1,364 results on '"Kohnle, A."'
Search Results
2. Modelling the transmission dynamics of H9N2 avian influenza viruses in a live bird market
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Pinotti, Francesco, Kohnle, Lisa, Lourenço, José, Gupta, Sunetra, Hoque, Md. Ahasanul, Mahmud, Rashed, Biswas, Paritosh, Pfeiffer, Dirk, and Fournié, Guillaume
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- 2024
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3. Gender and the Social Cure in Undergraduate Physics Students: Physics Identity, Self-Efficacy, Belonging, and Wellbeing
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Ewan Bottomley, Vivienne Wild, Paula J. Miles, Kenneth I. Mavor, and Antje Kohnle
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The social cure is the concept that strong connections and social bonds are good for wellbeing and physical health. Having strong social support makes hardship easier to cope with. We hypothesize that we could apply the relationship to educational contexts, with a sense of belonging as part of the cohort or community helping students to cope with educational hurdles, resulting in greater wellbeing. We examined the case of women in physics. Previous research has suggested that women in physics classes report a lesser sense of belonging than men. We aimed to replicate this finding and examine how a sense of belonging relates to wellbeing. We surveyed 310 physics students (205 men, 105 women) from a small research-intensive university in the UK. The survey measured students' physics identity, sense of belonging to the physics community, self-efficacy (belief in ability to complete physics-based tasks), and general wellbeing. We found that women and men reported similar levels of belonging and wellbeing, although women reported less physics identity and self-efficacy. Self-efficacy explained a significant fraction of the variance in wellbeing for both men and women. Additionally, belonging explained variance in wellbeing over and above self-efficacy and physics identity for men, but not for women. These results indicate that for men there is a stronger association between belonging and wellbeing, compared to women, but that it does not result in women having an overall lower sense of wellbeing.
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- 2024
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4. Gender and the Social Cure in Undergraduate Physics Students: Physics Identity, Self-efficacy, Belonging, and Wellbeing
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Bottomley, Ewan, Wild, Vivienne, Miles, Paula J., Mavor, Kenneth I., and Kohnle, Antje
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- 2024
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5. A growth-effective age-based periodic site-index for the estimation of dynamic forest site productivity under environmental changes
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Chaofang Yue, Hans-Peter Kahle, Joachim Klädtke, and Ulrich Kohnle
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Height-age model ,Adaptive modeling ,Growth trends ,Climate change impact ,Self-calibration ,Norway spruce ,Forestry ,SD1-669.5 - Abstract
Abstract Key message A novel periodic site index is introduced for the quantification of dynamic forest site productivity. The measure is age-independent, sensitive to environmental changes and efficient for the estimation and prediction of stand height and stand volume increment. Context Accurate and up-to-date prediction of site productivity is crucial for the sustainable management of forest ecosystems, especially under environmental changes. Aims The aim of this study was to introduce a novel concept: a periodic site index based on growth-effective age for the quantification of dynamic forest site productivity. Methods The growth-effective age based periodic site index is estimated from repeated or multi-temporal measurements of stand dominant height. Furthermore, a recursive procedure to update the underlying site index model is presented by using repeated measurements of stand dominant height. The database used in this study comprised repeated measurements of 945 Norway spruce (Picea abies L.) experimental plots at 508 different locations in Southwest Germany. Results The evaluation shows that periodic site index is statistically superior to the conventional site index, based on chronological stand age, for estimating stand height and stand volume increment. The analysis of temporal differences between growth-effective stand age and chronological stand age and between periodic site index and conventional site index in the period 1900 to 2020 reveals trends referring to stand age and site productivity, which corroborate earlier regional studies on forest growth trends due to environmental changes. Conclusions The periodic site index is a better indicator for site productivity than conventional site index. Under conditions of environmental changes, conventional site index is biased, whereas the growth-effective age based site index provides an unbiased estimate of stand height development. With the more widespread application of remote sensing techniques, such as airborne laser scanning, the availability of multi-temporal stand height data will increase in the near future. The novel concept provides an adaptive modeling approach perfectly suited to these data for an improved estimation and prediction of forest site productivity under environmental changes and can straightforwardly be applied also to uneven-aged and multi-species stands.
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- 2024
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6. Avian influenza overview June–September 2024
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European Food Safety Authority, European Centre for Disease Prevention and Control, European Union Reference Laboratory for Avian Influenza, Leonidas Alexakis, Hubert Buczkowski, Mariette Ducatez, Alice Fusaro, Jose L. Gonzales, Thijs Kuiken, Karl Ståhl, Christoph Staubach, Olov Svartström, Calogero Terregino, Katriina Willgert, Roxane Delacourt, and Lisa Kohnle
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avian influenza ,captive birds ,HPAI ,humans ,monitoring ,poultry ,Nutrition. Foods and food supply ,TX341-641 ,Chemical technology ,TP1-1185 - Abstract
Abstract Between 15 June and 20 September 2024, 75 highly pathogenic avian influenza (HPAI) A(H5) and A(H7) virus detections were reported in domestic (16) and wild (59) birds across 11 countries in Europe. Although the overall number of detections in Europe continued to be low compared to previous epidemiological years, an increase in cases along the Atlantic, North Sea and Baltic coasts was notable, particularly an increase in the detection of HPAI viruses in colony‐breeding seabirds. Besides EA‐2022‐BB and other circulating genotypes, these detections also included EA‐2023‐DT, a new genotype that may transmit more efficiently among gulls. In Germany, HPAI A(H7N5) virus emerged in a poultry establishment near the border with the Netherlands. No new HPAI virus detections in mammals were reported in Europe during this period, but the number of reportedly affected dairy cattle establishments in the United States of America (USA) rose to >230 in 14 states, and HPAI virus was identified in three new mammal species. Between 21 June and 20 September 2024, 19 new human cases with avian influenza virus infection were reported from the USA (six A(H5N1) cases and five A(H5) cases), Cambodia (five A(H5N1) cases, including one fatal), China (one fatal A(H5N6) case and one A(H9N2) case), and Ghana (one A(H9N2) case). Most of the human cases (90%, n = 17/19) had reported exposure to poultry, live poultry markets, or dairy cattle prior to avian influenza virus detection or onset of illness. Human infections with avian influenza viruses remain rare and no evidence of human‐to‐human transmission has been documented in the reporting period. The risk of infection with currently circulating avian A(H5) influenza viruses of clade 2.3.4.4b in Europe remains low for the general public in the European Union/European Economic Area (EU/EEA). The risk of infection remains low‐to‐moderate for those occupationally or otherwise exposed to infected animals or contaminated environments.
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- 2024
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7. Modelling the transmission dynamics of H9N2 avian influenza viruses in a live bird market
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Francesco Pinotti, Lisa Kohnle, José Lourenço, Sunetra Gupta, Md. Ahasanul Hoque, Rashed Mahmud, Paritosh Biswas, Dirk Pfeiffer, and Guillaume Fournié
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Science - Abstract
Abstract H9N2 avian influenza viruses (AIVs) are a major concern for the poultry sector and human health in countries where this subtype is endemic. By fitting a model simulating H9N2 AIV transmission to data from a field experiment, we characterise the epidemiology of the virus in a live bird market in Bangladesh. Many supplied birds arrive already exposed to H9N2 AIVs, resulting in many broiler chickens entering the market as infected, and many indigenous backyard chickens entering with pre-existing immunity. Most susceptible chickens become infected within one day spent at the market, owing to high levels of viral transmission within market and short latent periods, as brief as 5.3 hours. Although H9N2 AIV transmission can be substantially reduced under moderate levels of cleaning and disinfection, effective risk mitigation also requires a range of additional interventions targeting markets and other nodes along the poultry production and distribution network.
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- 2024
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8. Avian influenza overview March–June 2024
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European Food Safety Authority, European Centre for Disease Prevention and Control, European Union Reference Laboratory for Avian Influenza, Leonidas Alexakis, Alice Fusaro, Thijs Kuiken, Gražina Mirinavičiūtė, Karl Ståhl, Christoph Staubach, Olov Svartström, Calogero Terregino, Katriina Willgert, Roxane Delacourt, Sonagnon Martin Goudjihounde, Malin Grant, Stefania Tampach, and Lisa Kohnle
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avian influenza ,captive birds ,HPAI ,humans ,monitoring ,poultry ,Nutrition. Foods and food supply ,TX341-641 ,Chemical technology ,TP1-1185 - Abstract
Abstract Between 16 March and 14 June 2024, 42 highly pathogenic avian influenza (HPAI) A(H5) virus detections were reported in domestic (15) and wild (27) birds across 13 countries in Europe. Although the overall number of detections in Europe has not been this low since the 2019–2020 epidemiological year, HPAI viruses continue to circulate at a very low level. Most detections in poultry were due to indirect contact with wild birds, but there was also secondary spread. Outside Europe, the HPAI situation intensified particularly in the USA, where a new A(H5N1) virus genotype (B3.13) has been identified in >130 dairy herds in 12 states. Infection in cattle appears to be centred on the udder, with milk from infected animals showing high viral loads and representing a new vehicle of transmission. Apart from cattle, HPAI viruses were identified in two other mammal species (alpaca and walrus) for the first time. Between 13 March and 20 June 2024, 14 new human cases with avian influenza virus infection were reported from Vietnam (one A(H5N1), one A(H9N2)), Australia (with travel history to India, one A(H5N1)), USA (three A(H5N1)), China (two A(H5N6), three A(H9N2), one A(H10N3)), India (one A(H9N2)), and Mexico (one fatal A(H5N2) case). The latter case was the first laboratory‐confirmed human infection with avian influenza virus subtype A(H5N2). Most of the human cases had reported exposure to poultry, live poultry markets, or dairy cattle prior to avian influenza virus detection or onset of illness. Human infections with avian influenza viruses remain rare and no human‐to‐human transmission has been observed. The risk of infection with currently circulating avian A(H5) influenza viruses of clade 2.3.4.4b in Europe remains low for the general public in the EU/EEA. The risk of infection remains low‐to‐moderate for those occupationally or otherwise exposed to infected animals or contaminated environments.
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- 2024
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9. Amplification of avian influenza virus circulation along poultry marketing chains in Bangladesh: A controlled field experiment
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Kohnle, Lisa, Das, Tridip, Uddin, Md. Helal, Nath, Sanjib Chandra, Mohsin, Md. Abu Shoieb, Mahmud, Rashed, Biswas, Paritosh Kumar, Hoque, Md. Ahasanul, Pfeiffer, Dirk Udo, and Fournié, Guillaume
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- 2024
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10. Molecular evidence of anteroposterior patterning in adult echinoderms
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Formery, L., Peluso, P., Kohnle, I., Malnick, J., Thompson, J. R., Pitel, M., Uhlinger, K. R., Rokhsar, D. S., Rank, D. R., and Lowe, C. J.
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- 2023
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11. The PTPN2/PTPN1 inhibitor ABBV-CLS-484 unleashes potent anti-tumour immunity
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Baumgartner, Christina K., Ebrahimi-Nik, Hakimeh, Iracheta-Vellve, Arvin, Hamel, Keith M., Olander, Kira E., Davis, Thomas G. R., McGuire, Kathleen A., Halvorsen, Geoff T., Avila, Omar I., Patel, Chirag H., Kim, Sarah Y., Kammula, Ashwin V., Muscato, Audrey J., Halliwill, Kyle, Geda, Prasanthi, Klinge, Kelly L., Xiong, Zhaoming, Duggan, Ryan, Mu, Liang, Yeary, Mitchell D., Patti, James C., Balon, Tyler M., Mathew, Rebecca, Backus, Carey, Kennedy, Domenick E., Chen, Angeline, Longenecker, Kenton, Klahn, Joseph T., Hrusch, Cara L., Krishnan, Navasona, Hutchins, Charles W., Dunning, Jax P., Bulic, Marinka, Tiwari, Payal, Colvin, Kayla J., Chuong, Cun Lan, Kohnle, Ian C., Rees, Matthew G., Boghossian, Andrew, Ronan, Melissa, Roth, Jennifer A., Wu, Meng-Ju, Suermondt, Juliette S. M. T., Knudsen, Nelson H., Cheruiyot, Collins K., Sen, Debattama R., Griffin, Gabriel K., Golub, Todd R., El-Bardeesy, Nabeel, Decker, Joshua H., Yang, Yi, Guffroy, Magali, Fossey, Stacey, Trusk, Patricia, Sun, Im-Meng, Liu, Yue, Qiu, Wei, Sun, Qi, Paddock, Marcia N., Farney, Elliot P., Matulenko, Mark A., Beauregard, Clay, Frost, Jennifer M., Yates, Kathleen B., Kym, Philip R., and Manguso, Robert T.
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- 2023
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12. Interactive homework to support student learning of measurement uncertainty in quantum mechanics
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Gina Passante and Antje Kohnle
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Special aspects of education ,LC8-6691 ,Physics ,QC1-999 - Abstract
[This paper is part of the Focused Collection in Investigating and Improving Quantum Education through Research.] When thinking about measurement uncertainty in a laboratory experiment that features quantum mechanical effects, it is important to consider both the physical principles of underlying quantum theory (e.g., the uncertainty due to quantum mechanical superposition states) as well as the limitations of the measurement (e.g., the spread in outcomes due to instrumental imperfections). Prior research has found student difficulties with these sources of uncertainty both individually and in students’ ability to distinguish between them. Additionally, students are less likely to access ideas related to experimental uncertainty in quantum mechanical contexts unless explicitly prompted. In this work, we have developed a simulation-homework activity focused on the Stern-Gerlach experiment to help students develop an understanding for the different ways that modifying the quantum state, improving the experimental setup, or collecting more data, will affect the resulting outcome distribution. The activity uses a purpose-built interactive simulation, coupled with homework questions grounded in the literature on student thinking about uncertainty. We analyze the effectiveness of the activity with students in junior-level undergraduate quantum mechanics courses using pre- and post-testing. The results indicate that the activity was successful in helping students distinguish between quantum mechanical uncertainty and uncertainty caused by instrumental imperfections, and in increasing the accessibility of instrumental limitations in this context. The activity can thus support student understanding of the core concept of quantum uncertainty, as well as link between the often abstract nature of quantum theory and laboratory experiments with their limitations.
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- 2024
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13. Mother trees, altruistic fungi, and the perils of plant personification
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Robinson, David G., Ammer, Christian, Polle, Andrea, Bauhus, Jürgen, Aloni, Roni, Annighöfer, Peter, Baskin, Tobias I., Blatt, Michael R., Bolte, Andreas, Bugmann, Harald, Cohen, Jerry D., Davies, Peter J., Draguhn, Andreas, Hartmann, Henrik, Hasenauer, Hubert, Hepler, Peter K., Kohnle, Ulrich, Lang, Friederike, Löf, Magnus, Messier, Christian, Munné-Bosch, Sergi, Murphy, Angus, Puettmann, Klaus J., Marchant, Iván Quiroz, Raven, Peter H., Robinson, David, Sanders, Dale, Seidel, Dominik, Schwechheimer, Claus, Spathelf, Peter, Steer, Martin, Taiz, Lincoln, Wagner, Sven, Henriksson, Nils, and Näsholm, Torgny
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- 2024
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14. Forest growth in Europe shows diverging large regional trends
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Hans Pretzsch, Miren del Río, Catia Arcangeli, Kamil Bielak, Malgorzata Dudzinska, David Ian Forrester, Joachim Klädtke, Ulrich Kohnle, Thomas Ledermann, Robert Matthews, Jürgen Nagel, Ralf Nagel, François Ningre, Thomas Nord-Larsen, and Peter Biber
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Medicine ,Science - Abstract
Abstract Forests cover about one-third of Europe’s surface and their growth is essential for climate protection through carbon sequestration and many other economic, environmental, and sociocultural ecosystem services. However, reports on how climate change affects forest growth are contradictory, even for same regions. We used 415 unique long-term experiments including 642 plots across Europe covering seven tree species and surveys from 1878 to 2016, and showed that on average forest growth strongly accelerated since the earliest surveys. Based on a subset of 189 plots in Scots pine (the most widespread tree species in Europe) and high-resolution climate data, we identified clear large-regional differences; growth is strongly increasing in Northern Europe and decreasing in the Southwest. A less pronounced increase, which is probably not mainly driven by climate, prevails on large areas of Western, Central and Eastern Europe. The identified regional growth trends suggest adaptive management on regional level for achieving climate-smart forests.
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- 2023
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15. Avian influenza overview December 2023–March 2024
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European Food Safety Authority, European Centre for Disease Prevention and Control, European Union Reference Laboratory for Avian Influenza, Alice Fusaro, José L. Gonzales, Thijs Kuiken, Gražina Mirinavičiūtė, Éric Niqueux, Karl Ståhl, Christoph Staubach, Olov Svartström, Calogero Terregino, Katriina Willgert, Francesca Baldinelli, Roxane Delacourt, Alexandros Georganas, and Lisa Kohnle
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avian influenza ,captive birds ,HPAI ,humans ,monitoring ,poultry ,Nutrition. Foods and food supply ,TX341-641 ,Chemical technology ,TP1-1185 - Abstract
Abstract Between 2 December 2023 and 15 March 2024, highly pathogenic avian influenza (HPAI) A(H5) outbreaks were reported in domestic (227) and wild (414) birds across 26 countries in Europe. Compared to previous years, although still widespread, the overall number of HPAI virus detections in birds was significantly lower, among other reasons, possibly due to some level of flock immunity in previously affected wild bird species, resulting in reduced contamination of the environment, and a different composition of circulating A(H5N1) genotypes. Most HPAI outbreaks reported in poultry were primary outbreaks following the introduction of the virus by wild birds. Outside Europe, the majority of outbreaks in poultry were still clustered in North America, while the spread of A(H5) to more naïve wild bird populations on mainland Antarctica is of particular concern. For mammals, A(H5N5) was reported for the first time in Europe, while goat kids in the United States of America represented the first natural A(H5N1) infection in ruminants. Since the last report and as of 12 March 2024, five human avian influenza A(H5N1) infections, including one death, three of which were clade 2.3.2.1c viruses, have been reported by Cambodia. China has reported two human infections, including one fatal case, with avian influenza A(H5N6), four human infections with avian influenza A(H9N2) and one fatal case with co‐infection of seasonal influenza A(H3N2) and avian influenza A(H10N5). The latter case was the first documented human infection with avian influenza A(H10N5). Human infections with avian influenza remain rare and no sustained human‐to‐human infection has been observed. The risk of infection with currently circulating avian H5 influenza viruses of clade 2.3.4.4b in Europe remains low for the general population in the EU/EEA. The risk of infection remains low to moderate for those occupationally or otherwise exposed to infected animals.
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- 2024
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16. Forest growth in Europe shows diverging large regional trends
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Pretzsch, Hans, del Río, Miren, Arcangeli, Catia, Bielak, Kamil, Dudzinska, Malgorzata, Forrester, David Ian, Klädtke, Joachim, Kohnle, Ulrich, Ledermann, Thomas, Matthews, Robert, Nagel, Jürgen, Nagel, Ralf, Ningre, François, Nord-Larsen, Thomas, and Biber, Peter
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- 2023
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17. Avian influenza overview September–December 2023
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European Food Safety Authority, European Centre for Disease Prevention and Control, European Union Reference Laboratory for Avian Influenza, Cornelia Adlhoch, Alice Fusaro, José L. Gonzales, Thijs Kuiken, Gražina Mirinavičiūtė, Éric Niqueux, Karl Ståhl, Christoph Staubach, Calogero Terregino, Katriina Willgert, Francesca Baldinelli, Kateryna Chuzhakina, Roxane Delacourt, Alexandros Georganas, Milen Georgiev, and Lisa Kohnle
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avian influenza ,captive birds ,HPAI ,humans, monitoring ,poultry ,wild birds ,Nutrition. Foods and food supply ,TX341-641 ,Chemical technology ,TP1-1185 - Abstract
Abstract Between 2 September and 1 December 2023, highly pathogenic avian influenza (HPAI) A(H5) outbreaks were reported in domestic (88) and wild (175) birds across 23 countries in Europe. Compared to previous years, the increase in the number of HPAI virus detections in waterfowl has been delayed, possibly due to a later start of the autumn migration of several wild bird species. Common cranes were the most frequently affected species during this reporting period with mortality events being described in several European countries. Most HPAI outbreaks reported in poultry were primary outbreaks following the introduction of the virus by wild birds, with the exception of Hungary, where two clusters involving secondary spread occurred. HPAI viruses identified in Europe belonged to eleven different genotypes, seven of which were new. With regard to mammals, the serological survey conducted in all fur farms in Finland revealed 29 additional serologically positive farms during this reporting period. Wild mammals continued to be affected mostly in the Americas, from where further spread into wild birds and mammals in the Antarctic region was described for the first time. Since the last report and as of 1 December 2023, three fatal and one severe human A(H5N1) infection with clade 2.3.2.1c viruses have been reported by Cambodia, and one A(H9N2) infection was reported from China. No human infections related to the avian influenza detections in animals in fur farms in Finland have been reported, and human infections with avian influenza remain a rare event. The risk of infection with currently circulating avian H5 influenza viruses of clade 2.3.4.4b in Europe remains low for the general population in the EU/EEA. The risk of infection remains low to moderate for occupationally or otherwise exposed people to infected birds or mammals (wild or domesticated); this assessment covers different situations that depend on the level of exposure.
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- 2023
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18. Annual report on surveillance for avian influenza in poultry and wild birds in Member States of the European Union in 2022
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European Food Safety Authority (EFSA), Inma Aznar, Lisa Kohnle, Anca Stoicescu, Aniek vanHoutum, and Gabriele Zancanaro
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2022 ,avian influenza ,HPAI ,LPAI ,poultry ,surveillance ,Nutrition. Foods and food supply ,TX341-641 ,Chemical technology ,TP1-1185 - Abstract
Abstract All European Union (EU) Member States (MSs) are required to implement surveillance for avian influenza (AI) in poultry and wild birds and (i) to notify the outbreaks, when relevant and (ii) to report the results to the responsible authority. In addition, Iceland, Norway, Switzerland and the United Kingdom (Northern Ireland) also implement ongoing surveillance programmes to monitor occurrences of avian influenza viruses (AIVs) in poultry and wild birds. EFSA received a mandate from the European Commission to collate, validate, analyse and summarise the data resulting from these AI surveillance programmes in an annual report. The present report summarises the results of the surveillance activities carried out in MSs, Iceland, Norway, Switzerland and the United Kingdom (Northern Ireland) in 2022. Overall, the 31 reporting countries (RCs) sampled 22,171 poultry establishments (PEs) during the 2022 surveillance activity: 18,490 PEs were sampled for serological testing and 3775 were sampled for virological testing. Some PEs were therefore sampled for both type of analytical methods. Out of the 18,490 PEs sampled for serological testing, 15 (0.08%) were seropositive for influenza A(H5) viruses. Out of the 3775 PEs sampled for virological testing, 74 PEs (1.96%) were positive to the virological assay for influenza A(H5) viruses. Seropositive PEs were found in four RCs (Belgium, Poland, Spain and Sweden) and as in previous years, the highest percentages of seropositive PEs were found in PEs raising breeding geese and waterfowl game birds. Out of these 15 seropositive PEs, 3 also tested positive by polymerase chain reaction (PCR) for influenza A (H5) viruses – 2 for highly pathogenic avian influenza virus (HPAIV) and 1 low pathogenic avian influenza (LPAI) (H5N3). In relation to the virological surveys, 10 RCs (32%) out of the 31 reported the detection of A (H5) viruses in 74 PEs, covering 12 different poultry categories. More specifically, 54 reported HPAIV A(H5N1), 17 HPAIV (H5N8), 2 AIV (H5N1) with unknown virus pathogenicity and 1 low pathogenic avian influenza (LPAI) (H5N3). Additionally, six PEs tested positive for undefined AIVs in three RCs. A total of 32,143 wild birds were sampled, with 4163 (12.95%) wild birds testing positive for HPAIVs by PCR, from 25 RCs. In contrast to previous years, out of the 4163 wild birds testing positive for HPAIv, subtype A(H5N1) virus was the main influenza A virus subtype identified among the wild bird testing positive for HPAIVs (3942; 95%). In addition, RCs also reported 984 wild birds testing positive for low pathogenic avian influenza (LPAI). Out of those, for 660 (67%) it was ascertained that the subtype was non‐A(H5/H7); 260 (26%) wild birds tested positive for LPAIv of A(H5 or H7) subtypes and the remaining 64 (7%) LPAI viruses were belonging to other H‐subtypes.
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- 2023
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19. 1403-A PTPN2/N1 inhibitor ABBV-CLS-484 unleashes potent anti-tumor immunity
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Wei Qiu, Qi Sun, Yi Yang, Chirag Patel, Meng Sun, Yue Liu, Kyle Halliwill, Sarah Kim, Rebecca Mathew, Jennifer M Frost, Jennifer A Roth, Domenick Kennedy, Robert T Manguso, Kathleen B Yates, Hakimeh Ebrahimi-Nik, Christina K Baumgartner, Arvin Iracheta-Vellve, Keith M Hamel, Kira Olander, Thomas GR Davis, Kathleen A McGuire, Geoff T Halvorsen, Omar I Avila, Ashwin V Kammula, Audrey J Muscato, Prasanthi Geda, Kelly Klinge, Zhaoming Xiong, Ryan Duggan, Liang Mu, Mitchell D Yeary, James C Patti, Tyler M Balon, Carey Backus, Angeline Chen, Kenton Longenecker, Joseph Klahn, Cara Hrusch, Navasona Krishnan, Charles W Hutchins, Jacqueline Aguado, Marinka Bulic, Payal Tiwari, Kayla J Colvin, Cun Lan Chuong, Ian C Kohnle, Matthew G Rees, Andrew Boghossian, Melissa Ronan, Meng-Ju Wu, Debattama R Sen, Gabriel K Griffin, Nabeel El-Bardeesy, Patricia Trusk, Joshua H Decker, Stacey Fossey, Marcia N Paddock, Elliot P Farney, Clay Beauregard, and Philip R Kym
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Published
- 2023
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20. Assessment of listing and categorisation of animal diseases within the framework of the Animal Health Law (Regulation (EU) 2016/429): infection with Gyrodactylus salaris (GS)
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EFSA Panel on Animal Health and Welfare (AHAW), Søren Saxmose Nielsen, Julio Alvarez, Paolo Calistri, Elisabetta Canali, Julian Ashley Drewe, Bruno Garin‐Bastuji, José Luis Gonzales Rojas, Christian Gortázar, Mette S Herskin, Virginie Michel, Miguel Ángel Miranda Chueca, Barbara Padalino, Helen Clare Roberts, Hans Spoolder, Karl Ståhl, Antonio Velarde, Arvo Viltrop, Christoph Winckler, James Bron, Niels Jorgen Olesen, Hilde Sindre, David Stone, Niccolò Vendramin, Sotiria Eleni Antoniou, Anna Eleonora Karagianni, Lisa Kohnle, Alexandra Papanikolaou, and Dominique Joseph Bicout
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aquatic animals ,Animal Health Law ,Gyrodactylus salaris ,G. salaris ,listing ,categorisation ,Nutrition. Foods and food supply ,TX341-641 ,Chemical technology ,TP1-1185 - Abstract
Abstract Infection with Gyrodactylus salaris was assessed according to the criteria of the Animal Health Law (AHL), in particular, the criteria of Article 7 on disease profile and impacts, Article 5 on its eligibility to be listed, Annex IV for its categorisation according to disease prevention and control rules as laid down in Article 9 and Article 8 for listing animal species related to infection with G. salaris. The assessment was performed following the ad hoc method for data collection and assessment previously developed by AHAW panel and already published. The outcome reported is the median of the probability ranges provided by the experts, which indicates whether each criterion is fulfilled (lower bound ≥ 66%) or not (upper bound ≤ 33%), or whether there is uncertainty about fulfilment. Reasoning points are reported for criteria with an uncertain outcome. According to the assessment here performed, it is uncertain whether infection with G. salaris can be considered eligible to be listed for Union intervention according to Article 5 of the AHL (33–70% probability). According to the criteria in Annex IV, for the purpose of categorisation related to the level of prevention and control as in Article 9 of the AHL, the AHAW Panel concluded that Infection with G. salaris does not meet the criteria in Section 1 and 3 (Category A and C; 1–5% and 10–33% probability of fulfilling the criteria, respectively) and it is uncertain whether it meets the criteria in Sections 2, 4 and 5 (Categories B, D and E; 33–80%, 33–66% and 33–80% probability of meeting the criteria, respectively). The animal species to be listed for infection with G. salaris according to Article 8 criteria are provided.
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- 2023
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21. Avian influenza overview June–September 2023
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European Food Safety Authority, European Centre for Disease Prevention and Control, European Union Reference Laboratory for Avian Influenza, Cornelia Adlhoch, Alice Fusaro, José L Gonzales, Thijs Kuiken, Gražina Mirinavičiūtė, Éric Niqueux, Christoph Staubach, Calogero Terregino, Francesca Baldinelli, Alessia Rusinà, and Lisa Kohnle
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avian influenza ,captive birds ,HPAI ,humans ,monitoring ,poultry ,Nutrition. Foods and food supply ,TX341-641 ,Chemical technology ,TP1-1185 - Abstract
Abstract Between 24 June and 1 September 2023, highly pathogenic avian influenza (HPAI) A(H5) outbreaks were reported in domestic (25) and wild (482) birds across 21 countries in Europe. Most of these outbreaks appeared to be clustered along coastlines with only few HPAI virus detections inland. In poultry, all HPAI outbreaks were primary and sporadic with most of them occurring in the United Kingdom. In wild birds, colony‐breeding seabirds continued to be most heavily affected, but an increasing number of HPAI virus detections in waterfowl is expected in the coming weeks. The current epidemic in wild birds has already surpassed the one of the previous epidemiological year in terms of total number of HPAI virus detections. As regards mammals, A(H5N1) virus was identified in 26 fur animal farms in Finland. Affected species included American mink, red and Arctic fox, and common raccoon dog. The most likely source of introduction was contact with gulls. Wild mammals continued to be affected worldwide, mostly red foxes and different seal species. Since the last report and as of 28 September 2023, two A(H5N1) clade 2.3.4.4b virus detections in humans have been reported by the United Kingdom, and three human infections with A(H5N6) and two with A(H9N2) were reported from China, respectively. No human infection related to the avian influenza detections in animals on fur farms in Finland or in cats in Poland have been reported, and human infections with avian influenza remain a rare event. The risk of infection with currently circulating avian H5 influenza viruses of clade 2.3.4.4b in Europe remains low for the general population in the EU/EEA. The risk of infection remains low to moderate for occupationally or otherwise exposed people to infected birds or mammals (wild or domesticated); this assessment covers different situations that depend on the level of exposure.
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- 2023
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22. Competition-based mortality and tree losses. An essential component of net primary productivity
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Pretzsch, Hans, del Río, Miren, Arcangeli, Catia, Bielak, Kamil, Dudzinska, Malgorzata, Ian Forrester, David, Kohnle, Ulrich, Ledermann, Thomas, Matthews, Robert, Nagel, Ralf, Ningre, François, Nord-Larsen, Thomas, Szeligowski, Henryk, and Biber, Peter
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- 2023
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23. In vivo CRISPR screens reveal the landscape of immune evasion pathways across cancer
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Dubrot, Juan, Du, Peter P., Lane-Reticker, Sarah Kate, Kessler, Emily A., Muscato, Audrey J., Mehta, Arnav, Freeman, Samuel S., Allen, Peter M., Olander, Kira E., Ockerman, Kyle M., Wolfe, Clara H., Wiesmann, Fabius, Knudsen, Nelson H., Tsao, Hsiao-Wei, Iracheta-Vellve, Arvin, Schneider, Emily M., Rivera-Rosario, Andrea N., Kohnle, Ian C., Pope, Hans W., Ayer, Austin, Mishra, Gargi, Zimmer, Margaret D., Kim, Sarah Y., Mahapatra, Animesh, Ebrahimi-Nik, Hakimeh, Frederick, Dennie T., Boland, Genevieve M., Haining, W. Nicholas, Root, David E., Doench, John G., Hacohen, Nir, Yates, Kathleen B., and Manguso, Robert T.
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- 2022
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24. Luther und das Landeskirchentum
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Kohnle, Armin, primary
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- 2023
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25. Friedrich der Weise als Briefschreiber
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Kohnle, Armin, primary
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- 2023
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26. Melanchthon deutsch VII: Aus Melanchthons Alltag
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Philipp Melanchthon, Michael Beyer, Christiane Domtera-Schleichardt, Armin Kohnle, Stefan Rhein
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- 2023
27. Avian influenza overview April – June 2023
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European Food Safety Authority, European Centre for Disease Prevention and Control, European Union Reference Laboratory for Avian Influenza, Cornelia Adlhoch, Alice Fusaro, José L Gonzales, Thijs Kuiken, Angeliki Melidou, Gražina Mirinavičiūtė, Éric Niqueux, Karl Ståhl, Christoph Staubach, Calogero Terregino, Francesca Baldinelli, Alessandro Broglia, and Lisa Kohnle
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avian influenza ,captive birds ,HPAI ,humans ,monitoring ,poultry ,Nutrition. Foods and food supply ,TX341-641 ,Chemical technology ,TP1-1185 - Abstract
Abstract Between 29 April and 23 June 2023, highly pathogenic avian influenza (HPAI) A(H5N1) virus (clade 2.3.4.4b) outbreaks were reported in domestic (98) and wild (634) birds across 25 countries in Europe. A cluster of outbreaks in mulard ducks for foie gras production was concentrated in Southwest France, whereas the overall A(H5N1) situation in poultry in Europe and worldwide has eased. In wild birds, black‐headed gulls and several new seabird species, mostly gulls and terns (e.g. sandwich terns), were heavily affected, with increased mortality being observed in both adults and juveniles after hatching. Compared to the same period last year, dead seabirds have been increasingly found inland and not only along European coastlines. As regards mammals, A(H5N1) virus was identified in 24 domestic cats and one caracal in Poland between 10 and 30 June 2023. Affected animals showed neurological and respiratory signs, sometimes mortality, and were widely scattered across nine voivodeships in the country. All cases are genetically closely related and identified viruses cluster with viruses detected in poultry (since October 2022, but now only sporadic) and wild birds (December 2022–January 2023) in the past. Uncertainties still exist around their possible source of infection, with no feline‐to‐feline or feline‐to‐human transmission reported so far. Since 10 May 2023 and as of 4 July 2023, two A(H5N1) clade 2.3.4.4b virus detections in humans were reported from the United Kingdom, and two A(H9N2) and one A(H5N6) human infections in China. In addition, one person infected with A(H3N8) in China has died. The risk of infection with currently circulating avian H5 influenza viruses of clade 2.3.4.4b in Europe remains low for the general population in the EU/EEA, low to moderate for occupationally or otherwise exposed people to infected birds or mammals (wild or domesticated).
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- 2023
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28. Briefe und Akten zur Kirchenpolitik Friedrichs des Weisen und Johanns...: Band 2: 1518–1522. Bearbeitet von Stefan Michel, Beate Kusche, Ulrike Ludwig, Konstantin Enge, Dagmar Blaha und Alexander Bartmuß unter Mitarbeit von Saskia Jähnigen und Steven Bickel
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Armin Kohnle, Manfred Rudersdorf, Armin Kohnle, Manfred Rudersdorf
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- 2022
29. Assessment of listing and categorisation of animal diseases within the framework of the Animal Health Law (Regulation (EU) No 2016/429): infectious pancreatic necrosis (IPN)
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EFSA Panel on Animal Health and Welfare (AHAW), Søren Saxmose Nielsen, Julio Alvarez, Paolo Calistri, Elisabetta Canali, Julian Ashley Drewe, Bruno Garin‐Bastuji, José Luis Gonzales Rojas, Christian Gortázar, Mette S Herskin, Virginie Michel, Miguel Ángel Miranda, Barbara Padalino, Paolo Pasquali, Helen Clare Roberts, Hans Spoolder, Karl Ståhl, Antonio Velarde, Arvo Viltrop, Christoph Winckler, James Bron, Niels Jorgen Olesen, Hilde Sindre, David Stone, Niccolò Vendramin, Sotiria‐Eleni Antoniou, Lisa Kohnle, Alexandra Papanikolaou, Anna Eleonora Karagianni, and Dominique Joseph Bicout
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aquatic animals ,Animal Health Law ,infectious pancreatic necrosis ,listing ,categorisation ,impact ,Nutrition. Foods and food supply ,TX341-641 ,Chemical technology ,TP1-1185 - Abstract
Abstract Infectious pancreatic necrosis (IPN) was assessed according to the criteria of the Animal Health Law (AHL), in particular, the criteria of Article 7 on disease profile and impacts, Article 5 on its eligibility to be listed, Annex IV for its categorisation according to disease prevention and control rules as in Article 9, and Article 8 for listing animal species related to IPN. The assessment was performed following a methodology previously published. The outcome reported is the median of the probability ranges provided by the experts, which indicates whether each criterion is fulfilled (lower bound ≥ 66%) or not (upper bound ≤ 33%), or whether there is uncertainty about fulfilment. Reasoning points are reported for criteria with an uncertain outcome. According to the assessment here performed, it is uncertain whether IPN can be considered eligible to be listed for Union intervention according to Article 5 of the AHL (50–90% probability). According to the criteria in Annex IV, for the purpose of categorisation related to the level of prevention and control as in Article 9 of the AHL, the AHAW Panel concluded that IPN does not meet the criteria in Section 1 (Category A; 0–1% probability of meeting the criteria) and it is uncertain whether it meets the criteria in Sections 2, 3, 4 and 5 (Categories B, C, D and E; 33–66%, 33–66%, 50–90% and 50–99% probability of meeting the criteria, respectively). The animal species to be listed for IPN according to Article 8 criteria are provided.
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- 2023
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30. Avian influenza overview March – April 2023
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European Food Safety Authority, European Centre for Disease Prevention and Control, European Union Reference Laboratory for Avian Influenza, Cornelia Adlhoch, Alice Fusaro, José L Gonzales, Thijs Kuiken, Grazina Mirinaviciute, Éric Niqueux, Karl Stahl, Christoph Staubach, Calogero Terregino, Alessandro Broglia, Lisa Kohnle, and Francesca Baldinelli
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avian influenza ,captive birds ,HPAI ,humans ,monitoring ,poultry ,Nutrition. Foods and food supply ,TX341-641 ,Chemical technology ,TP1-1185 - Abstract
Abstract Between 2 March and 28 April 2023, highly pathogenic avian influenza (HPAI) A(H5Nx) virus, clade 2.3.4.4b, outbreaks were reported in domestic (106) and wild (610) birds across 24 countries in Europe. Poultry outbreaks occurred less frequently compared to the previous reporting period and compared to spring 2022. Most of these outbreaks were classified as primary outbreaks without secondary spread and some of them associated with atypical disease presentation, in particular low mortality. In wild birds, black‐headed gulls continued to be heavily affected, while also other threatened wild bird species, such as the peregrine falcon, showed increased mortality. The ongoing epidemic in black‐headed gulls, many of which breed inland, may increase the risk for poultry, especially in July–August, when first‐year birds disperse from the breeding colonies. HPAI A(H5N1) virus also continued to expand in the Americas, including in mammalian species, and is expected to reach the Antarctic in the near future. HPAI virus infections were detected in six mammal species, particularly in marine mammals and mustelids, for the first time, while the viruses currently circulating in Europe retain a preferential binding for avian‐like receptors. Since 13 March 2022 and as of 10 May 2023, two A(H5N1) clade 2.3.4.4b virus detections in humans were reported from China (1), and Chile (1), as well as three A(H9N2) and one A(H3N8) human infections in China. The risk of infection with currently circulating avian H5 influenza viruses of clade 2.3.4.4b in Europe remains low for the general population in the EU/EEA, and low to moderate for occupationally or otherwise exposed people.
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- 2023
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31. Die schmalkaldischen Bundestage und die Konzilsfrage
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Kohnle, Armin, primary
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- 2022
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32. Avian influenza overview June–September 2024.
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Alexakis, Leonidas, Buczkowski, Hubert, Ducatez, Mariette, Fusaro, Alice, Gonzales, Jose L., Kuiken, Thijs, Ståhl, Karl, Staubach, Christoph, Svartström, Olov, Terregino, Calogero, Willgert, Katriina, Delacourt, Roxane, and Kohnle, Lisa
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AVIAN influenza A virus ,AVIAN influenza ,VIRUS diseases ,INFLUENZA viruses ,DAIRY cattle - Abstract
Between 15 June and 20 September 2024, 75 highly pathogenic avian influenza (HPAI) A(H5) and A(H7) virus detections were reported in domestic (16) and wild (59) birds across 11 countries in Europe. Although the overall number of detections in Europe continued to be low compared to previous epidemiological years, an increase in cases along the Atlantic, North Sea and Baltic coasts was notable, particularly an increase in the detection of HPAI viruses in colony‐breeding seabirds. Besides EA‐2022‐BB and other circulating genotypes, these detections also included EA‐2023‐DT, a new genotype that may transmit more efficiently among gulls. In Germany, HPAI A(H7N5) virus emerged in a poultry establishment near the border with the Netherlands. No new HPAI virus detections in mammals were reported in Europe during this period, but the number of reportedly affected dairy cattle establishments in the United States of America (USA) rose to >230 in 14 states, and HPAI virus was identified in three new mammal species. Between 21 June and 20 September 2024, 19 new human cases with avian influenza virus infection were reported from the USA (six A(H5N1) cases and five A(H5) cases), Cambodia (five A(H5N1) cases, including one fatal), China (one fatal A(H5N6) case and one A(H9N2) case), and Ghana (one A(H9N2) case). Most of the human cases (90%, n = 17/19) had reported exposure to poultry, live poultry markets, or dairy cattle prior to avian influenza virus detection or onset of illness. Human infections with avian influenza viruses remain rare and no evidence of human‐to‐human transmission has been documented in the reporting period. The risk of infection with currently circulating avian A(H5) influenza viruses of clade 2.3.4.4b in Europe remains low for the general public in the European Union/European Economic Area (EU/EEA). The risk of infection remains low‐to‐moderate for those occupationally or otherwise exposed to infected animals or contaminated environments. [ABSTRACT FROM AUTHOR]
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- 2024
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33. Multimedia and Digital Media in Physics Instruction
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Girwidz, Raimund, Kohnle, Antje, Michelini, Marisa, Series Editor, Fischer, Hans Ernst, editor, and Girwidz, Raimund, editor
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- 2021
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34. Sketching to Support Visual Learning with Interactive Tutorials
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Kohnle, Antje, Ainsworth, Shaaron E., and Passante, Gina
- Abstract
[This paper is part of the Focused Collection on Curriculum Development: Theory into Design.] This manuscript discusses how learning theories have been applied to shape multiple aspects of the design of curricular activities combining interactive computer simulations and University of Washington style tutorials (so-called simulation-tutorials). When considering the curriculum goals (what to teach), we drew on theories of representational competence and learning with multiple representations. When considering how to teach, we drew on theories of constructivism and sketching to learn, leveraging the advantages of sketching as a constructive process that requires students to make their current understanding explicit in visual form, to make specific choices in order to make their ideas concrete, and to organize information to support deep processing. When considering when and why to sketch, we drew upon theories of representational competence, learning with multiple representations and inventing to prepare for future learning to describe six distinct purposes of sketching both prior to and while working with the simulation. This is illustrated by presenting specific sketching tasks to show how theory informed the design and the sequencing of the tasks. We followed a design-based research method, working at two institutions in two countries and with multiple cohorts of students to understand, and where necessary improve, the design of these activities, primarily basing our decisions on the sketches that students had created. The key message of this research is that the design and sequencing of sketching tasks needs to be carefully matched to the pedagogical rationale and that theory can shape these decisions in many ways.
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- 2020
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35. Prioritisation of zoonotic diseases for coordinated surveillance systems under the One Health approach for cross‐border pathogens that threaten the Union
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European Food Safety Authority (EFSA), John Berezowski, Katinka deBalogh, Fernanda C Dórea, Simon Rüegg, Alessandro Broglia, Andrea Gervelmeyer, and Lisa Kohnle
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prioritisation ,decision‐making ,ranking ,scoring ,zoonoses ,transboundary ,Nutrition. Foods and food supply ,TX341-641 ,Chemical technology ,TP1-1185 - Abstract
Abstract In the context of the initiative ‘CP‐g‐22‐04.01 Direct grants to Member States’ authorities', EFSA was requested to develop and conduct a prioritisation of zoonotic diseases, in collaboration with Member States, to identify priorities for the establishment of a coordinated surveillance system under the One Health approach. The methodology developed by EFSA's Working Group on One Health surveillance was based on a combination of multi‐criteria decision analysis and the Delphi method. It comprised the establishment of a list of zoonotic diseases, definition of pathogen‐ and surveillance‐related criteria, weighing of those criteria, scoring of zoonotic diseases by Member States, calculation of summary scores, and ranking of the list of zoonotic diseases according to those scores. Results were presented at EU and country level. A prioritisation workshop was organised with the One Health subgroup of EFSA's Scientific Network for Risk Assessment in Animal Health and Welfare in November 2022 to discuss and agree on a final list of priorities for which specific surveillance strategies would be developed. Those 10 priorities were Crimean‐Congo haemorrhagic fever, echinococcosis (both E. granulosus and E. multilocularis), hepatitis E, influenza (avian), influenza (swine), Lyme borreliosis, Q‐fever, Rift Valley fever, tick‐borne encephalitis and West Nile fever. ‘Disease X' was not assessed in the same way as other zoonotic diseases on the list, but it was added to the final list of priorities due to its relevance and importance in the One Health context.
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- 2023
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36. Preclinical research performed on reanimated/perfused swine kidneys: The Visible Kidney™ methodologies
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Thomas F. Valenzuela, Emma Schinstock, Samantha Kohnle, Azeem Latib, Dimitrios Bliagos, Stefan Tunev, and Paul A. Iaizzo
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benchtop ,isolated ,kidney ,renal ,Physiology ,QP1-981 - Abstract
Abstract Preclinical research remains the essential platform in the development and optimization of medical therapies and advancements in translational medicines. However, specifically to animal research, federal laws, and institutional policies require investigators to apply the principles of the 3R's (replacement, reduction, and refinement). The concept of benchtop models utilizing isolated organs, in which multiple variables can be controlled to recreate human function, has been innovative advancements in preclinical research models that adhere to these principles. More specifically, isolated perfused kidney (IPK) models have been invaluable preclinical tools that have led to numerous advancements over the decades, including understanding renal physiology, pharmacologic therapies, and improvements in renal transplantation. However, pre‐existing IPK models are not without their own limitations, leaving areas for improvement. An isolated perfused kidney apparatus was designed to best recreate human use conditions as a preclinical tool. Porcine renal blocks were chosen over the more commonly used rodent models, due to their greater similarities to human anatomies. Sixteen porcine kidney pairs obtained en bloc were extracted and placed onto an apparatus where aortic flows, pressures, and overall systemic temperatures were controlled. Organ viability was assessed in 10 renal blocks (n = 8 fresh and n = 2 previously frozen specimens) via both urinary flows and compositions at timepoints up to 180 min. Multimodality imaging, which included fluoroscopy, ultrasound, optical coherence tomography (OCT), and video scopes, was also employed to capture internal and external images to determine renal artery orientations and dimensions. Anatomical measurements and viability assessments of porcine renal blocks were successfully achieved in our perfusion model. Renal main artery diameters averaged smaller in our sample size than in human anatomy while also having more superior takeoff angles. Yet, the average lengths of each main segment were comparable to human anatomy: 32.09 ± 7.97 mm and 42.23 ± 7.33 mm in the left and right renal main artery, respectively. Urine production and urine composition of the fresh renal blocks, when compared to the frozen blocks and baseline perfusate, showed kidney viabilities of up to 3 h via excretion and retention of various metabolites. In this paper, we described a protocol for an isolated perfused kidney apparatus using large mammalian renal blocks. We believe this protocol to be an improvement from similar pre‐existing models in better representing human physiologic function while allowing for multimodal imaging. The resulting Visible Kidney™ preclinical model, which has shown viability after isolation and reperfusion, can be a fast and reliable tool for the development of medical devices while also reducing the unnecessary use of animals for research.
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- 2023
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37. Interactive simulations for quantum key distribution
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Kohnle, Antje and Rizzoli, Aluna
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Physics - Physics Education ,Quantum Physics - Abstract
Secure communication protocols are becoming increasingly important, e.g. for internet-based communication. Quantum key distribution allows two parties, commonly called Alice and Bob, to generate a secret sequence of 0s and 1s called a key that is only known to themselves. Classically, Alice and Bob could never be certain that their communication was not compromised by a malicious eavesdropper. Quantum mechanics however makes secure communication possible. The fundamental principle of quantum mechanics that taking a measurement perturbs the system (unless the measurement is compatible with the quantum state) also applies to an eavesdropper. Using appropriate protocols to create the key, Alice and Bob can detect the presence of an eavesdropper by errors in their measurements. As part of the QuVis Quantum Mechanics Visualization Project, we have developed a suite of four interactive simulations that demonstrate the basic principles of three different quantum key distribution protocols. The simulations use either polarized photons or spin 1/2 particles as physical realizations. The simulations and accompanying activities are freely available for use online or download, and run on a wide range of devices including tablets and PCs. Evaluation with students over three years was used to refine the simulations and activities. Preliminary studies show that the refined simulations and activities help students learn the basic principles of QKD at both the introductory and advanced undergraduate levels., Comment: 21 pages, 4 figures, 2 tables, submitted to the American Journal of Physics
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- 2016
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38. Die Crucigers: Caspar der Ältere, Caspar der Jüngere und Elisabeth Cruciger in ihrer Bedeutung für die Wittenberger Reformation
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Armin Kohnle, Irene Dingel, Armin Kohnle, Irene Dingel
- Published
- 2021
39. Annual report on surveillance for avian influenza in poultry and wild birds in Member States of the European Union in 2021
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European Food Safety Authority (EFSA), Inma Aznar, Francesca Baldinelli, Anca Stoicescu, and Lisa Kohnle
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avian influenza ,HPAI ,LPAI ,surveillance ,poultry ,wild birds ,Nutrition. Foods and food supply ,TX341-641 ,Chemical technology ,TP1-1185 - Abstract
Abstract European Union (EU) Member States (MSs) are required to carry out surveillance for avian influenza (AI) in poultry and wild birds and notify the results to the responsible authority. In addition, Iceland, Norway, Switzerland and the United Kingdom (Northern Ireland) also implement ongoing surveillance programmes to monitor incursions of avian influenza viruses (AIVs) in poultry and wild birds. EFSA received a mandate from the European Commission to collate, validate, analyse and summarise the data resulting from these AI surveillance programmes in an annual report. The present report summarises the results of the surveillance activities carried out in MSs and the aforementioned countries in 2021. Overall, 24,290 poultry establishments (PEs) were sampled, of which 27 were seropositive for influenza A(H5) and 4 for A(H7) viruses. Seropositive PEs were found in 10 MSs and, as per previous years, the highest percentages of seropositive PEs were found in establishments raising waterfowl game birds and breeding geese. Out of these 31 seropositive PEs, 3 tested positive by polymerase chain reaction (PCR) for influenza A(H5) viruses: 1 for highly pathogenic avian influenza virus (HPAIV), 1 for low pathogenic avian influenza virus (LPAIV) and 1 with unknown virus pathogenicity. In addition, 16 countries reported PCR test results from 1,858 PEs which did not correspond to the follow‐up testing of a positive serology event (e.g. in some PEs, PCR tests were used for screening). Sixty‐five of these PEs in 10 MSs were found positive for AIVs. Apart from poultry, 31,382 wild birds were sampled, with 2,314 wild birds testing positive for HPAIVs by PCR. Twenty‐two countries reported HPAIV‐positive wild birds and most positive samples were identified as highly pathogenic avian influenza (HPAI) A(H5N8) virus. In addition, 328 wild birds tested positive for LPAIVs of the A(H5/H7) subtypes and 362 wild birds tested positive for non‐A(H5/H7) subtype AIVs.
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- 2022
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40. Investigating student understanding of quantum entanglement
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Kohnle, Antje and Deffebach, Erica
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Physics - Physics Education - Abstract
Quantum entanglement is a central concept of quantum theory for multiple particles. Entanglement played an important role in the development of the foundations of the theory and makes possible modern applications in quantum information technology. As part of the QuVis Quantum Mechanics Visualization Project, we developed an interactive simulation "Entanglement: The nature of quantum correlations" using two-particle entangled spin states. We investigated student understanding of entanglement at the introductory and advanced undergraduate levels by collecting student activity and post-test responses using two versions of the simulation and carrying out a small number of student interviews. Common incorrect ideas found include statements that all entangled states must be maximally entangled (i.e. show perfect correlations or anticorrelations along all common measurement axes), that the spins of particles in a product state must have definite values (cannot be in a superposition state with respect to spin) and difficulty factorizing product states. Outcomes from this work will inform further development of the QuVis Entanglement simulation., Comment: 4 pages, 3 figures; accepted for publication in the 2015 Physics Education Research Conference (PERC) proceedings
- Published
- 2015
41. 2D Fourier Transform Spectroscopy of exciton-polaritons and their interactions
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Takemura, N., Trebaol, S., Anderson, M. D., Kohnle, V., Léger, Y., Oberli, D. Y., Portella-Oberli, M. T., and Deveaud, B.
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Condensed Matter - Mesoscale and Nanoscale Physics - Abstract
We investigate polariton-polariton interactions in a semiconductor microcavity through two-dimensional Fourier transform (2DFT) spectroscopy. We observe, in addition to the lower-lower and the upper-upper polariton self-interaction, a lower-upper cross-interaction. This appears as separated peaks in the on-diagonal and off-diagonal part of 2DFT spectra. Moreover, we elucidate the role of the polariton dispersion through a fine structure in the 2DFT spectrum. Simulations, based on lower-upper polariton basis Gross-Pitaevskii equations including both self and cross-interactions, result in a 2DFT spectra in qualitative agreement with experiments.
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- 2015
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42. Enhancing student learning of two-level quantum systems with interactive simulations
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Kohnle, Antje, Baily, Charles, Campbell, Anna, Korolkova, Natalia, and Paetkau, Mark J.
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Physics - Physics Education - Abstract
The QuVis Quantum Mechanics Visualization project aims to address challenges of quantum mechanics instruction through the development of interactive simulations for the learning and teaching of quantum mechanics. In this article, we describe evaluation of simulations focusing on two-level systems developed as part of the Institute of Physics Quantum Physics resources. Simulations are research-based and have been iteratively refined using student feedback in individual observation sessions and in-class trials. We give evidence that these simulations are helping students learn quantum mechanics concepts at both the introductory and advanced undergraduate level, and that students perceive simulations to be beneficial to their learning., Comment: 15 pages, 5 figures, 1 table; accepted for publication in the American Journal of Physics
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- 2015
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43. Enhancing Student Visual Understanding of the Time Evolution of Quantum Systems
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Passante, Gina and Kohnle, Antje
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Time dependence is of fundamental importance for the description of quantum systems, but is particularly difficult for students to master. We describe the development and evaluation of a combined simulation-tutorial to support the development of visual understanding of time dependence in quantum mechanics. The associated interactive simulation shows the time dependence of an energy eigenstate and a superposition state, and how the time dependence of the probability density arises from that of the wave function. In order to assess transitions in student thinking, we developed a framework to characterize student responses in terms of real and complex mathematical reasoning and classical and quantum visual reasoning. The results of pre-, mid-, and post-tests indicate that the simulation-tutorial supports the development of visual understanding of time dependence, and that visual reasoning is correlated with improved student performance on a question relating to the time evolution of the wave function and the probability density. The results also indicate that the analogy of a classical standing wave for the infinite well energy eigenfunctions may be problematic in cueing incorrect ideas of time dependence.
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- 2019
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44. Avian influenza overview March–June 2024.
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Alexakis, Leonidas, Fusaro, Alice, Kuiken, Thijs, Mirinavičiūtė, Gražina, Ståhl, Karl, Staubach, Christoph, Svartström, Olov, Terregino, Calogero, Willgert, Katriina, Delacourt, Roxane, Goudjihounde, Sonagnon Martin, Grant, Malin, Tampach, Stefania, and Kohnle, Lisa
- Subjects
AVIAN influenza A virus ,ANIMAL herds ,AVIAN influenza ,VIRUS diseases ,DAIRY cattle ,POULTRY farms - Abstract
Between 16 March and 14 June 2024, 42 highly pathogenic avian influenza (HPAI) A(H5) virus detections were reported in domestic (15) and wild (27) birds across 13 countries in Europe. Although the overall number of detections in Europe has not been this low since the 2019–2020 epidemiological year, HPAI viruses continue to circulate at a very low level. Most detections in poultry were due to indirect contact with wild birds, but there was also secondary spread. Outside Europe, the HPAI situation intensified particularly in the USA, where a new A(H5N1) virus genotype (B3.13) has been identified in >130 dairy herds in 12 states. Infection in cattle appears to be centred on the udder, with milk from infected animals showing high viral loads and representing a new vehicle of transmission. Apart from cattle, HPAI viruses were identified in two other mammal species (alpaca and walrus) for the first time. Between 13 March and 20 June 2024, 14 new human cases with avian influenza virus infection were reported from Vietnam (one A(H5N1), one A(H9N2)), Australia (with travel history to India, one A(H5N1)), USA (three A(H5N1)), China (two A(H5N6), three A(H9N2), one A(H10N3)), India (one A(H9N2)), and Mexico (one fatal A(H5N2) case). The latter case was the first laboratory‐confirmed human infection with avian influenza virus subtype A(H5N2). Most of the human cases had reported exposure to poultry, live poultry markets, or dairy cattle prior to avian influenza virus detection or onset of illness. Human infections with avian influenza viruses remain rare and no human‐to‐human transmission has been observed. The risk of infection with currently circulating avian A(H5) influenza viruses of clade 2.3.4.4b in Europe remains low for the general public in the EU/EEA. The risk of infection remains low‐to‐moderate for those occupationally or otherwise exposed to infected animals or contaminated environments. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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45. Assessment of listing and categorisation of animal diseases within the framework of the Animal Health Law (Regulation (EU) No 2016/429): antimicrobial‐resistant Escherichia coli in dogs and cats, horses, swine, poultry, cattle, sheep and goats
- Author
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EFSA Panel on Animal Health and Welfare (AHAW), Søren Saxmose Nielsen, Dominique Joseph Bicout, Paolo Calistri, Elisabetta Canali, Julian Ashley Drewe, Bruno Garin‐Bastuji, José Luis Gonzales Rojas, Christian Gortázar, Mette Herskin, Virginie Michel, Miguel Ángel Miranda Chueca, Barbara Padalino, Paolo Pasquali, Helen Clare Roberts, Hans Spoolder, Karl Ståhl, Antonio Velarde, Arvo Viltrop, Christoph Winckler, Francesca Baldinelli, Alessandro Broglia, Lisa Kohnle, and Julio Alvarez
- Subjects
antimicrobial resistance ,Escherichia coli ,Animal Health Law ,listing ,categorisation ,impact ,Nutrition. Foods and food supply ,TX341-641 ,Chemical technology ,TP1-1185 - Abstract
Abstract Escherichia coli (E. coli) was identified among the most relevant antimicrobial‐resistant (AMR) bacteria in the EU for dogs and cats, horses, swine, poultry, cattle, sheep and goats in previous scientific opinions. Thus, it has been assessed according to the criteria of the Animal Health Law (AHL), in particular criteria of Article 7 on disease profile and impacts, Article 5 on its eligibility to be listed, Annex IV for its categorisation according to disease prevention and control rules as in Article 9 and Article 8 for listing animal species related to the bacterium. The assessment has been performed following a methodology previously published. The outcome is the median of the probability ranges provided by the experts, which indicates whether each criterion is fulfilled (lower bound ≥ 66%) or not (upper bound ≤ 33%), or whether there is uncertainty about fulfilment. Reasoning points are reported for criteria with uncertain outcome. According to the assessment here performed, it is uncertain whether AMR E. coli can be considered eligible to be listed for Union intervention according to Article 5 of the AHL (33–66% probability). According to the criteria in Annex IV, for the purpose of categorisation related to the level of prevention and control as in Article 9 of the AHL, the AHAW Panel concluded that the bacterium does not meet the criteria in Sections 1, 2, 3 and 4 (Categories A, B, C and D; 0–5%, 5–10%, 10–33% and 10–33% probability of meeting the criteria, respectively) and the AHAW Panel was uncertain whether it meets the criteria in Section 5 (Category E, 33–66% probability of meeting the criteria). The animal species to be listed for AMR E. coli according to Article 8 criteria include mammals, birds, reptiles and fish.
- Published
- 2022
- Full Text
- View/download PDF
46. Assessment of listing and categorisation of animal diseases within the framework of the Animal Health Law (Regulation (EU) No 2016/429): antimicrobial‐resistant Staphylococcus aureus in cattle and horses
- Author
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EFSA Panel on Animal Health and Welfare (AHAW), Søren Saxmose Nielsen, Dominique Joseph Bicout, Paolo Calistri, Elisabetta Canali, Julian Ashley Drewe, Bruno Garin‐Bastuji, José Luis Gonzales Rojas, Christian Gortázar, Mette Herskin, Virginie Michel, Miguel Ángel Miranda Chueca, Barbara Padalino, Paolo Pasquali, Helen Clare Roberts, Hans Spoolder, Karl Ståhl, Antonio Velarde, Arvo Viltrop, Christoph Winckler, Francesca Baldinelli, Alessandro Broglia, Lisa Kohnle, and Julio Alvarez
- Subjects
antimicrobial resistance ,Staphylococcus aureus ,Animal Health Law ,listing ,categorisation ,impact ,Nutrition. Foods and food supply ,TX341-641 ,Chemical technology ,TP1-1185 - Abstract
Abstract Staphylococcus aureus (S. aureus) was identified among the most relevant antimicrobial‐resistant (AMR) bacteria in the EU for cattle and horses in previous scientific opinions. Thus, it has been assessed according to the criteria of the Animal Health Law (AHL), in particular criteria of Article 7 on disease profile and impacts, Article 5 on its eligibility to be listed, Annex IV for its categorisation according to disease prevention and control rules as in Article 9, and Article 8 for listing animal species related to the bacterium. The assessment has been performed following a methodology previously published. The outcome is the median of the probability ranges provided by the experts, which indicates whether each criterion is fulfilled (lower bound ≥ 66%) or not (upper bound ≤ 33%), or whether there is uncertainty about fulfilment. Reasoning points are reported for criteria with uncertain outcome. According to the assessment here performed, it is uncertain whether AMR S. aureus can be considered eligible to be listed for Union intervention according to Article 5 of the AHL (60–90% probability). According to the criteria in Annex IV, for the purpose of categorisation related to the level of prevention and control as in Article 9 of the AHL, the AHAW Panel concluded that the bacterium does not meet the criteria in Sections 1, 2 and 4 (Categories A, B and D; 1–5%, 5–10% and 10–33% probability of meeting the criteria, respectively) and the AHAW Panel was uncertain whether it meets the criteria in Sections 3 and 5 (Categories C and E, 33–90% and 60–90% probability of meeting the criteria, respectively). The animal species to be listed for AMR S. aureus according to Article 8 criteria include mainly mammals, birds, reptiles and fish.
- Published
- 2022
- Full Text
- View/download PDF
47. Assessment of listing and categorisation of animal diseases within the framework of the Animal Health Law (Regulation (EU) No 2016/429): antimicrobial‐resistant Pseudomonas aeruginosa in dogs and cats
- Author
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EFSA Panel on Animal Health and Welfare (AHAW), Søren Saxmose Nielsen, Dominique Joseph Bicout, Paolo Calistri, Elisabetta Canali, Julian Ashley Drewe, Bruno Garin‐Bastuji, José Luis Gonzales Rojas, Christian Gortázar, Mette Herskin, Virginie Michel, Miguel Ángel Miranda Chueca, Barbara Padalino, Paolo Pasquali, Helen Clare Roberts, Hans Spoolder, Karl Ståhl, Antonio Velarde, Arvo Viltrop, Christoph Winckler, Francesca Baldinelli, Alessandro Broglia, Lisa Kohnle, and Julio Alvarez
- Subjects
antimicrobial resistance ,Pseudomonas aeruginosa ,Animal Health Law ,listing ,categorisation ,impact ,Nutrition. Foods and food supply ,TX341-641 ,Chemical technology ,TP1-1185 - Abstract
Abstract Pseudomonas aeruginosa (P. aeruginosa) was identified among the most relevant antimicrobial‐resistant (AMR) bacteria in the EU for dogs and cats in a previous scientific opinion. Thus, it has been assessed according to the criteria of the Animal Health Law (AHL), in particular criteria of Article 7 on disease profile and impacts, Article 5 on its eligibility to be listed, Annex IV for its categorisation according to disease prevention and control rules as in Article 9, and Article 8 for listing animal species related to the bacterium. The assessment has been performed following a methodology previously published. The outcome is the median of the probability ranges provided by the experts, which indicates whether each criterion is fulfilled (lower bound ≥ 66%) or not (upper bound ≤ 33%), or whether there is uncertainty about fulfilment. Reasoning points are reported for criteria with uncertain outcome. According to the assessment here performed, it is uncertain whether AMR P. aeruginosa can be considered eligible to be listed for Union intervention according to Article 5 of the AHL (33–90% probability). According to the criteria in Annex IV, for the purpose of categorisation related to the level of prevention and control as in Article 9 of the AHL, the AHAW Panel concluded that the bacterium does not meet the criteria in Sections 1, 2, 3 and 4 (Categories A, B, C and D; 0–5%, 1–5%, 5–33% and 5–33% probability of meeting the criteria, respectively) and the AHAW Panel was uncertain whether it meets the criteria in Section 5 (Category E, 33–90% probability of meeting the criteria). The animal species to be listed for AMR P. aeruginosa according to Article 8 criteria are mainly dogs and cats.
- Published
- 2022
- Full Text
- View/download PDF
48. Clinical impact, diagnosis and control of Equine Herpesvirus‐1 infection in Europe
- Author
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European Food Safety Authority (EFSA), Andrea Carvelli, Søren Saxmose Nielsen, Romain Paillot, Alessandro Broglia, and Lisa Kohnle
- Subjects
Equine herpesvirus‐1 infection ,horse ,Equidae ,latent infection ,PCR ,diagnosis ,Nutrition. Foods and food supply ,TX341-641 ,Chemical technology ,TP1-1185 - Abstract
Abstract Equine herpesvirus‐1 (EHV‐1) can affect the entire equine sector in EU, and the large outbreak reported in 2021 in Spain drew attention to the needs of the European Commission for scientific advice for the assessment of EHV‐1 infection within the framework of Animal Health Law. EHV‐1 is considered endemic in the EU; its main risk is linked to the characteristic of producing latent life‐long infections. These can reactivate producing clinical disease, which can include respiratory, abortive and possibly fatal neurological forms. From the epidemiological and genomic viewpoint, there are no specific neuropathogenic EHV‐1 strains; the respiratory, reproductive and neurological signs are not found to be strain‐specific. This was also the case of the virus that caused the outbreak in Valencia (Spain) in 2021, which was genetically closely related to other viruses circulating before in Europe, and did not present the so‐called neuropathogenic genotype. The outbreak reported in Valencia was followed by wide geographic spread of the virus possibly due to a delay in diagnosis and late application of biosecurity measures. The recommended and most sensitive diagnostic test for detecting EHV‐1 is PCR performed on swabs collected according to the type of clinical signs. Serological assays on paired blood samples can help to detect a recent infection, while no diagnostic methods are available to detect EHV‐1 latent infections. Safe movements of horses can be ensured at premovement phase by testing and issuing health certificates, and by isolating animals upon arrival at new premises with regular health monitoring. In case of suspicion, movements should be forbidden and EHV‐1 infection early detected/confirmed by validated diagnostic tools. During outbreaks, no movements should be allowed until 21 days after the detection of the last case. In general, vaccination against EHV‐1 should be promoted, although this offers limited protection against the neurological form of the disease.
- Published
- 2022
- Full Text
- View/download PDF
49. Field observations and experiences gained from the implementation of control measures against lumpy skin disease in South-East Europe between 2015 and 2017
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Tuppurainen, E.S.M., Antoniou, S-E., Tsiamadis, E., Topkaridou, M., Labus, T., Debeljak, Z., Plavšić, B., Miteva, A., Alexandrov, T., Pite, L., Boci, J., Marojevic, D., Kondratenko, V., Atanasov, Z., Murati, B., Acinger-Rogic, Z., Kohnle, L., Calistri, P., and Broglia, A.
- Published
- 2020
- Full Text
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50. 414.1: Long-term (>1 Year) Rejection/TMA Free Survival of Kidney Xenografts With Triple Xenoantigen Knockout and Multiple Human Transgenes in Nonhuman Primates
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Lassiter, Grace, Hirose, Takayuki, Ma, David, D’Attilio, Ashley, Rosales, Ivy, Matheson, Rudy, Cloonan, Daniel, Colvin, Robert B., Qin, Wenning, Kan, Yinan, Layer, Jacob, Anand, Ranjith, Paragas, Violette, Queroz, Luis, Tan, Xiaoqing, Kohnle, Ian, Stiede, Katherine, Hall, Katherine, Youd, Michele, Curtis, Michael, Markmann, James F., and Kawai, Tatsuo
- Published
- 2022
- Full Text
- View/download PDF
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