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Abstract Uropygial gland secretions of birds consist of host and bacteria derived compounds and play a major sanitary and feather-protective role. Here we report on our microbiome studies of the New Guinean toxic bird Pachycephala schlegelii and the isolation of a member of the Amycolatopsis genus from the uropygial gland secretions. Bioactivity studies in combination with co-cultures, MALDI imaging and HR-MS/MS-based network analyses unveil the basis of its activity against keratinolytic bacteria and fungal skin pathogens. We trace the protective antimicrobial activity of Amycolatopsis sp. PS_44_ISF1 to the production of rifamycin congeners, ciromicin A and of two yet unreported compound families. We perform NMR and HR-MS/MS studies to determine the relative structures of six members belonging to a yet unreported lipopeptide family of pachycephalamides and of one representative of the demiguisins, a new hexapeptide family. We then use a combination of phylogenomic, transcriptomic and knock-out studies to identify the underlying biosynthetic gene clusters responsible for the production of pachycephalamides and demiguisins. Our metabolomics data allow us to map molecular ion features of the identified metabolites in extracts of P. schlegelii feathers, verifying their presence in the ecological setting where they exert their presumed active role for hosts. Our study shows that members of the Actinomycetota may play a role in avian feather protection.

Abstract The processes generating the earth’s montane biodiversity remain a matter of debate. Two contrasting hypotheses have been advanced to explain how montane populations form: via direct colonization from other mountains, or, alternatively, via upslope range shifts from adjacent lowland areas. We seek to reconcile these apparently conflicting hypotheses by asking whether a species’ ancestral geographic origin determines its mode of mountain colonization. Island-dwelling passerine birds at the faunal crossroads between Eurasia and Australo-Papua provide an ideal study system. We recover the phylogenetic relationships of the region’s montane species and reconstruct their ancestral geographic ranges, elevational ranges, and migratory behavior. We also perform genomic population studies of three super-dispersive montane species/clades with broad island distributions. Eurasian-origin species populated archipelagos via direct colonization between mountains. This mode of colonization appears related to ancestral adaptations to cold and seasonal climates, specifically short-distance migration. Australo-Papuan-origin mountain populations, by contrast, evolved from lowland ancestors, and highland distribution mostly precludes their further colonization of island mountains. Our study explains much of the distributional variation within a complex biological system, and provides a synthesis of two seemingly discordant hypotheses for montane community formation.

Abstract Animal pollination is an important and highly valued ecosystem function and the role of birds as pollinators is increasingly acknowledged. However, such interactions can be challenging to document and often require extensive field programs. Over the last decade, environmental DNA (eDNA) has been analyzed from several different contemporary sample types, such as water, soil, flowers, and air. The applications of these studies include biodiversity monitoring, detection of endangered species, community compositions, and more recently, flower–arthropod interactions. However, it remains unknown whether flower eDNA is applicable to other taxonomic groups interacting with plants, as well as the deposition and degradation of eDNA on flowers. Here, we test whether eDNA from flowers can be used for detecting bird pollinators. In a controlled environment (an aviary with great tits [Parus major]), we show that birds leave significant traces of DNA on the flowers without observed visits (airborne eDNA). We further show that when birds had been in contact with the flowers, DNA concentrations increased to levels significantly higher than airborne background DNA. Subsequently, we sampled five clusters of wild flowers in Papua New Guinea and detected four species of birds, two of which are nectar‐feeders, and one that is an insectivorous species known to visit flowers. These four bird species were regularly seen in the area and caught in mist‐nets in the days prior to sampling of the flowers. In total, 29 bird species were recorded (18 mist‐netted) in the area and of these, eight are nectarivorous. Our quantitative approach suggests that it is possible to distinguish airborne background bird DNA deposited on flowers from actual flower visits of birds in the wild, although this might be highly context‐specific. Our findings are of broad interest within research on ecosystem functioning, biotic interactions, and plant–animal mutualism.

Decomposition is a major contributor to ecosystem respiration, determining the carbon emission and nutrient cycling rates. Our current understanding of decomposition dynamics and their underlying drivers has mainly focused on surface habitats but largely ignored in subterranean environments. Here we studied abiotic and microbial drivers of early-stage litter decomposition inside and outside caves along an elevational gradient in Tenerife. We found comparable decomposition rates (k) and litter stabilizing factors (S), with contrasting drivers and elevational variation. At the surface, we observed a mid-elevational trend in k, which tended to correlate with water availability, cooler temperatures, nutrient availability, and surface-specific bacterial taxa. In sharp contrast, caves showed no elevational impact nor influence of abiotic parameters and bacterial communities on k. Despite this, we found higher levels of S in caves, which were associated mainly with reduced water availability, lower temperatures and cave-specific bacterial taxa, indicating that conditions in caves are strongly linked with carbon storage. Our findings imply that our current perception of terrestrial habitat-based carbon cycling are underestimating the net carbon budget in areas with caves. Disentangling the role of the environment on decomposition in caves is key to fully characterize their roles in nutrient cycling and to understand how increasing anthropogenic pressures will affect fundamental processes in subterranean ecosystems.

Abstract Background Subarctic regions are particularly vulnerable to climate change, yet little is known about nutrient availability and biodiversity of their cave ecosystems. Such knowledge is crucial for predicting the vulnerability of these ecosystems to consequences of climate change. Thus, to improve our understanding of life in these habitats, we characterized environmental variables, as well as bacterial and invertebrate communities of six subarctic caves in Northern Norway. Results Only a minuscule diversity of surface-adapted invertebrates were found in these caves. However, the bacterial communities in caves were compositionally different, more diverse and more complex than the nutrient-richer surface soil. Cave soil microbiomes were less variable between caves than between surface communities in the same area, suggesting that the stable cave environments with tougher conditions drive the uniform microbial communities. We also observed only a small proportion of cave bacterial genera originating from the surface, indicating unique cave-adapted microbial communities. Increased diversity within caves may stem from higher niche specialization and levels of interdependencies for nutrient cycling among bacterial taxa in these oligotrophic environments. Conclusions Taken together this suggest that environmental changes, e.g., faster melting of snow as a result of global warming that could alter nutrient influx, can have a detrimental impact on interactions and dependencies of these complex communities. This comparative exploration of cave and surface microbiomes also lays the foundation to further investigate the long-term environmental variables that shape the biodiversity of these vulnerable ecosystems.

Islands and mountaintops are often considered evolutionary dead ends. Using whole genomic data of 18 bird species and demographic models, the authors show that populations become isolated at high elevations, but disjunct montane populations maintain gene flow and thus the capacity for further colonisation.

Advances in tracking technology have helped elucidate the movements of the planet's largest and most mobile species, but these animals do not represent faunal diversity as a whole. Tracking a more diverse array of animal species will enable testing of broad ecological and evolutionary hypotheses and aid conservation efforts. Small and sedentary species of the tropics make up a huge part of earth's animal diversity and are therefore key to this endeavor. Here, we investigated whether modern satellite tracking is a viable means for measuring the fine-scale movement patterns of such animals. We fitted five-gram solar-powered transmitters to resident songbirds in the rainforests of New Guinea, and analyzed transmission data collected over four years to evaluate movement detection and performance over time. Based upon the distribution of location fixes, and an observed home range shift by one individual, there is excellent potential to detect small movements of a few kilometers. The method also has clear limitations: total transmission periods were often short and punctuated by lapses; precision and accuracy of location fixes was limited and variable between study sites. However, impending reductions in transmitter size and price will alleviate many issues, further expanding options for tracking earth's faunal diversity.