1. Hotspot DAXX, PTCH2 and CYFIP2 mutations in pancreatic neuroendocrine neoplasms
- Author
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G. Van Camp, K. Op de Beeck, K Biermann, W. W. de Herder, Timon Vandamme, Marc Peeters, Kimberly Kamp, Matthias Beyens, Gitta Boons, Leo J. Hofland, Patrick Pauwels, Anne Schepers, Internal Medicine, and Pathology
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Adult ,Male ,0301 basic medicine ,Cancer Research ,medicine.medical_specialty ,Endocrinology, Diabetes and Metabolism ,Biology ,Patched-2 Receptor ,Germline ,03 medical and health sciences ,symbols.namesake ,0302 clinical medicine ,Endocrinology ,Death-associated protein 6 ,Molecular genetics ,medicine ,Humans ,MEN1 ,PI3K/AKT/mTOR pathway ,ATRX ,Adaptor Proteins, Signal Transducing ,Aged ,Sanger sequencing ,Genetics ,High-Throughput Nucleotide Sequencing ,Middle Aged ,Amplicon ,Pancreatic Neoplasms ,Neuroendocrine Tumors ,030104 developmental biology ,Oncology ,030220 oncology & carcinogenesis ,Mutation ,symbols ,Female ,Human medicine ,Co-Repressor Proteins ,Molecular Chaperones - Abstract
Mutations in DAXX/ATRX, MEN1 and genes involved in the phosphoinositide-3-kinase/Akt/mammalian target of rapamycin (PI3K/Akt/mTOR) pathway have been implicated in pancreatic neuroendocrine neoplasms (pNENs). However, mainly mutations present in the majority of tumor cells have been identified, while proliferation-driving mutations could be present only in small fractions of the tumor. This study aims to identify high- and low-abundance mutations in pNENs using ultra-deep targeted resequencing. Formalin-fixed paraffin-embedded matched tumor-normal tissue of 38 well-differentiated pNENs was sequenced using a HaloPlex targeted resequencing panel. Novel amplicon-based algorithms were used to identify both single nucleotide variants (SNVs) and insertion-deletions (indels) present in >10% of reads (high abundance) and in MEN1, DAXX, ATRX, TSC2, PI3K/Akt/mTOR and MAPK-ERK pathway-related genes. Additionally, recurrent alterations on the same genomic position, so-called hotspot mutations, were found in DAXX, PTCH2 and CYFIP2. This first ultra-deep sequencing study highlighted genetic intra-tumor heterogeneity in pNEN, by the presence of low-abundance mutations. The importance of the ATRX/DAXX pathway was confirmed by the first-ever pNEN-specific protein-damaging hotspot mutation in DAXX. In this study, both novel genes, including the pro-apoptotic CYFIP2 gene and hedgehog signaling PTCH2, and novel pathways, such as the MAPK-ERK pathway, were implicated in pNEN.
- Published
- 2019
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