148 results on '"Kolbe S."'
Search Results
2. Cognitive processing speed deficits in multiple sclerosis: Dissociating sensorial and motor processing changes from cognitive processing speed
- Author
-
Clough, M., Dobbing, J., Stankovich, J., Ternes, A., Kolbe, S., White, O.B., and Fielding, J.
- Published
- 2020
- Full Text
- View/download PDF
3. An Update on the Measurement of Motor Cerebellar Dysfunction in Multiple Sclerosis
- Author
-
Kenyon, KH, Boonstra, F, Noffs, G, Butzkueven, H, Vogel, AP, Kolbe, S, van der Walt, A, Kenyon, KH, Boonstra, F, Noffs, G, Butzkueven, H, Vogel, AP, Kolbe, S, and van der Walt, A
- Abstract
Multiple sclerosis (MS) is a progressive disease that often affects the cerebellum. It is characterised by demyelination, inflammation, and neurodegeneration within the central nervous system. Damage to the cerebellum in MS is associated with increased disability and decreased quality of life. Symptoms include gait and balance problems, motor speech disorder, upper limb dysfunction, and oculomotor difficulties. Monitoring symptoms is crucial for effective management of MS. A combination of clinical, neuroimaging, and task-based measures is generally used to diagnose and monitor MS. This paper reviews the present and new tools used by clinicians and researchers to assess cerebellar impairment in people with MS (pwMS). It also describes recent advances in digital and home-based monitoring for people with MS.
- Published
- 2023
4. Production and optimization of polyesterases for the sustainable modification and degradation of textile polyester
- Author
-
Hilgenberg, B., primary, Kolbe, S., additional, Koprionik, J., additional, Lobanov, A., additional, Bergstedt, U., additional, Rabe, M., additional, and Wagner, M., additional
- Published
- 2022
- Full Text
- View/download PDF
5. Process Development and Manufacturing: ENHANCEMENT OF BIOACTIVE AND CELL-LABELING PEPTIDES WITH DNA-TEMPLATED MULTIVALENCE
- Author
-
Möser, C., primary, Freitag, J., additional, Kolbe, S., additional, and Smith, D.M., additional
- Published
- 2022
- Full Text
- View/download PDF
6. Artificial intelligence extension of the OSCAR-IB criteria
- Author
-
Petzold, A., Albrecht, P., Balcer, L., Bekkers, E., Brandt, A. U., Calabresi, P. A., Deborah, O. G., Graves, J. S., Green, A., Keane, P. A., Nij Bijvank, J. A., Sander, J. W., Paul, F., Saidha, S., Villoslada, P., Wagner, S. K., Yeh, E. A., Aktas, O., Antel, J., Asgari, N., Audo, I., Avasarala, J., Avril, D., Bagnato, F. R., Banwell, B., Bar-Or, A., Behbehani, R., Manterola, A. B., Bennett, J., Benson, L., Bernard, J., Bremond-Gignac, D., Britze, J., Burton, J., Calkwood, J., Carroll, W., Chandratheva, A., Cohen, J., Comi, G., Cordano, C., Costa, S., Costello, F., Courtney, A., Cruz-Herranz, A., Cutter, G., Crabb, D., Delott, L., De Seze, J., Diem, R., Dollfuss, H., El Ayoubi, N. K., Fasser, C., Finke, C., Fischer, D., Fitzgerald, K., Fonseca, P., Frederiksen, J. L., Frohman, E., Frohman, T., Fujihara, K., Cuellar, I. G., Galetta, S., Garcia-Martin, E., Giovannoni, G., Glebauskiene, B., Suarez, I. G., Jensen, G. P., Hamann, S., Hartung, H. -P., Havla, J., Hemmer, B., Huang, S. -C., Imitola, J., Jasinskas, V., Jiang, H., Kafieh, R., Kappos, L., Kardon, R., Keegan, D., Kildebeck, E., Kim, U. S., Klistorner, S., Knier, B., Kolbe, S., Korn, T., Krupp, L., Lagreze, W., Leocani, L., Levin, N., Liskova, P., Preiningerova, J. L., Lorenz, B., May, E., Miller, D., Mikolajczak, J., Said, S. M., Montalban, X., Morrow, M., Mowry, E., Murta, J., Navas, C., Nolan, R., Nowomiejska, K., Oertel, F. C., Oh, J., Oreja-Guevara, C., Orssaud, C., Osborne, B., Outteryck, O., Paiva, C., Palace, J., Papadopoulou, A., Patsopoulos, N., Pontikos, N., Preising, M., Prince, J., Reich, D., Rejdak, R., Ringelstein, M., Rodriguez de Antonio, L., Sahel, J. -A., Sanchez-Dalmau, B., Sastre-Garriga, J., Schippling, S., Schuman, J., Shindler, K., Shin, R., Shuey, N., Soelberg, K., Specovius, S., Suppiej, A., Thompson, A., Toosy, A., Torres, R., Touitou, V., Trauzettel-Klosinski, S., van der Walt, A., Vermersch, P., Vidal-Jordana, A., Waldman, A. T., Waters, C., Wheeler, R., White, O., Wilhelm, H., Winges, K. M., Wiegerinck, N., Wiehe, L., Wisnewski, T., Wong, S., Wurfel, J., Yaghi, S., You, Y., Yu, Z., Yu-Wai-Man, P., Zemaitien≐, R., Zimmermann, H., Albrecht P., Petzold A., Balcer, L., Bekkers, E., Brandt, A. U., Calabresi, P. A., Deborah, O. G., Graves, J. S., Green, A., Keane, P. A., Nij Bijvank, J. A., Sander, J. W., Paul, F., Saidha, S., Villoslada, P., Wagner, S. K., Yeh, E. A., Aktas, O., Antel, J., Asgari, N., Audo, I., Avasarala, J., Avril, D., Bagnato, F. R., Banwell, B., Bar-Or, A., Behbehani, R., Manterola, A. B., Bennett, J., Benson, L., Bernard, J., Bremond-Gignac, D., Britze, J., Burton, J., Calkwood, J., Carroll, W., Chandratheva, A., Cohen, J., Comi, G., Cordano, C., Costa, S., Costello, F., Courtney, A., Cruz-Herranz, A., Cutter, G., Crabb, D., Delott, L., De Seze, J., Diem, R., Dollfuss, H., El Ayoubi, N. K., Fasser, C., Finke, C., Fischer, D., Fitzgerald, K., Fonseca, P., Frederiksen, J. L., Frohman, E., Frohman, T., Fujihara, K., Cuellar, I. G., Galetta, S., Garcia-Martin, E., Giovannoni, G., Glebauskiene, B., Suarez, I. G., P. , Jensen, G., Hamann, S., Hartung, H. -P., Havla, J., Hemmer, B., Huang, S. -C., Imitola, J., Jasinskas, V., Jiang, H., Kafieh, R., Kappos, L., Kardon, R., Keegan, D., Kildebeck, E., Kim, U. S., Klistorner, S., Knier, B., Kolbe, S., Korn, T., Krupp, L., Lagreze, W., Leocani, L., Levin, N., Liskova, P., Preiningerova, J. L., Lorenz, B., May, E., Miller, D., Mikolajczak, J., Said, S. M., Montalban, X., Morrow, M., Mowry, E., Murta, J., Navas, C., Nolan, R., Nowomiejska, K., Oertel, F. C., Oh, J., Oreja-Guevara, C., Orssaud, C., Osborne, B., Outteryck, O., Paiva, C., Palace, J., Papadopoulou, A., Patsopoulos, N., Pontikos, N., Preising, M., Prince, J., Reich, D., Rejdak, R., Ringelstein, M., Rodriguez de Antonio, L., Sahel, J. -A., Sanchez-Dalmau, B., Sastre-Garriga, J., Schippling, S., Schuman, J., Shindler, K., Shin, R., Shuey, N., Soelberg, K., Specovius, S., Suppiej, A., Thompson, A., Toosy, A., Torres, R., Touitou, V., Trauzettel-Klosinski, S., van der Walt, A., Vermersch, P., Vidal-Jordana, A., Waldman, A. T., Waters, C., Wheeler, R., White, O., Wilhelm, H., Winges, K. M., Wiegerinck, N., Wiehe, L., Wisnewski, T., Wong, S., Wurfel, J., Yaghi, S., You, Y., Yu, Z., Yu-Wai-Man, P., Zemaitien≐, R., and Zimmermann, H.
- Subjects
0301 basic medicine ,Big Data ,medicine.medical_specialty ,Neurology ,media_common.quotation_subject ,Big data ,MEDLINE ,Reviews ,Socio-culturale ,Neurosciences. Biological psychiatry. Neuropsychiatry ,Review ,Public domain ,Retina ,Cohort Studies ,03 medical and health sciences ,Annotation ,0302 clinical medicine ,Artificial Intelligence ,medicine ,Humans ,Quality (business) ,RC346-429 ,Tomography ,media_common ,Image pattern recognition ,business.industry ,General Neuroscience ,Nervous System Diseases ,Tomography, Optical Coherence ,Algorithms ,030104 developmental biology ,Optical Coherence ,Imaging technology ,RC0321 ,Neurology. Diseases of the nervous system ,Neurology (clinical) ,Artificial intelligence ,sense organs ,business ,030217 neurology & neurosurgery ,RC321-571 - Abstract
Artificial intelligence (AI)‐based diagnostic algorithms have achieved ambitious aims through automated image pattern recognition. For neurological disorders, this includes neurodegeneration and inflammation. Scalable imaging technology for big data in neurology is optical coherence tomography (OCT). We highlight that OCT changes observed in the retina, as a window to the brain, are small, requiring rigorous quality control pipelines. There are existing tools for this purpose. Firstly, there are human‐led validated consensus quality control criteria (OSCAR‐IB) for OCT. Secondly, these criteria are embedded into OCT reporting guidelines (APOSTEL). The use of the described annotation of failed OCT scans advances machine learning. This is illustrated through the present review of the advantages and disadvantages of AI‐based applications to OCT data. The neurological conditions reviewed here for the use of big data include Alzheimer disease, stroke, multiple sclerosis (MS), Parkinson disease, and epilepsy. It is noted that while big data is relevant for AI, ownership is complex. For this reason, we also reached out to involve representatives from patient organizations and the public domain in addition to clinical and research centers. The evidence reviewed can be grouped in a five‐point expansion of the OSCAR‐IB criteria to embrace AI (OSCAR‐AI). The review concludes by specific recommendations on how this can be achieved practically and in compliance with existing guidelines.
- Published
- 2021
- Full Text
- View/download PDF
7. Asymmetric distribution of enlarged perivascular spaces in centrum semiovale may be associated with epilepsy after acute ischemic stroke
- Author
-
Yu, N, Sinclair, B, Posada, LMG, Chen, Z, Di, Q, Lin, X, Kolbe, S, Hlauschek, G, Kwan, P, Law, M, Yu, N, Sinclair, B, Posada, LMG, Chen, Z, Di, Q, Lin, X, Kolbe, S, Hlauschek, G, Kwan, P, and Law, M
- Abstract
OBJECTIVE: To investigate the factors influencing enlarged perivascular space (EPVS) characteristics at the onset of acute ischemic stroke (AIS), and whether the PVS characteristics can predict later post-stroke epilepsy (PSE). METHODS: A total of 312 patients with AIS were identified, of whom 58/312 (18.6%) developed PSE. Twenty healthy participants were included as the control group. The number of PVS in the basal ganglia (BG), centrum semiovale (CS), and midbrain (MB) was manually calculated on T2 -weighted MRI. The scores and asymmetry index (AI) of EPVS in each region were compared among the enrolled participants. Other potential risk factors for PSE were also analyzed, including NIHSS at admission and stroke etiologies. RESULTS: The EPVS scores were significantly higher in the bilateral BG and CS of AIS patients compared to those of the control group (both p < 0.01). No statistical differences in EPVS scores in BG, CS, and MB were obtained between the PSE group and the nonepilepsy AIS group (all p > 0.01). However, markedly different AI scores in CS were found between the PSE group and the nonepilepsy AIS group (p = 0.004). Multivariable analysis showed that high asymmetry index of EPVS (AI≥0.2) in CS was an independent predictor for PSE (OR = 3.7, 95% confidence interval 1.5-9.1, p = 0.004). CONCLUSIONS: Asymmetric distribution of EPVS in CS may be an independent risk factor and a novel imaging biomarker for the development of PSE. Further studies to understand the mechanisms of this association and confirmation with larger patient populations are warranted.
- Published
- 2022
8. Long-term structural brain changes in adult rats after mild ischaemic stroke
- Author
-
Syeda, W, Ermine, CM, Khilf, MS, Wright, D, Brait, VH, Nithianantharajah, J, Kolbe, S, Johnston, LA, Thompson, LH, Brodtmann, A, Syeda, W, Ermine, CM, Khilf, MS, Wright, D, Brait, VH, Nithianantharajah, J, Kolbe, S, Johnston, LA, Thompson, LH, and Brodtmann, A
- Abstract
Preclinical studies of remote degeneration have largely focused on brain changes over the first few days or weeks after stroke. Accumulating evidence suggests that neurodegeneration occurs in other brain regions remote to the site of infarction for months and even years following ischaemic stroke. Brain atrophy appears to be driven by both axonal degeneration and widespread brain inflammation. The evolution and duration of these changes are increasingly being described in human studies, using advanced brain imaging techniques. Here, we sought to investigate long-term structural brain changes in a model of mild focal ischaemic stroke following injection of endothlin-1 in adult Long-Evans rats (n = 14) compared with sham animals (n = 10), over a clinically relevant time-frame of 48 weeks. Serial structural and diffusion-weighted MRI data were used to assess dynamic volume and white matter trajectories. We observed dynamic regional brain volume changes over the 48 weeks, reflecting both normal changes with age in sham animals and neurodegeneration in regions connected to the infarct following ischaemia. Ipsilesional cortical volume loss peaked at 24 weeks but was less prominent at 36 and 48 weeks. We found significantly reduced fractional anisotropy in both ipsi- and contralesional motor cortex and cingulum bundle regions of infarcted rats (P < 0.05) from 4 to 36 weeks, suggesting ongoing white matter degeneration in tracts connected to but distant from the stroke. We conclude that there is evidence of significant cortical atrophy and white matter degeneration up to 48 weeks following infarct, consistent with enduring, pervasive stroke-related degeneration.
- Published
- 2022
9. The Energetic Particle Detector
- Author
-
Rodríguez-Pacheco, J., Wimmer-Schweingruber, R., Mason, G., Ho, G., Sánchez-Prieto, S., Prieto, M., Martín, C., Seifert, H., Andrews, G., Kulkarni, S., Panitzsch, L., Boden, S., Böttcher, S., Cernuda, I., Elftmann, R., Espinosa Lara, F., Gómez-Herrero, R., Terasa, C., Almena, J., Begley, S., Böhm, E., Blanco, J., Boogaerts, W., Carrasco, A., Castillo, R., da Silva Fariña, A., de Manuel González, V., Drews, C., Dupont, A., Eldrum, S., Gordillo, C., Gutiérrez, O., Haggerty, D., Hayes, J., Heber, B., Hill, M., Jüngling, M., Kerem, S., Knierim, V., Köhler, J., Kolbe, S., Kulemzin, A., Lario, D., Lees, W., Liang, S., Martínez Hellín, A., Meziat, D., Montalvo, A., Nelson, K., Parra, P., Paspirgilis, R., Ravanbakhsh, A., Richards, M., Rodríguez-Polo, O., Russu, A., Sánchez, I., Schlemm, C., Schuster, B., Seimetz, L., Steinhagen, J., Tammen, J., Tyagi, K., Varela, T., Yedla, M., Yu, J., Agueda, N., Aran, A., Horbury, T., Klecker, B., Klein, K.-L., Kontar, E., Krucker, S., Maksimovic, M., Malandraki, O., Owen, C., Pacheco, D., Sanahuja, B., Vainio, R., Connell, J., Dalla, S., Dröge, W., Gevin, O., Gopalswamy, N., Kartavykh, Y., Kudela, K., Limousin, O., Makela, P., Mann, G., Önel, H., Posner, A., Ryan, J., Soucek, J., Hofmeister, S., Vilmer, N., Walsh, A., Wang, L., Wiedenbeck, M., Wirth, K., Zong, Q., Universidad de Alcalá - University of Alcalá (UAH), Institut für Experimentelle und Angewandte Physik [Kiel] (IEAP), Christian-Albrechts-Universität zu Kiel (CAU), Johns Hopkins University Applied Physics Laboratory [Laurel, MD] (APL), Universidad de Tarapaca, Paul Scherrer Institute (PSI), Indian Institute of Technology Bombay (IIT Bombay), Laboratoire d'études spatiales et d'instrumentation en astrophysique (LESIA (UMR_8109)), Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire de Paris, and Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP)
- Subjects
[SDU]Sciences of the Universe [physics] ,Physics::Space Physics ,Astrophysics::Instrumentation and Methods for Astrophysics ,Astrophysics::Solar and Stellar Astrophysics ,Astrophysics::Earth and Planetary Astrophysics - Abstract
International audience; After decades of observations of solar energetic particles from space-based observatories, relevant questions on particle injection, transport, and acceleration remain open. To address these scientific topics, accurate measurements of the particle properties in the inner heliosphere are needed. In this paper we describe the Energetic Particle Detector (EPD), an instrument suite that is part of the scientific payload aboard the Solar Orbiter mission. Solar Orbiter will approach the Sun as close as 0.28 au and will provide extra-ecliptic measurements beyond ∼30° heliographic latitude during the later stages of the mission. The EPD will measure electrons, protons, and heavy ions with high temporal resolution over a wide energy range, from suprathermal energies up to several hundreds of megaelectronvolts/nucleons. For this purpose, EPD is composed of four units: the SupraThermal Electrons and Protons (STEP), the Electron Proton Telescope (EPT), the Suprathermal Ion Spectrograph (SIS), and the High-Energy Telescope (HET) plus the Instrument Control Unit that serves as power and data interface with the spacecraft. The low-energy population of electrons and ions will be covered by STEP and EPT, while the high-energy range will be measured by HET. Elemental and isotopic ion composition measurements will be performed by SIS and HET, allowing full particle identification from a few kiloelectronvolts up to several hundreds of megaelectronvolts/nucleons. Angular information will be provided by the separate look directions from different sensor heads, on the ecliptic plane along the Parker spiral magnetic field both forward and backwards, and out of the ecliptic plane observing both northern and southern hemispheres. The unparalleled observations of EPD will provide key insights into long-open and crucial questions about the processes that govern energetic particles in the inner heliosphere.
- Published
- 2020
- Full Text
- View/download PDF
10. Fixel-based Analysis of Diffusion MRI: Methods, Applications, Challenges and Opportunities.
- Author
-
Dhollander T., Clemente A., Singh M., Boonstra F., Civier O., Duque J.D., Egorova N., Enticott P., Fuelscher I., Gajamange S., Genc S., Gottlieb E., Hyde C., Imms P., Kelly C., Kirkovski M., Kolbe S., Liang X., Malhotra A., Mito R., Poudel G., Silk T.J., Vaughan D.N., Zanin J., Raffelt D., Caeyenberghs K., Dhollander T., Clemente A., Singh M., Boonstra F., Civier O., Duque J.D., Egorova N., Enticott P., Fuelscher I., Gajamange S., Genc S., Gottlieb E., Hyde C., Imms P., Kelly C., Kirkovski M., Kolbe S., Liang X., Malhotra A., Mito R., Poudel G., Silk T.J., Vaughan D.N., Zanin J., Raffelt D., and Caeyenberghs K.
- Abstract
Diffusion MRI has provided the neuroimaging community with a powerful tool to acquire in-vivo data sensitive to microstructural features of white matter, up to 3 orders of magnitude smaller than typical voxel sizes. The key to extracting such valuable information lies in complex modelling techniques, which form the link between the rich diffusion MRI data and various metrics related to the microstructural organization. Over time, increasingly advanced techniques have been developed, up to the point where some diffusion MRI models can now provide access to properties specific to individual fibre populations in each voxel in the presence of multiple "crossing" fibre pathways. While highly valuable, such fibre-specific information poses unique challenges for typical image processing pipelines and statistical analysis. In this work, we review the "Fixel-Based Analysis" (FBA) framework, which implements bespoke solutions to this end. It has recently seen a stark increase in adoption for studies of both typical (healthy) populations as well as a wide range of clinical populations. We describe the main concepts related to Fixel-Based Analyses, as well as the methods and specific steps involved in a state-of-the-art FBA pipeline, with a focus on providing researchers with practical advice on how to interpret results. We also include an overview of the scope of all current FBA studies, categorized across a broad range of neuro-scientific domains, listing key design choices and summarizing their main results and conclusions. Finally, we critically discuss several aspects and challenges involved with the FBA framework, and outline some directions and future opportunities.Copyright © 2021
- Published
- 2021
11. Fixel-based Analysis of Diffusion MRI: Methods, Applications, Challenges and Opportunities
- Author
-
Dhollander, T, Clemente, A, Singh, M, Boonstra, F, Civier, O, Duque, JD, Egorova, N, Enticott, Peter, Fuelscher, Ian, Gajamange, S, Genc, S, Gottlieb, E, Hyde, Christian, Imms, P, Kelly, C, Kirkovski, Melissa, Kolbe, S, Liang, X, Malhotra, A, Mito, R, Poudel, G, Silk, Timothy, Vaughan, DN, Zanin, J, Raffelt, D, Caeyenberghs, Karen, Dhollander, T, Clemente, A, Singh, M, Boonstra, F, Civier, O, Duque, JD, Egorova, N, Enticott, Peter, Fuelscher, Ian, Gajamange, S, Genc, S, Gottlieb, E, Hyde, Christian, Imms, P, Kelly, C, Kirkovski, Melissa, Kolbe, S, Liang, X, Malhotra, A, Mito, R, Poudel, G, Silk, Timothy, Vaughan, DN, Zanin, J, Raffelt, D, and Caeyenberghs, Karen
- Published
- 2021
12. APOSTEL 2.0 Recommendations for Reporting Quantitative Optical Coherence Tomography Studies
- Author
-
Aytulun, A, Cruz-Herranz, A, Aktas, O, Balcer, LJ, Balk, L, Barboni, P, Blanco, AA, Calabresi, PA, Costello, F, Sanchez-Dalmau, B, DeBuc, DC, Feltgen, N, Finger, RP, Frederiksen, JL, Frohman, E, Frohman, T, Garway-Heath, D, Gabilondo, I, Graves, JS, Green, AJ, Hartung, H-P, Havla, J, Holz, FG, Imitola, J, Kenney, R, Klistorner, A, Knier, B, Korn, T, Kolbe, S, Kraemer, J, Lagreze, WA, Leocani, L, Maier, O, Martinez-Lapiscina, EH, Meuth, S, Outteryck, O, Paul, F, Petzold, A, Pihl-Jensen, G, Preiningerova, JL, Rebolleda, G, Ringelstein, M, Saidha, S, Schippling, S, Schuman, JS, Sergott, RC, Toosy, A, Villoslada, P, Wolf, S, Yeh, EA, Yu-Wai-Man, P, Zimmermann, HG, Brandt, AU, Albrecht, P, Aytulun, A, Cruz-Herranz, A, Aktas, O, Balcer, LJ, Balk, L, Barboni, P, Blanco, AA, Calabresi, PA, Costello, F, Sanchez-Dalmau, B, DeBuc, DC, Feltgen, N, Finger, RP, Frederiksen, JL, Frohman, E, Frohman, T, Garway-Heath, D, Gabilondo, I, Graves, JS, Green, AJ, Hartung, H-P, Havla, J, Holz, FG, Imitola, J, Kenney, R, Klistorner, A, Knier, B, Korn, T, Kolbe, S, Kraemer, J, Lagreze, WA, Leocani, L, Maier, O, Martinez-Lapiscina, EH, Meuth, S, Outteryck, O, Paul, F, Petzold, A, Pihl-Jensen, G, Preiningerova, JL, Rebolleda, G, Ringelstein, M, Saidha, S, Schippling, S, Schuman, JS, Sergott, RC, Toosy, A, Villoslada, P, Wolf, S, Yeh, EA, Yu-Wai-Man, P, Zimmermann, HG, Brandt, AU, and Albrecht, P
- Abstract
OBJECTIVE: To update the consensus recommendations for reporting of quantitative optical coherence tomography (OCT) study results, thus revising the previously published Advised Protocol for OCT Study Terminology and Elements (APOSTEL) recommendations. METHODS: To identify studies reporting quantitative OCT results, we performed a PubMed search for the terms "quantitative" and "optical coherence tomography" from 2015 to 2017. Corresponding authors of the identified publications were invited to provide feedback on the initial APOSTEL recommendations via online surveys following the principle of a modified Delphi method. The results were evaluated and discussed by a panel of experts and changes to the initial recommendations were proposed. A final survey was recirculated among the corresponding authors to obtain a majority vote on the proposed changes. RESULTS: A total of 116 authors participated in the surveys, resulting in 15 suggestions, of which 12 were finally accepted and incorporated into an updated 9-point checklist. We harmonized the nomenclature of the outer retinal layers, added the exact area of measurement to the description of volume scans, and suggested reporting device-specific features. We advised to address potential bias in manual segmentation or manual correction of segmentation errors. References to specific reporting guidelines and room light conditions were removed. The participants' consensus with the recommendations increased from 80% for the previous APOSTEL version to greater than 90%. CONCLUSIONS: The modified Delphi method resulted in an expert-led guideline (evidence Class III; Grading of Recommendations, Assessment, Development and Evaluations [GRADE] criteria) concerning study protocol, acquisition device, acquisition settings, scanning protocol, funduscopic imaging, postacquisition data selection, postacquisition analysis, nomenclature and abbreviations, and statistical approach. It will be essential to update these recommendations to
- Published
- 2021
13. QSMART: Quantitative susceptibility mapping artifact reduction technique
- Author
-
Yaghmaie, N, Syeda, WT, Wu, C, Zhang, Y, Zhang, TD, Burrows, EL, Brodtmann, A, Moffat, BA, Wright, DK, Glarin, R, Kolbe, S, Johnston, LA, Yaghmaie, N, Syeda, WT, Wu, C, Zhang, Y, Zhang, TD, Burrows, EL, Brodtmann, A, Moffat, BA, Wright, DK, Glarin, R, Kolbe, S, and Johnston, LA
- Abstract
PURPOSE: Quantitative susceptibility mapping (QSM) is a novel MR technique that allows mapping of tissue susceptibility values from MR phase images. QSM is an ill-conditioned inverse problem, and although several methods have been proposed in the field, in the presence of a wide range of susceptibility sources, streaking artifacts appear around high susceptibility regions and contaminate the whole QSM map. QSMART is a post-processing pipeline that uses two-stage parallel inversion to reduce the streaking artifacts and remove banding artifact at the cortical surface and around the vasculature. METHOD: Tissue and vein susceptibility values were separately estimated by generating a mask of vasculature driven from the magnitude data using a Frangi filter. Spatially dependent filtering was used for the background field removal step and the two susceptibility estimates were combined in the final QSM map. QSMART was compared to RESHARP/iLSQR and V-SHARP/iLSQR inversion in a numerical phantom, 7T in vivo single and multiple-orientation scans, 9.4T ex vivo mouse data, and 4.7T in vivo rat brain with induced focal ischemia. RESULTS: Spatially dependent filtering showed better suppression of phase artifacts near cortex compared to RESHARP and V-SHARP, while preserving voxels located within regions of interest without brain edge erosion. QSMART showed successful reduction of streaking artifacts as well as improved contrast between different brain tissues compared to the QSM maps obtained by RESHARP/iLSQR and V-SHARP/iLSQR. CONCLUSION: QSMART can reduce QSM artifacts to enable more robust estimation of susceptibility values in vivo and ex vivo.
- Published
- 2021
14. Sodium selenate as a disease-modifying treatment for progressive supranuclear palsy: protocol for a phase 2, randomised, double-blind, placebo-controlled trial
- Author
-
Vivash, L, Bertram, KL, Malpas, CB, Marotta, C, Harding, IH, Kolbe, S, Fielding, J, Clough, M, Lewis, SJG, Tisch, S, Evans, AH, O'Sullivan, JD, Kimber, T, Darby, D, Churilov, L, Law, M, Hovens, CM, Velakoulis, D, O'Brien, TJ, Vivash, L, Bertram, KL, Malpas, CB, Marotta, C, Harding, IH, Kolbe, S, Fielding, J, Clough, M, Lewis, SJG, Tisch, S, Evans, AH, O'Sullivan, JD, Kimber, T, Darby, D, Churilov, L, Law, M, Hovens, CM, Velakoulis, D, and O'Brien, TJ
- Abstract
INTRODUCTION: Progressive supranuclear palsy (PSP) is a neurodegenerative disorder for which there are currently no disease-modifying therapies. The neuropathology of PSP is associated with the accumulation of hyperphosphorylated tau in the brain. We have previously shown that protein phosphatase 2 activity in the brain is upregulated by sodium selenate, which enhances dephosphorylation. Therefore, the objective of this study is to evaluate the efficacy and safety of sodium selenate as a disease-modifying therapy for PSP. METHODS AND ANALYSIS: This will be a multi-site, phase 2b, double-blind, placebo-controlled trial of sodium selenate. 70 patients will be recruited at six Australian academic hospitals and research institutes. Following the confirmation of eligibility at screening, participants will be randomised (1:1) to receive 52 weeks of active treatment (sodium selenate; 15 mg three times a day) or matching placebo. Regular safety and efficacy visits will be completed throughout the study period. The primary study outcome is change in an MRI volume composite (frontal lobe+midbrain-3rd ventricle) over the treatment period. Analysis will be with a general linear model (GLM) with the MRI composite at 52 weeks as the dependent variable, treatment group as an independent variable and baseline MRI composite as a covariate. Secondary outcomes are change in PSP rating scale, clinical global impression of change (clinician) and change in midbrain mean diffusivity. These outcomes will also be analysed with a GLM as above, with the corresponding baseline measure entered as a covariate. Secondary safety and tolerability outcomes are frequency of serious adverse events, frequency of down-titration occurrences and frequency of study discontinuation. Additional, as yet unplanned, exploratory outcomes will include analyses of other imaging, cognitive and biospecimen measures. ETHICS AND DISSEMINATION: The study was approved by the Alfred Health Ethics Committee (594/20). Each
- Published
- 2021
15. Speech metrics, general disability, brain imaging and quality of life in multiple sclerosis
- Author
-
Noffs, G., primary, Boonstra, F. M. C., additional, Perera, T., additional, Butzkueven, H., additional, Kolbe, S. C., additional, Maldonado, F., additional, Cofre Lizama, L. Euardo, additional, Galea, M. P., additional, Stankovich, J., additional, Evans, A., additional, Walt, A., additional, and Vogel, A. P., additional
- Published
- 2020
- Full Text
- View/download PDF
16. Evaluation of cerebellar function scores in relation to cerebellar axonal loss in multiple sclerosis
- Author
-
Boonstra, F., primary, Gajamange, S., additional, Noffs, G., additional, Perera, T., additional, Strik, M., additional, Vogel, A., additional, Butzkueven, H., additional, Evans, A., additional, van der Walt, A., additional, and Kolbe, S., additional
- Published
- 2020
- Full Text
- View/download PDF
17. Lesion Volume in Relapsing Multiple Sclerosis is Associated with Perivascular Space Enlargement at the Level of the Basal Ganglia.
- Author
-
Kolbe, S. C., Garcia, L. M., Yu, N., Boonstra, F. M., Clough, M., Sinclair, B., White, O., van der Walt, A., Butzkueven, H., Fielding, J., and Law, M.
- Published
- 2022
- Full Text
- View/download PDF
18. Speech biometrics can predict cerebellar dysfunction in multiple sclerosis
- Author
-
Vogel, A, Noffs, G, Boonstra, F, Perera, T, Kolbe, S, Stankovich, J, Butzkueven, H, Evans, A, Walt, AD, Vogel, A, Noffs, G, Boonstra, F, Perera, T, Kolbe, S, Stankovich, J, Butzkueven, H, Evans, A, and Walt, AD
- Abstract
Objective: To objectively describe cerebellar mediated speech function using a multiparameter index that reflects pathology and quality of life in MS. Background: Cerebellar function plays a role in cognitive processing and motor control and is important for speech production. Multiple sclerosis (MS) can result in impaired cerebellar function, leading to speech deficits. These deficits can be detected by instrumental measurement. Speech as a marker of cerebellar impairment but is not well described. Method: The speech and clinical features of 85 people with MS (plus 21 matched controls) were assessed using objective acoustic analysis, validated questionnaires of quality of life and disease severity using the Scale for the Assessment and rating of Ataxia. Magnetic resonance imaging was used to measure cerebellar pathology. A regression model with eight speech variables were used to predict cerebellar function. A composite speech score was developed from the model and tested for prediction of fine motor function using the 9-hole peg test (9HPT), for correlations with imaging outcomes and self-assessed quality of life. Results: Speech timing metrics (eg. slow rate of syllable repetition, increased proportion of silence) were the strongest predictors of cerebellar impairment, alongside phonatory instability. The acoustic composite score accounted for 54% of variation in cerebellar dysfunction, was associated with cerebellar white matter volume (r=0.3, p=0.017), quality of life (r=0.5, p<0.001) and predicted an abnormal 9HPT with 85% accuracy. Conclusion: Motor cerebellar impairment in MS was reflected in an objective multi-feature speech metric.
- Published
- 2020
19. 924 - Process Development and Manufacturing: ENHANCEMENT OF BIOACTIVE AND CELL-LABELING PEPTIDES WITH DNA-TEMPLATED MULTIVALENCE
- Author
-
Möser, C., Freitag, J., Kolbe, S., and Smith, D.M.
- Published
- 2022
- Full Text
- View/download PDF
20. Increased functional efficiency of the sensorimotor network is associated with disability in multiple sclerosis
- Author
-
Strik, M., Chard, D. T., Dekker, I., Pardini, M., Meijer, K. A., Eijlers, A. J. C., Uitdehaag, B. M. J., Kolbe, S. C., Geurts, J. J. G., Schoonheim, M. M., Anatomy and neurosciences, Radiology and nuclear medicine, Amsterdam Neuroscience - Neuroinfection & -inflammation, Neurology, CCA - Imaging and biomarkers, Amsterdam Neuroscience - Neurodegeneration, and Amsterdam Neuroscience - Brain Imaging
- Published
- 2018
21. A continuum of T2* components: Flexible fast fraction mapping in sodium MRI
- Author
-
Syeda, W, Blunck, Y, Kolbe, S, Cleary, JO, Johnston, LA, Syeda, W, Blunck, Y, Kolbe, S, Cleary, JO, and Johnston, LA
- Abstract
PURPOSE: Parameter mapping in sodium MRI data is challenging due to inherently low SNR and spatial resolution, prompting the need to employ robust models and estimation techniques. This work aims to develop a continuum model of sodium T2* -decay to overcome the limitations of the commonly employed bi-exponential models. Estimates of mean T2* -decay and fast component fraction in tissue are emergent from the inferred continuum model. METHODS: A closed-form continuum model was derived assuming a gamma distribution of T2* components. Sodium MRI was performed on four healthy human subjects and a phantom consisting of closely packed vials filled with an aqueous solution of varying sodium and agarose concentrations. The continuum model was applied to the phantom and in vivo human multi-echo 7T data. Parameter maps by voxelwise model-fitting were obtained. RESULTS: The continuum model demonstrated comparable estimation performance to the bi-exponential model. The parameter maps provided improved contrast between tissue structures. The fast component fraction, an indicator of the heterogeneity of localised sodium motion regimes in tissue, was zero in CSF and high in WM structures. CONCLUSIONS: The continuum distribution model provides high quality, high contrast parameter maps, and informative voxelwise estimates of the relative weighting between fast and slow decay components.
- Published
- 2019
22. Functional correlates of cognitive dysfunction in clinically isolated syndromes
- Author
-
Paul, F, Gajamange, S, Shelton, A, Clough, M, White, O, Fielding, J, Kolbe, S, Paul, F, Gajamange, S, Shelton, A, Clough, M, White, O, Fielding, J, and Kolbe, S
- Abstract
Cognitive dysfunction can be identified in patients with clinically isolated syndromes suggestive of multiple sclerosis using ocular motor testing. This study aimed to identify the functional neural correlates of cognitive dysfunction in patients with clinically isolated syndrome using MRI. Eighteen patients with clinically isolated syndrome and 17 healthy controls were recruited. Subjects underwent standard neurological and neuropsychological testing. Subjects also underwent functional MRI (fMRI) during a cognitive ocular motor task, involving pro-saccade (direct gaze towards target) and anti-saccade (direct gaze away from target) trials. Ocular motor performance variables (averaged response time and error rate) were calculated for each subject. Patients showed a trend towards a greater rate of anti-saccade errors (p = 0.09) compared to controls. Compared to controls, patients exhibited increased activation in the right postcentral, right supramarginal gyrus, and the right parietal operculum during the anti-saccade>pro-saccade contrast. This study demonstrated that changes in functional organisation of cognitive brain networks is associated with subtle cognitive changes in patients with clinically isolated syndrome.
- Published
- 2019
23. Speech metrics, general disability, brain imaging and quality of life in multiple sclerosis.
- Author
-
Noffs, G., Boonstra, F. M. C., Perera, T., Butzkueven, H., Kolbe, S. C., Maldonado, F., Cofre Lizama, L. Euardo, Galea, M. P., Stankovich, J., Evans, A., Walt, A., and Vogel, A. P.
- Subjects
MULTIPLE sclerosis ,BRAIN imaging ,WHITE matter (Nerve tissue) ,QUALITY of life ,DISABILITIES ,HEARING impaired ,SPEECH apraxia ,VELOPHARYNGEAL insufficiency - Abstract
Background and purpose: Objective measurement of speech has shown promising results to monitor disease state in multiple sclerosis. In this study, we characterize the relationship between disease severity and speech metrics through perceptual (listener based) and objective acoustic analysis. We further look at deviations of acoustic metrics in people with no perceivable dysarthria. Methods: Correlations and regression were calculated between speech measurements and disability scores, brain volume, lesion load and quality of life. Speech measurements were further compared between three subgroups of increasing overall neurological disability: mild (as rated by the Expanded Disability Status Scale ≤2.5), moderate (≥3 and ≤5.5) and severe (≥6). Results: Clinical speech impairment occurred majorly in people with severe disability. An experimental acoustic composite score differentiated mild from moderate (P < 0.001) and moderate from severe subgroups (P = 0.003), and correlated with overall neurological disability (r = 0.6, P < 0.001), quality of life (r = 0.5, P < 0.001), white matter volume (r = 0.3, P = 0.007) and lesion load (r = 0.3, P = 0.008). Acoustic metrics also correlated with disability scores in people with no perceivable dysarthria. Conclusions: Acoustic analysis offers a valuable insight into the development of speech impairment in multiple sclerosis. These results highlight the potential of automated analysis of speech to assist in monitoring disease progression and treatment response. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
24. Crystal structure of the human Bub1 kinase domain in complex with BAY 1816032
- Author
-
Holton, S.J., primary, Siemeister, G., additional, Mengel, A., additional, Bone, W., additional, Schroeder, J., additional, Zitzmann-Kolbe, S., additional, Briem, H., additional, Fernandez-Montalvan, A., additional, Prechtl, S., additional, Moenning, U., additional, von Ahsen, O., additional, Johanssen, J., additional, Cleve, A., additional, Puetter, V., additional, Hitchcock, M., additional, von Nussbaum, F., additional, Brands, M., additional, Mumberg, D., additional, and Ziegelbauer, K., additional
- Published
- 2018
- Full Text
- View/download PDF
25. Fibre-specific white matter changes in multiple sclerosis patients with optic neuritis
- Author
-
Gajamange, S, Raffelt, D, Dhollander, T, Lui, E, van der Walt, A, Kilpatrick, T, Fielding, J, Connelly, A, Kolbe, S, Gajamange, S, Raffelt, D, Dhollander, T, Lui, E, van der Walt, A, Kilpatrick, T, Fielding, J, Connelly, A, and Kolbe, S
- Abstract
Long term irreversible disability in multiple sclerosis (MS) is thought to be primarily driven by axonal degeneration. Axonal degeneration leads to degenerative atrophy, therefore early markers of axonal degeneration are required to predict clinical disability and treatment efficacy. Given that additional pathologies such as inflammation, demyelination and oedema are also present in MS, it is essential to develop axonal markers that are not confounded by these processes. The present study investigated a novel method for measuring axonal degeneration in MS based on high angular resolution diffusion magnetic resonance imaging. Unlike standard methods, this novel method involved advanced acquisition and modelling for improved axonal sensitivity and specificity. Recent work has developed analytical methods, two novel axonal markers, fibre density and cross-section, that can be estimated for each fibre direction in each voxel (termed a "fixel"). This technique, termed fixel-based analysis, thus simultaneously estimates axonal density and white matter atrophy from specific white matter tracts. Diffusion-weighted imaging datasets were acquired for 17 patients with a history of acute unilateral optic neuritis (35.3 ± 10.2 years, 11 females) and 14 healthy controls (32.7 ± 4.8 years, 8 females) on a 3 T scanner. Fibre density values were compared to standard diffusion tensor imaging parameters (fractional anisotropy and mean diffusivity) in lesions and normal appearing white matter. Group comparisons were performed for each fixel to assess putative differences in fibre density and fibre cross-section. Fibre density was observed to have a comparable sensitivity to fractional anisotropy for detecting white matter pathology in MS, but was not affected by crossing axonal fibres. Whole brain fixel-based analysis revealed significant reductions in fibre density and fibre cross-section in the inferior fronto-occipital fasciculus (including the optic radiations) of patients compared
- Published
- 2018
26. A comparison of human and digital speech analysis to describe and monitor cerebellar dysfunction and disease severity in multiple sclerosis.
- Author
-
Noffs, G, Boonstra, F, Maldonado, F, Perera, T, Kolbe, S, Evans, A, Butzkeuven, H, Vogel, A, van der Walt, A, Noffs, G, Boonstra, F, Maldonado, F, Perera, T, Kolbe, S, Evans, A, Butzkeuven, H, Vogel, A, and van der Walt, A
- Published
- 2018
27. Novel adaptation of the spectral kurtosis for vibration diagnosis of gearboxes in non-stationary conditions
- Author
-
Gelman, L, primary, Kolbe, S, additional, Shaw, B, additional, and Vaidhianathasamy, M, additional
- Published
- 2017
- Full Text
- View/download PDF
28. MOLECULAR MECHANISMS AND COMBINATION STRATEGIES WITH PI3K AND BTK INHIBITORS TO OVERCOME INTRINSIC AND ACQUIRED RESISTANCE IN PRECLINICAL MODELS OF ABC-DLBCL
- Author
-
Paul, J., primary, Soujon, M., additional, Wengner, A.M., additional, Zitzmann-Kolbe, S., additional, Sturz, A., additional, Haike, K., additional, Koh, H.M., additional, Tan, S., additional, Lange, M., additional, Mumberg, D., additional, Lim, S., additional, Ziegelbauer, K., additional, and Liu, N., additional
- Published
- 2017
- Full Text
- View/download PDF
29. Objective speech marker correlates with clinical scores in non-dysarthric MS
- Author
-
Noffs, G, Boonstra, F, Kolbe, S, Perera, T, Shanahan, C, Evans, A, Butzkueven, H, Vogel, A, Van der Walt, A, Noffs, G, Boonstra, F, Kolbe, S, Perera, T, Shanahan, C, Evans, A, Butzkueven, H, Vogel, A, and Van der Walt, A
- Abstract
Background: Reduction of brain volume occurs in clinically active disease and correlates with progressive disability in multiple Sclerosis (MS). Although dysarthria is highly prevalent in MS, it only becomes clinically relevant in advanced stages of the disease. The relationship between early sub-clinical markers of dysarthria and overall disease severity is poorly understood. Aim: To examine the relationship between an objective marker of speech performance and validated clinical scores for disease severity in non-dysarthric subjects with relapsing-remitting and secondary progressive MS. Method: An experienced neurologist scored patients according to the Expanded Disability Status Scale (EDSS) and the Scale for the Assessment and Rating of Ataxia (SARA). Acoustic analysis was used to investigate the diadochokinetic speed in “as fast as possible” repetition of the meaningless word /pa/ta/ka/. Brain images were acquired using 3 Tesla magnetic resonance. Images were automatically segmented using FreeSurfer (5.7) to determine volumes for whole brain (excluding ventricules) and cerebellum. Lesions were automatically segmented by the lesion prediction algorithm as implemented in the Lesion Segmentation Tool version 2.0.15 for SPM (Statistical Parametric Mapping software). Statistical correlations were processed in SPSS (v 23.0) controlling for age. After adjustment for multiple comparisons, a p< 0.01 was considered for statistical significance. Results: We assessed 35 MS patients with normal speech (i.e. SARA speech sub-score 0-1; age=47.7±12years; disease duration=13.2±8.4). Diadochokinetic rate (mean=5.63±0.83 syllables per second) directly correlated with EDSS (Spearman's rho=0.454, 2-tailed p=0.007; median EDSS=3.5, interquartile range=3.5) and SARA (rho=0.515, p=0.002; SARA median=9, interquartile range 11.975), but not with whole brain volume (p=0.022), lesion load (p=0.032) or cerebellar volume (p=0.037). Conclusion: Changes in acoustic markers can be detected bef
- Published
- 2017
30. Subclinical speech signs correlate with MS disease severity and differentiates patients with and without clinical cerebellar dysfunction
- Author
-
Noffs, G, Boonstra, F, Perera, T, Kolbe, S, Shanahan, C, Evans, A, Butzkueven, H, Vogel, A, van der Walt, A, Noffs, G, Boonstra, F, Perera, T, Kolbe, S, Shanahan, C, Evans, A, Butzkueven, H, Vogel, A, and van der Walt, A
- Abstract
Background: Dysarthria is highly prevalent in Multiple Sclerosis (MS). The relationship between dysarthria, MS disease severity and other cerebellar manifestations (such as tremor) is poorly understood. Aim: To examine the relationship between objective markers of speech, disease severity and upper limb tremor in relapsing-remitting and secondary progressive MS. Method: An experienced neurologist determined A) the presence of upper limb tremor, B) the Expanded Disability Status Scale (EDSS) score and C) the degree of dysarthria (from 0, no disturbance to 4, unintelligible). We used acoustic analysis to investigate 4 speech domains: 1) stability of vocal pitch, in sustained utterance of the vowel /a/; 2) stability of loudness, in the same sustained vowel; 3) diadochokinetic speed, in fast repetition of the meaningless word /pa/ta/ka/ and 4) maximum speed of vocal tract movement (i.e. change in pharynx and mouth cavity shape), measured through change in the second formant frequency in the word “always”, from reading of the “Grandfather Passage”. After adjustment for multiple comparisons, a p< 0.0125 was considered for statistical significance. Results: We assessed 24 MS patients with upper limb tremor (47.2±12.3years, 75% female, EDSS=3.7±1.6) and 24 matched patients without tremor (51.2±10.7years, 75% female, EDSS=3.6±1.7). Clinical dysarthria (median=0, mean=0.375±0.76) moderately correlated with EDSS scores (Spearman's rho =.586, p< .001) and with syllable repetition rates (/pa/ta/ka/ rho=.561, p< .001), marginally correlated with speed of tract movement (rho=.363, p=.012), pitch stability (rho=.37, p=.011), loudness stability (rho=.37, p=.01) but not with upper limb tremor presence (p=.039). Only /pa/ta/ka/ rate correlated with EDSS (rho=.529, p< .001) and speed of tract movement differentiated tremor and non-tremor groups (2-tailed t-test p=0.002, rho=.418). Conclusion: Acoustic speech measurements correlate with MS disease severity and can differentiate overt ce
- Published
- 2017
31. Pathophysiology of MS tremor: an fMRI study
- Author
-
Boonstra, F, Noffs, G, Perera, T, Shanahan, C, Vogel, A, Evans, A, Butzkueven, H, van der Walt, A, Kolbe, S, Boonstra, F, Noffs, G, Perera, T, Shanahan, C, Vogel, A, Evans, A, Butzkueven, H, van der Walt, A, and Kolbe, S
- Published
- 2017
32. Social Isolation Alters Social and Mating Behavior in the R451C Neuroligin Mouse Model of Autism
- Author
-
Burrows, E. L., primary, Eastwood, A. F., additional, May, C., additional, Kolbe, S. C., additional, Hill, T., additional, McLachlan, N. M., additional, Churilov, L., additional, and Hannan, A. J., additional
- Published
- 2017
- Full Text
- View/download PDF
33. Brain structure and intragenic DNA methylation are correlated, and predict executive dysfunction in fragile X premutation females
- Author
-
Shelton, AL, Cornish, KM, Kolbe, S, Clough, M, Slater, HR, Li, X, Kraan, CM, Bui, QM, Godler, DE, Fielding, J, Shelton, AL, Cornish, KM, Kolbe, S, Clough, M, Slater, HR, Li, X, Kraan, CM, Bui, QM, Godler, DE, and Fielding, J
- Abstract
DNA methylation of the Fragile X mental retardation 1 (FMR1) exon 1/intron 1 boundary has been associated with executive dysfunction in female carriers of a FMR1 premutation (PM: 55-199 CGG repeats), whereas neuroanatomical changes have been associated with executive dysfunction in PM males. To our knowledge, this study for the first time examined the inter-relationships between executive function, neuroanatomical structure and molecular measures (DNA methylation and FMR1 mRNA levels in blood) in PM and control (<44 CGG repeats) females. In the PM group, FMR1 intron 1 methylation was positively associated with executive function and cortical thickness in middle and superior frontal gyri, and left inferior parietal gyrus. By contrast, in the control group, FMR1 intron 1 methylation was negatively associated with cortical thickness of the left middle frontal gyrus and superior frontal gyri. No significant associations were revealed for either group between FMR1 mRNA and neuroanatomical structure or executive function. In the PM group, the lack of any significant association between FMR1 mRNA levels and phenotypic measures found in this study suggests that either FMR1 expression is not well conserved between tissues, or that FMR1 intron 1 methylation is linked to neuroanatomical and cognitive phenotype in PM females via a different mechanism.
- Published
- 2016
34. Brain structure and intragenic DNA methylation are correlated, and predict executive dysfunction in fragile X premutation females
- Author
-
Shelton, A L, primary, Cornish, K M, additional, Kolbe, S, additional, Clough, M, additional, Slater, H R, additional, Li, X, additional, Kraan, C M, additional, Bui, Q M, additional, Godler, D E, additional, and Fielding, J, additional
- Published
- 2016
- Full Text
- View/download PDF
35. Investigations into the synthesis, radiofluorination and conjugation of a new [18F]fluorocyclobutyl prosthetic group and its in vitro stability using a tyrosine model system
- Author
-
Franck, D., Kniess, T., Steinbach, J., Zitzmann-Kolbe, S., Friebe, M., Dinkelborg, L. M., and Graham, K.
- Subjects
Metabolism ,Positron emission tomography (PET) ,Cyclobutyl ,Stability ,Fluorine-18 - Abstract
The [18F]fluorocyclobutyl group has the potential to be a metabolically stable prosthetic group for PET tracers. The synthesis of the radiolabeling precursor cis-cyclobutane-1,3-diyl bis(toluene-4-sulfonate) 8 was obtained from epibromohydrin in 7 steps (2% overall yield). The radiolabeling of this precursor 8 and its conjugation to L-tyrosine as a model system was successfully achieved to give the new nonnatural amino acid 3-[18F]fluorocyclobutyl-L-tyrosine (L-3-[18F]FCBT) [18F]17 in 8% decay-corrected yield from the non-carrier-added [18F]fluoride. L-3-[18F]FCBT was investigated in vitro in different cancer cell lines to determine the uptake and stability. The tracer [18F]17 showed a time dependent uptake into different tumor cell lines (A549, NCI-H460, DU145) with the best uptake of 5.8% injected dose per 5 105 cells after 30 min in human lung carcinoma cells A549. The stability of L-3-[18F]FCBT in human and rat plasma and the stability of the non-radioactive L-3-FCBT in rat hepatocytes were both found to be excellent. These results show that the non-natural amino acid L-3-[18F]FCBT is a promising metabolically stable radiotracer for positron emission tomography.
- Published
- 2013
36. Fluorinated cyclobutyl group for increased metabolic stability using a tyrosine model system
- Author
-
Franck, D., Kniess, T., Steinbach, J., Zitzmann-Kolbe, S., Friebe, M., Dinkelborg, L., and Graham, K.
- Abstract
Objectives: [18F]Fluoroalkyl chains are known to be potential sites for metabolic instability and can result in suboptimal PET image quality [1]. The aim of this work was to develop the [18F]fluorocyclobutyl substituent as a novel 18F-labeled prosthetic group that should have an increased metabolic stability whilst maintaining its efficacy. The well-characterized tyrosine LAT transporter system was used as a model test system. Methods: The precursors (cis-cyclobutane-1,3-diol ditosylate and tert-butyl N-(tert-butoxycarbonyl)-O-[trans-3-(tosyloxy)cyclobutyl]-L-tyrosinate) and the reference compound, 3-(cis-fluorocyclobutyl)-tyrosine, for the indirect and direct radiosyntheses of 3-(cis-[18F]fluorocyclobutyl)tyrosine (3-[18F]FCBT) were synthesized. The radiosynthesis of the 3-[18F]FCBT via indirect and direct methods were successfully established as outlined in Scheme 1. In vitro studies were performed in A549 cells after incubation with 3-[18F]FCBT at 37°C for up to 60 min with/without inhibitors FET and non-radioactive 3-FCBT. In vivo PET imaging studies were performed on mice bearing human lung cancer xenografts (A549 carcinoma). Results: 3-[18F]FCBT was synthesized via the direct method from precursor 3 in good yield (27-37% d.c.) and excellent radiochemical purity (>99%) in 57-73 minutes. In comparison, the indirect method from the precursor 1 and tyrosine gave only moderate yields (6-12% d.c.) and required longer synthesis times (140-158 minutes). The cell uptake studies showed an increase of 3-[18F]FCBT over time reaching a plateau of 5.87% at 30 min . In animal PET imaging the A549 lung carcinoma xenografts in mice were clearly visualized by the injection of 6 MBq 3-[18F]FCBT. The compound showed fast clearance from the blood and renal as well as hepatobiliary excretion. Preliminary in vitro stability investigations using 3-FCBT indicate excellent stability. Conclusions: The radiosynthesis of 3-[18F]FCBT via indirect and direct methods were established The introduction of fluorinated cyclobutyl group into the LAT-targeting tyrosine was shown to be tolerated and actively transported in the in vitro and in vivo setting using A549 cells and their xenografts. The principle of this fluorinated cyclobutyl group as stabilizing moiety will be further investigated. References: [1] Treble, (1962) Biochemistry, 82, 129-134
- Published
- 2011
37. Investigating fluorinated cycloalkyl groups for increased metabolic stability using a Tyrosine model system
- Author
-
Franck, D., Kniess, T., Steinbach, J., Zitzmann-Kolbe, S., Friebe, M., Dinkelborg, L. M., and Graham, K.
- Abstract
Objectives: The aim was to investigate whether fluorocyclobutyl rings can be introduced into targeting probes to improve metabolic stability, while maintaining its binding affinity, using tyrosine as a model system for the LAT transporters. Methods: The precursor, cis-cyclobutane-1,3-diol ditosylate, its corresponding F-19 reference compound trans-3-fluorocyclobutanol (FCB), along with the cis-(3-fluorocyclobutyl)-tyrosine (3FCBT), were synthesized using standard organic chemistry methodologies. The non-radioactive 3FCBT was tested in competition and efflux stimulation cell assays using A549 human lung carcinoma cells with [3H]-D-Tyrosine. The metabolic stability of reference compound 3FCBT was studied in both rat hepatocytes and human plasma. Radiosynthesis methods using standard radiofluorination of the prosthetic group [18F]FCB and its conjugation to tyrosine gave the desired 3[18F]FCBT after chromatographic purification. In vitro studies were performed in A549 cells using 3[18F]FCBT and incubated at 37°C for 10, 20, 30 and 60 minutes with and without inhibitors fluoroethyl-tyrosine (FET) and non-radioactive 3FCBT. Results: The syntheses of cis-cyclobutane-1,3-diol ditosylate, trans-3-fluorocyclobutanol (FCB), along with the cis-(3-fluorocyclobutyl)-tyrosine (3FCBT) were established. 3FCBT was shown to block the uptake of [3H]-D-tyrosine in the competition cell assay and could stimulate the release of 3H]-D-Tyrosine from the cell in an efflux stimulation cell assay. 3FCBT showed very high stability in both rat hepatocytes (> 95%) and human plasma (> 95%). The unoptimized radiosynthesis gave the desired 3[18F]FCBT, via the prosthetic group [18F]FCB, in moderate yield (12%) with high radiochemical purity (> 99%). The cell uptake showed an increase of 3[18F]FCBT over time and reached a plateau of 5.87% after 30 minutes. Conclusions: The radiosynthesis of the prosthetic group [18F]FCB and its conjugation to tyrosine to give 3[18F]FCBT were successfully established. The introduction of 3[18F]FCBT into the LAT-targeting vector D-Tyr was characterized by a significant in vitro uptake in A549 cells and was actively transported into these cells. The encouraging results warrant further investigations of this tracer in the in vivo setting.
- Published
- 2011
38. Parallel Changes in Structural and Functional Measures of Optic Nerve Myelination after Optic Neuritis
- Author
-
Frishman, L, van der Walt, A, Kolbe, S, Mitchell, P, Wang, Y, Butzkueven, H, Egan, G, Yiannikas, C, Graham, S, Kilpatrick, T, Klistorner, A, Frishman, L, van der Walt, A, Kolbe, S, Mitchell, P, Wang, Y, Butzkueven, H, Egan, G, Yiannikas, C, Graham, S, Kilpatrick, T, and Klistorner, A
- Abstract
INTRODUCTION: Visual evoked potential (VEP) latency prolongation and optic nerve lesion length after acute optic neuritis (ON) corresponds to the degree of demyelination, while subsequent recovery of latency may represent optic nerve remyelination. We aimed to investigate the relationship between multifocal VEP (mfVEP) latency and optic nerve lesion length after acute ON. METHODS: Thirty acute ON patients were studied at 1, 3, 6 and 12 months using mfVEP and at 1 and 12 months with optic nerve MRI. LogMAR and low contrast visual acuity were documented. By one month, the mfVEP amplitude had recovered sufficiently for latency to be measured in 23 (76.7%) patients with seven patients having no recordable mfVEP in more than 66% of segments in at least one test. Only data from these 23 patients was analysed further. RESULTS: Both latency and lesion length showed significant recovery during the follow-up period. Lesion length and mfVEP latency were highly correlated at 1 (r = 0.94, p = <0.0001) and 12 months (r = 0.75, p < 0.001). Both measures demonstrated a similar trend of recovery. Speed of latency recovery was faster in the early follow-up period while lesion length shortening remained relatively constant. At 1 month, latency delay was worse by 1.76 ms for additional 1mm of lesion length while at 12 months, 1mm of lesion length accounted for 1.94 ms of latency delay. CONCLUSION: A strong association between two putative measures of demyelination in early and chronic ON was found. Parallel recovery of both measures could reflect optic nerve remyelination.
- Published
- 2015
39. Adolescent Toluene Inhalation in Rats Affects White Matter Maturation with the Potential for Recovery Following Abstinence
- Author
-
Homberg, J, Duncan, JR, Dick, ALW, Egan, G, Kolbe, S, Gavrilescu, M, Wright, D, Lubman, DI, Lawrence, AJ, Homberg, J, Duncan, JR, Dick, ALW, Egan, G, Kolbe, S, Gavrilescu, M, Wright, D, Lubman, DI, and Lawrence, AJ
- Abstract
Inhalant misuse is common during adolescence, with ongoing chronic misuse associated with neurobiological and cognitive abnormalities. While human imaging studies consistently report white matter abnormalities among long-term inhalant users, longitudinal studies have been lacking with limited data available regarding the progressive nature of such abnormalities, including the potential for recovery following periods of sustained abstinence. We exposed adolescent male Wistar rats (postnatal day 27) to chronic intermittent inhaled toluene (3,000 ppm) for 1 hour/day, 3 times/week for 8 weeks to model abuse patterns observed in adolescent and young adult human users. This dosing regimen resulted in a significant retardation in weight gain during the exposure period (p<0.05). In parallel, we performed longitudinal magnetic resonance imaging (T₂-weighted) and diffusion tensor imaging prior to exposure, and after 4 and 8 weeks, to examine the integrity of white matter tracts, including the anterior commissure and corpus callosum. We also conducted imaging after 8 weeks of abstinence to assess for potential recovery. Chronic intermittent toluene exposure during adolescence and early adulthood resulted in white matter abnormalities, including a decrease in axial (p<0.05) and radial (p<0.05) diffusivity. These abnormalities appeared region-specific, occurring in the anterior commissure but not the corpus callosum and were not present until after at least 4 weeks of exposure. Toluene-induced effects on both body weight and white matter parameters recovered following abstinence. Behaviourally, we observed a progressive decrease in rearing activity following toluene exposure but no difference in motor function, suggesting cognitive function may be more sensitive to the effects of toluene. Furthermore, deficits in rearing were present by 4 weeks suggesting that toluene may affect behaviour prior to detectable white matter abnormalities. Consequently, exposure to inhalants that co
- Published
- 2012
40. A platform for distributed analysis of neuroimaging data on global Grids
- Author
-
Stockinger, H, Buyya, R, Perrott, R, Kolbe, S, Ma, TC, Liu, W, Soh, WS, Egan, G, Stockinger, H, Buyya, R, Perrott, R, Kolbe, S, Ma, TC, Liu, W, Soh, WS, and Egan, G
- Published
- 2005
41. A randomized trial of high-dose vitamin D2 in relapsing-remitting multiple sclerosis
- Author
-
Stein, M. S., primary, Liu, Y., additional, Gray, O. M., additional, Baker, J. E., additional, Kolbe, S. C., additional, Ditchfield, M. R., additional, Egan, G. F., additional, Mitchell, P. J., additional, Harrison, L. C., additional, Butzkueven, H., additional, and Kilpatrick, T. J., additional
- Published
- 2011
- Full Text
- View/download PDF
42. 594 In vivo detection of mammary tumor and its lung metastases in the 4T1 metastasis mouse model by PET imaging using [F-18]-D-FMT (BAY 869596)
- Author
-
Zitzmann-Kolbe, S., primary, Strube, A., additional, Frisk, A.L., additional, Tsukada, H., additional, Gekeler, V., additional, Graham, K., additional, and Berndorff, D., additional
- Published
- 2010
- Full Text
- View/download PDF
43. The occurrence of dystonia in upper-limb multiple sclerosis tremor.
- Author
-
Van der Walt, A., Buzzard, K., Sung, S., Spelman, T., Kolbe, S. C., Marriott, M., Butzkueven, H., and Evans, A.
- Subjects
MULTIPLE sclerosis research ,PATHOLOGICAL physiology ,TREMOR ,DYSTONIA ,THERAPEUTICS ,BOTULINUM toxin - Abstract
Background: The pathophysiology of multiple sclerosis (MS) tremor is uncertain with limited phenotypical studies available. Objective: To investigate whether dystonia contributes to MS tremor and its severity. Methods: MS patients (n = 54) with and without disabling uni- or bilateral upper limb tremor were recruited (39 limbs per group). We rated tremor severity, writing and Archimedes spiral drawing; cerebellar dysfunction (SARA score); the Global Dystonia Scale (GDS) for proximal and distal upper limbs, dystonic posturing, mirror movements, geste antagoniste, and writer's cramp. Results: Geste antagoniste, mirror dystonia, and dystonic posturing were more frequent and severe (p < 0.001) and dystonia scores were correlated with tremor severity in tremor compared to non-tremor patients. A 1-unit increase in distal dystonia predicted a 0.52-Bain unit (95% confidence interval (CI) 0.08-0.97), p = 0.022) increase in tremor severity and a 1-unit (95% CI 0.48-1.6,p = 0.001) increase in drawing scores. A 1-unit increase in proximal dystonia predicted 0.93-Bain unit increase (95% CI 0.45-1.41,p < 0.001) in tremor severity and 1.5-units (95% CI 0.62-2.41,p = 0.002) increase in the drawing score. Cerebellar function in the tremor limb and tremor severity was correlated (p < 0.001). Conclusions: Upper limb dystonia is common in MS tremor suggesting that MS tremor pathophysiology involves cerebello-pallido-thalamo-cortical network dysfunction. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
44. Sézary T-cell activating factor is a Chlamydia pneumoniae-associated protein.
- Author
-
Abrams, J T, Vonderheid, E C, Kolbe, S, Appelt, D M, Arking, E J, and Balin, B J
- Abstract
We previously identified a protein that was stimulatory for malignant Sézary T cells, termed Sézary T-cell activating factor (SAF). However, the identity of this protein has not been fully elucidated, nor has it's role been determined in the pathogenesis of cutaneous T-cell lymphoma (CTCL). The basis for epidermotropism and proliferation of malignant cells in the skin of patients with CTCL is unknown. Using a monoclonal antibody inhibitory for SAF activity, we demonstrated that SAF is present in the skin of 16 of 27 samples from patients with mycosis fungoides, the predominant form of CTCL. In this report, the SAF determinant is demonstrated to be associated with Chlamydia pneumoniae bacteria by immunohistochemistry, immunoelectron microscopy, and culture analysis. Reactivity of antibodies against an outer membrane protein of C. pneumoniae or against the lipopolysaccharide of Chlamydiae spp. demonstrated that these determinants are coexpressed in 90% of the SAF-positive samples. We confirmed the presence of C. pneumoniae DNA and RNA in the skin by PCR and reverse transcription-PCR and by sequence analysis of the PCR products. The expression of the C. pneumoniae antigens and SAF appears to be associated with active disease in that C. pneumoniae antigens were absent or greatly diminished in the skin of three patients examined after Psoralen and long-wave UVA radiation treatment. Our results suggest that SAF is a Chlamydia-associated protein and that further investigation is warranted to determine whether SAF and C. pneumoniae play a role in the pathogenesis of CTCL.
- Published
- 1999
45. Numerical calculations for the vibrations of a kettledrum shell
- Author
-
Kolbe, S. and Kolbe, S.
- Published
- 1989
46. Revising the Advised Protocol for Optical coherence tomography Study Terminology and Elements (APOSTEL): from recommendations to formal guidelines
- Author
-
Cruz-Herranz, A., Aytulun, A., Balk, L., Maier, O., Zimmermann, H., Feltgen, N., Wolf, S., Holz, F., Finger, R., Azuara-Blanco, A., Piero Barboni, Rebolleda, G., Sanchez-Dalmau, B., Debuc, D. Cabrera, Gabilondo, I., Havla, J., Imitola, J., Toosy, A., Outteryck, O., Nolan, R., Kolbe, S., Frederiksen, J. L., Leocani, L., Yeh, A., Ringelstein, M., Pihl-Jensen, G., Preiningerova, J. L., Schippling, S., Costello, F., Aktas, O., Hartung, H-P, Saidha, S., Martinez-Lapiscina, E. H., Lagreze, W. A., Schuman, J. S., Villoslada, P., Calabresi, P., Balcer, L., Petzold, A., Paul, F., Green, A. J., Brandt, A. U., and Albrecht, P.
47. Voxelwise regularisation of high angular resolution diffusion imaging data
- Author
-
Johnston, L. A., Kolbe, S., Iven Mareels, and Egan, G. F.
48. Correlation between structural and functional measures of optic nerve myelination
- Author
-
Yiannikas, C., Walt, A., Mitchell, P., Wang, Y., Kolbe, S., Kilpatrick, T., Butzkueven, H., Egan, G., Arvind, H., Stuart Graham, Paine, M., and Alexander Klistorner
49. Voxelwise regularisation of high angular resolution diffusion imaging data
- Author
-
Johnston, L. A., Kolbe, S., Mareels, I. M., and Gary Egan
50. Voxelwise regularisation of high angular resolution diffusion imaging data
- Author
-
Leigh Johnston, Kolbe, S., Mareels, I. M. Y., and Egan, G. F.
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.