27 results on '"Kobilka TS"'
Search Results
2. Structural determinants of dual incretin receptor agonism by tirzepatide.
- Author
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Sun B, Willard FS, Feng D, Alsina-Fernandez J, Chen Q, Vieth M, Ho JD, Showalter AD, Stutsman C, Ding L, Suter TM, Dunbar JD, Carpenter JW, Mohammed FA, Aihara E, Brown RA, Bueno AB, Emmerson PJ, Moyers JS, Kobilka TS, Coghlan MP, Kobilka BK, and Sloop KW
- Subjects
- Gastric Inhibitory Polypeptide metabolism, Gastric Inhibitory Polypeptide pharmacology, Gastric Inhibitory Polypeptide therapeutic use, Glucagon-Like Peptide-1 Receptor metabolism, Humans, Incretins pharmacology, Tirzepatide, Diabetes Mellitus, Type 2 drug therapy, Diabetes Mellitus, Type 2 metabolism, Receptors, Gastrointestinal Hormone agonists, Receptors, Gastrointestinal Hormone metabolism, Receptors, Gastrointestinal Hormone therapeutic use
- Abstract
SignificanceTirzepatide is a dual agonist of the glucose-dependent insulinotropic polypeptide receptor (GIPR) and the glucagon-like peptide-1 receptor (GLP-1R), which are incretin receptors that regulate carbohydrate metabolism. This investigational agent has proven superior to selective GLP-1R agonists in clinical trials in subjects with type 2 diabetes mellitus. Intriguingly, although tirzepatide closely resembles native GIP in how it activates the GIPR, it differs markedly from GLP-1 in its activation of the GLP-1R, resulting in less agonist-induced receptor desensitization. We report how cryogenic electron microscopy and molecular dynamics simulations inform the structural basis for the unique pharmacology of tirzepatide. These studies reveal the extent to which fatty acid modification, combined with amino acid sequence, determines the mode of action of a multireceptor agonist.
- Published
- 2022
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3. Crystal structure of dopamine D1 receptor in complex with G protein and a non-catechol agonist.
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Sun B, Feng D, Chu ML, Fish I, Lovera S, Sands ZA, Kelm S, Valade A, Wood M, Ceska T, Kobilka TS, Lebon F, and Kobilka BK
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- Binding Sites, Crystallography, X-Ray, Humans, In Vitro Techniques, Ligands, Models, Molecular, Molecular Dynamics Simulation, Protein Binding, Protein Conformation, Protein Engineering, Protein Structure, Quaternary, Recombinant Proteins chemistry, GTP-Binding Protein alpha Subunits, Gs chemistry, Receptors, Dopamine D1 agonists, Receptors, Dopamine D1 chemistry
- Abstract
Dopamine D1 receptor (D1R) is an important drug target implicated in many psychiatric and neurological disorders. Selective agonism of D1R are sought to be the therapeutic strategy for these disorders. Most selective D1R agonists share a dopamine-like catechol moiety in their molecular structure, and their therapeutic potential is therefore limited by poor pharmacological properties in vivo. Recently, a class of non-catechol D1R selective agonists with a distinct scaffold and pharmacological properties were reported. Here, we report the crystal structure of D1R in complex with stimulatory G protein (Gs) and a non-catechol agonist Compound 1 at 3.8 Å resolution. The structure reveals the ligand bound to D1R in an extended conformation, spanning from the orthosteric site to extracellular loop 2 (ECL2). Structural analysis reveals that the unique features of D1R ligand binding pocket explains the remarkable selectivity of this scaffold for D1R over other aminergic receptors, and sheds light on the mechanism for D1R activation by the non-catechol agonist.
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- 2021
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4. Structural basis for GLP-1 receptor activation by LY3502970, an orally active nonpeptide agonist.
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Kawai T, Sun B, Yoshino H, Feng D, Suzuki Y, Fukazawa M, Nagao S, Wainscott DB, Showalter AD, Droz BA, Kobilka TS, Coghlan MP, Willard FS, Kawabe Y, Kobilka BK, and Sloop KW
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- Administration, Oral, Aminopyridines pharmacology, Animals, Anti-Obesity Agents pharmacology, Benzamides pharmacology, Cryoelectron Microscopy, Glucagon-Like Peptide-1 Receptor genetics, Glucagon-Like Peptide-1 Receptor metabolism, Glucagon-Like Peptide-1 Receptor ultrastructure, HEK293 Cells, Humans, Incretins pharmacology, Macaca fascicularis, Male, Mice, Mice, Transgenic, Models, Molecular, Mutagenesis, Site-Directed, Rats, Species Specificity, Swine, Tryptophan genetics, Hypoglycemic Agents pharmacology, Protein Domains genetics, Glucagon-Like Peptide-1 Receptor Agonists
- Abstract
Glucagon-like peptide-1 receptor (GLP-1R) agonists are efficacious antidiabetic medications that work by enhancing glucose-dependent insulin secretion and improving energy balance. Currently approved GLP-1R agonists are peptide based, and it has proven difficult to obtain small-molecule activators possessing optimal pharmaceutical properties. We report the discovery and mechanism of action of LY3502970 (OWL833), a nonpeptide GLP-1R agonist. LY3502970 is a partial agonist, biased toward G protein activation over β-arrestin recruitment at the GLP-1R. The molecule is highly potent and selective against other class B G protein-coupled receptors (GPCRs) with a pharmacokinetic profile favorable for oral administration. A high-resolution structure of LY3502970 in complex with active-state GLP-1R revealed a unique binding pocket in the upper helical bundle where the compound is bound by the extracellular domain (ECD), extracellular loop 2, and transmembrane helices 1, 2, 3, and 7. This mechanism creates a distinct receptor conformation that may explain the partial agonism and biased signaling of the compound. Further, interaction between LY3502970 and the primate-specific Trp33 of the ECD informs species selective activity for the molecule. In efficacy studies, oral administration of LY3502970 resulted in glucose lowering in humanized GLP-1R transgenic mice and insulinotropic and hypophagic effects in nonhuman primates, demonstrating an effect size in both models comparable to injectable exenatide. Together, this work determined the molecular basis for the activity of an oral agent being developed for the treatment of type 2 diabetes mellitus, offering insights into the activation of class B GPCRs by nonpeptide ligands., Competing Interests: Competing interest statement: D.B.W., A.D.S., B.A.D., M.P.C., F.S.W., and K.W.S. may own Eli Lilly and Company stock. T.S.K. is cofounder and president of ConfometRx. B.K.K. is a cofounder of and consultant for ConfometRx., (Copyright © 2020 the Author(s). Published by PNAS.)
- Published
- 2020
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5. Structural insights into probe-dependent positive allosterism of the GLP-1 receptor.
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Bueno AB, Sun B, Willard FS, Feng D, Ho JD, Wainscott DB, Showalter AD, Vieth M, Chen Q, Stutsman C, Chau B, Ficorilli J, Agejas FJ, Cumming GR, Jiménez A, Rojo I, Kobilka TS, Kobilka BK, and Sloop KW
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- Allosteric Site, Glucagon-Like Peptide 1 analogs & derivatives, Glucagon-Like Peptide-1 Receptor chemistry, Models, Molecular, Molecular Structure, Protein Conformation, Allosteric Regulation drug effects, Glucagon-Like Peptide-1 Receptor metabolism
- Abstract
Drugs that promote the association of protein complexes are an emerging therapeutic strategy. We report discovery of a G protein-coupled receptor (GPCR) ligand that stabilizes an active state conformation by cooperatively binding both the receptor and orthosteric ligand, thereby acting as a 'molecular glue'. LSN3160440 is a positive allosteric modulator of the GLP-1R optimized to increase the affinity and efficacy of GLP-1(9-36), a proteolytic product of GLP-1(7-36). The compound enhances insulin secretion in a glucose-, ligand- and GLP-1R-dependent manner. Cryo-electron microscopy determined the structure of the GLP-1R bound to LSN3160440 in complex with GLP-1 and heterotrimeric G
s . The modulator binds high in the helical bundle at an interface between TM1 and TM2, allowing access to the peptide ligand. Pharmacological characterization showed strong probe dependence of LSN3160440 for GLP-1(9-36) versus oxyntomodulin that is driven by a single residue. Our findings expand protein-protein modulation drug discovery to uncompetitive, active state stabilizers for peptide hormone receptors.- Published
- 2020
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6. Author Correction: Structural insights into the activation of metabotropic glutamate receptors.
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Koehl A, Hu H, Feng D, Sun B, Zhang Y, Robertson MJ, Chu M, Kobilka TS, Laeremans T, Steyaert J, Tarrasch J, Dutta S, Fonseca R, Weis WI, Mathiesen JM, Skiniotis G, and Kobilka BK
- Abstract
The surname of author Toon Laeremans was misspelled 'Laermans'. This error has been corrected online.
- Published
- 2019
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7. Structural insights into the activation of metabotropic glutamate receptors.
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Koehl A, Hu H, Feng D, Sun B, Zhang Y, Robertson MJ, Chu M, Kobilka TS, Laeremans T, Steyaert J, Tarrasch J, Dutta S, Fonseca R, Weis WI, Mathiesen JM, Skiniotis G, and Kobilka BK
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- Allosteric Regulation, Cryoelectron Microscopy, Crystallography, X-Ray, Cysteine chemistry, Cysteine metabolism, Humans, Ligands, Models, Molecular, Protein Domains, Protein Stability, Receptor, Metabotropic Glutamate 5 ultrastructure, Receptor, Metabotropic Glutamate 5 chemistry, Receptor, Metabotropic Glutamate 5 metabolism, Signal Transduction
- Abstract
Metabotropic glutamate receptors are family C G-protein-coupled receptors. They form obligate dimers and possess extracellular ligand-binding Venus flytrap domains, which are linked by cysteine-rich domains to their 7-transmembrane domains. Spectroscopic studies show that signalling is a dynamic process, in which large-scale conformational changes underlie the transmission of signals from the extracellular Venus flytraps to the G protein-coupling domains-the 7-transmembrane domains-in the membrane. Here, using a combination of X-ray crystallography, cryo-electron microscopy and signalling studies, we present a structural framework for the activation mechanism of metabotropic glutamate receptor subtype 5. Our results show that agonist binding at the Venus flytraps leads to a compaction of the intersubunit dimer interface, thereby bringing the cysteine-rich domains into close proximity. Interactions between the cysteine-rich domains and the second extracellular loops of the receptor enable the rigid-body repositioning of the 7-transmembrane domains, which come into contact with each other to initiate signalling.
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- 2019
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8. Crystal structure of the adenosine A 2A receptor bound to an antagonist reveals a potential allosteric pocket.
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Sun B, Bachhawat P, Chu ML, Wood M, Ceska T, Sands ZA, Mercier J, Lebon F, Kobilka TS, and Kobilka BK
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- Adenosine A2 Receptor Antagonists metabolism, Adenosine A2 Receptor Antagonists therapeutic use, Animals, Antiparkinson Agents chemistry, Antiparkinson Agents metabolism, Antiparkinson Agents therapeutic use, Crystallography, X-Ray, Humans, Ligands, Protein Structure, Tertiary, Receptor, Adenosine A2A metabolism, Receptors, N-Methyl-D-Aspartate antagonists & inhibitors, Receptors, N-Methyl-D-Aspartate metabolism, Sf9 Cells, Spodoptera, Triazines chemistry, Triazines metabolism, Triazoles chemistry, Triazoles metabolism, Tyrosine chemistry, Tyrosine metabolism, Adenosine A2 Receptor Antagonists chemistry, Allosteric Site, Parkinson Disease drug therapy, Receptor, Adenosine A2A chemistry
- Abstract
The adenosine A
2A receptor (A2A R) has long been implicated in cardiovascular disorders. As more selective A2A R ligands are being identified, its roles in other disorders, such as Parkinson's disease, are starting to emerge, and A2A R antagonists are important drug candidates for nondopaminergic anti-Parkinson treatment. Here we report the crystal structure of A2A receptor bound to compound 1 (Cmpd-1), a novel A2A R/ N -methyl d-aspartate receptor subtype 2B (NR2B) dual antagonist and potential anti-Parkinson candidate compound, at 3.5 Å resolution. The A2A receptor with a cytochrome b562-RIL (BRIL) fusion (A2A R-BRIL) in the intracellular loop 3 (ICL3) was crystallized in detergent micelles using vapor-phase diffusion. Whereas A2A R-BRIL bound to the antagonist ZM241385 has previously been crystallized in lipidic cubic phase (LCP), structural differences in the Cmpd-1-bound A2A R-BRIL prevented formation of the lattice observed with the ZM241385-bound receptor. The crystals grew with a type II crystal lattice in contrast to the typical type I packing seen from membrane protein structures crystallized in LCP. Cmpd-1 binds in a position that overlaps with the native ligand adenosine, but its methoxyphenyl group extends to an exosite not previously observed in other A2A R structures. Structural analysis revealed that Cmpd-1 binding results in the unique conformations of two tyrosine residues, Tyr91.35 and Tyr2717.36 , which are critical for the formation of the exosite. The structure reveals insights into antagonist binding that are not observed in other A2A R structures, highlighting flexibility in the binding pocket that may facilitate the development of A2A R-selective compounds for the treatment of Parkinson's disease.- Published
- 2017
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9. Crystal structures of the M1 and M4 muscarinic acetylcholine receptors.
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Thal DM, Sun B, Feng D, Nawaratne V, Leach K, Felder CC, Bures MG, Evans DA, Weis WI, Bachhawat P, Kobilka TS, Sexton PM, Kobilka BK, and Christopoulos A
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- Acetylcholine metabolism, Allosteric Regulation drug effects, Allosteric Site drug effects, Alzheimer Disease, Crystallization, Crystallography, X-Ray, Drug Inverse Agonism, Humans, Models, Molecular, Nicotinic Acids metabolism, Nicotinic Acids pharmacology, Receptor, Muscarinic M1 metabolism, Receptor, Muscarinic M4 metabolism, Schizophrenia, Static Electricity, Substrate Specificity, Surface Properties, Thiophenes metabolism, Thiophenes pharmacology, Tiotropium Bromide pharmacology, Receptor, Muscarinic M1 chemistry, Receptor, Muscarinic M4 chemistry
- Abstract
Muscarinic M1-M5 acetylcholine receptors are G-protein-coupled receptors that regulate many vital functions of the central and peripheral nervous systems. In particular, the M1 and M4 receptor subtypes have emerged as attractive drug targets for treatments of neurological disorders, such as Alzheimer's disease and schizophrenia, but the high conservation of the acetylcholine-binding pocket has spurred current research into targeting allosteric sites on these receptors. Here we report the crystal structures of the M1 and M4 muscarinic receptors bound to the inverse agonist, tiotropium. Comparison of these structures with each other, as well as with the previously reported M2 and M3 receptor structures, reveals differences in the orthosteric and allosteric binding sites that contribute to a role in drug selectivity at this important receptor family. We also report identification of a cluster of residues that form a network linking the orthosteric and allosteric sites of the M4 receptor, which provides new insight into how allosteric modulation may be transmitted between the two spatially distinct domains.
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- 2016
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10. Structural Insights into the Dynamic Process of β2-Adrenergic Receptor Signaling.
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Manglik A, Kim TH, Masureel M, Altenbach C, Yang Z, Hilger D, Lerch MT, Kobilka TS, Thian FS, Hubbell WL, Prosser RS, and Kobilka BK
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- Adrenergic beta-Agonists pharmacology, Amino Acid Sequence, Benzoxazines pharmacology, Humans, Isoproterenol metabolism, Isoproterenol pharmacology, Magnetic Resonance Spectroscopy, Models, Molecular, Molecular Sequence Data, Nuclear Magnetic Resonance, Biomolecular, Receptors, Adrenergic, beta-2 chemistry, Receptors, Adrenergic, beta-2 metabolism, Signal Transduction
- Abstract
G-protein-coupled receptors (GPCRs) transduce signals from the extracellular environment to intracellular proteins. To gain structural insight into the regulation of receptor cytoplasmic conformations by extracellular ligands during signaling, we examine the structural dynamics of the cytoplasmic domain of the β2-adrenergic receptor (β2AR) using (19)F-fluorine NMR and double electron-electron resonance spectroscopy. These studies show that unliganded and inverse-agonist-bound β2AR exists predominantly in two inactive conformations that exchange within hundreds of microseconds. Although agonists shift the equilibrium toward a conformation capable of engaging cytoplasmic G proteins, they do so incompletely, resulting in increased conformational heterogeneity and the coexistence of inactive, intermediate, and active states. Complete transition to the active conformation requires subsequent interaction with a G protein or an intracellular G protein mimetic. These studies demonstrate a loose allosteric coupling of the agonist-binding site and G-protein-coupling interface that may generally be responsible for the complex signaling behavior observed for many GPCRs., (Copyright © 2015 Elsevier Inc. All rights reserved.)
- Published
- 2015
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11. The dynamic process of β(2)-adrenergic receptor activation.
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Nygaard R, Zou Y, Dror RO, Mildorf TJ, Arlow DH, Manglik A, Pan AC, Liu CW, Fung JJ, Bokoch MP, Thian FS, Kobilka TS, Shaw DE, Mueller L, Prosser RS, and Kobilka BK
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- Adrenergic beta-2 Receptor Agonists metabolism, Amino Acid Sequence, Humans, Molecular Sequence Data, Protein Conformation, Signal Transduction, Thermodynamics, Molecular Dynamics Simulation, Nuclear Magnetic Resonance, Biomolecular, Receptors, Adrenergic, beta-2 chemistry, Receptors, Adrenergic, beta-2 metabolism
- Abstract
G-protein-coupled receptors (GPCRs) can modulate diverse signaling pathways, often in a ligand-specific manner. The full range of functionally relevant GPCR conformations is poorly understood. Here, we use NMR spectroscopy to characterize the conformational dynamics of the transmembrane core of the β(2)-adrenergic receptor (β(2)AR), a prototypical GPCR. We labeled β(2)AR with (13)CH(3)ε-methionine and obtained HSQC spectra of unliganded receptor as well as receptor bound to an inverse agonist, an agonist, and a G-protein-mimetic nanobody. These studies provide evidence for conformational states not observed in crystal structures, as well as substantial conformational heterogeneity in agonist- and inverse-agonist-bound preparations. They also show that for β(2)AR, unlike rhodopsin, an agonist alone does not stabilize a fully active conformation, suggesting that the conformational link between the agonist-binding pocket and the G-protein-coupling surface is not rigid. The observed heterogeneity may be important for β(2)AR's ability to engage multiple signaling and regulatory proteins., (Copyright © 2013 Elsevier Inc. All rights reserved.)
- Published
- 2013
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12. Structure of the δ-opioid receptor bound to naltrindole.
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Granier S, Manglik A, Kruse AC, Kobilka TS, Thian FS, Weis WI, and Kobilka BK
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- Amino Acid Sequence, Animals, Binding Sites, Conserved Sequence, Crystallography, X-Ray, Mice, Models, Molecular, Molecular Sequence Data, Naltrexone chemistry, Naltrexone metabolism, Naltrexone pharmacology, Protein Structure, Tertiary, Receptors, Opioid, delta antagonists & inhibitors, Receptors, Opioid, delta metabolism, Reproducibility of Results, Structure-Activity Relationship, Substrate Specificity, Naltrexone analogs & derivatives, Receptors, Opioid, delta chemistry
- Abstract
The opioid receptor family comprises three members, the µ-, δ- and κ-opioid receptors, which respond to classical opioid alkaloids such as morphine and heroin as well as to endogenous peptide ligands like endorphins. They belong to the G-protein-coupled receptor (GPCR) superfamily, and are excellent therapeutic targets for pain control. The δ-opioid receptor (δ-OR) has a role in analgesia, as well as in other neurological functions that remain poorly understood. The structures of the µ-OR and κ-OR have recently been solved. Here we report the crystal structure of the mouse δ-OR, bound to the subtype-selective antagonist naltrindole. Together with the structures of the µ-OR and κ-OR, the δ-OR structure provides insights into conserved elements of opioid ligand recognition while also revealing structural features associated with ligand-subtype selectivity. The binding pocket of opioid receptors can be divided into two distinct regions. Whereas the lower part of this pocket is highly conserved among opioid receptors, the upper part contains divergent residues that confer subtype selectivity. This provides a structural explanation and validation for the 'message-address' model of opioid receptor pharmacology, in which distinct 'message' (efficacy) and 'address' (selectivity) determinants are contained within a single ligand. Comparison of the address region of the δ-OR with other GPCRs reveals that this structural organization may be a more general phenomenon, extending to other GPCR families as well.
- Published
- 2012
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13. Crystal structure of the µ-opioid receptor bound to a morphinan antagonist.
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Manglik A, Kruse AC, Kobilka TS, Thian FS, Mathiesen JM, Sunahara RK, Pardo L, Weis WI, Kobilka BK, and Granier S
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- Animals, Binding Sites, Crystallography, X-Ray, Ligands, Mice, Models, Molecular, Morphinans metabolism, Morphinans pharmacology, Protein Conformation, Protein Multimerization, Receptors, Opioid, mu metabolism, Solvents chemistry, Morphinans chemistry, Receptors, Opioid, mu antagonists & inhibitors, Receptors, Opioid, mu chemistry
- Abstract
Opium is one of the world's oldest drugs, and its derivatives morphine and codeine are among the most used clinical drugs to relieve severe pain. These prototypical opioids produce analgesia as well as many undesirable side effects (sedation, apnoea and dependence) by binding to and activating the G-protein-coupled µ-opioid receptor (µ-OR) in the central nervous system. Here we describe the 2.8 Å crystal structure of the mouse µ-OR in complex with an irreversible morphinan antagonist. Compared to the buried binding pocket observed in most G-protein-coupled receptors published so far, the morphinan ligand binds deeply within a large solvent-exposed pocket. Of particular interest, the µ-OR crystallizes as a two-fold symmetrical dimer through a four-helix bundle motif formed by transmembrane segments 5 and 6. These high-resolution insights into opioid receptor structure will enable the application of structure-based approaches to develop better drugs for the management of pain and addiction.
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- 2012
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14. Crystal structure of the β2 adrenergic receptor-Gs protein complex.
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Rasmussen SG, DeVree BT, Zou Y, Kruse AC, Chung KY, Kobilka TS, Thian FS, Chae PS, Pardon E, Calinski D, Mathiesen JM, Shah ST, Lyons JA, Caffrey M, Gellman SH, Steyaert J, Skiniotis G, Weis WI, Sunahara RK, and Kobilka BK
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- Adrenergic beta-2 Receptor Agonists chemistry, Adrenergic beta-2 Receptor Agonists metabolism, Animals, Catalytic Domain, Cattle, Crystallization, Crystallography, X-Ray, Enzyme Activation, Models, Molecular, Multiprotein Complexes chemistry, Multiprotein Complexes metabolism, Protein Binding, Rats, GTP-Binding Protein alpha Subunits, Gs chemistry, GTP-Binding Protein alpha Subunits, Gs metabolism, Receptors, Adrenergic, beta-2 chemistry, Receptors, Adrenergic, beta-2 metabolism
- Abstract
G protein-coupled receptors (GPCRs) are responsible for the majority of cellular responses to hormones and neurotransmitters as well as the senses of sight, olfaction and taste. The paradigm of GPCR signalling is the activation of a heterotrimeric GTP binding protein (G protein) by an agonist-occupied receptor. The β(2) adrenergic receptor (β(2)AR) activation of Gs, the stimulatory G protein for adenylyl cyclase, has long been a model system for GPCR signalling. Here we present the crystal structure of the active state ternary complex composed of agonist-occupied monomeric β(2)AR and nucleotide-free Gs heterotrimer. The principal interactions between the β(2)AR and Gs involve the amino- and carboxy-terminal α-helices of Gs, with conformational changes propagating to the nucleotide-binding pocket. The largest conformational changes in the β(2)AR include a 14 Å outward movement at the cytoplasmic end of transmembrane segment 6 (TM6) and an α-helical extension of the cytoplasmic end of TM5. The most surprising observation is a major displacement of the α-helical domain of Gαs relative to the Ras-like GTPase domain. This crystal structure represents the first high-resolution view of transmembrane signalling by a GPCR., (© 2011 Macmillan Publishers Limited. All rights reserved)
- Published
- 2011
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15. Structure of a nanobody-stabilized active state of the β(2) adrenoceptor.
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Rasmussen SG, Choi HJ, Fung JJ, Pardon E, Casarosa P, Chae PS, Devree BT, Rosenbaum DM, Thian FS, Kobilka TS, Schnapp A, Konetzki I, Sunahara RK, Gellman SH, Pautsch A, Steyaert J, Weis WI, and Kobilka BK
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- Adrenergic beta-2 Receptor Agonists immunology, Adrenergic beta-2 Receptor Agonists metabolism, Animals, Binding Sites, Camelids, New World, Crystallography, X-Ray, Drug Inverse Agonism, Humans, Immunoglobulin Fragments metabolism, Immunoglobulin Fragments pharmacology, Ligands, Models, Molecular, Movement drug effects, Opsins agonists, Opsins chemistry, Opsins metabolism, Propanolamines chemistry, Propanolamines metabolism, Propanolamines pharmacology, Protein Conformation drug effects, Protein Stability drug effects, Viral Proteins chemistry, Viral Proteins metabolism, Adrenergic beta-2 Receptor Agonists chemistry, Adrenergic beta-2 Receptor Agonists pharmacology, Immunoglobulin Fragments chemistry, Immunoglobulin Fragments immunology, Nanostructures chemistry, Receptors, Adrenergic, beta-2 chemistry, Receptors, Adrenergic, beta-2 metabolism
- Abstract
G protein coupled receptors (GPCRs) exhibit a spectrum of functional behaviours in response to natural and synthetic ligands. Recent crystal structures provide insights into inactive states of several GPCRs. Efforts to obtain an agonist-bound active-state GPCR structure have proven difficult due to the inherent instability of this state in the absence of a G protein. We generated a camelid antibody fragment (nanobody) to the human β(2) adrenergic receptor (β(2)AR) that exhibits G protein-like behaviour, and obtained an agonist-bound, active-state crystal structure of the receptor-nanobody complex. Comparison with the inactive β(2)AR structure reveals subtle changes in the binding pocket; however, these small changes are associated with an 11 Å outward movement of the cytoplasmic end of transmembrane segment 6, and rearrangements of transmembrane segments 5 and 7 that are remarkably similar to those observed in opsin, an active form of rhodopsin. This structure provides insights into the process of agonist binding and activation.
- Published
- 2011
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16. Ligand-specific regulation of the extracellular surface of a G-protein-coupled receptor.
- Author
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Bokoch MP, Zou Y, Rasmussen SG, Liu CW, Nygaard R, Rosenbaum DM, Fung JJ, Choi HJ, Thian FS, Kobilka TS, Puglisi JD, Weis WI, Pardo L, Prosser RS, Mueller L, and Kobilka BK
- Subjects
- Adrenergic beta-2 Receptor Agonists, Adrenergic beta-2 Receptor Antagonists, Allosteric Regulation drug effects, Binding Sites, Crystallography, X-Ray, Drug Inverse Agonism, Ethanolamines pharmacology, Formoterol Fumarate, Humans, Ligands, Lysine analogs & derivatives, Lysine metabolism, Methylation, Models, Molecular, Mutant Proteins, Nuclear Magnetic Resonance, Biomolecular, Propanolamines metabolism, Propanolamines pharmacology, Protein Structure, Tertiary drug effects, Static Electricity, Substrate Specificity, Receptors, Adrenergic, beta-2 chemistry, Receptors, Adrenergic, beta-2 metabolism
- Abstract
G-protein-coupled receptors (GPCRs) are seven-transmembrane proteins that mediate most cellular responses to hormones and neurotransmitters. They are the largest group of therapeutic targets for a broad spectrum of diseases. Recent crystal structures of GPCRs have revealed structural conservation extending from the orthosteric ligand-binding site in the transmembrane core to the cytoplasmic G-protein-coupling domains. In contrast, the extracellular surface (ECS) of GPCRs is remarkably diverse and is therefore an ideal target for the discovery of subtype-selective drugs. However, little is known about the functional role of the ECS in receptor activation, or about conformational coupling of this surface to the native ligand-binding pocket. Here we use NMR spectroscopy to investigate ligand-specific conformational changes around a central structural feature in the ECS of the beta(2) adrenergic receptor: a salt bridge linking extracellular loops 2 and 3. Small-molecule drugs that bind within the transmembrane core and exhibit different efficacies towards G-protein activation (agonist, neutral antagonist and inverse agonist) also stabilize distinct conformations of the ECS. We thereby demonstrate conformational coupling between the ECS and the orthosteric binding site, showing that drugs targeting this diverse surface could function as allosteric modulators with high subtype selectivity. Moreover, these studies provide a new insight into the dynamic behaviour of GPCRs not addressable by static, inactive-state crystal structures.
- Published
- 2010
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17. GPCR engineering yields high-resolution structural insights into beta2-adrenergic receptor function.
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Rosenbaum DM, Cherezov V, Hanson MA, Rasmussen SG, Thian FS, Kobilka TS, Choi HJ, Yao XJ, Weis WI, Stevens RC, and Kobilka BK
- Subjects
- Adrenergic beta-Agonists chemistry, Adrenergic beta-Agonists metabolism, Adrenergic beta-Antagonists chemistry, Adrenergic beta-Antagonists metabolism, Amino Acid Sequence, Bacteriophage T4 enzymology, Binding Sites, Cell Line, Cell Membrane chemistry, Cell Membrane metabolism, Crystallization, Crystallography, X-Ray, Drug Inverse Agonism, Humans, Immunoglobulin Fab Fragments chemistry, Immunoglobulin Fab Fragments metabolism, Ligands, Models, Molecular, Molecular Sequence Data, Muramidase chemistry, Muramidase metabolism, Propanolamines chemistry, Propanolamines metabolism, Protein Conformation, Protein Structure, Secondary, Protein Structure, Tertiary, Recombinant Fusion Proteins chemistry, Recombinant Fusion Proteins metabolism, Receptors, Adrenergic, beta-2 chemistry, Receptors, Adrenergic, beta-2 metabolism
- Abstract
The beta2-adrenergic receptor (beta2AR) is a well-studied prototype for heterotrimeric guanine nucleotide-binding protein (G protein)-coupled receptors (GPCRs) that respond to diffusible hormones and neurotransmitters. To overcome the structural flexibility of the beta2AR and to facilitate its crystallization, we engineered a beta2AR fusion protein in which T4 lysozyme (T4L) replaces most of the third intracellular loop of the GPCR ("beta2AR-T4L") and showed that this protein retains near-native pharmacologic properties. Analysis of adrenergic receptor ligand-binding mutants within the context of the reported high-resolution structure of beta2AR-T4L provides insights into inverse-agonist binding and the structural changes required to accommodate catecholamine agonists. Amino acids known to regulate receptor function are linked through packing interactions and a network of hydrogen bonds, suggesting a conformational pathway from the ligand-binding pocket to regions that interact with G proteins.
- Published
- 2007
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18. High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor.
- Author
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Cherezov V, Rosenbaum DM, Hanson MA, Rasmussen SG, Thian FS, Kobilka TS, Choi HJ, Kuhn P, Weis WI, Kobilka BK, and Stevens RC
- Subjects
- Bacteriophage T4 enzymology, Binding Sites, Cell Membrane chemistry, Cell Membrane metabolism, Cholesterol chemistry, Cholesterol metabolism, Crystallization, Crystallography, X-Ray, Drug Inverse Agonism, Humans, Ligands, Models, Molecular, Muramidase chemistry, Muramidase metabolism, Propanolamines chemistry, Propanolamines metabolism, Protein Conformation, Protein Folding, Protein Structure, Secondary, Receptors, Adrenergic, beta-2 metabolism, Recombinant Fusion Proteins chemistry, Recombinant Fusion Proteins metabolism, Rhodopsin chemistry, Rhodopsin metabolism, Static Electricity, Receptors, Adrenergic, beta-2 chemistry
- Abstract
Heterotrimeric guanine nucleotide-binding protein (G protein)-coupled receptors constitute the largest family of eukaryotic signal transduction proteins that communicate across the membrane. We report the crystal structure of a human beta2-adrenergic receptor-T4 lysozyme fusion protein bound to the partial inverse agonist carazolol at 2.4 angstrom resolution. The structure provides a high-resolution view of a human G protein-coupled receptor bound to a diffusible ligand. Ligand-binding site accessibility is enabled by the second extracellular loop, which is held out of the binding cavity by a pair of closely spaced disulfide bridges and a short helical segment within the loop. Cholesterol, a necessary component for crystallization, mediates an intriguing parallel association of receptor molecules in the crystal lattice. Although the location of carazolol in the beta2-adrenergic receptor is very similar to that of retinal in rhodopsin, structural differences in the ligand-binding site and other regions highlight the challenges in using rhodopsin as a template model for this large receptor family.
- Published
- 2007
- Full Text
- View/download PDF
19. Crystal structure of the human beta2 adrenergic G-protein-coupled receptor.
- Author
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Rasmussen SG, Choi HJ, Rosenbaum DM, Kobilka TS, Thian FS, Edwards PC, Burghammer M, Ratnala VR, Sanishvili R, Fischetti RF, Schertler GF, Weis WI, and Kobilka BK
- Subjects
- Adrenergic beta-2 Receptor Antagonists, Animals, Cell Line, Crystallization, Crystallography, X-Ray, Drug Inverse Agonism, Humans, Immunoglobulin Fab Fragments chemistry, Immunoglobulin Fab Fragments metabolism, Leucine metabolism, Lipids chemistry, Models, Molecular, Protein Conformation, Receptors, Adrenergic, beta-2 metabolism, Rhodopsin chemistry, Rhodopsin metabolism, Spodoptera, Receptors, Adrenergic, beta-2 chemistry
- Abstract
Structural analysis of G-protein-coupled receptors (GPCRs) for hormones and neurotransmitters has been hindered by their low natural abundance, inherent structural flexibility, and instability in detergent solutions. Here we report a structure of the human beta2 adrenoceptor (beta2AR), which was crystallized in a lipid environment when bound to an inverse agonist and in complex with a Fab that binds to the third intracellular loop. Diffraction data were obtained by high-brilliance microcrystallography and the structure determined at 3.4 A/3.7 A resolution. The cytoplasmic ends of the beta2AR transmembrane segments and the connecting loops are well resolved, whereas the extracellular regions of the beta2AR are not seen. The beta2AR structure differs from rhodopsin in having weaker interactions between the cytoplasmic ends of transmembrane (TM)3 and TM6, involving the conserved E/DRY sequences. These differences may be responsible for the relatively high basal activity and structural instability of the beta2AR, and contribute to the challenges in obtaining diffraction-quality crystals of non-rhodopsin GPCRs.
- Published
- 2007
- Full Text
- View/download PDF
20. A monoclonal antibody for G protein-coupled receptor crystallography.
- Author
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Day PW, Rasmussen SG, Parnot C, Fung JJ, Masood A, Kobilka TS, Yao XJ, Choi HJ, Weis WI, Rohrer DK, and Kobilka BK
- Subjects
- Amino Acid Sequence, Animals, Antibodies, Monoclonal biosynthesis, Antigen-Antibody Reactions immunology, Blotting, Western, Crystallization methods, Crystallography, Epitopes chemistry, Epitopes immunology, Fluorescent Dyes chemistry, Humans, Immunoglobulin Fab Fragments chemistry, Immunoglobulin Fab Fragments immunology, Mice, Molecular Sequence Data, Protein Structure, Tertiary, Receptors, Adrenergic, beta-2 chemistry, Receptors, Adrenergic, beta-2 genetics, Receptors, G-Protein-Coupled chemistry, Receptors, G-Protein-Coupled genetics, Recombinant Proteins chemistry, Recombinant Proteins immunology, Rhodamines chemistry, Vaccination, Antibodies, Monoclonal immunology, Receptors, Adrenergic, beta-2 immunology, Receptors, G-Protein-Coupled immunology
- Abstract
G protein-coupled receptors (GPCRs) constitute the largest family of signaling proteins in mammals, mediating responses to hormones, neurotransmitters, and senses of sight, smell and taste. Mechanistic insight into GPCR signal transduction is limited by a paucity of high-resolution structural information. We describe the generation of a monoclonal antibody that recognizes the third intracellular loop (IL3) of the native human beta(2) adrenergic (beta(2)AR) receptor; this antibody was critical for acquiring diffraction-quality crystals.
- Published
- 2007
- Full Text
- View/download PDF
21. Probing the beta2 adrenoceptor binding site with catechol reveals differences in binding and activation by agonists and partial agonists.
- Author
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Swaminath G, Deupi X, Lee TW, Zhu W, Thian FS, Kobilka TS, and Kobilka B
- Subjects
- Albuterol chemistry, Animals, Binding Sites, Biochemical Phenomena, Biochemistry, Catecholamines chemistry, Humans, Insecta, Isoproterenol chemistry, Kinetics, Ligands, Lipids chemistry, Models, Biological, Models, Chemical, Models, Molecular, Protein Binding, Protein Conformation, Receptors, G-Protein-Coupled chemistry, Spectrometry, Fluorescence, Time Factors, Catechols chemistry, Receptors, Adrenergic, beta-2 chemistry
- Abstract
The beta(2) adrenergic receptor (beta(2)AR) is a prototypical family A G protein-coupled receptor (GPCR) and an excellent model system for studying the mechanism of GPCR activation. The beta(2)AR agonist binding site is well characterized, and there is a wealth of structurally related ligands with functionally diverse properties. In the present study, we use catechol (1,2-benzenediol, a structural component of catecholamine agonists) as a molecular probe to identify mechanistic differences between beta(2)AR activation by catecholamine agonists, such as isoproterenol, and by the structurally related non-catechol partial agonist salbutamol. Using biophysical and pharmacologic approaches, we show that the aromatic ring of salbutamol binds to a different site on the beta(2)AR than the aromatic ring of catecholamines. This difference is important in receptor activation as it has been hypothesized that the aromatic ring of catecholamines plays a role in triggering receptor activation through interactions with a conserved cluster of aromatic residues in the sixth transmembrane segment by a rotamer toggle switch mechanism. Our experiments indicate that the aromatic ring of salbutamol does not activate this mechanism either directly or indirectly. Moreover, the non-catechol ring of partial agonists does not interact optimally with serine residues in the fifth transmembrane helix that have been shown to play an important role in activation by catecholamines. These results demonstrate unexpected differences in binding and activation by structurally similar agonists and partial agonists. Moreover, they provide evidence that activation of a GPCR is a multistep process that can be dissected into its component parts using agonist fragments.
- Published
- 2005
- Full Text
- View/download PDF
22. Enhancement of membrane insertion and function in a type IIIb membrane protein following introduction of a cleavable signal peptide.
- Author
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Guan XM, Kobilka TS, and Kobilka BK
- Subjects
- Amino Acid Sequence, Base Sequence, Biological Transport, Cell-Free System, Dihydroalprenolol metabolism, Endoplasmic Reticulum metabolism, Gene Expression, Humans, In Vitro Techniques, Membrane Proteins chemistry, Molecular Sequence Data, Receptors, Adrenergic, beta chemistry, Recombinant Proteins metabolism, Structure-Activity Relationship, Membrane Proteins metabolism, Protein Sorting Signals physiology, Receptors, Adrenergic, beta metabolism
- Abstract
The human beta 2 adrenergic receptor is a type IIIb membrane protein. It has a putative seven-transmembrane topology but lacks an amino-terminal cleavable signal sequence. The mechanism by which the amino terminus of the beta 2 receptor is translocated across the endoplasmic reticulum membrane is unknown. Furthermore, it is not known if translocation as a type IIIb protein is essential for the proper folding. Our studies indicate that conversion of beta 2 receptor from a type IIIb to a type IIIa membrane protein by introducing an NH2-terminal cleavable signal sequence enhances translocation of the receptor into the endoplasmic reticulum membrane, thereby facilitating expression of functional receptor.
- Published
- 1992
23. Cloning and expression of a human kidney cDNA for an alpha 2-adrenergic receptor subtype.
- Author
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Regan JW, Kobilka TS, Yang-Feng TL, Caron MG, Lefkowitz RJ, and Kobilka BK
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Cell Line, Chromosomes, Human, Pair 4, Humans, Kinetics, Models, Molecular, Molecular Sequence Data, Protein Conformation, Receptors, Adrenergic, alpha metabolism, Transcription, Genetic, Cloning, Molecular, DNA genetics, Genes, Kidney metabolism, Receptors, Adrenergic, alpha genetics
- Abstract
An alpha 2-adrenergic receptor subtype has been cloned from a human kidney cDNA library using the gene for the human platelet alpha 2-adrenergic receptor as a probe. The deduced amino acid sequence resembles the human platelet alpha 2-adrenergic receptor and is consistent with the structure of other members of the family of guanine nucleotide-binding protein-coupled receptors. The cDNA was expressed in a mammalian cell line (COS-7), and the alpha 2-adrenergic ligand [3H]rauwolscine was bound. Competition curve analysis with a variety of adrenergic ligands suggests that this cDNA clone represents the alpha 2B-adrenergic receptor. The gene for this receptor is on human chromosome 4, whereas the gene for the human platelet alpha 2-adrenergic receptor (alpha 2A) lies on chromosome 10. This ability to express the receptor in mammalian cells, free of other adrenergic receptor subtypes, should help in developing more selective alpha-adrenergic ligands.
- Published
- 1988
- Full Text
- View/download PDF
24. Chimeric alpha 2-,beta 2-adrenergic receptors: delineation of domains involved in effector coupling and ligand binding specificity.
- Author
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Kobilka BK, Kobilka TS, Daniel K, Regan JW, Caron MG, and Lefkowitz RJ
- Subjects
- Amino Acid Sequence, Animals, Cloning, Molecular, GTP-Binding Proteins metabolism, Humans, Molecular Sequence Data, Pindolol analogs & derivatives, Pindolol metabolism, Protein Conformation, Yohimbine metabolism, Chimera, Receptors, Adrenergic, alpha genetics, Receptors, Adrenergic, beta genetics
- Abstract
The alpha 2 and beta 2 adrenergic receptors, both of which are activated by epinephrine, but which can be differentiated by selective drugs, have opposite effects (inhibitory and stimulatory) on the adenylyl cyclase system. The two receptors are homologous with each other, rhodopsin, and other receptors coupled to guanine nucleotide regulatory proteins and they contain seven hydrophobic domains, which may represent transmembrane spanning segments. The function of specific structural domains of these receptors was determined after construction and expression of a series of chimeric alpha 2-,beta 2-adrenergic receptor genes. The specificity for coupling to the stimulatory guanine nucleotide regulatory protein lies within a region extending from the amino terminus of the fifth hydrophobic domain to the carboxyl terminus of the sixth. Major determinants of alpha 2- and beta 2-adrenergic receptor agonist and antagonist ligand binding specificity are contained within the seventh membrane spanning domain. Chimeric receptors should prove useful for elucidating the structural basis of receptor function.
- Published
- 1988
- Full Text
- View/download PDF
25. An intronless gene encoding a potential member of the family of receptors coupled to guanine nucleotide regulatory proteins.
- Author
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Kobilka BK, Frielle T, Collins S, Yang-Feng T, Kobilka TS, Francke U, Lefkowitz RJ, and Caron MG
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, DNA Restriction Enzymes, Fetus, Humans, Introns, Placenta metabolism, GTP-Binding Proteins genetics, Genes, Receptors, Cell Surface genetics, Receptors, Drug genetics
- Abstract
Plasma membrane receptors for hormones, drugs, neurotransmitters and sensory stimuli are coupled to guanine nucleotide regulatory proteins. Recent cloning of the genes and/or cDNAs for several of these receptors including the visual pigment rhodopsin, the adenylate-cyclase stimulatory beta-adrenergic receptor and two subtypes of muscarinic cholinergic receptors has suggested that these are homologous proteins with several conserved structural and functional features. Whereas the rhodopsin gene consists of five exons interrupted by four introns, surprisingly the human and hamster beta-adrenergic receptor genes contain no introns in either their coding or untranslated sequences. We have cloned and sequenced a DNA fragment in the human genome which cross-hybridizes with a full-length beta 2-adrenergic receptor probe at reduced stringency. Like the beta 2-adrenergic receptor this gene appears to be intronless, containing an uninterrupted long open reading frame which encodes a putative protein with all the expected structural features of a G-protein-coupled receptor.
- Published
- 1987
- Full Text
- View/download PDF
26. Functional activity and regulation of human beta 2-adrenergic receptors expressed in Xenopus oocytes.
- Author
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Kobilka BK, MacGregor C, Daniel K, Kobilka TS, Caron MG, and Lefkowitz RJ
- Subjects
- Adenylyl Cyclases metabolism, Amino Acid Sequence, Animals, DNA analysis, Humans, Iodocyanopindolol, Isoproterenol pharmacology, Molecular Sequence Data, Pindolol analogs & derivatives, Pindolol metabolism, Protein Biosynthesis, Protein Conformation, Receptors, Adrenergic, beta biosynthesis, Xenopus, Cloning, Molecular, Oocytes metabolism, Receptors, Adrenergic, beta genetics
- Abstract
The recently cloned human beta-adrenergic cDNA and several mutated forms have been expressed in Xenopus laevis oocytes by injection of RNA made from the cDNA under the control of the bacteriophage SP6 promoter. The cDNA and gene of the beta 2-adrenergic receptor possess the unusual feature of having a second upstream ATG (-101 base pairs) and a 19-codon open reading frame 5' to the initiator methionine codon of the receptor (Kobilka, B. K., Dixon, R. A. F., Frielle, T., Dohlman, H. G., Bolanowski, M., Sigal, I. S., Yang-Feng, T. L., Francke, U., Caron, M. G., and Lefkowitz, R. J. (1987) Proc. Natl. Acad. Sci. U.S.A. 84, 46-50). RNA lacking this upstream AUG and open reading frame was translated approximately 10-fold more efficiently both in an in vitro rabbit reticulocyte system and in oocytes. Injected oocytes but not water injected controls expressed typical beta 2-adrenergic receptors as assessed by ligand binding (450 fmol/mg membrane protein) and catecholamine-stimulated adenylate cyclase (approximately 20 fold). Moreover, these receptors displayed typical agonist-induced homologous desensitization when oocytes were incubated with isoproterenol at room temperature for 3-24 h. Among a series of mutations, truncations of the membrane-anchored core of the receptor eliminated receptor binding and cyclase stimulating activity. In contrast, disruption of one of the cAMP-dependent protein kinase phosphorylation sites or removal of the serine/threonine-rich carboxyl terminus had little or no effect on these functions or on the extent of agonist-induced desensitization relative to that observed with native receptor. These studies validate the beta 2-adrenergic nature of the cloned human beta-adrenergic cDNA, document the utility of the Xenopus oocyte system for studying functional and regulatory properties of receptors coupled to adenylate cyclase, and suggest the possibility that elements in the 5' untranslated region of the beta 2-adrenergic receptor RNA may regulate its translation in vivo.
- Published
- 1987
27. Cloning, sequencing, and expression of the gene coding for the human platelet alpha 2-adrenergic receptor.
- Author
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Kobilka BK, Matsui H, Kobilka TS, Yang-Feng TL, Francke U, Caron MG, Lefkowitz RJ, and Regan JW
- Subjects
- Amino Acid Sequence, Base Sequence, Cloning, Molecular, GTP-Binding Proteins metabolism, Gene Expression Regulation, Genes, Humans, Infant, Newborn, Molecular Sequence Data, Multigene Family, Oligodeoxyribonucleotides, Phosphoproteins genetics, Blood Platelets physiology, Membrane Proteins genetics, Receptors, Adrenergic, alpha genetics
- Abstract
The gene for the human platelet alpha 2-adrenergic receptor has been cloned with oligonucleotides corresponding to the partial amino acid sequence of the purified receptor. The identity of this gene has been confirmed by the binding of alpha 2-adrenergic ligands to the cloned receptor expressed in Xenopus laevis oocytes. The deduced amino acid sequence is most similar to the recently cloned human beta 2- and beta 1-adrenergic receptors; however, similarities to the muscarinic cholinergic receptors are also evident. Two related genes have been identified by low stringency Southern blot analysis. These genes may represent additional alpha 2-adrenergic receptor subtypes.
- Published
- 1987
- Full Text
- View/download PDF
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