squarate (1), C11H10N+·C4HO4(-), was reported in this study. The XRD data indicates that the crystal structure of the title compound is in the triclinic P-1 space group. In the asymmetric unit, the 3-phenylpyridine molecule is protonated by one hydrogen atom donation of squaric acid molecule, forming the salt (1). The X-ray analysis shows that the crystal packing has hydrogen bonding ring pattern of D2(2)(10) (α-dimer) through NH···O interactions. The structural and vibrational properties of the compound were also studied by computational methods of ab initio at DFT/B3LYP/6-31++G(d,p) (2) and HF/6-31++G(d,p) (3) levels of theory. The calculation results on the basis of two models for both the optimized molecular structure and vibrational properties for the 1 are presented and compared with the experimental results. Non-linear optical properties (NLO) of the title compound together with the molecular electrostatic potential (MEP), electronic absorption spectrum, frontier molecular orbitals (FMOs) and conformational flexibility were also studied at the 2 level and the results were reported. In order to evaluate the suitability for NLO applications thermal analysis (TG, DTA and DTG) data of 1 were also obtained., (Copyright © 2014 Elsevier B.V. All rights reserved.)
- Published
- 2015
- Full Text
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43. Achalasia secondary to lung adenocarcinoma.
- Author
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Can B, Balli F, Korkmaz U, Yilmaz H, Can FI, and Celebi A
- Subjects
- Adenocarcinoma diagnosis, Adenocarcinoma of Lung, Aged, Esophageal Achalasia diagnosis, Esophageal Achalasia physiopathology, Esophageal Sphincter, Upper physiopathology, Humans, Lung Neoplasms diagnosis, Male, Neoplasm Staging, Predictive Value of Tests, Risk Factors, Tomography, X-Ray Computed, Adenocarcinoma complications, Esophageal Achalasia etiology, Lung Neoplasms complications
- Published
- 2015
- Full Text
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44. 2-Pyridinium propanol hydrogen squarate: experimental and computational study of a nonlinear optical material.
- Author
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Korkmaz U and Bulut A
- Subjects
- Crystallography, X-Ray, Differential Thermal Analysis, Electrons, Hydrogen Bonding, Molecular Conformation, Spectroscopy, Fourier Transform Infrared, Static Electricity, Thermogravimetry, Vibration, Cyclobutanes chemistry, Models, Molecular, Nonlinear Dynamics, Optical Phenomena, Propanols chemistry, Pyridinium Compounds chemistry
- Abstract
The experimental and theoretical investigation of a novel organic nonlinear optical (NLO) squarate salt of 2-pyridinium propanol hydrogen squarate (1), C8H12ON(+)·C4HO4(-), were reported in this study. The crystal structure of the title compound was found to crystallize in the triclinic P-1 space group. In the asymmetric unit each squaric acid molecules have donated one H atom to the pyridines N1 and N2 atoms of a 2-pyridine propanol molecule, forming the salt (1). The X-ray analysis clearly indicated that the crystal packing has shown the hydrogen bonding ring pattern of D2(2)(10) (α-dimer) through N-H⋯O interactions. The structural and vibrational properties of the compound were also studied by computational methods of ab initio performed on the compound at DFT/B3LYP/6-31++G(d,p) (2) and HF/6-31++G(d,p) (3) level of theory. The calculation results on the basis of two models for both the optimized molecular structure and vibrational properties for the 1 are presented and compared with the X-ray analysis result. The molecular electrostatic potential (MEP), electronic absorption spectra, frontier molecular orbitals (FMOs), conformational flexibility and non-linear optical properties (NLO) of the title compound were also studied at the 2 level and the results are reported. In order to evaluate the suitability for NLO applications thermal analysis (TG, DTA and DTG) data of 1 were also obtained., (Copyright © 2014 Elsevier B.V. All rights reserved.)
- Published
- 2015
- Full Text
- View/download PDF
45. Synthesis, an experimental and quantum chemical computational study: proton sharing in 4-Morpholinium bis(hydrogen squarate).
- Author
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Korkmaz U, Topçu Y, Taş M, and Bulut A
- Subjects
- Chemistry Techniques, Synthetic, Crystallography, X-Ray, Cyclobutanes chemical synthesis, Hydrogen Bonding, Models, Molecular, Molecular Conformation, Molecular Structure, Morpholines chemical synthesis, Protons, Spectrophotometry, Infrared, Spectrophotometry, Ultraviolet, Spectroscopy, Fourier Transform Infrared, Static Electricity, Cyclobutanes chemistry, Morpholines chemistry, Quantum Theory
- Abstract
The experimental and theoretical investigation results of a novel organic squarate salt of 4-Morpholinium bis(hydrogen squarate) (1), C₆H₁₄ON(+)·C₈H₃O₈(-), were reported in this study. The crystal structure of the title compound was found to crystallize in the triclinic P-1 space group. In the crystals of 1 the morpholine ring adopts the chair conformation with the ethyl group in the equatorial and hydrogen atoms in axial positions. The hydrogen squarate anions are linked into a homoconjugated anion, [(HSQ)₂H], by a short symmetric, nonlinear O₈⋯H₂⋯O₂ hydrogen bond of 2.444 (2)Å. The structural and vibrational properties of the compound were also studied by computational methods of ab-initio performed on the compound at DFT/B3LYP/6-31++G(d,p) (2) and HF/6-31++G(d,p) (3) level of theory. The obtained calculation results on the basis of two models for both the optimized molecular structure and vibrational properties for the 1 obtained are presented and compared with the X-ray analysis result. On the other hand the molecular electrostatic potential (MEP), electronic absorption spectra, frontier molecular orbitals (FMOs), conformational flexibility and non-linear optical properties (NLO) of the title compound were also studied at the 2 level and the results are reported. In order to evaluate the suitability for NLO applications thermal analysis (TG, DTA and DTG) data of 1 were also obtained., (Copyright © 2014 Elsevier B.V. All rights reserved.)
- Published
- 2015
- Full Text
- View/download PDF
46. The relationship between fibrosis level and blood neutrophil to lymphocyte ratio in inactive hepatitis B carriers.
- Author
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Yilmaz B, Aydin H, Can G, Şentürk Z, Üstüner B, Yilmaz H, Öztürkler M, Roach EC, Korkmaz U, Kurt M, Çelebi A, Şentürk Ö, and Hülagü S
- Subjects
- Adult, Biopsy, Female, Hepatitis B blood, Hepatitis B complications, Hepatitis B pathology, Humans, Liver Cirrhosis blood, Liver Cirrhosis pathology, Liver Cirrhosis virology, Lymphocyte Count, Male, Middle Aged, Predictive Value of Tests, Severity of Illness Index, Time Factors, Hepatitis B diagnosis, Liver Cirrhosis diagnosis, Lymphocytes, Neutrophils
- Abstract
Aim: Neutrophil-lymphocyte ratio (NLR) has been used as a simple, affordable, and easily accessible marker to predict prognosis in a variety of inflammatory and neoplastic diseases. However, there are few studies investigating their role in patients with hepatitis B. The aim of this study was to investigate the relationship between NLR and liver fibrosis in patients who were being followed as inactive hepatitis B carriers., Materials and Methods: The study included 78 patients who were followed for 1 year as inactive hepatitis B carriers. Liver biopsy was performed and the fibrosis scores of the histological activity index were assessed according to the Metavir scoring system. The patients were divided into two groups on the basis of the fibrosis scores: those with a score below 2 and those with a score above 2. In both groups, demographic data such as sex, age, and BMI were similar. The NLR of patients was calculated from blood samples taken at the same time as the biopsy., Results: Histopathologic analysis of 78 patients showed that 41 (53%) had fibrosis grade 0-1 and 37 (47%) patients had fibrosis grade greater than 2. According to the biopsy results, there were no cirrhotic patients. NLR was found to be statistically significantly lower in the group with fibrosis grade of at least 2 (1.51±0.61 vs. 1.79±0.64, P=0.043). Other biochemical and hematological data were found to be similar in both groups. No correlation was found between laboratory values and NLR. In addition, there was no correlation between NLR with histologic activity. Spearman correlation analysis showed a negative correlation between the fibrosis score and NLR (r=-0.279, P=0.013)., Conclusion: In inactive hepatitis B carriers, the histological activity index and NLR were found to be correlated negatively. NLR can be used as a predictor of fibrosis in combination with other noninvasive markers.
- Published
- 2014
- Full Text
- View/download PDF
47. Endoscopic removal of gastric bezoars: an easy technique.
- Author
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Kurt M, Posul E, Yilmaz B, and Korkmaz U
- Subjects
- Humans, Male, Middle Aged, Bezoars surgery, Gastroscopy methods, Stomach surgery
- Published
- 2014
- Full Text
- View/download PDF
48. Synthesis, an experimental and quantum chemical computational study of a new nonlinear optical material: 2-picolinium hydrogensquarate.
- Author
-
Korkmaz U and Bulut A
- Subjects
- Anions, Crystallization, Cyclobutanes chemical synthesis, Dimerization, Hydrogen Bonding, Molecular Conformation, Nitrogen chemistry, Optics and Photonics, Picolines chemical synthesis, Quantum Theory, Software, Spectrophotometry, Infrared, Spectrophotometry, Ultraviolet, Temperature, X-Ray Diffraction, Cyclobutanes chemistry, Hydrogen chemistry, Picolines chemistry
- Abstract
The experimental and theoretical investigation results of a novel organic non-linear optical (NLO) organic squarate salt of 2-Picolinium hydrogensquarate (1), C6H8N+·C4HO4-, were reported in this study. The space group of the title compound was found in the monoclinic C2/c space group. It was found that the asymmetric unit consists of one monohydrogen squarate anion together with mono protonated 2-Picolinium, forming the (1) salt. The X-ray analysis clearly indicated that the crystal packing has shown the hydrogen bonding ring pattern of D2(2)(10) (α-dimer) through NH⋯O interactions. The hydrogensquarate anions form α-dimer, while 2-Picolinium molecule interacts through NH⋯O and CH⋯O with the hydrogensquarate anion. The structural and vibrational properties of the compound were also studied by computational methods of ab initio performed on the compound at DFT/B3LYP/6-31++G(d,p) (2) and HF/6-31++G(d,p) (3) level of theory. The calculation results on the basis of two models for both the optimized molecular structure and vibrational properties for the 1 obtained are presented and compared with the X-ray analysis result. On the other the molecular electrostatic potential (MEP), electronic absorption spectra, frontier molecular orbitals (FMOs), conformational flexibility and non-linear optical properties (NLO) of the title compound were also studied at the 2 level and the results are reported. In order to evaluate the suitability for NLO applications thermal analysis (TG, DTA and DTG) data of 1 were also obtained., (Copyright © 2014 Elsevier B.V. All rights reserved.)
- Published
- 2014
- Full Text
- View/download PDF
49. Rare complication of upper gastrointestinal endoscopy: bilateral swelling of parotid glands.
- Author
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Can G, Yilmaz B, Posul E, Taslamacioğlu T, Korkmaz U, and Kurt M
- Subjects
- Humans, Male, Middle Aged, Endoscopy, Gastrointestinal adverse effects, Parotitis etiology, Parotitis pathology
- Published
- 2014
50. Are MR Compatible hemoclips safe after control of hemostasis?
- Author
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Kurt M, Posul E, Tekelioglu V, Yilmaz B, Korkmaz U, and Kizildag B
- Subjects
- Aged, 80 and over, Esophagoscopy, Hemostasis, Endoscopic methods, Humans, Lacerations, Magnetic Resonance Imaging, Male, Esophageal Diseases therapy, Gastrointestinal Hemorrhage therapy, Hemostasis, Endoscopic adverse effects, Surgical Instruments adverse effects
- Published
- 2014
- Full Text
- View/download PDF
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