25 results on '"Kirkup, D"'
Search Results
2. Plant Collecting Spread and Densities: Their Potential Impact on Biogeographical Studies in Thailand
- Author
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Parnell, J. A. N., Simpson, D. A., Moat, J., Kirkup, D. W., Chantaranothai, P., Boyce, P. C., Bygrave, P., Dransfield, S., Jebb, M. H. P., Macklin, J., Meade, C., Middleton, D. J., Muasya, A. M., Prajaksood, A., Pendry, C. A., Pooma, R., Suddee, S., and Wilkin, P.
- Published
- 2003
3. The structural basis of pollination in African Loranthaceae
- Author
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Kirkup, D. W.
- Subjects
580 ,Mistletoe - Published
- 1993
4. Elliptic Fourier Analysis of leaf outlines in five species of Heteropsis (Araceae) from the Reserva Florestal Adolpho Ducke, Manaus, Amazonas, Brazil
- Author
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Soares, M. L. C., Mayo, S. J., Gribel, R., and Kirkup, D.
- Published
- 2011
5. Elliptic Fourier Analysis of leaf outline shape in forest fragment populations of Anthurium sinuatum and A. pentaphyllum (Araceae) from Northeast Brazil
- Author
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Andrade, I. M., Mayo, S. J., Kirkup, D., and Van den Berg, C.
- Published
- 2010
6. Alpha E-Taxonomy: Responses from the Systematics Community to the Biodiversity Crisis
- Author
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Mayo, S. J., Allkin, R., Baker, W., Blagoderov, V., Brake, I., Clark, B., Govaerts, R., Godfray, C., Haigh, A., Hand, R., Harman, K., Jackson, M., Kilian, N., Kirkup, D. W., Kitching, I., Knapp, S., Lewis, G. P., Malcolm, P., von Raab-Straube, E., Roberts, D. M., Scoble, M., Simpson, D. A., Smith, C., Smith, V., Villalba, S., Walley, L., and Wilkin, P.
- Published
- 2008
7. Comparative Morphology of Populations of Monstera Adans. (Araceae) from Natural Forest Fragments in Northeast Brazil Using Elliptic Fourier Analysis of Leaf Outlines
- Author
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Andrade, I. M., Mayo, S. J., Kirkup, D., and Van Den Berg, C.
- Published
- 2008
8. Brunei and biodiversity — the Kew-Brunei checklist project
- Author
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Coode, M. J. E., Dransfield, J., Kirkup, D. W., Dumont, H. J., editor, Werger, M. J. A., editor, Edwards, D. S., editor, Booth, W. E., editor, and Choy, S. C., editor
- Published
- 1996
- Full Text
- View/download PDF
9. A Preliminary Study of Genetic Variation in Populations of Monstera adansonii var. klotzschiana (Araceae) from North-East Brazil, Estimated with AFLP Molecular Markers
- Author
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ANDRADE, I. M., MAYO, S. J., VAN DEN BERG, C., FAY, M. F., CHESTER, M., LEXER, C., and KIRKUP, D.
- Published
- 2007
10. Increasing the utility of the regional African Floras
- Author
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Kirkup, D. W., primary, Malcolm, P., additional, and Paton, A., additional
- Published
- 2015
- Full Text
- View/download PDF
11. The global spectrum of plant form and function
- Author
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Díaz, S, Kattge, J, Cornelissen, JHC, Wright, IJ, Lavorel, S, Dray, S, Reu, B, Kleyer, M, Wirth, C, Colin Prentice, I, Garnier, E, Bönisch, G, Westoby, M, Poorter, H, Reich, PB, Moles, AT, Dickie, J, Gillison, AN, Zanne, AE, Chave, J, Joseph Wright, S, Sheremet Ev, SN, Jactel, H, Baraloto, C, Cerabolini, B, Pierce, S, Shipley, B, Kirkup, D, Casanoves, F, Joswig, JS, Günther, A, Falczuk, V, Rüger, N, Mahecha, MD, Gorné, LD, Díaz, S, Kattge, J, Cornelissen, JHC, Wright, IJ, Lavorel, S, Dray, S, Reu, B, Kleyer, M, Wirth, C, Colin Prentice, I, Garnier, E, Bönisch, G, Westoby, M, Poorter, H, Reich, PB, Moles, AT, Dickie, J, Gillison, AN, Zanne, AE, Chave, J, Joseph Wright, S, Sheremet Ev, SN, Jactel, H, Baraloto, C, Cerabolini, B, Pierce, S, Shipley, B, Kirkup, D, Casanoves, F, Joswig, JS, Günther, A, Falczuk, V, Rüger, N, Mahecha, MD, and Gorné, LD
- Abstract
Earth is home to a remarkable diversity of plant forms and life histories, yet comparatively few essential trait combinations have proved evolutionarily viable in today € s terrestrial biosphere. By analysing worldwide variation in six major traits critical to growth, survival and reproduction within the largest sample of vascular plant species ever compiled, we found that occupancy of six-dimensional trait space is strongly concentrated, indicating coordination and trade-offs. Three-quarters of trait variation is captured in a two-dimensional global spectrum of plant form and function. One major dimension within this plane reflects the size of whole plants and their parts; the other represents the leaf economics spectrum, which balances leaf construction costs against growth potential. The global plant trait spectrum provides a backdrop for elucidating constraints on evolution, for functionally qualifying species and ecosystems, and for improving models that predict future vegetation based on continuous variation in plant form and function.
- Published
- 2016
12. A re-examination of the life and work of A.F.G. Kerr and of his colleagues and friends
- Author
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Parnell, J. A. N., Pilla, F., Simpson, D. A., Van Welzen, P. C., Chayamarit, K., Chantaranothai, P., Boyce, P. C., Bygrave, P., Byrne, C., Chen, S., Couch, C., Curtis, T., Dransfield, S., Duyfjes, B. E. E., Eianthong, W., Esser, H. J., Grote, P. J., Hua, Z., Jebb, M. H. P., Kirkup, D. W., Loc, P. Ke, Larsen, Supree S., Macklin, J., Madern, A., Meade, C., Merklinger, F., Middleton, D. J., Moat, J., Muasya, A. M., Nakmuenwai, P., Pedersen, Henrik Ærenlund, Pendry, C. A., Prajaksood, A., Pooma, R., Preusapan, K., Puglisi, C., Sathapattayanon, A., Sukkharak, P., Staples, G., Strijk, J., Suddee, S., Sungkaew, S., Tangjitman, K., Teerwatananon, A., Tovaranonte, J., Ung, T., Blasi, A. Trias, De Wilde, W. J. J. O., Wilkin, P., Yahara, T., Parnell, J. A. N., Pilla, F., Simpson, D. A., Van Welzen, P. C., Chayamarit, K., Chantaranothai, P., Boyce, P. C., Bygrave, P., Byrne, C., Chen, S., Couch, C., Curtis, T., Dransfield, S., Duyfjes, B. E. E., Eianthong, W., Esser, H. J., Grote, P. J., Hua, Z., Jebb, M. H. P., Kirkup, D. W., Loc, P. Ke, Larsen, Supree S., Macklin, J., Madern, A., Meade, C., Merklinger, F., Middleton, D. J., Moat, J., Muasya, A. M., Nakmuenwai, P., Pedersen, Henrik Ærenlund, Pendry, C. A., Prajaksood, A., Pooma, R., Preusapan, K., Puglisi, C., Sathapattayanon, A., Sukkharak, P., Staples, G., Strijk, J., Suddee, S., Sungkaew, S., Tangjitman, K., Teerwatananon, A., Tovaranonte, J., Ung, T., Blasi, A. Trias, De Wilde, W. J. J. O., Wilkin, P., and Yahara, T.
- Abstract
Arthur Francis George Kerr's life is reviewed and related to a previously published account. Kerr's collecting activity is analysed using an expanded version of the Thai Biogeography Group's database of collections. 8,666 of the total 48,970 collections are Kerr's and 3,178 are those of his colleagues and friends. Therefore, the total number of collections made by Kerr and his acquaintances is likely to be larger and more diverse than previously believed. Mapping of these data using GIS show that Kerr's collecting activities focussed on particular regions of Thailand at particular times. Also large areas of the country remained unexplored by Kerr and his acquaintances: a pattern that, to some extent, persists to this day. The large, but dispersed, archive of Kerr's photographs, maps, living collections and correspondence indicate that he was a skilled photographer (taking at least 3,000 images), cartographer (producing many hand-drawn maps) and exceptionally acute, accurate and detailed observer (fi lling numerous notebooks and leaving other records). It is clear that digitising these collections to form an on-line dedicated website is highly desirable to further progress on the fl ora of Thailand and surrounding countries and would form an unique record of the social history of early 20thC Thailand.
- Published
- 2015
13. TRY - a global database of plant traits
- Author
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Kattge J, Díaz S, Lavorel S, Ic, Prentice, Leadley P, Bönisch G, Garnier E, Westoby M, Pb, Reich, Ij, Wright, Jhc, Cornelissen, Violle C, Sp, Harrison, Pm, Bodegom, Reichstein M, Bj, Enquist, Na, Soudzilovskaia, Dd, Ackerly, Anand M, Atkin O, Bahn M, Tr, Baker, Baldocchi D, Bekker R, Cc, Blanco, Blonder B, Wj, Bond, Bradstock R, Bunker DE, Casanoves F, Cavender-Bares J, Jq, Chambers, Fs Iii, Chapin, Chave J, Coomes D, Wk, Cornwell, Jm, Craine, Bh, Dobrin, Duarte L, Durka W, Elser J, Esser G, Estiarte M, Wf, Fagan, Fang J, Fernández-Méndez F, Fidelis A, Finegan B, Flores O, Ford H, Frank D, Gt, Freschet, Nm, Fyllas, Rv, Gallagher, Wa, Green, Ag, Gutierrez, Hickler T, Si, Higgins, Jg, Hodgson, Jalili A, Jansen S, Ca, Joly, Aj, Kerkhoff, Kirkup D, Kitajima K, Kleyer M, Klotz S, Jmh, Knops, Kramer K, Kühn I, Kurokawa H, Laughlin D, Td, Lee, Leishman M, Lens F, Lenz T, Sl, Lewis, Lloyd J, Llusià J, Louault F, Ma S, Md, Mahecha, Manning P, Massad T, Be, Medlyn, Messier J, At, Moles, Sc, Müller, Nadrowski K, Naeem S, Ülo Niinemets, Nöllert S, Nüske A, Ogaya R, Oleksyn J, Vg, Onipchenko, Onoda Y, Ordoñez J, Overbeck G, Wa, Ozinga, Patiño S, Paula S, Jg, Pausas, Peñuelas J, Ol, Phillips, Pillar V, Poorter H, Poorter L, Poschlod P, Prinzing A, Proulx R, Rammig A, Reinsch S, Reu B, Sack L, Salgado-Negret B, Sardans J, Shiodera S, Shipley B, Siefert A, Sosinski E, Soussana J, Swaine E, Swenson N, Thompson K, Thornton P, Waldram M, Weiher E, White M, White S, Sj, Wright, Yguel B, Zaehle S, Ae, Zanne, and Wirth C
- Subjects
SUB-ARCTIC FLORA ,environmental gradient ,HAWAIIAN METROSIDEROS-POLYMORPHA ,plant trait ,TROPICAL RAIN-FOREST ,Original Articles ,global analysis ,functional diversity ,OLD-FIELD SUCCESSION ,plant attribute ,vegetation model ,WIDE-RANGE ,FUNCTIONAL TRAITS ,intraspecific variation ,ddc:570 ,comparative ecology ,LEAF ECONOMICS SPECTRUM ,interspecific variation ,plant functional type ,RELATIVE GROWTH-RATE ,LITTER DECOMPOSITION RATES ,TERRESTRIAL BIOSPHERE ,database ,global change - Abstract
Plant traits – the morphological, anatomical, physiological, biochemical and phenological characteristics of plants and their organs – determine how primary producers respond to environmental factors, affect other trophic levels, influence ecosystem processes and services and provide a link from species richness to ecosystem functional diversity. Trait data thus represent the raw material for a wide range of research from evolutionary biology, community and functional ecology to biogeography. Here we present the global database initiative named TRY, which has united a wide range of the plant trait research community worldwide and gained an unprecedented buy-in of trait data: so far 93 trait databases have been contributed. The data repository currently contains almost three million trait entries for 69 000 out of the world’s 300 000 plant species, with a focus on 52 groups of traits characterizing the vegetative and regeneration stages of the plant life cycle, including growth, dispersal, establishment and persistence. A first data analysis shows that most plant traits are approximately log-normally distributed, with widely differing ranges of variation across traits. Most trait variation is between species (interspecific), but significant intraspecific variation is also documented, up to 40% of the overall variation. Plant functional types (PFTs), as commonly used in vegetation models, capture a substantial fraction of the observed variation – but for several traits most variation occurs within PFTs, up to 75% of the overall variation. In the context of vegetation models these traits would better be represented by state variables rather than fixed parameter values. The improved availability of plant trait data in the unified global database is expected to support a paradigm shift from species to trait-based ecology, offer new opportunities for synthetic plant trait research and enable a more realistic and empirically grounded representation of terrestrial vegetation in Earth system models.
- Published
- 2011
14. TRY: a global database of plant traits
- Author
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Kattge, J., Diaz, S., Lavorel, S., Prentice, I. C., Leadley, P., Bonisch, G., Garnier, E., Westoby, M., Reich, P. B., Wright, I. J., Cornelissen, J. H. C., Violle, C., Harrison, S. P., van Bodegom, P. M., Reichstein, M., Soudzilovskaia, N. A., Ackerly, D. D., Anand, M., Atkin, O., Bahn, M., Baker, T. R., Baldocchi, D., Bekker, R., Blanco, C., Blonder, B., Bond, W., Bradstock, R., Bunker, D. E., Casanoves, F., Cavender-Bares, J., Chambers, J., Chapin, F. S., Chave, J., Coomes, D., Cornwell, W. K., Craine, J. M., Dobrin, B. H., Durka, W., Elser, J., Enquist, B. J., Esser, G., Estiarte, M., Fagan, W. F., Fang, J., Fernandez, F., Fidelis, A., Finegan, B., Flores, O., Ford, H., Frank, D., Freschet, G. T., Fyllas, N. M., Gallagher, R., Green, W., Gutierrez, A. G., Hickler, T., Higgins, S., Hodgson, J. G., Jalili, A., Jansen, S., Kerkhoff, A. J., Kirkup, D., Kitajima, K., Kleyer, M., Klotz, S., Knops, J. M. H., Kramer, K., Kuhn, I., Kurokawa, H., Laughlin, D., Lee, T. D., Leishman, M., Lens, F., Lenz, T., Lewis, S. L., Lloyd, J., Llusia, J., Louault, F., Ma, S., Mahecha, M. D., Manning, P., Massad, T., Medlyn, B., Messier, J., Moles, A., Muller, S., Nadrowski, K., Naeem, S., Niinemets, U., Nollert, S., Nuske, A., Ogaya, R., Joleksyn, J., Onipchenko, V. G., Onoda, Y., Ordonez, J., Overbeck, G., Ozinga, W., Patino, S., Paula, S., Pausas, J. G., Penuelas, J., Phillips, O. L., Pillar, V., Poorter, H., Poorter, L., Poschlod, P., Proulx, R., Rammig, A., Reinsch, S., Reu, B., Sack, L., Salgado, B., Sardans, J., Shiodera, S., Shipley, B., Sosinski, E., Soussana, J.-F., Swaine, E., Swenson, N., Thompson, K., Thornton, P., Waldram, M., Weiher, E., White, M., Wright, S. J., Zaehle, S., Zanne, A. E., and Wirth, C.
- Abstract
Plant traits – the morphological, anatomical, physiological, biochemical and phenological characteristics of plants and their organs – determine how primary producers respond to environmental factors, affect other trophic levels, influence ecosystem processes and services and provide a link from species richness to ecosystem functional diversity. Trait data thus represent the raw material for a wide range of research from evolutionary biology, community and functional ecology to biogeography. Here we present the global database initiative named TRY, which has united a wide range of the plant trait research community worldwide and gained an unprecedented buy-in of trait data: so far 93 trait databases have been contributed. The data repository currently contains almost three million trait entries for 69 000 out of the world's 300 000 plant species, with a focus on 52 groups of traits characterizing the vegetative and regeneration stages of the plant life cycle, including growth, dispersal, establishment and persistence. A first data analysis shows that most plant traits are approximately log-normally distributed, with widely differing ranges of variation across traits. Most trait variation is between species (interspecific), but significant intraspecific variation is also documented, up to 40% of the overall variation. Plant functional types (PFTs), as commonly used in vegetation models, capture a substantial fraction of the observed variation – but for several traits most variation occurs within PFTs, up to 75% of the overall variation. In the context of vegetation models these traits would better be represented by state variables rather than fixed parameter values. The improved availability of plant trait data in the unified global database is expected to support a paradigm shift from species to trait-based ecology, offer new opportunities for synthetic plant trait research and enable a more realistic and empirically grounded representation of terrestrial vegetation in Earth system models.
- Published
- 2011
15. TRY: a global database of plant traits
- Author
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Bradstock, Ross A, Ma, S, Fang, J, van Bodegom, P M, Reichstein, M, Lavorel, S, Blanco, C, Soudzilovskaia, N A, Prentice, I C, Cornelissen, J H C, Baldocchi, D, Violle, C, Bahn, M, Garnier, E, Atkin, O, Reich, P B, Westoby, M, Ackerly, D D, Leadley, P, Bond, W, Kattge, J, Blonder, B, Wright, I J, Diaz, S, Bonisch, G, Anand, M, Harrison, S P, Wright, S J, Zanne, A E, Wirth, C, White, S, Yguel, B, Weiher, E, Zaehle, S, White, M, Baker, T, Bekker, R, Enquist, B, Sosinski, E, Soussana, J F, Waldram, M, Thompson, K, Swenson, A, Thornton, P, Swaine, E, Moles, A T, Manning, P, Naeem, S, Medlyn, B E, Massad, T, Messier, J, Muller, S C, Nadrowski, K, Mahecha, M D, Ogaya, R, Onipchenko, V G, Ozinga, W A, Oleksyn, J, Onoda, Y, Patino, S, Nollert, S, Ordonez, J, Niimemets, U, Nuske, A, Overbeck, G, Pillar, V, Poschlod, P, Paula, S, Penuelas, J, Phillips, O L, Poorter, H, Poorter, L, Prinzing, A, Pausas, J G, Salgado-Negret, B, Reu, B, Reinsch, S, Rammig, A, Sardans, J, Siefert, A, Proulx, R, Sack, L, Shipley, B, Shiodera, S, Chambers, J, Chave, J, Chapin, F, Casanoves, F, Cavender-Bares, J, Bunker, D, Coomes, D, Craine, J M, Cornwell, W K, Dobrin, B H, Esser, G, Durka, W, Elser, J, Estiarte, M, Duarte, L, Fernandez-Mendez, F, Fagan, W F, Ford, H, Flores, O, Finegan, B, Fidelis, A, Frank, D, Gallaghers, R V, Green, W A, Freschet, G T, Gutierrez, A G, Fyllas, N M, Jalili, A, Hodgson, J G, Higgins, S I, Hickler, T, Jansen, S, Kramer, K, Kirkup, D, Knops, J M H, Kleyer, M, Klotz, S, Joly, C A, Kitajima, K, Khun, I, Kerkhoff, A J, Kurokawa, H, Llusia, J, Laughlin, D, Lenz, T, Lee, T D, Lewis, S L, Lloyd, J, Leishman, M, Lens, F, Louault, F, Bradstock, Ross A, Ma, S, Fang, J, van Bodegom, P M, Reichstein, M, Lavorel, S, Blanco, C, Soudzilovskaia, N A, Prentice, I C, Cornelissen, J H C, Baldocchi, D, Violle, C, Bahn, M, Garnier, E, Atkin, O, Reich, P B, Westoby, M, Ackerly, D D, Leadley, P, Bond, W, Kattge, J, Blonder, B, Wright, I J, Diaz, S, Bonisch, G, Anand, M, Harrison, S P, Wright, S J, Zanne, A E, Wirth, C, White, S, Yguel, B, Weiher, E, Zaehle, S, White, M, Baker, T, Bekker, R, Enquist, B, Sosinski, E, Soussana, J F, Waldram, M, Thompson, K, Swenson, A, Thornton, P, Swaine, E, Moles, A T, Manning, P, Naeem, S, Medlyn, B E, Massad, T, Messier, J, Muller, S C, Nadrowski, K, Mahecha, M D, Ogaya, R, Onipchenko, V G, Ozinga, W A, Oleksyn, J, Onoda, Y, Patino, S, Nollert, S, Ordonez, J, Niimemets, U, Nuske, A, Overbeck, G, Pillar, V, Poschlod, P, Paula, S, Penuelas, J, Phillips, O L, Poorter, H, Poorter, L, Prinzing, A, Pausas, J G, Salgado-Negret, B, Reu, B, Reinsch, S, Rammig, A, Sardans, J, Siefert, A, Proulx, R, Sack, L, Shipley, B, Shiodera, S, Chambers, J, Chave, J, Chapin, F, Casanoves, F, Cavender-Bares, J, Bunker, D, Coomes, D, Craine, J M, Cornwell, W K, Dobrin, B H, Esser, G, Durka, W, Elser, J, Estiarte, M, Duarte, L, Fernandez-Mendez, F, Fagan, W F, Ford, H, Flores, O, Finegan, B, Fidelis, A, Frank, D, Gallaghers, R V, Green, W A, Freschet, G T, Gutierrez, A G, Fyllas, N M, Jalili, A, Hodgson, J G, Higgins, S I, Hickler, T, Jansen, S, Kramer, K, Kirkup, D, Knops, J M H, Kleyer, M, Klotz, S, Joly, C A, Kitajima, K, Khun, I, Kerkhoff, A J, Kurokawa, H, Llusia, J, Laughlin, D, Lenz, T, Lee, T D, Lewis, S L, Lloyd, J, Leishman, M, Lens, F, and Louault, F
- Abstract
Plant traits the morphological, anatomical, physiological, biochemical and phenological characteristics of plants andtheir organs determine how primary producers respond to environmental factors, affect other trophic levels,influence ecosystem processes and services and provide a link from species richness to ecosystem functional diversity.Trait data thus represent the raw material for a wide range of research from evolutionary biology, community andfunctional ecology to biogeography. Here we present the global database initiative named TRY, which has united awide range of the plant trait research community worldwide and gained an unprecedented buy-in of trait data: so far93 trait databases have been contributed. The data repository currently contains almost three million trait entries for69 000 out of the worlds 300 000 plant species, with a focus on 52 groups of traits characterizing the vegetative andregeneration stages of the plant life cycle, including growth, dispersal, establishment and persistence. A first dataanalysis shows that most plant traits are approximately log-normally distributed, with widely differing ranges ofvariation across traits. Most trait variation is between species (interspecific), but significant intraspecific variation isalso documented, up to 40% of the overall variation. Plant functional types (PFTs), as commonly used in vegetationmodels, capture a substantial fraction of the observed variation but for several traits most variation occurs withinPFTs, up to 75% of the overall variation. In the context of vegetation models these traits would better be represented bystate variables rather than fixed parameter values. The improved availability of plant trait data in the unified globaldatabase is expected to support a paradigm shift from species to trait-based ecology, offer new opportunities forsynthetic plant trait research and enable a more realistic and empirically grounded representation of terrestrialvegetation in Earth system models
- Published
- 2011
16. The African key project: Gateway to African plants
- Author
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Victor, J.E., primary and Kirkup, D., additional
- Published
- 2008
- Full Text
- View/download PDF
17. Lucid Professional Version 2.0: tools for identification and diagnosis. Centre for Pest Information Technology & Transfer.
- Author
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Kirkup, D., primary
- Published
- 2002
- Full Text
- View/download PDF
18. Flora Malesiana
- Author
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Schmid, Rudolf, primary, Kalkman, C., additional, Stevens, P. F., additional, Kirkup, D. W., additional, de Wilde, W. J. J. O., additional, Nooteboom, H. P., additional, Meijer, W., additional, Riedl, H., additional, Huang, T.-C., additional, Saunders, R. M. K., additional, and Barlow, B. A., additional
- Published
- 1998
- Full Text
- View/download PDF
19. A Checklist of the Flowering Plants and Gymnosperms of Brunei Darussalam
- Author
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van Welzen, Peter C., primary, Coode, M. J. E., additional, Dransfield, J., additional, Forman, L. L., additional, Kirkup, D. W., additional, and Said, Idris M., additional
- Published
- 1998
- Full Text
- View/download PDF
20. The use of digital image-based morphometrics to study the phenotypic mosaic in taxa with porous genomes
- Author
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Christian Lexer, Joseph, J., Loo, M., Prenner, G., Heinze, B., Chase, M. W., and Kirkup, D.
- Abstract
Rapid recent developments in DNA sequencing and genetic marker technologies call for the establishment of cost-effective, automated phenotyping assays for evolutionary biology and systematics, so that the effects of DNA polymorphisms and epigenetic changes on the phenotype can be evaluated. We discuss the use of digital image-based morphometrics in evolutionary biology and systematics with special emphasis on studies of taxa with porous genomes, i.e., taxa that do not conform to the traditional view of whole-genome isolation between species. We outline the phenomenon of the 'phenotypic mosaic' in taxa with porous genomes using well-documented examples from the literature and describe three important challenges arising for taxonomists: (1) character conflict in phylogenetic studies, (2) biased sampling of traits in morphological studies, and (3) cryptic ecological speciation. We demonstrate the use of geometric morphometrics using a combined molecular and morphometric dataset from an interspecific hybrid zone between two divergent Eurasian species of Populus, P. alba (white poplar) and P. tremula (European aspen). Elliptic Fourier analysis (EFA)-based morphometric data were collected for 527 leaf specimens from 84 trees with known genomic composition as determined by a set of 30 nuclear DNA microsatellites. In addition, to demonstrate the ease of scoring functionally relevant phenotypes via digital image analysis, quantitative differences in leaf reflectance were examined and their structural basis determined using scanning electron microscopy (SEM). The EFA results indicate a heritable inter-individual component for symmetric aspects and an important intra-individual component for asymmetric aspects of variation in leaf outlines. Symmetric traits displayed a striking variety of phenotypes in hybrids compared to their parental species, consistent with the notion of the phenotypic mosaic. Linear discriminant analysis of these morphometric traits revealed (1) clear differentiation between parental species and (2) divergence between recombinant hybrids and their sympatric backcross parent P. alba, mediated primarily by two P. tremula-like and two transgressive traits. Our results demonstrate the usefulness of geometric morphometrics to interrogate multiple independent phenotypic characters and detect individual traits affected by introgression and divergence in taxa with porous genomes. Digital image-based morphometrics holds great promise for large-scale studies of relationships between DNA polymorphism and phenotypes in evolutionary biology.
21. A re-examination of the life and work of A.F.G. Kerr and of his colleagues and friends
- Author
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Parnell, J. A. N., Pilla, F., Simpson, C. D. A., Welzen, P. C., Chayamarit, K., Chantaranothai, P., Boyce, P. C., Bygrave, P., Byrne, C., Chen, S., Couch, C., Curtis, T., Dransfield, S., Duyfjes, B. E. E., Eianthong, W., Esser, H. J., Grote, P. J., Hua, Z., Jebb, M. H. P., Kirkup, D. W., Loc, P. K., Larsen, S. S., Macklin, J., Madern, A., Meade, C., Merklinger, F., Middleton, D. J., Moat, J., Muasya, A. M., Nakmuenwai, P., Pederson, H., Pendry, C. A., Amornrat Prajaksood, Pooma, R., Preusapan, K., Puglisi, C., Sathapattayanon, A., Sukkharak, P., Staples, G., Strijk, J., Suddee, S., Sungkaew, S., Tangjitman, K., Teerwatananon, A., Tovaranonte, J., Ung, T., Blasi, A. T., Wilde, W. J. J. O., Wilkin, P., and Yahara, T.
- Subjects
Thai Biogeography Group ,A.F.G. Kerr ,Thai maps ,Thai plants ,Thai photographs ,Plant collecting ,Socio-economic history ,GIS ,Thailand ,Irish Botanist ,Densities and localities - Abstract
Arthur Francis George Kerr's life is reviewed and related to a previously published account. Kerr's collecting activity is analysed using an expanded version of the Thai Biogeography Group's database of collections. 8,666 of the total 48,970 collections are Kerr's and 3,178 are those of his colleagues and friends. Therefore, the total number of collections made by Kerr and his acquaintances is likely to be larger and more diverse than previously believed. Mapping of these data using GIS show that Kerr's collecting activities focussed on particular regions of Thailand at particular times. Also large areas of the country remained unexplored by Kerr and his acquaintances: a pattern that, to some extent, persists to this day. The large, but dispersed, archive of Kerr's photographs, maps, living collections and correspondence indicate that he was a skilled photographer (taking at least 3,000 images), cartographer (producing many hand-drawn maps) and exceptionally acute, accurate and detailed observer (fi lling numerous notebooks and leaving other records). It is clear that digitising these collections to form an on-line dedicated website is highly desirable to further progress on the fl ora of Thailand and surrounding countries and would form an unique record of the social history of early 20thC Thailand.
22. Venation pattern analysis of leaf images
- Author
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Clarke, J., Barman, S., Remagnino, P., Bailey, K., Kirkup, D., Mayo, S., and Paul Wilkin
23. Variation of theanine, phenolic, and methylxanthine compounds in 21 cultivars of Camellia sinensis harvested in different seasons.
- Author
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Fang R, Redfern SP, Kirkup D, Porter EA, Kite GC, Terry LA, Berry MJ, and Simmonds MS
- Subjects
- Camellia sinensis growth & development, Catechin analogs & derivatives, Catechin analysis, China, Flavonoids analysis, Plant Leaves chemistry, Camellia sinensis metabolism, Glutamates analysis, Phenols analysis, Plant Extracts analysis, Seasons, Xanthines analysis
- Abstract
This is the first study to use chemometric methods to differentiate among 21 cultivars of Camellia sinensis from China and between leaves harvested at different times of the year using 30 compounds implicated in the taste and quality of tea. Unique patterns of catechin derivatives were observed among cultivars and across harvest seasons. C. sinensis var. pubilimba (You 510) differed from the cultivars of C. sinensis var. sinensis, with higher levels of theobromine, (+)-catechin, gallocatechin, gallocatechin gallate and theasinensin B, and lower levels of (-)-epicatechin, (-)-epigallocatechin (EGC) and (-)-epigallocatechin gallate (EGCG), respectively. Three cultivars of C. sinensis var. sinensis, Fuyun 7, Qiancha 7 and Zijuan contained significantly more caffeoylquinic acids than others cultivars. A Linear Discriminant Analysis model based on the abundance of 12 compounds was able to discriminate amongst all 21 tea cultivars. Harvest time impacted the abundance of EGC, theanine and afzelechin gallate., (Copyright © 2016. Published by Elsevier Ltd.)
- Published
- 2017
- Full Text
- View/download PDF
24. The global spectrum of plant form and function.
- Author
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Díaz S, Kattge J, Cornelissen JH, Wright IJ, Lavorel S, Dray S, Reu B, Kleyer M, Wirth C, Prentice IC, Garnier E, Bönisch G, Westoby M, Poorter H, Reich PB, Moles AT, Dickie J, Gillison AN, Zanne AE, Chave J, Wright SJ, Sheremet'ev SN, Jactel H, Baraloto C, Cerabolini B, Pierce S, Shipley B, Kirkup D, Casanoves F, Joswig JS, Günther A, Falczuk V, Rüger N, Mahecha MD, and Gorné LD
- Subjects
- Biodiversity, Databases, Factual, Genetic Variation, Internationality, Models, Biological, Nitrogen analysis, Organ Size, Plant Development, Plant Leaves anatomy & histology, Plant Stems anatomy & histology, Plants classification, Reproduction, Seeds anatomy & histology, Selection, Genetic, Species Specificity, Phenotype, Plant Physiological Phenomena, Plants anatomy & histology
- Abstract
Earth is home to a remarkable diversity of plant forms and life histories, yet comparatively few essential trait combinations have proved evolutionarily viable in today's terrestrial biosphere. By analysing worldwide variation in six major traits critical to growth, survival and reproduction within the largest sample of vascular plant species ever compiled, we found that occupancy of six-dimensional trait space is strongly concentrated, indicating coordination and trade-offs. Three-quarters of trait variation is captured in a two-dimensional global spectrum of plant form and function. One major dimension within this plane reflects the size of whole plants and their parts; the other represents the leaf economics spectrum, which balances leaf construction costs against growth potential. The global plant trait spectrum provides a backdrop for elucidating constraints on evolution, for functionally qualifying species and ecosystems, and for improving models that predict future vegetation based on continuous variation in plant form and function.
- Published
- 2016
- Full Text
- View/download PDF
25. Enriched biodiversity data as a resource and service.
- Author
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Vos RA, Biserkov JV, Balech B, Beard N, Blissett M, Brenninkmeijer C, van Dooren T, Eades D, Gosline G, Groom QJ, Hamann TD, Hettling H, Hoehndorf R, Holleman A, Hovenkamp P, Kelbert P, King D, Kirkup D, Lammers Y, DeMeulemeester T, Mietchen D, Miller JA, Mounce R, Nicolson N, Page R, Pawlik A, Pereira S, Penev L, Richards K, Sautter G, Shorthouse DP, Tähtinen M, Weiland C, Williams AR, and Sierra S
- Abstract
Background: Recent years have seen a surge in projects that produce large volumes of structured, machine-readable biodiversity data. To make these data amenable to processing by generic, open source "data enrichment" workflows, they are increasingly being represented in a variety of standards-compliant interchange formats. Here, we report on an initiative in which software developers and taxonomists came together to address the challenges and highlight the opportunities in the enrichment of such biodiversity data by engaging in intensive, collaborative software development: The Biodiversity Data Enrichment Hackathon., Results: The hackathon brought together 37 participants (including developers and taxonomists, i.e. scientific professionals that gather, identify, name and classify species) from 10 countries: Belgium, Bulgaria, Canada, Finland, Germany, Italy, the Netherlands, New Zealand, the UK, and the US. The participants brought expertise in processing structured data, text mining, development of ontologies, digital identification keys, geographic information systems, niche modeling, natural language processing, provenance annotation, semantic integration, taxonomic name resolution, web service interfaces, workflow tools and visualisation. Most use cases and exemplar data were provided by taxonomists. One goal of the meeting was to facilitate re-use and enhancement of biodiversity knowledge by a broad range of stakeholders, such as taxonomists, systematists, ecologists, niche modelers, informaticians and ontologists. The suggested use cases resulted in nine breakout groups addressing three main themes: i) mobilising heritage biodiversity knowledge; ii) formalising and linking concepts; and iii) addressing interoperability between service platforms. Another goal was to further foster a community of experts in biodiversity informatics and to build human links between research projects and institutions, in response to recent calls to further such integration in this research domain., Conclusions: Beyond deriving prototype solutions for each use case, areas of inadequacy were discussed and are being pursued further. It was striking how many possible applications for biodiversity data there were and how quickly solutions could be put together when the normal constraints to collaboration were broken down for a week. Conversely, mobilising biodiversity knowledge from their silos in heritage literature and natural history collections will continue to require formalisation of the concepts (and the links between them) that define the research domain, as well as increased interoperability between the software platforms that operate on these concepts.
- Published
- 2014
- Full Text
- View/download PDF
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