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472 results on '"Koivunen, Peppi"'

4. Glutarate regulates T cell metabolism and anti-tumour immunity

Author

Minogue, Eleanor, Cunha, Pedro P., Wadsworth, Brennan J., Grice, Guinevere L., Sah-Teli, Shiv K., Hughes, Rob, Bargiela, David, Quaranta, Alessandro, Zurita, Javier, Antrobus, Robin, Velica, Pedro, Barbieri, Laura, Wheelock, Craig E., Koivunen, Peppi, Nathan, James A., Foskolou, Iosifina P., and Johnson, Randall S.

Published
2023
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5. Iron drives anabolic metabolism through active histone demethylation and mTORC1

Author

Shapiro, Jason S., Chang, Hsiang-Chun, Tatekoshi, Yuki, Zhao, Zibo, Waxali, Zohra Sattar, Hong, Bong Jin, Chen, Haimei, Geier, Justin A., Bartom, Elizabeth T., De Jesus, Adam, Nejad, Farnaz K., Mahmoodzadeh, Amir, Sato, Tatsuya, Ramos-Alonso, Lucia, Romero, Antonia Maria, Martinez-Pastor, Maria Teresa, Jiang, Shang-Chuan, Sah-Teli, Shiv K., Li, Liming, Bentrem, David, Lopaschuk, Gary, Ben-Sahra, Issam, O’Halloran, Thomas V., Shilatifard, Ali, Puig, Sergi, Bergelson, Joy, Koivunen, Peppi, and Ardehali, Hossein

Published
2023
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6. PHD1 controls muscle mTORC1 in a hydroxylation-independent manner by stabilizing leucyl tRNA synthetase

Author

D’Hulst, Gommaar, Soro-Arnaiz, Inés, Masschelein, Evi, Veys, Koen, Fitzgerald, Gillian, Smeuninx, Benoit, Kim, Sunghoon, Deldicque, Louise, Blaauw, Bert, Carmeliet, Peter, Breen, Leigh, Koivunen, Peppi, Zhao, Shi-Min, and De Bock, Katrien

Subjects
Medical Physiology, Biomedical and Clinical Sciences, Clinical Research, Adult, Aged, Aging, Amino Acids, Animals, Disease Models, Animal, Female, HEK293 Cells, Humans, Hydroxylation, Hypoxia-Inducible Factor-Proline Dioxygenases, Leucine, Leucine-tRNA Ligase, Male, Mechanistic Target of Rapamycin Complex 1, Mice, Mice, Inbred C57BL, Mice, Knockout, Muscle Development, Muscles, Oxygen, Procollagen-Proline Dioxygenase, Signal Transduction
Abstract

mTORC1 is an important regulator of muscle mass but how it is modulated by oxygen and nutrients is not completely understood. We show that loss of the prolyl hydroxylase domain isoform 1 oxygen sensor in mice (PHD1KO) reduces muscle mass. PHD1KO muscles show impaired mTORC1 activation in response to leucine whereas mTORC1 activation by growth factors or eccentric contractions was preserved. The ability of PHD1 to promote mTORC1 activity is independent of its hydroxylation activity but is caused by decreased protein content of the leucyl tRNA synthetase (LRS) leucine sensor. Mechanistically, PHD1 interacts with and stabilizes LRS. This interaction is promoted during oxygen and amino acid depletion and protects LRS from degradation. Finally, elderly subjects have lower PHD1 levels and LRS activity in muscle from aged versus young human subjects. In conclusion, PHD1 ensures an optimal mTORC1 response to leucine after episodes of metabolic scarcity.

Published
2020

7. Supplementary Figure S8 from A Histone Methylation–MAPK Signaling Axis Drives Durable Epithelial–Mesenchymal Transition in Hypoxic Pancreatic Cancer

Author

Brown, Brooke A., primary, Myers, Paul J., primary, Adair, Sara J., primary, Pitarresi, Jason R., primary, Sah-Teli, Shiv K., primary, Campbell, Logan A., primary, Hart, William S., primary, Barbeau, Michelle C., primary, Leong, Kelsey, primary, Seyler, Nicholas, primary, Kane, William, primary, Lee, Kyoung Eun, primary, Stelow, Edward, primary, Jones, Marieke, primary, Simon, M. Celeste, primary, Koivunen, Peppi, primary, Bauer, Todd W., primary, Stanger, Ben Z., primary, and Lazzara, Matthew J., primary

Published
2024
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8. Data from A Histone Methylation–MAPK Signaling Axis Drives Durable Epithelial–Mesenchymal Transition in Hypoxic Pancreatic Cancer

Author

Brown, Brooke A., primary, Myers, Paul J., primary, Adair, Sara J., primary, Pitarresi, Jason R., primary, Sah-Teli, Shiv K., primary, Campbell, Logan A., primary, Hart, William S., primary, Barbeau, Michelle C., primary, Leong, Kelsey, primary, Seyler, Nicholas, primary, Kane, William, primary, Lee, Kyoung Eun, primary, Stelow, Edward, primary, Jones, Marieke, primary, Simon, M. Celeste, primary, Koivunen, Peppi, primary, Bauer, Todd W., primary, Stanger, Ben Z., primary, and Lazzara, Matthew J., primary

Published
2024
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9. Supplementary Data from A Histone Methylation–MAPK Signaling Axis Drives Durable Epithelial–Mesenchymal Transition in Hypoxic Pancreatic Cancer

Author

Brown, Brooke A., primary, Myers, Paul J., primary, Adair, Sara J., primary, Pitarresi, Jason R., primary, Sah-Teli, Shiv K., primary, Campbell, Logan A., primary, Hart, William S., primary, Barbeau, Michelle C., primary, Leong, Kelsey, primary, Seyler, Nicholas, primary, Kane, William, primary, Lee, Kyoung Eun, primary, Stelow, Edward, primary, Jones, Marieke, primary, Simon, M. Celeste, primary, Koivunen, Peppi, primary, Bauer, Todd W., primary, Stanger, Ben Z., primary, and Lazzara, Matthew J., primary

Published
2024
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13. Higher haemoglobin levels are associated with impaired periodontal status.

Author

Tapiola, Atte, Tapio, Joona, Vähänikkilä, Hannu, Tegelberg, Paula, Ylöstalo, Pekka, and Koivunen, Peppi

Subjects
RISK factors of periodontal disease, RISK assessment, RESEARCH funding, HEMOGLOBINS, SEX distribution, SMOKING, DESCRIPTIVE statistics, CHI-squared test, ANALYSIS of variance, DATA analysis software, CONFIDENCE intervals, SOCIAL classes
Abstract

Aim: Cellular oxygen sensing mechanisms have been linked to periodontal condition, and levels of haemoglobin (Hb) (the main carrier of oxygen) can be used as a surrogate measure for hypoxia. We aimed to examine relations between Hb levels and key periodontal health parameters in a general population. Materials and Methods: The population comprised 1711 (47% male) subjects from the Northern Finland Birth Cohort 1966, for whom an oral health examination was carried out at 46 years of age and whose Hb levels were within the Finnish reference values. Relative risks (RRs) were estimated using Poisson regression models. Results: The low‐Hb tertile (mean Hb 133 g/L) had healthier anthropometric, metabolic and periodontal health parameters than the high‐Hb tertile (mean Hb 151 g/L). Multivariable regression models adjusted for risk factors showed Hb levels to be positively associated with alveolar bone loss (ABL) and periodontal pocket depth (PPD), although the associations were weaker after adjustment for key metabolic parameters and were strongly influenced by smoking status. Conclusions: Hb levels within the normal variation are positively associated with PPD and ABL. The association between Hb levels and periodontal condition appeared to be more complex than had previously been anticipated. [ABSTRACT FROM AUTHOR]

Published
2024
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15. A 2-Hydroxybutyrate- mediated feedback loop regulates muscular fatigue

Author

Wadsworth, Brennan J, primary, Leiwe, Marina, additional, Minogue, Eleanor A, additional, Cunha, Pedro P, additional, Engman, Viktor, additional, Brombach, Carolin, additional, Asvestis, Christos, additional, Sah-Teli, Shiv K, additional, Marklund, Emilia, additional, Koivunen, Peppi, additional, Ruas, Jorge L, additional, Rundqvist, Helene, additional, Lanner, Johanna T, additional, and Johnson, Randall S, additional

Published
2023
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20. Biallelic loss-of-function P4HTM gene variants cause hypotonia, hypoventilation, intellectual disability, dysautonomia, epilepsy, and eye abnormalities (HIDEA syndrome)

Author

Rahikkala, Elisa, Myllykoski, Matti, Hinttala, Reetta, Vieira, Päivi, Nayebzadeh, Naemeh, Weiss, Simone, Plomp, Astrid S., Bittner, Reginald E., Kurki, Mitja I., Kuismin, Outi, Lewis, Andrea M., Väisänen, Marja-Leena, Kokkonen, Hannaleena, Westermann, Jonne, Bernert, Günther, Tuominen, Hannu, Palotie, Aarno, Aaltonen, Lauri, Yang, Yaping, Potocki, Lorraine, Moilanen, Jukka, van Koningsbruggen, Silvana, Wang, Xia, Schmidt, Wolfgang M., Koivunen, Peppi, and Uusimaa, Johanna

Published
2019
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24. Prolyl hydroxylation by EglN2 destabilizes FOXO3a by blocking its interaction with the USP9x deubiquitinase.

Author

Zheng, Xingnan, Zhai, Bo, Koivunen, Peppi, Shin, Sandra, Lu, Gang, Liu, Jiayun, Geisen, Christoph, Chakraborty, Abhishek, Moslehi, Javid, Smalley, David, Wei, Xin, Chen, Xian, Chen, Zhengming, Beres, Justine, Zhang, Jing, Tsao, Jen, Brenner, Mitchell, Zhang, Yuqing, Fan, Cheng, DePinho, Ronald, Paik, Jihye, Gygi, Steven, Kaelin, William, and Zhang, Qing

Subjects
Cyclin D1, EglN2, FOXO3a, USP9x, breast cancer, prolyl hydroxylation, Animals, Cell Line, Cells, Cultured, Cyclin D1, Forkhead Box Protein O3, Forkhead Transcription Factors, Gene Expression Regulation, Neoplastic, Hydroxylation, Hypoxia-Inducible Factor-Proline Dioxygenases, MCF-7 Cells, Mice, Protein Binding, Protein Stability, Ubiquitin Thiolesterase
Abstract

The three EglN prolyl hydroxylases (EglN1, EglN2, and EglN3) regulate the stability of the HIF transcription factor. We recently showed that loss of EglN2, however, also leads to down-regulation of Cyclin D1 and decreased cell proliferation in a HIF-independent manner. Here we report that EglN2 can hydroxylate FOXO3a on two specific prolyl residues in vitro and in vivo. Hydroxylation of these sites prevents the binding of USP9x deubiquitinase, thereby promoting the proteasomal degradation of FOXO3a. FOXO transcription factors can repress Cyclin D1 transcription. Failure to hydroxylate FOXO3a promotes its accumulation in cells, which in turn suppresses Cyclin D1 expression. These findings provide new insights into post-transcriptional control of FOXO3a and provide a new avenue for pharmacologically altering Cyclin D1 activity.

Published
2014

26. Characterization of genetic variants in the EGLN1/PHD2 gene identified in a European collection of patients with erythrocytosis

Author

Delamare, Marine, primary, Le Roy, Amandine, additional, Pacault, Mathilde, additional, Schmitt, Loïc, additional, Garrec, Céline, additional, Maaziz, Nada, additional, Myllykoski, Matti, additional, Rimbert, Antoine, additional, Karaghiannis, Valéna, additional, Aral, Bernard, additional, Catherwood, Mark, additional, Airaud, Fabrice, additional, Mansour-Hendili, Lamisse, additional, Hoogewijs, David, additional, Peroni, Edoardo, additional, Idriss, Salam, additional, Lesieur, Valentine, additional, Caillaud, Amandine, additional, Si-Tayeb, Karim, additional, Chariau, Caroline, additional, Gaignerie, Anne, additional, Rab, Minke, additional, Haferlach, Torsten, additional, Meggendorfer, Manja, additional, Bézieau, Stéphane, additional, Benetti, Andrea, additional, Casadevall, Nicole, additional, Hirsch, Pierre, additional, Rose, Christian, additional, Wemeau, Mathieu, additional, Galacteros, Frédéric, additional, Cassinat, Bruno, additional, Bellosillo, Beatriz, additional, Bento, Celeste, additional, Van Wijk, Richard, additional, Petrides, Petro E., additional, Randi, Maria Luigia, additional, McMullin, Mary Frances, additional, Koivunen, Peppi, additional, Girodon, François, additional, Gardie, Betty, additional, and Consortium, ECYT, additional

Published
2023
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27. Supplementary Figure S5 from (R)-2-Hydroxyglutarate Inhibits KDM5 Histone Lysine Demethylases to Drive Transformation in IDH-Mutant Cancers

Author

Gunn, Kathryn, primary, Myllykoski, Matti, primary, Cao, John Z., primary, Ahmed, Manna, primary, Huang, Bofu, primary, Rouaisnel, Betty, primary, Diplas, Bill H., primary, Levitt, Michael M., primary, Looper, Ryan, primary, Doench, John G., primary, Ligon, Keith L., primary, Kornblum, Harley I., primary, McBrayer, Samuel K., primary, Yan, Hai, primary, Duy, Cihangir, primary, Godley, Lucy A., primary, Koivunen, Peppi, primary, and Losman, Julie-Aurore, primary

Published
2023
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29. Supplementary Table S8 from (R)-2-Hydroxyglutarate Inhibits KDM5 Histone Lysine Demethylases to Drive Transformation in IDH-Mutant Cancers

Author

Gunn, Kathryn, primary, Myllykoski, Matti, primary, Cao, John Z., primary, Ahmed, Manna, primary, Huang, Bofu, primary, Rouaisnel, Betty, primary, Diplas, Bill H., primary, Levitt, Michael M., primary, Looper, Ryan, primary, Doench, John G., primary, Ligon, Keith L., primary, Kornblum, Harley I., primary, McBrayer, Samuel K., primary, Yan, Hai, primary, Duy, Cihangir, primary, Godley, Lucy A., primary, Koivunen, Peppi, primary, and Losman, Julie-Aurore, primary

Published
2023
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30. Data from (R)-2-Hydroxyglutarate Inhibits KDM5 Histone Lysine Demethylases to Drive Transformation in IDH-Mutant Cancers

Author

Gunn, Kathryn, primary, Myllykoski, Matti, primary, Cao, John Z., primary, Ahmed, Manna, primary, Huang, Bofu, primary, Rouaisnel, Betty, primary, Diplas, Bill H., primary, Levitt, Michael M., primary, Looper, Ryan, primary, Doench, John G., primary, Ligon, Keith L., primary, Kornblum, Harley I., primary, McBrayer, Samuel K., primary, Yan, Hai, primary, Duy, Cihangir, primary, Godley, Lucy A., primary, Koivunen, Peppi, primary, and Losman, Julie-Aurore, primary

Published
2023
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31. Supplementary Data: list of figures and tables from (R)-2-Hydroxyglutarate Inhibits KDM5 Histone Lysine Demethylases to Drive Transformation in IDH-Mutant Cancers

Author

Gunn, Kathryn, primary, Myllykoski, Matti, primary, Cao, John Z., primary, Ahmed, Manna, primary, Huang, Bofu, primary, Rouaisnel, Betty, primary, Diplas, Bill H., primary, Levitt, Michael M., primary, Looper, Ryan, primary, Doench, John G., primary, Ligon, Keith L., primary, Kornblum, Harley I., primary, McBrayer, Samuel K., primary, Yan, Hai, primary, Duy, Cihangir, primary, Godley, Lucy A., primary, Koivunen, Peppi, primary, and Losman, Julie-Aurore, primary

Published
2023
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32. Figure S4 from USP28 Deficiency Promotes Breast and Liver Carcinogenesis as well as Tumor Angiogenesis in a HIF-independent Manner

Author

Richter, Kati, primary, Paakkola, Teija, primary, Mennerich, Daniela, primary, Kubaichuk, Kateryna, primary, Konzack, Anja, primary, Ali-Kippari, Heidi, primary, Kozlova, Nina, primary, Koivunen, Peppi, primary, Haapasaari, Kirsi-Maria, primary, Jukkola-Vuorinen, Arja, primary, Teppo, Hanna-Riikka, primary, Dimova, Elitsa Y., primary, Bloigu, Risto, primary, Szabo, Zoltan, primary, Kerkelä, Risto, primary, and Kietzmann, Thomas, primary

Published
2023
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33. Supplemental table 1 from USP28 Deficiency Promotes Breast and Liver Carcinogenesis as well as Tumor Angiogenesis in a HIF-independent Manner

Author

Richter, Kati, primary, Paakkola, Teija, primary, Mennerich, Daniela, primary, Kubaichuk, Kateryna, primary, Konzack, Anja, primary, Ali-Kippari, Heidi, primary, Kozlova, Nina, primary, Koivunen, Peppi, primary, Haapasaari, Kirsi-Maria, primary, Jukkola-Vuorinen, Arja, primary, Teppo, Hanna-Riikka, primary, Dimova, Elitsa Y., primary, Bloigu, Risto, primary, Szabo, Zoltan, primary, Kerkelä, Risto, primary, and Kietzmann, Thomas, primary

Published
2023
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34. Supplemental table 2 from USP28 Deficiency Promotes Breast and Liver Carcinogenesis as well as Tumor Angiogenesis in a HIF-independent Manner

Author

Richter, Kati, primary, Paakkola, Teija, primary, Mennerich, Daniela, primary, Kubaichuk, Kateryna, primary, Konzack, Anja, primary, Ali-Kippari, Heidi, primary, Kozlova, Nina, primary, Koivunen, Peppi, primary, Haapasaari, Kirsi-Maria, primary, Jukkola-Vuorinen, Arja, primary, Teppo, Hanna-Riikka, primary, Dimova, Elitsa Y., primary, Bloigu, Risto, primary, Szabo, Zoltan, primary, Kerkelä, Risto, primary, and Kietzmann, Thomas, primary

Published
2023
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37. Data from The Pro-Oncogenic Adaptor CIN85 Acts as an Inhibitory Binding Partner of Hypoxia-Inducible Factor Prolyl Hydroxylase 2

Author

Kozlova, Nina, primary, Mennerich, Daniela, primary, Samoylenko, Anatoly, primary, Dimova, Elitsa Y., primary, Koivunen, Peppi, primary, Biterova, Ekaterina, primary, Richter, Kati, primary, Hassinen, Antti, primary, Kellokumpu, Sakari, primary, Manninen, Aki, primary, Miinalainen, Ilkka, primary, Glumoff, Virpi, primary, Ruddock, Lloyd, primary, Drobot, Lyudmyla Borysivna, primary, and Kietzmann, Thomas, primary

Published
2023
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38. Supplementary Materials and Methods from The Pro-Oncogenic Adaptor CIN85 Acts as an Inhibitory Binding Partner of Hypoxia-Inducible Factor Prolyl Hydroxylase 2

Author

Kozlova, Nina, primary, Mennerich, Daniela, primary, Samoylenko, Anatoly, primary, Dimova, Elitsa Y., primary, Koivunen, Peppi, primary, Biterova, Ekaterina, primary, Richter, Kati, primary, Hassinen, Antti, primary, Kellokumpu, Sakari, primary, Manninen, Aki, primary, Miinalainen, Ilkka, primary, Glumoff, Virpi, primary, Ruddock, Lloyd, primary, Drobot, Lyudmyla Borysivna, primary, and Kietzmann, Thomas, primary

Published
2023
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39. Supplementary Data from The Pro-Oncogenic Adaptor CIN85 Acts as an Inhibitory Binding Partner of Hypoxia-Inducible Factor Prolyl Hydroxylase 2

Author

Kozlova, Nina, primary, Mennerich, Daniela, primary, Samoylenko, Anatoly, primary, Dimova, Elitsa Y., primary, Koivunen, Peppi, primary, Biterova, Ekaterina, primary, Richter, Kati, primary, Hassinen, Antti, primary, Kellokumpu, Sakari, primary, Manninen, Aki, primary, Miinalainen, Ilkka, primary, Glumoff, Virpi, primary, Ruddock, Lloyd, primary, Drobot, Lyudmyla Borysivna, primary, and Kietzmann, Thomas, primary

Published
2023
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40. (R)-2-hydroxyglutarate inhibits KDM5 histone lysine demethylases to drive transformation in IDH-mutant cancers

Author

Gunn, Kathryn, primary, Myllykoski, Matti, additional, Cao, John Z., additional, Ahmed, Manna, additional, Huang, Bofu, additional, Rouaisnel, Betty, additional, Diplas, Bill H., additional, Levitt, Michael M., additional, Looper, Ryan, additional, Doench, John G., additional, Ligon, Keith L., additional, Kornblum, Harley I., additional, McBrayer, Samuel K., additional, Yan, Hai, additional, Duy, Cihangir, additional, Godley, Lucy A., additional, Koivunen, Peppi, additional, and Losman, Julie-Aurore, additional

Published
2023
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43. A histone methylation-MAPK signaling axis drives durable epithelial-mesenchymal transition in hypoxic pancreas cancer

Author

Brown, Brooke A., primary, Myers, Paul J., additional, Adair, Sara J., additional, Pitarresi, Jason R., additional, Sah-Teli, Shiv K., additional, Hart, William S., additional, Barbeau, Michelle, additional, Leong, Kelsey, additional, Seyler, Nicholas, additional, Kane, William, additional, Lee, Kyoung Eun, additional, Stelow, Edward, additional, Simon, M. Celeste, additional, Koivunen, Peppi, additional, Bauer, Todd W., additional, Stanger, Ben Z., additional, and Lazzara, Matthew J., additional

Published
2022
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44. Iron Drives Anabolic Metabolism Through Active Histone Demethylation and mTORC1

Author

Shapiro, Jason, primary, Chang, Hsiang-Chun, additional, Zhao, Zibo, additional, Waxali, Zohra, additional, Hong, Bong Jin, additional, Chen, Haimei, additional, Geier, Justin, additional, Bartom, Elizabeth, additional, De Jesus, Adam, additional, Keyhani-Nejad, Farnaz, additional, Sato, Tatsuya, additional, Ramos-Alonso, Lucia, additional, Romero, Antonia, additional, Martínez-Pastor, María Teresa, additional, Jiang, Shang-Chuan, additional, Sah-Teli, Shiv K., additional, Li, Liming, additional, Bentrem, David, additional, Lopaschuk, Gary, additional, BEN-SAHRA, Issam, additional, O'Halloran, Thomas, additional, Shilatifard, Ali, additional, Puig, Sergi, additional, Bergelson, Joy, additional, Koivunen, Peppi, additional, and Ardehali, Hossein, additional

Published
2022
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45. HIDEA syndrome is caused by biallelic, pathogenic, rare or founder P4HTM variants impacting the active site or the overall stability of the P4H‐TM protein

Author

Kraatari‐Tiri, Minna, primary, Soikkonen, Leila, additional, Myllykoski, Matti, additional, Jamshidi, Yalda, additional, Karimiani, Ehsan G., additional, Komulainen‐Ebrahim, Jonna, additional, Kallankari, Hanna, additional, Mignot, Cyril, additional, Depienne, Christel, additional, Keren, Boris, additional, Nougues, Marie‐Christine, additional, Alsahlawi, Zahra, additional, Romito, Antonio, additional, Martini, Javier, additional, Toosi, Mehran B., additional, Carroll, Christopher J., additional, Tripolszki, Kornelia, additional, Bauer, Peter, additional, Uusimaa, Johanna, additional, Bertoli‐Avella, Aida M., additional, Koivunen, Peppi, additional, and Rahikkala, Elisa, additional

Published
2022
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48. Abstract 5853: (R)-2-hydroxyglutarate inhibits KDM5 histone lysine demethylases to drive tumorigenesis in IDH-mutant cancers

Author

Gunn, Kathryn E., primary, Myllykoski, Matti, additional, Cao, John, additional, Huang, Bofu, additional, Rouaisnel, Betty, additional, Diplas, Bill, additional, Levitt, Michael M., additional, Looper, Ryan, additional, Doench, John G., additional, Ligon, Keith L., additional, Kornblum, Harley I., additional, Yan, Hai, additional, McBrayer, Samuel, additional, Godley, Lucy A., additional, Koivunen, Peppi, additional, and Losman, Julie-Aurore, additional

Published
2022
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