26 results on '"Kizil G"'
Search Results
2. The development and implementation of a minerals industry risk management gateway
- Author
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Kizil, G, primary and Joy, J, additional
- Published
- 2005
- Full Text
- View/download PDF
3. Coal dust exposures in the longwall mines of New South Wales, Australia: a respiratory risk assessment
- Author
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Kizil, G. V. and Donoghue, A. M.
- Published
- 2002
4. DNA cleavage protecting activity and in vitro antioxidant potential of aqueous extract from fresh stems ofRheum ribes
- Author
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Emen Tanrikut, S., primary, Çeken, B., additional, Altaş, S., additional, Pirinççioğlu, M., additional, Kizil, G., additional, and Kizil, M., additional
- Published
- 2013
- Full Text
- View/download PDF
5. In vivo Wnt signaling tracing through a transgenic biosensor fish reveals novel activity domains
- Author
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Moro, E., Ozhan-Kizil, G., Mongera, A., Beis, D., Wierzbicki, C., Young, R., Bournele, D., Domenichini, Alice, Valdivia, L., Lum, L., Chen, C., Amatruda, J., Tiso, N., Weidinger, G., Argenton, F., Moro, E., Ozhan-Kizil, G., Mongera, A., Beis, D., Wierzbicki, C., Young, R., Bournele, D., Domenichini, Alice, Valdivia, L., Lum, L., Chen, C., Amatruda, J., Tiso, N., Weidinger, G., and Argenton, F.
- Abstract
The creation of molecular tools able to unravel in vivo spatiotemporal activation of specific cell signaling events during cell migration, differentiation and morphogenesis is of great relevance to developmental cell biology. Here, we describe the generation, validation and applications of two transgenic reporter lines for Wnt/?-catenin signaling, named TCFsiam, and show that they are reliable and sensitive Wnt biosensors for in vivo studies. We demonstrate that these lines sensitively detect Wnt/?-catenin pathway activity in several cellular contexts, from sensory organs to cardiac valve patterning. We provide evidence that Wnt/?-catenin activity is involved in the formation and maintenance of the zebrafish CNS blood vessel network, on which sox10 neural crest-derived cells migrate and proliferate. We finally show that these transgenic lines allow for screening of Wnt signaling modifying compounds, tissue regeneration assessment as well as evaluation of potential Wnt/?-catenin genetic modulators. © 2012 Elsevier Inc.
- Published
- 2012
6. Protective activity of ethanol extract of threeAchilleaspecies against lipid peroxidation, protein oxidation and DNA damage in vitro
- Author
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Kizil, M., primary, Kizil, G., additional, Yavuz, M., additional, and ÇeKen, B., additional
- Published
- 2010
- Full Text
- View/download PDF
7. Decision support system for environmental impact assessment in surface mine design.
- Author
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Denby B., Minerals, metals and the environment Manchester 04-Feb-9206-Feb-92, Brockdorff C., Kizil G., Mamurekli D., Denby B., Minerals, metals and the environment Manchester 04-Feb-9206-Feb-92, Brockdorff C., Kizil G., and Mamurekli D.
- Abstract
The adoption of an integrated philosophy to mine design and environmental impact assessment provides the most efficient approach to reduction of environmental problems in surface mining operations. It is shown how careful employment of appropriate computer technology can assist in this philosophy. The use of CAD, GIS and knowledge-based expert systems in an integrated and synergistic framework can result in more and better alternative designs being generated. The modular system employed will also facilitate an efficient upgrade path when alternative assessment techniques become available or are required for specific situations., The adoption of an integrated philosophy to mine design and environmental impact assessment provides the most efficient approach to reduction of environmental problems in surface mining operations. It is shown how careful employment of appropriate computer technology can assist in this philosophy. The use of CAD, GIS and knowledge-based expert systems in an integrated and synergistic framework can result in more and better alternative designs being generated. The modular system employed will also facilitate an efficient upgrade path when alternative assessment techniques become available or are required for specific situations.
- Published
- 1992
8. A Decision Support System for Dust Assessment in Surface Mines
- Author
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Kizil, G., primary, Kizil, M. S., additional, and Denby, B., additional
- Published
- 1997
- Full Text
- View/download PDF
9. Identification and characterization of TspA, a major CD4(+) T-cell- and B-cell-stimulating Neisseria-specific antigen.
- Author
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Kizil, G, Todd, I, Atta, M, Borriello, S P, Ait-Tahar, K, and Ala'Aldeen, D A
- Abstract
In search for novel T-cell immunogens involved in protection against invasive meningococcal disease, we screened fractionated proteins of Neisseria meningitidis (strain SD, B:15:P1.16) by using peripheral blood mononuclear cells (PBMCs) and specific T-cell lines obtained from normal individuals and patients convalescing from N. meningitidis infection. Proteins of iron-depleted meningococci produced higher PBMC proliferation indices than proteins of iron-replete organisms, indicating that iron-regulated proteins are T-cell immunogens. Insoluble proteins of the iron-depleted cells, which produced better T-cell stimulation than soluble ones, were fractionated by using sodium dodecyl sulfate-polyacrylamide gels and recovered as five fractions (F1 to F5) corresponding to decreasing molecular weight ranges. The proteins were purified (by elution and precipitation) or electroblotted onto nitrocellulose membranes (dissolved and precipitated) before use in further T-cell proliferation assays. One of the fractions (F1), containing high-molecular-mass proteins (>130 kDa), consistently showed the strongest T-cell proliferation responses in all of the T-cell lines examined. F1 proteins were subdivided into four smaller fractions (F1A to F1D) which were reexamined in T-cell proliferation assays, and F1C induced the strongest responses in patients' T-cell lines. Rabbit polyclonal antibodies to F1C components were used to screen a genomic expression library of N. meningitidis. Two major clones (C1 and C24) of recombinant meningococcal DNA were identified and fully sequenced. Sequence analysis showed that C24 (1,874 bp) consisted of a single open reading frame (ORF), which was included in clone C1 (2, 778 bp). The strong CD4(+) T-cell-stimulating effect of the polypeptide product of this ORF (named TspA) was confirmed, using a patient T-cell line. Immunogenicity for B cells was confirmed by showing that convalescent patients' serum antibodies recognized TspA on Western blots. Additional genetic sequence downstream of C24 was obtained from the meningococcal genomic sequence database (Sanger Centre), enabling the whole gene of 2,761 bp to be reconstructed. The DNA and deduced amino acid sequence data for tspA failed to show significant homology to any known gene, except for a corresponding (uncharacterized) gene in Neisseria gonorrhoeae genome sequences, suggesting that tspA is unique to the genus Neisseria. The DNA and deduced amino acid sequence of the second ORF of clone C1 showed significant homology to gloA, encoding glyoxalase I enzyme, of Salmonella typhimurium and Escherichia coli. Thus, we have identified a novel neisserial protein (TspA) which proved to be a strong CD4(+) T-cell- and B-cell-stimulating immunogen with potential as a possible vaccine candidate.
- Published
- 1999
10. Antimicrobial activity of the resins obtained from the roots and stems of Cedrus libani and Abies cilicica
- Author
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Kizil, M., Kizil, G., Yavuz, M., and Çetin Aytekin
11. A decision support system for dust assessment in surface mines.
- Author
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Kizil G., Denby B., Kizil M.S., Kizil G., Denby B., and Kizil M.S.
- Abstract
The Expert Dust Modelling System (EDMS) uses the Xi-Plus expert system shell and Pascal programming language. A modelling interface knowledge base runs an external program to identify areas of high dust deposition and the major source or sources. It requires accurate data on meteorological conditions, derived from on-site measurements or nearby stations, and on the various mining operations as well as emission factor calculation formulae. The results are analysed by the solution knowledge base, which takes account of activity type, dust deposition rate, dust control effectiveness and cost to suggest an effective and economical control mechanism for reducing emissions from the problem source., The Expert Dust Modelling System (EDMS) uses the Xi-Plus expert system shell and Pascal programming language. A modelling interface knowledge base runs an external program to identify areas of high dust deposition and the major source or sources. It requires accurate data on meteorological conditions, derived from on-site measurements or nearby stations, and on the various mining operations as well as emission factor calculation formulae. The results are analysed by the solution knowledge base, which takes account of activity type, dust deposition rate, dust control effectiveness and cost to suggest an effective and economical control mechanism for reducing emissions from the problem source.
12. Oxidative stress parameters in children with acute rheumatic fever.
- Author
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Gözü Pirinccioglu A, Alyan Ö, Akin A, Kizil G, and Işik FB
- Subjects
- Biomarkers metabolism, Case-Control Studies, Child, Cytokines metabolism, Disease Progression, Female, Humans, Male, Matched-Pair Analysis, Prospective Studies, Rheumatic Fever diagnosis, Rheumatic Fever metabolism, Oxidative Stress, Rheumatic Fever physiopathology
- Abstract
Background: The aim of this study was to investigate of the role of oxidative stress (OS) in acute rheumatic fever (ARF) and its relationship with the progress of the disease., Methods: Thirty patients with ARF and 31 age-sex-matched healthy children were enrolled in this study. Serum malondialdehyde (MDA), protein carbonyl (PCO), high-sensitivity C-reactive protein (hs-CRP), cytokines (tumor necrosis factor-α and interleukin-6) and total antioxidant capacity (TAC) were measured. The diagnosis of ARF was based on the Jones criteria., Results: Patients with ARF had significantly higher serum MDA, PCO, hs-CRP and cytokine levels and lower TAC than healthy controls. On Pearson's correlation analysis we found that oxidative stress markers were positively correlated with hs-CRP and cytokines, while TAC was negatively correlated with MDA, PCO, hs-CRP and cytokines. The number of valves involved as well as the level of mitral valve involvement was also significantly related to the oxidative stress parameters and TAC. All oxidative stress parameters decreased significantly with anti-inflammatory therapy while TAC increased., Conclusion: Malondialdehyde and PCO, as biomarkers, as well as hs-CRP together with the other available diagnostic tools, can be used in the evaluation of patients with ARF., (© 2019 Japan Pediatric Society.)
- Published
- 2019
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13. Do 100- and 500-μT ELF magnetic fields alter beta-amyloid protein, protein carbonyl and malondialdehyde in rat brains?
- Author
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Akdag MZ, Dasdag S, Cakir DU, Yokus B, Kizil G, and Kizil M
- Subjects
- Animals, Male, Rats, Rats, Sprague-Dawley, Amyloid beta-Peptides metabolism, Brain metabolism, Magnetic Fields, Malondialdehyde metabolism, Protein Carbonylation
- Abstract
Several studies still state that presently accepted safety standards for extremely low-frequency magnetic fields (ELF-MFs) do not provide adequate protection, and therefore the standards are still open to question. To help resolve this question, the aim of this study was to illuminate the interaction between biomolecules and ELF-MFs by investigating the effect of ELF-MFs on beta-amyloid protein (BAP), protein carbonyl (PC) and malondialdehyde (MDA) in rat brain. For this study, 30 adult male Sprague-Dawley rats were used, which were divided into two experimental groups and a sham exposed group. Rats in two experimental groups were exposed to 100- and 500-μT ELF-MFs (50 Hz) for 2 h/day for 10 months, which are the generally accepted safety standards for public and occupational exposures. The same procedures were applied to the rats in the sham group, but with the generator turned off. The results of this study showed that neither ELF-MFs used in this study altered BAP level significantly (p>0.05). However, PC and MDA levels were increased by the exposure to 100- and 500-μT ELF-MFs (p < 0.0001). In conclusion, both PC and MDA levels were altered by long-term exposure to either 100 or 500 μT ELF-MF. However, many further and more comprehensive studies will be required to elucidate the interaction mechanisms between ELF-MFs exposure and living organisms.
- Published
- 2013
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14. In vivo Wnt signaling tracing through a transgenic biosensor fish reveals novel activity domains.
- Author
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Moro E, Ozhan-Kizil G, Mongera A, Beis D, Wierzbicki C, Young RM, Bournele D, Domenichini A, Valdivia LE, Lum L, Chen C, Amatruda JF, Tiso N, Weidinger G, and Argenton F
- Subjects
- Animals, Animals, Genetically Modified, Biosensing Techniques, Cell Differentiation, Cell Movement, Neurons cytology, Neurons physiology, Zebrafish embryology, Wnt Signaling Pathway, Zebrafish physiology
- Abstract
The creation of molecular tools able to unravel in vivo spatiotemporal activation of specific cell signaling events during cell migration, differentiation and morphogenesis is of great relevance to developmental cell biology. Here, we describe the generation, validation and applications of two transgenic reporter lines for Wnt/β-catenin signaling, named TCFsiam, and show that they are reliable and sensitive Wnt biosensors for in vivo studies. We demonstrate that these lines sensitively detect Wnt/β-catenin pathway activity in several cellular contexts, from sensory organs to cardiac valve patterning. We provide evidence that Wnt/β-catenin activity is involved in the formation and maintenance of the zebrafish CNS blood vessel network, on which sox10 neural crest-derived cells migrate and proliferate. We finally show that these transgenic lines allow for screening of Wnt signaling modifying compounds, tissue regeneration assessment as well as evaluation of potential Wnt/β-catenin genetic modulators., (Copyright © 2012 Elsevier Inc. All rights reserved.)
- Published
- 2012
- Full Text
- View/download PDF
15. Effect of 900 MHz radio frequency radiation on beta amyloid protein, protein carbonyl, and malondialdehyde in the brain.
- Author
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Dasdag S, Akdag MZ, Kizil G, Kizil M, Cakir DU, and Yokus B
- Subjects
- Animals, Male, Rats, Rats, Wistar, Time Factors, Amyloid beta-Peptides metabolism, Brain metabolism, Brain radiation effects, Malondialdehyde metabolism, Protein Carbonylation radiation effects, Radio Waves adverse effects
- Abstract
Recently, many studies have been carried out in relation to 900 MHz radiofrequency radiation (RF) emitted from a mobile phone on the brain. However, there is little data concerning possible mechanisms between long-term exposure of RF radiation and biomolecules in brain. Therefore, we aimed to investigate long-term effects of 900 MHz radiofrequency radiation on beta amyloid protein, protein carbonyl, and malondialdehyde in the rat brain. The study was carried out on 17 Wistar Albino adult male rats. The rat heads in a carousel were exposed to 900 MHz radiofrequency radiation emitted from a generator, simulating mobile phones. For the study group (n: 10), rats were exposed to the radiation 2 h per day (7 days a week) for 10 months. For the sham group (n: 7), rats were placed into the carousel and the same procedure was applied except that the generator was turned off. In this study, rats were euthanized after 10 months of exposure and their brains were removed. Beta amyloid protein, protein carbonyl, and malondialdehyde levels were found to be higher in the brain of rats exposed to 900 MHz radiofrequency radiation. However, only the increase of protein carbonyl in the brain of rats exposed to 900 MHz radiofrequency radiation was found to be statistically significant (p<0.001). In conclusion, 900 MHz radiation emitted from mobile/cellular phones can be an agent to alter some biomolecules such as protein. However, further studies are necessary.
- Published
- 2012
- Full Text
- View/download PDF
16. Evaluation of oxidative stress in children with congenital heart defects.
- Author
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Pirinccioglu AG, Alyan O, Kizil G, Kangin M, and Beyazit N
- Subjects
- Biomarkers metabolism, C-Reactive Protein metabolism, Case-Control Studies, Child, Female, Fibrinogen metabolism, Humans, Interleukin-6 metabolism, Lipid Peroxidation, Male, Malondialdehyde metabolism, Protein Carbonylation, Tumor Necrosis Factor-alpha metabolism, Acute-Phase Proteins metabolism, Cytokines metabolism, Heart Defects, Congenital metabolism, Oxidative Stress
- Abstract
Background: A significant cause of death and chronic illness in childhood is caused by cardiovascular diseases, including congenital heart disease (CHD). This study aims to investigate the oxidative stress status and to establish its association with CHD in children., Methods: The study involves measurements of malondialdehyde (MDA), protein carbonyl (PCO), total anti-oxidant capacity, high-sensitive C-reactive protein (hs-CRP), fibrinogen and cytokine (interleukin [IL-6] and tumor necrosis factor-α) levels in 43 children with CHD and 30 healthy age-matched children., Results: MDA, PCO, hs-CRP, fibrinogen, IL-6 and tumor necrosis factor-α were significantly elevated while total anti-oxidant capacity was significantly declined in patients compared with the controls. MDA was positively correlated with PCO, hs-CRP, Qp/Qs and systolic pulmonary artery pressure. PCO was positively correlated with hs-CRP, fibrinogen, IL-6 and systolic pulmonary artery pressure., Conclusion: Oxidative stress and its association with other markers in children with CHD was established. To the best of our knowledge, this is the first time that PCO has been used as a biomarker in CHD and it may be employed as a new diagnostic biomarker in CHD and in the assessment of its severity., (© 2011 The Authors. Pediatrics International © 2011 Japan Pediatric Society.)
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- 2012
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17. Waif1/5T4 inhibits Wnt/β-catenin signaling and activates noncanonical Wnt pathways by modifying LRP6 subcellular localization.
- Author
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Kagermeier-Schenk B, Wehner D, Ozhan-Kizil G, Yamamoto H, Li J, Kirchner K, Hoffmann C, Stern P, Kikuchi A, Schambony A, and Weidinger G
- Subjects
- Animals, Animals, Genetically Modified, Cell Line, Frizzled Receptors metabolism, Gene Expression Regulation, Developmental, Humans, Intercellular Signaling Peptides and Proteins metabolism, Low Density Lipoprotein Receptor-Related Protein-6 genetics, Mesoderm embryology, Mesoderm metabolism, Molecular Sequence Data, Neural Plate embryology, Neural Plate metabolism, Recombinant Proteins genetics, Recombinant Proteins metabolism, Xenopus embryology, Xenopus genetics, Xenopus metabolism, Xenopus Proteins metabolism, Zebrafish embryology, Zebrafish genetics, Low Density Lipoprotein Receptor-Related Protein-6 metabolism, Wnt Signaling Pathway, Zebrafish metabolism, Zebrafish Proteins metabolism, beta Catenin metabolism
- Abstract
Wnt proteins can activate distinct signaling pathways, but little is known about the mechanisms regulating pathway selection. Here we show that the metastasis-associated transmembrane protein Wnt-activated inhibitory factor 1 (Waif1/5T4) interferes with Wnt/β-catenin signaling and concomitantly activates noncanonical Wnt pathways. Waif1 inhibits β-catenin signaling in zebrafish and Xenopus embryos as well as in mammalian cells, and zebrafish waif1a acts as a direct feedback inhibitor of wnt8-mediated mesoderm and neuroectoderm patterning during zebrafish gastrulation. Waif1a binds to the Wnt coreceptor LRP6 and inhibits Wnt-induced LRP6 internalization into endocytic vesicles, a process that is required for pathway activation. Thus, Waif1a modifies Wnt/β-catenin signaling by regulating LRP6 subcellular localization. In addition, Waif1a enhances β-catenin-independent Wnt signaling in zebrafish embryos and Xenopus explants by promoting a noncanonical function of Dickkopf1. These results suggest that Waif1 modulates pathway selection in Wnt-receiving cells., (Copyright © 2011 Elsevier Inc. All rights reserved.)
- Published
- 2011
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18. Malondialdehyde (MDA) and protein carbonyl (PCO) levels as biomarkers of oxidative stress in subjects with familial hypercholesterolemia.
- Author
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Pirinccioglu AG, Gökalp D, Pirinccioglu M, Kizil G, and Kizil M
- Subjects
- Adolescent, Adult, Biomarkers blood, Case-Control Studies, Child, Female, Humans, Hyperlipoproteinemia Type II blood, Male, Malondialdehyde blood, Young Adult, Hyperlipoproteinemia Type II metabolism, Hyperlipoproteinemia Type II pathology, Malondialdehyde metabolism, Oxidative Stress, Protein Carbonylation
- Abstract
Objective: Familial hypercholesterolemia (FH) is clinically characterized by elevated total and low-density lipoprotein (LDL) cholesterol levels in plasma, which has high risk for developing atherosclerosis. Increased oxidative stress (OS) and FH have been related to atherosclerosis. The study aims to evaluate oxidative stress in patients with hypercholesterolemia by measuring lipid peroxidation and protein carbonyl (PCO) levels in these patients. PCO in these patients may provide a new diagnostic biomarker for oxidative damage in atherosclerosis., Design and Method: Total cholesterol (Tc), low-density lipoprotein-cholesterol (LDL-c), triglyceride (TG), high-density lipoprotein-cholesterol (HDL-c), lipoprotein(a) (Lp-a) levels and carotid intima-media thickness were measured to evaluate characteristics of patients (11 homozygous and 25 heterozygous) with FH. 25 age-gender-BMI matched healthy control subjects were included in the study for comparison., Results: MDA and PCO levels were significantly higher in homozygous patients compared with those of heterozygous and controls and it was found that they are positively correlated with LDL-c, Tc, Lp-a and IMT while negatively correlated with HDL-c. The heterozygous group also had significantly higher MDA and PCO levels compared with controls., Conclusion: The data obtained could be important for understanding the alterations presented by FH and could be related to their increased risk of developing atherosclerosis. To our knowledge, measurements of PCO in patients with FH are not recorded before and this may be used as a biomarker for protein oxidation, which may play a role in the increased cardiovascular risk of patients with FH., (Copyright © 2010 Elsevier Inc. All rights reserved.)
- Published
- 2010
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19. Is there a role for antioxidants in prevention of pulmonary hypoplasia in nitrofen-induced rat model of congenital diaphragmatic hernia?
- Author
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Cigdem MK, Kizil G, Onen A, Kizil M, Nergiz Y, and Celik Y
- Subjects
- Acetylcysteine therapeutic use, Animals, Disease Models, Animal, Drug Synergism, Female, Fetus drug effects, Free Radical Scavengers therapeutic use, Hernia, Diaphragmatic chemically induced, Hernias, Diaphragmatic, Congenital, Lipid Peroxidation drug effects, Lung drug effects, Male, Maternal-Fetal Exchange, Pesticides, Phenyl Ethers administration & dosage, Pregnancy, Proteins drug effects, Proteins metabolism, Rats, Rats, Sprague-Dawley, Thiobarbituric Acid Reactive Substances metabolism, Antioxidants therapeutic use, Ascorbic Acid therapeutic use, Hernia, Diaphragmatic complications, Lung Diseases prevention & control, Vitamin E therapeutic use
- Abstract
Background/purpose: Many studies suggest a role for antioxidants in the prevention of lung hypoplasia in nitrofen-induced rat models with congenital diaphragmatic hernia (CDH). This study investigates the oxidative status and the histological outcome of prenatal administration of vitamins E and C with synergistic effect, and effect of N-acetylcysteine (NAC) to improve lung maturation of nitrofen-induced rats., Methods: CDH was induced by maternal administration of a single oral dose of nitrofen on day 9.5 of gestation, and the Sprague-Dawley rats were randomly divided into five groups: nitrofen (N), nitrofen + vitamin C (NC), nitrofen + vitamin E (NE), nitrofen + vitamin C + vitamin E (NCE) and nitrofen + NAC (NNAC). A control group in which only vehicle was administered was included. Cesarean section was performed on day 21. Body weight (BW) and total lung weight (LW) of all fetuses with CDH were recorded; lung histological evaluation was performed, and protein content of lungs, determination of thiobarbituric acid reactive substances, and the protein carbonyls in tissue samples were determined., Results: A total of 133 rat fetuses with CDH were investigated. The body weight and the lung weight of fetuses of all groups that were exposed to nitrofen were significantly decreased than of the control group (P < 0.05). The animals exposed to nitrofen with different antioxidants showed increased protein levels in lung tissue. However, in the NCE and the NNAC groups, protein levels were significantly increased than in the others. Malondialdehyde levels significantly decreased in the NCE and the NNAC groups when compared with the NC and the NE groups. In addition, the NCE and NNAC groups decreased protein oxidation to control levels, and no significant difference was observed between control and these two antioxidants groups. The N, NC, NE and NNAC groups showed minimal improvement in lung histology; the NCE groups showed the most improvement in lung histology when compared with the other nitrofen plus antioxidant groups., Conclusion: Prenatal administration of NAC and vitamin E in combination with vitamin C represented the best effects to avoid oxidative damage and protein content of the lungs in rat pups with CDH at birth.
- Published
- 2010
- Full Text
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20. Germ cells in the crustacean Parhyale hawaiensis depend on Vasa protein for their maintenance but not for their formation.
- Author
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Ozhan-Kizil G, Havemann J, and Gerberding M
- Subjects
- 3' Untranslated Regions, Animals, Biological Evolution, Cell Lineage, Crustacea, DEAD-box RNA Helicases genetics, RNA, Messenger analysis, Stem Cells cytology, DEAD-box RNA Helicases physiology, Germ Cells cytology
- Abstract
Germ cells are a population of cells that do not differentiate to form somatic tissue but form the egg and sperm that ensure the reproduction of the organism. To understand how germ cells form, holds a key for identifying what sets them apart from all other cells of the organism. There are large differences between embryos regarding where and when germ cells form but the expression of Vasa protein is a common trait of germ cells. We studied the role of vasa during germ cell formation in the crustacean Parhyale hawaiensis. In a striking difference to the posterior specification of the group of germ cells in the arthropod model Drosophila, all germ cells in Parhyale originate from a single germ line progenitor cell of the 8-cell stage. We found vasa RNA ubiquitously distributed from 1-cell to 16-cell stage in Parhyale and localized to the germ cells from 32-cell stage onwards. Localization of vasa RNA to the germ cells is controlled by its 3'UTR and this could be mimicked by fluorescently labeled 3'UTR RNA. Vasa protein was first detectable at the 100-cell stage. MO-mediated inhibition of vasa translation caused germ cells to die after gastrulation. This means that in Parhyale Vasa protein is not required for the initial generation of the clone of germ cells but is required for their subsequent proliferation and maintenance. It also means that the role of vasa changed substantially during an evolutionary switch in the crustaceans by Parhyale from the specification of a group of germ cells to that of a single germ line progenitor. This is the first functional study of vasa in an arthropod beyond Drosophila.
- Published
- 2009
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21. Comparison of the effects of maternal protein malnutrition and intrauterine growth restriction on redox state of central nervous system in offspring rats.
- Author
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Tatli M, Guzel A, Kizil G, Kavak V, Yavuz M, and Kizil M
- Subjects
- Aging, Animals, Body Weight, Brain growth & development, Catalase metabolism, Female, Organ Size, Oxidation-Reduction, Pregnancy, Rats, Brain enzymology, Fetal Growth Retardation etiology, Pregnancy Complications physiopathology, Protein-Energy Malnutrition physiopathology, Superoxide Dismutase metabolism
- Abstract
Both maternal protein malnutrition and intrauterine growth restriction (IUGR) have deleterious effects on brain development, but a comparison of these effects has not been previously reported. The objectives of this study were to investigate and compare the effects of both factors on the oxidative status of the central nervous system (CNS), including the spinal cord, in offspring rats. We evaluated various parameters of oxidative status and antioxidant enzyme activities of superoxide dismutase and catalase (CAT) in different regions of the CNS from 60-day-old rats subjected to prenatal and postnatal protein restrictions [middle protein restriction 12%, severe protein restriction (SPR) 4%] or IUGR produced by uterine artery ligation. Furthermore, we compared these study groups to each other and to control rats fed an isocaloric 24% protein diet. Results were analyzed using one-way ANOVA followed by Tukey's post hoc test. Both protein restrictions and IUGR altered various parameters of oxidative status. In all evaluated structures, protein restrictions resulted in increases in thiobarbituric acid-reactive substances level and index of lipid peroxidation (P<0.001), and in decreases in antioxidant enzyme activities (P<0.005). IUGR also increased lipid peroxidation levels in the blood samples (P<0.04) and protein oxidative damage in the cerebellum and cerebral cortex (P<0.005); however, no effects were detected on the spinal cord. The greatest decrease in CAT activity was in the cerebellum of rats fed with SPR diet (P<0.001). This study suggests that not only severe but also middle protein malnutrition have deleterious effects on CNS structures, including the spinal cord. Protein restriction has a greater effect on the redox state of the CNS than IUGR.
- Published
- 2007
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22. The effect of ethanol extract of Hypericum lysimachioides on lipid profile in hypercholesterolemic rabbits and its in vitro antioxidant activity.
- Author
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Hakimoğlu F, Kizil G, Kanay Z, Kizil M, and Isi H
- Subjects
- Animals, Antioxidants analysis, Antioxidants pharmacology, Aorta drug effects, Aorta pathology, Cholesterol, LDL blood, Diet, Atherogenic, Disease Models, Animal, Liver drug effects, Liver pathology, Male, Plant Extracts analysis, Rabbits, Cholesterol, HDL blood, Cholesterol, HDL drug effects, Cholesterol, LDL drug effects, Hypercholesterolemia drug therapy, Hypericum chemistry, Lipid Peroxidation drug effects, Plant Extracts pharmacology, Thiobarbituric Acid Reactive Substances analysis
- Abstract
Hypercholesterolemia, high cholesterol diet and oxidative stress increase serum total cholesterol and LDL cholesterol levels resulting in increased risk for development of atherosclerosis. Antioxidants play an important role in inhibiting and scavenging radicals, thus providing protection to humans against infectious and degenerative diseases. Literature shows that the antioxidant activity is high in medicinal plants. Realizing the fact that, this study was carried out to determine the effect of ethanol extract of Hypericum lysimachioides Boiss var lysimachioides (Guttifera) on serum lipid levels and serum lipid peroxidation in hypercholesterolemic rabbits. The rabbits were divided into four groups and these groups were fed with diets containing standard laboratory diet (Group I), standard laboratory diet and ethanol extracts of H. lysimachioides (HL) (50mg/kg body weight) (Group II), standard laboratory diet, ethanol extracts of HL (50mg/kg body weight) and cholesterol (100mg/kg body weight) (Group III), and finally standard laboratory diet and cholesterol (100mg/kg body weight) (Group IV), for 5 weeks. Feeding cholesterol increased serum cholesterol and LDL cholesterol levels significantly in Group IV as compared to the other groups. Ethanol extract of HL with high cholesterol diet significantly lowered LDL cholesterol and total cholesterol levels in the rabbits of Group III as compared to the Group IV. The level of serum triacylglycerol was found to be similar to all comparison groups. HDL cholesterol levels were also increased significantly in Groups II and III as compared to Group IV. Statistically significant difference was found in Group IV as compared to all other groups. The ethanol extract of HL with high cholesterol diet significantly lowered the serum MDA levels in the rabbits of Group III compared to the Group IV. The histopathological findings confirmed that the ethanol extract of HL restrained the progression of the hydropic degeneration and fatty changes in the liver and some atherosclerotic lesions in the aorta. The in vitro antioxidant activities of ethanol extract of HL was also evaluated. The free radical-scavenging properties of HL (IC(50)=28 microg/ml) were studied using 1,1-diphenyl-2-picrylhydrazyl (DPPH) assay system. Since plant phenolic compound is one of the phytochemicals possessing radical scavenging activity, the amount of total phenolic compound was also determined in ethanol extract of HL and total phenolic content of one-milligram HL ethanol extract was equivalent to 307 microg of gallic acid. Total antioxidant activity of ethanol extract of HL was tested by using ferric thiocyanate (FTC) and thiobarbituric acid (TBA) methods. Antioxidative activities of ethanol extract of HL was found to be comparable with Vitamin E. In conclusion, the use of this extract could be useful in the management of cardiovascular disease in which atherosclerosis is important.
- Published
- 2007
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23. Compositions and antimicrobial activities of the essential oils of two Hypericum species from Turkey.
- Author
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Toker Z, Kizil G, Ozen HC, Kizil M, and Ertekin S
- Subjects
- Bacillus drug effects, Candida albicans drug effects, Escherichia coli drug effects, Microbial Sensitivity Tests, Plant Oils chemistry, Plant Oils pharmacology, Plants, Medicinal chemistry, Pseudomonas aeruginosa drug effects, Staphylococcus aureus drug effects, Streptococcus pyogenes drug effects, Turkey, Anti-Infective Agents pharmacology, Hypericum chemistry, Oils, Volatile chemistry, Oils, Volatile pharmacology
- Abstract
The chemical compositions of essential oils obtained from Hypericum hyssopifolium var. microcalycinum and Hypericum lysimachioides var. lysimachioides were analysed by using GC and GC-MS. Caryophyllene oxide was found to be the major component. The essential oils of both Hypericum species showed antimicrobial activity against nine microorganism at a concentration of 60 to 80 microg/ml.
- Published
- 2006
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24. The antimicrobial activity of essential oils of Hypericum scabrum, Hypericum scabroides and Hypericum triquetrifolium.
- Author
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Kizil G, Toker Z, Ozen HC, and Aytekin C
- Subjects
- Anti-Infective Agents administration & dosage, Anti-Infective Agents therapeutic use, Antifungal Agents administration & dosage, Antifungal Agents pharmacology, Antifungal Agents therapeutic use, Candida albicans drug effects, Flowers, Humans, Microbial Sensitivity Tests, Plant Leaves, Plant Oils administration & dosage, Plant Oils therapeutic use, Plant Stems, Anti-Infective Agents pharmacology, Gram-Negative Bacteria drug effects, Gram-Positive Bacteria drug effects, Hypericum, Phytotherapy, Plant Oils pharmacology
- Abstract
The essential oils of Hypericum scabrum, Hypericum scabroides and Hypericum triquetrifolium were studied for the first time for their antimicrobial activity against nine organisms. All the essential oils exhibited some broad spectrum antibacterial activity, at a concentration of 80 microg/mL. The essential oils of Hypericum species showed antibacterial activity against the tested organisms and a yeast., (Copyright 2004 John Wiley & Sons, Ltd.)
- Published
- 2004
- Full Text
- View/download PDF
25. Antimicrobial activity of the resins obtained from the roots and stems of Cedrus libani and Abies cilicica.
- Author
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Kizil M, Kizil G, Yavuz M, and Aytekin C
- Subjects
- Anti-Bacterial Agents, Antifungal Agents pharmacology, Bacteria growth & development, Candida albicans growth & development, Humans, Microbial Sensitivity Tests, Plant Extracts pharmacology, Plant Roots chemistry, Plant Stems chemistry, Abies chemistry, Anti-Infective Agents pharmacology, Bacteria drug effects, Candida albicans drug effects, Cedrus chemistry, Resins, Plant pharmacology
- Abstract
The antimicrobial activity of the ethanol extract of resins obtained from the roots and stems of Cedrus libani and Abies cilicica was investigated using a disc diffusion method. Results revealed that crude extracts of the resins of both plants are highly effective against tested microorganisms by preventing their growth to a greater extent.
- Published
- 2002
26. Detection and characterisation of the genes encoding glyoxalase I and II from Neisseria meningitidis.
- Author
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Kizil G, Wilks K, Wells D, and Ala'aldeen DAA
- Subjects
- Amino Acid Sequence, Genomic Library, Lactoylglutathione Lyase isolation & purification, Molecular Sequence Data, Neisseria meningitidis enzymology, Sequence Homology, Amino Acid, Thiolester Hydrolases isolation & purification, Genes, Bacterial, Lactoylglutathione Lyase genetics, Neisseria meningitidis genetics, Thiolester Hydrolases genetics
- Abstract
Glyoxalase enzymes I and II are involved in a detoxification process consisting of conversion of reactive dicarbonyl compounds (e.g., methylglyoxal) to less reactive hydroxy acids. The structural gene for meningococcal glyoxalase I (gloA) was identified by screening an expression library with a rabbit antiserum. The meningococcal gloA gene consisted of 138 deduced amino acids, with a calculated mol. wt of 15.7 kDa. The DNA and deduced protein sequence of gloA was compared to known sequences of glyoxalase I enzymes and showed high homology with gloA of several eukaryotic and prokaryotic species. Insertion of a gloA-containing plasmid in Escherichia coli increased the host organism's tolerance to methylglyoxal from <2 mM to >4 mM, thus demonstrating its functional identity. A databank search also revealed the presence of a putative gloB gene, encoding glyoxalase II (GlxII), in the recently released genomic sequences of Neisseria meningitidis and N. gonorrhoeae.
- Published
- 2000
- Full Text
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