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The ground-state intermolecular dissociation energies D0(S0) of supersonic-jet cooled intermolecular complexes of 1-naphthol (1NpOH) with the bi- and tricycloalkanes trans-decalin, cis-decalin, and adamantane were measured using the stimulated-emission-pumping/resonant two-photon ionization (SEP-R2PI) method. Using UV/UV holeburning, we identified two isomers (A and B) of the adamantane and trans-decalin complexes and four isomers (A–D) of the cis-decalin complex. For 1NpOH·adamantane A and B, the D0(S0) values are 21.6 ± 0.15 kJ/mol and 21.2 ± 0.32 kJ/mol, those of 1NpOH·trans-decalin A and B are 28.7 ± 0.3 kJ/mol and 28.1 ± 0.9 kJ/mol, and those of 1NpOH·cis-decalin A and B are 28.9 ± 0.15 kJ/mol and 28.7 ± 0.3 kJ/mol. Upon S0 → S1 electronic excitation of the 1NpOH moiety, the dissociation energies of adamantane, trans-decalin, and the cis-decalin isomer C change by <1% and those of cis-decalin isomers A, B, and D increase only slightly (1%–3%). This implies that the hydrocarbons are dispersively adsorbed to a naphthalene "face." Calculations using the dispersion-corrected density functional theory methods B97-D3 and B3LYP-D3 indeed predict that the stable structures have face geometries. The B97-D3 calculated D0(S0) values are within 1 kJ/mol of the experiment, while B3LYP-D3 predicts D0 values that are 1.4–3.3 kJ/mol larger. Although adamantane has been recommended as a "dispersion-energy donor," the binding energies of the trans- and cis-decalin adducts to 1NpOH are 30% larger than that of adamantane. In fact, the D0 value of 1NpOH·adamantane is close to that of 1NpOH·cyclohexane, reflecting the nearly identical contact layer between the two molecules. [ABSTRACT FROM AUTHOR]

The stimulated-emission-pumping/resonant 2-photon ionization (SEP-R2PI) method was used to determine the intermolecular dissociation energies D0 of jet-cooled 1-naphthol(1NpOH)·S complexes, where S is a linear molecule (N2, CO, CO2, OCS, N2O, and ethyne) or symmetric-top molecule (2-butyne) that contains double or triple bonds. The dissociation energies D0(S0) are bracketed as follows: 6.68 ± 0.08 kJ/mol for S=N2, 7.7 ± 0.8 kJ/mol for CO, 12.07 ± 0.10 kJ/mol for CO2, 13.03 ± 0.01 kJ/mol for N2O, 14.34 ± 0.08 kJ/mol for ethyne, 15.0 ± 1.35 kJ/mol for OCS, and 29.6 ± 2.4 kJ/mol for 2-butyne. The minimum-energy structures, vibrational wavenumbers, and zero-point vibrational energies were calculated using the dispersion-corrected density functional theory methods such as B97-D3 and B3LYP-D3 with the def2-QZVPP basis set. These predict that N2 and CO are dispersively bound Face complexes (S bound to a naphthalene Face), while CO2, N2O, and OCS adsorb into the "Notch" between the naphthyl and OH groups; these are denoted as Notch complexes. Ethyne and 2-butyne form Edge complexes involving H-bonds from the —OH group of 1NpOH to the center of the molecule. The presence of a double or triple bond or an aromatic C=C bond within S does not lead to a specific calculated geometry (Face, Notch or Edge). However, a correlation exists between the structure and the sign of the quadrupole moment component Θzz of S: negative Θzz correlates with Face or Notch, while positive Θzz correlates with Edge geometries. [ABSTRACT FROM AUTHOR]

We have measured the intermolecular dissociation energies D0 of supersonically cooled 1-naphthol (1NpOH) complexes with solvents S = furan, thiophene, 2,5-dimethylfuran, and tetrahydrofuran. The naphthol OH forms non-classical H-bonds with the aromatic π-electrons of furan, thiophene, and 2,5-dimethylfuran and a classical H-bond with the tetrahydrofuran O atom. Using the stimulated-emission pumping resonant two-photon ionization method, the ground-state D0(S0) values were bracketed as 21.8 ± 0.3 kJ/mol for furan, 26.6 ± 0.6 kJ/mol for thiophene, 36.5 ± 2.3 kJ/mol for 2,5-dimethylfuran, and 37.6 ± 1.3 kJ/mol for tetrahydrofuran. The dispersion-corrected density functional theory methods B97-D3, B3LYP-D3 (using the def2-TZVPP basis set), and ωB97X-D [using the 6-311++G(d,p) basis set] predict that the H-bonded (edge) isomers are more stable than the face isomers bound by dispersion; experimentally, we only observe edge isomers. We compare the calculated and experimental D0 values and extend the comparison to the previously measured 1NpOH complexes with cyclopropane, benzene, water, alcohols, and cyclic ethers. The dissociation energies of the nonclassically H-bonded complexes increase roughly linearly with the average polarizability of the solvent, α ¯ (S). By contrast, the D0 values of the classically H-bonded complexes are larger, increase more rapidly at low α ¯ (S), but saturate for large α ¯ (S). The calculated D0(S0) values for the cyclopropane, benzene, furan, and tetrahydrofuran complexes agree with experiment to within 1 kJ/mol and those of thiophene and 2,5-dimethylfuran are ∼3 kJ/mol smaller than experiment. The B3LYP-D3 calculated D0 values exhibit the lowest mean absolute deviation (MAD) relative to experiment (MAD = 1.7 kJ/mol), and the B97-D3 and ωB97X-D MADs are 2.2 and 2.6 kJ/mol, respectively. [ABSTRACT FROM AUTHOR]

Using the stimulated-emission-pumping/resonant 2-photon ionization (SEP-R2PI) method, we have determined accurate intermolecular dissociation energies D0 of supersonic jet-cooled intermolecular complexes of 1-naphthol (1NpOH) with alkanes, 1NpOH·S, with S = methane, ethane, propane, and n-butane. Experimentally, the smaller alkanes form a single minimum-energy structure, while 1-naphthol·n-butane forms three different isomers. The ground-state dissociation energies D0(S0) for the complexes with propane and n-butane (isomers A and B) were bracketed within ±0.5%, being 16.71 ± 0.08 kJ/mol for S = propane and 20.5 ± 0.1 kJ/mol for isomer A and 20.2 ± 0.1 kJ/mol for isomer B of n-butane. All 1NpOH·S complexes measured previously exhibit a clear dissociation threshold in their hot-band detected SEP-R2PI spectra, but weak SEP-R2PI bands are observed above the putative dissociation onset for the methane and ethane complexes. We attribute these bands to long-lived complexes that retain energy in rotation-type intermolecular vibrations, which couple only weakly to the dissociation coordinates. Accounting for this, we find dissociation energies of D0(S0) = 7.98 ± 0.55 kJ/mol (±7%) for S = methane and 14.5 ± 0.28 kJ/mol (±2%) for S = ethane. The D0 values increase by only 1% upon S0 → S1 excitation of 1-naphthol. The dispersion-corrected density functional theory methods B97-D3, B3LYP-D3, and ωB97X-D predict that the n-alkanes bind dispersively to the naphthalene “Face.” The assignment of the complexes to Face structures is supported by the small spectral shifts of the S0 → S1 electronic origins, which range from +0.5 to −15 cm−1. Agreement with the calculated dissociation energies D0(S0) is quite uneven, the B97-D3 values agree within 5% for propane and n-butane, but differ by up to 20% for methane and ethane. The ωB97X-D method shows good agreement for methane and ethane but overestimates the D0(S0) values for the larger n-alkanes by up to 20%. The agreement of the B3LYP-D3 D0 values is intermediate between the other two methods. [ABSTRACT FROM AUTHOR]

The design of a new ion mobility mass spectrometer (IMMS) is presented. This new design features an ambient-pressure resistive glass ion mobility drift tube (RGIMS) coupled to a high-resolution time-of-flight mass spectrometer (TOFMS) by an enhanced interface that includes two segmented quadrupoles. The interface design demonstrates an increase in sensitivity while maintaining high resolving power typically achieved for ambient-pressure IMS drift tubes. Performance of the prototype instrument was evaluated and the analytical figures of merit for standard solutions as well as complex samples such as human blood were determined. For a 3 [micro]M solution of caffeine, the peak was collected in 36 s and gave a response of 10 counts/s. The detection limit (defined as 1 count/s) was calculated to be 300 nM concentration of caffeine from the response rate from the 36 s run. Controlled fragmentation of caffeine was achieved through adjustment of voltages applied on the interface lenses. Over 300 tentative metabolites were detected in human blood along with 80 isomers/isobars with ion counts > 5. Isotope ratios from extracted mass spectra of selected mobility peaks were used to identify selected metabolite compounds. High separation power for both IMS (resolving power, [t.sub.d]/[DELTA][t.sub.w1/2], was 85) and MS (mass resolving power, m/[DELTA]m, maximum was 7000 with a mass accuracy between 2 and 10 ppm) was measured. Developed software for data acquisition, control and display allowed flexibility in instrument control, data evaluation and visualization. 10.1021/ac1017259

Matrix-assisted laser desorption/ionization mass spectrometry imaging is a technique for direct analysis of tissue sections without the use of molecular tags or contrast agents. The combination of spatial and mass resolution results in large and complex data sets that require powerful and efficient analysis and interpretation tools. Conventional images, derived from a specific analyte mass, do not identify the spatially localized correlations between analytes that are latent in the data. A new approach to find and visualize these correlations is presented. Clustering methods are used to classify pixels by spectral similarity, facilitating definition of distinct spatial regions. Principal component and discriminant analyses are combined to comprehensively identify changes in the mass spectra between regions. Images are generated by projecting the spectra of each pixel on the discriminant spectra; contrast is then a function of multiple correlated peaks.

Energy transfer from excited matrix to fluorescent traps is used to probe the mobility of excitations in the matrix-assisted laser desorption/ionization (MALDI) matrix material 2,5-dihydroxybenzoic acid. The results validate the pooling aspect of the prior quantitative MALDI ionization model.

The matrix suppression effect (MSE) can lead to high-quality MALDI mass spectra: strong analyte signals and weak or negligible matrix background peaks. Experiment and theory suggest that MSE should be widespread and, therefore, generally applicable to measurement of low molecular weight (LMW) substances. These are otherwise impractical with MALDI due to interference from matrix. Appropriate conditions for MSE were investigated and tested on a variety of LMW substances. Straightforward and semiautomated interpretation was possible for 87.7% of these. Another 3.5% gave poor MSE due to sodium cationization rather than protonation of the analyte, but interpretation was possible. MALDI imaging shows that MSE varies significantly across a typical sample. Selective data accumulation could further increase the utility of the method. Samples containing more than one analyte were also studied. Analyte-analyte suppression was not found to be excessive, and moderately abundant minority species can be adequately detected.

The recently developed model for primary and secondary UV-MALDI ion formation (Knochenmuss, R. J. Mass Spectrom. 2002, 37, 867-877. Knochenmuss, R. Anal. Chem. 2003, 75, 2199.) is applied to questions regarding photoionization pathways and electron versus negative ion production. Two-photon ionization of the matrix in direct contact with analyte is possible under some circumstances (Kinsel, G.; Knochenmuss, R.; Setz, P.; Land, C. M.; Goh, S.-K.; Archibong, E. F.; Hardesty, J. H.; Marynik, D. J. Mass Spectrom. 2002, 37, 1131-1140.), and is added to the model. When analyte is present in large mole ratios (such as when matrix suppression is desired), this effect contributes modestly to the ion yield. Generally, matrix exciton pooling remains dominant. The interfacial layer of thin samples on a metal substrate may also be ionizable in a 2-photon process. A mechanism is proposed, and the correspondingly modified model gives excellent agreement with electron emission versus laser intensity data. Capture in, or escape of low-energy electrons from a thick sample (or on a nonmetallic substrate) is also examined. Because the mean free path for MALDI electrons in a solid matrix is on the order of 10 nm, below such depths, any electrons generated are captured to form negative ions. Only a surface layer can emit free electrons. This surface emission effect is also well reproduced by the model, up to a laser intensity limit caused by surface charging. This charging phenomenon is investigated and illustrated by molecular dynamics calculations.

Four aromatic molecules and their gas-phase potassium binding free energies used as matrices in ionization mass spectrometry are determined experimentally. The method used for this purpose is the ligand-exchange equilibrium method.

A quantitative model of ionization in ultraviolet matrix-assisted laser desorption/ionization (Knochenmuss, R. J. Mass Spectrom. 2002, 37, 867) is extended to include secondary ion-molecule reactions. Matrix-to-analyte charge-transfer reaction kinetics are described by a hard-sphere Arrhenius expression. The activation energy is derived from the reaction exoergicity using a nonlinear free energy relationship. The approach is applied to the specific case of proton-transfer reactions. With no adjustable parameters, the model correctly predicts the existence and characteristics of the matrix and analyte suppression effects, the shapes of the two-pulse time-delayed yield curves, and the dependence of analyte yields on laser fluence, molecular weight, relative concentrations, and reaction exoergicity.

The theoretical calculation of gas-phase sodium binding energies of common matrix-assisted laser desorption /ionization (MALDI) matrices is presented. It is compared with the experimental results obtained by the ligand-exchange equilibrium method and is found to be in good agreement with the results.

Resonant two-photon ionization (R2PI) and fluorescence spectroscopic studies of cluster of the strong excited-state photoacid, 5-cyano-2-naphthol (5CN2NpOH), generated in a molecular beam in solvents, such as water, ammonia, methanol and Me2SO are discussed. The excited-state proton transfer (ESPT) behavior of cluster 5CN2NpOH was found to be analogous with parent noncyano compound, 1NpOH, with greater photoacidity.

It has been possible to obtain time-delayed 2-pulse matrix-assisted laser desorption/ionization results for 2,5 dihydroxybenzoic acid matrix ions using 30 ps 355 nm excitation. It was established that at least two ion-formation mechanisms are active.

The 1-naphthol·cyclopropane intermolecular complex is formed in a supersonic jet and investigated by resonant two-photon ionization (R2PI) spectroscopy, UV holeburning, and stimulated emission pumping (SEP)-R2PI spectroscopy. Two very different structure types are inferred from the vibronic spectra and calculations. In the "edge" isomer, the OH group of 1-naphthol is directed towards a C--C bond of cyclopropane, the two ring planes are perpendicular. In the "face" isomer, the cyclopropane is adsorbed on one of the π-aromatic faces of the 1-naphthol moiety, the ring planes are nearly parallel. Accurate ground-state intermolecular dissociation energies D0 were measured with the SEP-R2PI technique. The D0(S0) of the edge isomer is bracketed as 15.35 « 0.03 kJ/mol, while that of the face isomer is 16.96 « 0.12 kJ/mol. The corresponding excited-state dissociation energies D0(S1) were evaluated using the respective electronic spectral shifts. Despite the D0(S0) difference of 1.6 kJ/mol, both isomers are observed in the jet in similar concentrations, so they must be separated by substantial potential energy barriers. Intermolecular binding energies, De, and dissociation energies, D0, calculated with correlated wave function methods and two dispersion-corrected density-functional methods are evaluated in the context of these results. The density functional calculations suggest that the face isomer is bound solely by dispersion interactions. Binding of the edge isomer is also dominated by dispersion, which makes up two thirds of the total binding energy. [ABSTRACT FROM AUTHOR]

The light-induced aging of natural triterpenes used in varnishes was studied using graphite-assisted laser desorption/ionization mass spectrometry. This method was found to be superior to conventional matrix-assisted laser desorption/ionization for these materials because of higher signal levels and less chemical noise from the matrix. The dammar and mastic raw materials were found to be partially oxidized compared to their nominal composition, with up to six oxygens incorporated. The light-induced aging process leads initially to polymerization, up to trimers. Further aging leads to a decrease in average molecular weight. These observations are supplemented by FTIR and 13C NMR spectra which show complete reaction of keto groups to acids and peroxy species. A general mechanism for the process is proposed, and the consequences for properties of varnish films are investigated.

A molecular dynamics model of ultraviolet matrix-assisted laser desorption/ionization (UV-MALDI) is developed to help understand the interaction between mechanical and reactive processes in the challenging time range during and shortly after the laser pulse. Methods are developed to handle long-range Coulomb forces and the long mean free path of low-energy electrons.

Time-resolved fluorescence spectra of 1-naphthol·(H2O)n clusters formed in a supersonic jet were measured under conditions of strong and weak cooling. Wavelength selectivity was used to excite very similar size distributions in both cases, thereby allowing controlled study of temperaturelike effects of internal energy in clusters. In both warm and cold clusters, long wavelength fluorescence from 1-naphtholate formed via an intermolecular excited state proton transfer (ESPT) reaction is observed, but this emission was significantly more red-shifted in warmer clusters. The fluorescence spectra of warmer clusters also shift strongly to the red after excitation, on a time scale of about 10 ns. Colder clusters showed no spectral shifts on this time scale. A weak solvent isotope effect was also observed. Similar clusters of 2-naphthol with water were not observed to undergo ESPT under any conditions. The time-dependent spectra indicate that ESPT in warm 1-naphthol·water clusters is not prompt, but continues on a ∼10 ns time scale, as does dynamic stabilization of previously reacted clusters. The ESPT rate is believed to be controlled by the rate at which the water relaxes around the naphthol, via interaction with two electronic excited states. The 10 ns and the two faster [R. Knochenmuss, G. R. Holtom, and D. Ray, Chem. Phys. Lett. 215, 188 (1993)] time scales now known in the spectral dynamics are discussed in terms of water solvation relaxation, and connected to the bulk by means of molecular dynamics simulations. [ABSTRACT FROM AUTHOR]

We report the mass resolved resonant two-photon ionization spectra of C6D6·Arn clusters up to n=70. Shifts of the benzene S1←S0 610 vibronic band were studied as a function of both cluster size and expansion conditions. We find that clusters in different size ranges exhibit remarkably different spectra, which also depend on expansion conditions and, hence, cluster internal energy. Below n=16, spectral features trend toward the blue with increasing size. Above n=16, all features exhibit weak size dependence over wide size ranges. In the n=20–40 range, four distinct bands were found, which we suggest could be due to fully enclosed fluxional (-55 cm-1 vs free C6D6), partially enclosed rigid (-43 cm-1), and one-sided rigid (-32 cm-1) or one-sided fluxional (also -32 cm-1, broader) structural types. Above n=40, only one band was definitely identified (at -26 cm-1), which may be due to a one-sided rigid structural type. The trends in spectral shift vs size give no indication of approaching bulk-like solvation of the benzene. Only one subpopulation between n=20 and 40 may show similarity to macroscopic benzene–argon solutions. [ABSTRACT FROM AUTHOR]