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Despite its biogeographical uniqueness, where two vast savanna regions are separated by the Afromontane mosaic vegetation, there is a significant lack of small mammal sampling in the Tigray region of Ethiopia. Leveraging all our available data on rodents and shrews in the region, we tested the hypothesis that the Afromontane mosaic vegetation in the highlands acts as a barrier to gene flow between taxa found in the Somali-Masai and Sudanian savanna in the southeast and western lowland parts of the region, respectively. Morphological and DNA sequence analysis confirmed the presence of 23 species of small rodents and shrews in the region. We recorded 18 of these species in the Afromontane mosaic vegetation, seven species in the Sudanian savanna, and four species in the Somali-Masai savanna. Notably, the fauna of Sudanian savanna was strikingly different from that of the Somali-Masai savanna at both intraspecific and interspecific level, suggesting northern Ethiopian highlands as very strong biogeographic barrier for taxa adapted to arid lowlands. However, the reported species diversity remains provisional, and additional sampling from unexplored areas is needed. Furthermore, some of the reported taxa, in this study, such as Mus cf. tenellus, Crocidura cf. fuscomurina, Dendromus sp. indet. 2, and Otomys cf. cheesmani, require detailed taxonomic investigation and may represent new species. A robust understanding of the taxonomic diversity and distribution of the small mammals in the region is crucial for effective conservation planning as well as for addressing practical questions related to rodents, such as in public health and pest management.

Storage pests are a major concern to smallholder farmers in Africa south of the Sahara since their livelihoods heavily depend on subsistence agriculture. These farmers depend mainly on traditional ...

In 2012, Tigray orthohantavirus was discovered in Ethiopia, but its seasonal infection in small mammals, and whether it poses a risk to humans was unknown. The occurrence of small mammals, rodents and shrews, in human inhabitations in northern Ethiopia is affected by season and presence of stone bunds. We sampled small mammals in two seasons from low- and high-density stone bund fields adjacent to houses and community-protected semi-natural habitats in Atsbi and Hagere Selam, where Tigray orthohantavirus was first discovered. We collected blood samples from both small mammals and residents using filter paper. The presence of orthohantavirus-reactive antibodies in blood was then analyzed using immunofluorescence assay (human samples) and enzyme linked immunosorbent assays (small mammal samples) with Puumala orthohantavirus as antigen. Viral RNA was detected by RT-PCR using small mammal blood samples. Total orthohantavirus prevalence (antibodies or virus RNA) in the small mammals was 3.37%. The positive animals were three Stenocephalemys albipes rats (prevalence in this species = 13.04%). The low prevalence made it impossible to determine whether season and stone bunds were associated with orthohantavirus prevalence in the small mammals. In humans, we report the first detection of orthohantavirus-reactive IgG antibodies in Ethiopia (seroprevalence = 5.26%). S. albipes lives in close proximity to humans, likely increasing the risk of zoonotic transmission.

Despite the high geoheritage value of caves and karsts, northern Ethiopia’s largest cave at Zeyi (13.5586°N, 39.1454°E) in the Dogu’a Tembien district has received little attention so far. We have studied its geological, geomorphic, socio-cultural and historical dimensions in a holistic way. The basal member of the Antalo Limestone, in which the Zeyi cave is located, consists of grainstone and wackestone with subordinate marly interlayers. Over a length of 364 m, the oval-shaped gallery displays stalagmites, stalactites, five columns, dissolution holes (“bell-holes”) following joints, stalagmitic floors and other concretions or speleothems. In the absence of any dating of the cave, we contrasted its elevation above the current local base level with known average incision rates of the northern Ethiopian highlands to reconstruct its age, which was calculated as at least 2 to 4 million years. The palaeo-environmental information that is archived in the Zeyi cave sediment would hence cover the Pleistocene. The graves in the sediment at the bottom of the Zeyi cave further indicate that the place could be an ancient burial site, which gives scope for archaeological research. Zeyi boosts a unique combination of abiotic, biotic and cultural components: the nineteenth c. church under the overhanging cliff; the unique cave; the speleothems, cliffs and gorges; and the cave’s bat colony which has been genetically confirmed to be composed of three syntopically roosting species. Accounting for a good balance between cave research, community-based geotourism, geoconservation and biodiversity conservation, the Zeyi cave has strong credentials to become a top geotouristic site in northern Ethiopia. However, major work needs to be done, including granting access for women and organising community-based geotourism.

The abundance and microhabitat use of rodents were investigated in four different habitats: two rain-fed crop fields with differing stone bund density, an irrigated field and bushland. A total of 444 individual small mammals belonging to six rodent and one shrew species were recorded in trapping grids and line transects. Of these, 230 individuals (52%) belonged to three pest rodent species of crop fields in northern Ethiopia: Stenocephalemys albipes (65%), Mastomys awashensis (25%) and Arvicanthis niloticus (10%). Population abundance of the three species was higher in the early dry season compared to the rainy season. While the bushland was significantly (p < 0.05) favoured by S. albipes and M. awashensis in both seasons, the irrigated field was preferred by Arvicanthis niloticus in the early dry season. In the early dry season, the microhabitat use of A. niloticus was strongly associated with the type of ground cover (herb) (R2adj = 0.152, P < 0.01). While M. awashensis was associated with vegetation density (R2adj = 0.13, P < 0.01), S. albipes was associated with vegetation cover (R2adj = 0.102, P < 0.001). The findings indicate that co-occurring pest rodent species prefer different microhabitats. Understanding their co-occurrence particularly in crop fields is vital for crop protection as they are known serious agricultural pests in northern Ethiopia.

Tropical forest ecosystems harbor several species of small mammals. Diversity and abundance of small mammals in these forests reflect the quality and diversity of the ecosystems. The current study was carried out to assess abundance and species composition of small mammals (rodents and shrews) in three habitat types (Pterolobium, Juniperus and Cadia habitats) in Hugumburda forest, a dry afromontane forest in the Tigray region of North Ethiopia. The habitat types were selected based on the floristic compositions (plant species diversity) and level of human disturbance. All together, 179 individual small mammals belonging to seven rodent and one insectivore species were captured in 4,320 trap nights. The rodent species, with their relative abundance, were Stenocephalemys albipes, 55 (30.7%); Mastomys awashensis, 53 (29.6%); Arvicanthis dembeensis, 26 (14.5%); Lophuromys flavopunctatus, 22 (12.3%); Mus (Nannomys) setulosus, 14 (7.8%); Arvicanthis abysinicus 4 (2.2%); Dendromus mystacalis, 3 (1.7%) and the insectivore Crocidura olivieri, 2 (1.1%). There was significant variation in the small mammal abundance among the habitat types (χ2=29.45, P= 0.009), with more individuals caught in Pterolobium habitat, which has relatively highest plant species composition and lowest human disturbance than the other two habitats. The highest small mammal species diversity was also recorded in this habitat (H’=1.76). Vegetation diversity and level of human interference are likely the major factors affecting small mammal abundance and composition in Hugumburda forest. Key words: Small mammals, Hugumburda forest, human disturbance, diversity indices.

The ornithological role of lake Hashengie and 10 selected reservoirs have been studied from January to February, 2012 in Tigray, Ethiopia. Birds were surveyed using total and Block count methods from suitable vantage points. Bird species diversity, dominance, and vegetation cover were estimated. A total of 22,845 birds of 67 species belonging to 19 families were recorded. Maximum numbers of species were recorded in Lake Hashengie (65) followed by Hzaeti Wedi Cheber (38) and minimum was recorded in Mai Della reservoir (15). Significant difference in bird species were recorded between the two sites which have maximum number of bird species (Mann-Whitney Test: W = 778.5, P = 0.00). The migratory status of bird species showed that 47 (70 %) were migrants and the rest 20 (29%) were residents. Vulnerable species, Ferruginous duck, Aythya nyroca, in Lake Hashengie and globally near threatened species, Rouget’s rail Rougetius rougetii in Teghane and Ruba Feleg reservoirs were recorded. The highest vegetation cover (65%) was estimated in Tsnkanet. We conclude that the reservoirs and the natural lake intended for irrigation harbor a number of bird species and are an important foraging, breeding, roosting and nesting grounds for the birds. Key words: Migratory, reservoirs, residential, Hashengie, threatened, vulnerable, Tigray, Ethiopia.

Fragmented sacred church forests in Ethiopia contribute about 5% of the vegetation cover in the country. These isolated forests harbour a variety of fauna and flora, including several indigenous species. A number of species in these forests however, are suffering from the effects of isolation and fragmentations which are poorly investigated issues. We studied population size and diet of bush hyrax, Heterohyrax brucei , in the isolated Romanat Michael church forest in Northern Ethiopia. The overall population size of the bush hyrax was about 20 individuals. The population suffered high adult mortality during the post-rainy season, between October and November. This season is also marked with the appearance of new pups. The bush hyraxes were observed predominantly browsing on the leaves, shoots, and flowers of 16 different plant species. There is a growing concern that the population may become locally extinct from demographic and/or genetic stochastic factors. We recommend immediate conservation measures to save the population from potential future factors causing an increase in the already high mortality rate. Keywords : Population size, Church forest, Diet, Heterohyrax brucei , Ethiopia.

Context. Reproduction and survival are two of the most important demographic factors that play a major role in changing population abundances of pest species over time and space, solid understanding of which is a useful input to forecast future population changes for proactive management. Aims. We investigated the effects of rainfall, crop-development stage and density of stone bunds on reproductive patterns, and the effects of stone-bund density and sex on survival probabilities of two widespread rodent species (Mastomys awashensis and Arvicanthis dembeensis) in Ethiopian highlands. Methods. Rodent population dynamics were monitored from April 2007 to February 2011, using capture-mark-recapture (CMR) technique in four 60 x 60 m permanent square grids for four consecutive cropping seasons. Two of the grids represented fields with low stone-bund density (LSBD, similar to 15m apart) and the other two represented fields with high stone-bund density (HSBD, similar to 10m apart). Key results. Reproduction was seasonal, commencing during the wet season following the rain and continuing through the early dry season. We found an increase in the abundance of reproductively active female individuals of both species towards the milky and fruiting crop stages and around harvest period. We found no strong difference in survival probability between the two rodent species with variation in stone-bund density and sex. Conclusion. Stone bunds play a minor role in the reproduction and survival of the rodent species at the observed abundances. Implications. In terms of pest management, the high local survival rates estimated for both rodent species matter more than survival differences owing to variations in stone-bund density and sex.

Tropical inland lakes harbour a variety of waterbirds and provide a wintering habitat for Palaearctic and other migratory birds. However, the importance of the lakes as a temporary site for migrant bird populations has not been adequately studied. The point count method was used to study waterbird species diversity and abundance in Lake Ashenge, in the semi-arid region of northern Ethiopia, with the main aim to underscore the lake's importance as a stop-over site for Palaearctic and other migratory birds. A total of 36 species belonging to 14 waterbird families were encountered. Fifteen of the species were resident birds, including the endemic Wattled Ibis (Bostrychia carunculata), and 14 of the species were Palaearctic migrants, including the globally Near-Threatened Ferruginous Duck (Ayithya nyroca) and Maccoa Duck (Oxyura maccoa). Significant temporal variation in diversity and abundance was observed during the study period; diversity was highest (Shannon-Wiener H′ = 1.98) in the dry season (December/J...

Background Rodents of the genus Mus represent one of the most valuable biological models for biomedical and evolutionary research. Out of the four currently recognized subgenera, Nannomys (African pygmy mice, including the smallest rodents in the world) comprises the only original African lineage. Species of this subgenus became important models for the study of sex determination in mammals and they are also hosts of potentially dangerous pathogens. Nannomys ancestors colonized Africa from Asia at the end of Miocene and Eastern Africa should be considered as the place of their first radiation. In sharp contrast with this fact and despite the biological importance of Nannomys, the specimens from Eastern Africa were obviously under-represented in previous studies and the phylogenetic and distributional patterns were thus incomplete. Results We performed comprehensive genetic analysis of 657 individuals of Nannomys collected at approximately 300 localities across the whole sub-Saharan Africa. Phylogenetic reconstructions based on mitochondrial (CYTB) and nuclear (IRBP) genes identified five species groups and three monotypic ancestral lineages. We provide evidence for important cryptic diversity and we defined and mapped the distribution of 27 molecular operational taxonomic units (MOTUs) that may correspond to presumable species. Biogeographical reconstructions based on data spanning all of Africa modified the previous evolutionary scenarios. First divergences occurred in Eastern African mountains soon after the colonization of the continent and the remnants of these old divergences still occur there, represented by long basal branches of M. (previously Muriculus) imberbis and two undescribed species from Ethiopia and Malawi. The radiation in drier lowland habitats associated with the decrease of body size is much younger, occurred mainly in a single lineage (called the minutoides group, and especially within the species M. minutoides), and was probably linked to aridification and climatic fluctuations in middle Pliocene/Pleistocene. Conclusions We discovered very high cryptic diversity in African pygmy mice making the genus Mus one of the richest genera of African mammals. Our taxon sampling allowed reliable phylogenetic and biogeographic reconstructions that (together with detailed distributional data of individual MOTUs) provide a solid basis for further evolutionary, ecological and epidemiological studies of this important group of rodents. Electronic supplementary material The online version of this article (doi:10.1186/s12862-014-0256-2) contains supplementary material, which is available to authorized users.

More than 500 small mammals were trapped at 3 localities in northern Ethiopia to investigate Bartonella infection prevalence and the genetic diversity of the Bartonella spp. We extracted total DNA from liver samples and performed PCR using the primers 1400F and 2300R targeting 852 bp of the Bartonella RNA polymerase beta subunit (rpoB) gene. We used a generalized linear mixed model to relate the probability of Bartonella infection to species, season, locality, habitat, sex, sexual condition, weight, and ectoparasite infestation. Overall, Bartonella infection prevalence among the small mammals was 34.0%. The probability of Bartonella infection varied significantly with species, sex, sexual condition, and some locality, but not with season, elevation, habitat type, animal weight, and ectoparasite infestation. In total, we found 18 unique Bartonella genotypes clustered into 5 clades, 1 clade exclusively Ethiopian, 2 clades clustered with genotypes from central and eastern Africa, and the remaining 2 clades clustered with genotypes and species from Africa and Asia. The close relatedness of several of our Bartonella genotypes obtained from the 3 dominant rodent species in Tigray with the pathogenic Bartonella elizabethae from Rattus spp. in Asia indicates a potential public health threat.

We studied associations between rodents and their arthropod ectoparasites in crop fields and household compounds in the highlands of Tigray, Northern Ethiopia. Ectoparasite infestation indices, such as percent infestation, mean abundance, prevalence and host preferences, were calculated for each taxon. In total, 172 rodents from crop fields and 97 from household compounds were trapped. Rodent species and numbers trapped from the crop fields and household compounds were Mastomys awashensis (Lavrenchenko, Likhnova & Baskevich, 1998) (88 and 44), Arvicanthis dembeensis (Ruppel, 1842) (63 and 37) and Acomys sp. (21 and 16), respectively. A total of 558 insects and acarids (belonging to 11 taxa) were recovered from the rodents trapped in the crop fields, and 296 insects and acarid (belonging to 6 taxa) from the rodents trapped in the household compounds. Approximately 66% of the rodents trapped from the crop fields and 47% of those trapped from the household compounds were infested with ectoparasites. Laelaps sp. (64.9%) and Xenopsylla sp. (20.6%) comprised the highest proportion of the ectoparasites recovered in the crop fields, and the same ectoparasites, but in reverse order, comprised the highest proportions in the household compounds (Xenopsylla [50.3%] and Laelaps sp. [29%]). Our study revealed that crop fields and household compounds in the highlands share similar rodents and several ectoparasites. Furthermore, at least 1 of the rodent species and some of the ectoparasites identified in this study were reported to have posed medical and veterinary threats in other parts of Ethiopia and neighboring countries.

A farmers' knowledge, attitude and practice (KAP) survey was conducted in the highlands of Tigray, northern Ethiopia, to better understand rodent damage and rodent management from the farmers' perspective. Farmers ( n = 191) from Dogu'a Temben district, were interviewed using a semi-structured questionnaire. The large majority of the farmers stated that rodents are the main pests in crop fields (92.1%) and storage (88.5%). The farmers (64.2%) reported they experienced 100–500 kg ha −1 damage in crop fields, which is equivalent to 8.9–44.7% loss in annual production. There was some overlap between the most common crops grown in the highlands and the most common crops susceptible to rodent attack. Farmers identified barley as the crop most susceptible to rodent attack (76.4%) and the booting stage as the crop developmental stage with the highest rodent abundance and damage. Rodenticide application was the most commonly practiced management strategy in crop fields (51.8%); in storage, farmers mainly keep domestic cats around granaries (80.6%). We recommend a reduction in reliance on chemical rodenticide in crop fields and a shift to a more sustainable rodent management approach to reduce rodent numbers and damage.