178 results on '"Kim PT"'
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2. Peak Quadriceps Muscle Torque and Electromyographic Output in Patients With Chronic Respiratory Disorders: Effects of Pulmonary Rehabilitation
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Gregory Grandio, MD, Guadalupe Yetter, DPT, Spencer Briglio, BA, Kimberly Ong, PT, Joel Froding, DPT, Jimmy Kim, PT, Juan Cortez, NP, and Ahmet Baydur, MD
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Chronic airflow limitation ,Dynamometry ,Electromyography ,Interstitial lung disease ,Isokinetic contractions ,Limb muscle function ,Medicine (General) ,R5-920 - Abstract
Objective: To assess the change in relation of the peak quadriceps electromyographic signal to the peak torque produced during a train of 5 isokinetic knee extensions (from 90 degrees below horizontal at a constant speed of 60 degrees/s) at baseline, and at 4 and 8 weeks of pulmonary rehabilitation. Design: In this prospective observational study, isokinetic contractions were recorded during the extensions from the knee bent at 90 degrees to the horizontal plane against graded resistance. Peak quadriceps torque signal (Tq) and peak electromyographic signal (Eq) were recorded by dynamometry and surface electrodes placed at designated locations over the muscle group, respectively. Setting: Physical therapy department in a tertiary care medical center. Participants: Eighteen patients (9 restrictive lung disease, 6 chronic airflow limitation, 3 non-ILD restrictive; N=18) were compared with 11 healthy control subjects. Interventions: Patients underwent an 8-week pulmonary rehabilitation program. Main Outcome Measures: Comparisons of Tq, Eq, and Tq/Eq ratio among patients and controls were by analysis of variance. Associations between physiological variables were determined by multivariable Pearson's correlation. Results: Compared with patients, controls exhibited a 22% higher baseline mean peak Eq (P
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- 2023
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3. Optimized nerve block techniques while performing percutaneous hepatic ablation: Literature review and practical use
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Liu, DM, Hadjivassiliou, A, Valenti, D, Ho, SG, Klass, D, Chung, JB, Kim, PT, and Boucher, LM
- Published
- 2020
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4. Effects of the Bad Ragaz Ring Method on muscle activation of the lower limbs and balance ability in chronic stroke: A randomised controlled trial
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Hyun-Gyu Cha, PT, PhD, Young-Jun Shin, PT, MS, and Myoung-Kwon Kim, PT, PhD
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Therapeutics. Pharmacology ,RM1-950 - Abstract
Background: Recovery of balance and walking abilities is important for the rehabilitation of stroke patients. Objectives: To evaluate the effects of the Bad Ragaz Ring method on functional recovery in chronic stroke patients. Methods: Twenty-two chronic stroke patients were randomly assigned to two groups: a Bad Ragaz Ring method group (the experimental group) or a control group. Stroke patients in the experimental group underwent Bad Ragaz Ring exercise and comprehensive rehabilitation therapy, whereas patients in the control group underwent comprehensive rehabilitation therapy alone. The participants in both groups received therapy 3 days per week for 6 weeks. Muscle activations, balance indices, and Timed Up and Go test results were assessed before and after the 6-week therapy period. Results: The experimental group showed significant improvements in activations of tibialis anterior and gastrocnemius muscles, balance index, and Timed Up and Go test results as compared with preintervention results (p < 0.05), whereas the control group showed significant improvement in Timed Up and Go test (p < 0.05). Significant differences in posttraining gains in the activations of tibialis anterior and gastrocnemius muscles and in balance index were observed between the experimental and control groups (p < 0.05). Effect sizes for gains in the experimental and control groups were strong for tibialis anterior and gastrocnemius muscles (effect sizes, 1.04 and 1.45 respectively). Conclusion: The Bad Ragaz Ring method may be beneficial for improving balance and leg muscle activation of chronic stroke patients. Keywords: Bad Ragaz Ring method, balance, stroke
- Published
- 2017
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5. The effect of mirror therapy on balance ability of subacute stroke patients
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Myoung-Kwon Kim, PT, PhD, Sang-Gu Ji, PT, PhD, and Hyun-Gyu Cha, PT, PhD
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balance ,mirror therapy ,subacute stroke ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Background: Rehabilitation of subacute stroke patients represents a major challenge. Objective: This study was conducted to examine the effects of mirror therapy on balance ability among subacute stroke patients. Methods: The patients were assigned to a mirror therapy group (n = 17) or a sham therapy group (n = 17). Participants in the experimental group received mirror therapy and conventional rehabilitation therapy for a total of 60 minutes (mirror therapy: 30 minutes; conventional rehabilitation therapy: 30 minutes) per day, with a 10 minute rest period halfway through the session. Participants in the experimental group received training 5 days/week for 4 weeks. Participants in the control group received sham therapy and conventional rehabilitation therapy for a total of 60 minutes (sham therapy: 30 minutes, conventional rehabilitation therapy: 30 minutes) per day on the same day. Balance Index (BI) scores were obtained using a balance measurement system. Results: A significant difference in post-training gains for the overall stability index and medial and lateral stability index was observed between the experimental group and the control group (p
- Published
- 2016
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6. The effects of repetitive transcranial magnetic stimulation on unilateral neglect of acute stroke patients: A randomised controlled trial
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Hyun Gyu Cha, PT, PhD and Myoung Kwon Kim, PT, PhD
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repetitive transcranial magnetic stimulation ,stroke ,unilateral neglect ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Background: Rehabilitation of the unilateral neglect of acute stroke patients represents a major challenge. Objectives: This study aimed to evaluate the effects of repetitive transcranial magnetic stimulation on the functional recovery of stroke patients with unilateral neglect. Methods: Twenty patients with stroke were randomly assigned to two groups: a repetitive transcranial magnetic stimulation group (experimental) and a control group. The stroke patients in the experimental group underwent repetitive transcranial magnetic stimulation therapy and comprehensive rehabilitation therapy. The stroke patients in the control group underwent sham magnetic stimulation therapy and comprehensive rehabilitation therapy. The patients in both groups received therapy 5 days per week for 4 weeks. The Motor Free Visual Perception Test (MVPT), Line Bisection Test (LBT), Albert Test (AT), and Star Cancellation Test (SCT) were assessed before and after the 4-week therapy period. Results: The experimental group showed a significant increase in the MVPT, LBT, AT, and SCT values compared with the preintervention values (p
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- 2015
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7. Augmented reality-based postural control training improves gait function in patients with stroke: Randomized controlled trial
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Chi-Ho Lee, PT, MSc, Yumi Kim, PT, DPT, and Byoung-Hee Lee, PT, PhD
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augmented reality ,balance ,gait function ,postural control ,stroke ,Therapeutics. Pharmacology ,RM1-950 - Abstract
The purpose of this study was to determine the effects of augmented reality (AR)-based postural control training on balance and gait function in stroke patients. Twenty-one stroke patients were assigned to either an experimental group (n = 10) or a control group (n = 11). Patients in both groups received a general physical therapy program for a duration of 30 minutes per session, 5 days per week, for a period of 4 weeks. Participants in the experimental group received additional AR-based postural control training for 30 minutes per day, 3 days per week, for a period of 4 weeks. Patients were assessed with the timed up-and-go test, Berg Balance Scale test, and spatiotemporal parameters using the GAITRite system. Results of repeated-measures analysis of covariance showed a significant main effect of time on timed up-and-go test, Berg Balance Scale, velocity, cadence, step length and stride length of paretic and nonparetic sides. In addition, walking velocity, step length, and stride length on both the paretic and nonparetic sides showed a significant group × time interaction effect. The results of this study provide evidence in support of incorporating an AR environment into postural control training for improving gait of stroke patients.
- Published
- 2014
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8. Comparison of hip extensor muscle activity including the adductor magnus during three prone hip extension exercises
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Han-i Ko Pt, Kyue-nam Park Pt, Si-hyun Kim Pt, and Seung-yeon Jeon Pt
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musculoskeletal diseases ,Adult ,Male ,030506 rehabilitation ,Hamstring muscles ,Adductor magnus muscle ,Physical Therapy, Sports Therapy and Rehabilitation ,Hamstring Muscles ,Electromyography ,03 medical and health sciences ,Hip adduction ,Young Adult ,0302 clinical medicine ,Medicine ,Humans ,Range of Motion, Articular ,Muscle, Skeletal ,medicine.diagnostic_test ,business.industry ,Anatomy ,musculoskeletal system ,Biomechanical Phenomena ,Hip extension ,Female ,Hip Joint ,medicine.symptom ,Extensor muscle ,0305 other medical science ,business ,030217 neurology & neurosurgery ,Muscle contraction ,Muscle Contraction ,Preliminary Data - Abstract
This study compared the role of the adductor magnus muscle (Amag) as a hip extensor while performing active prone hip extension (PHE), PHE with hip adduction (PHE-ADD), and PHE with hip abduction (PHE-ABD) with the gluteus maximus (Gmax) and hamstrings.The study recruited 22 healthy participants. Electromyography data were recorded from the Amag, Gmax, and medial and lateral hamstrings during PHE, PHE-ADD, and PHE-ABD. Normalized electromyographic data were examined using one-way, repeated-measures analyses of variance.The magnitude of the Amag, Gmax, and hamstring activations did not differ significantly while performing PHE (p = 0.41). Furthermore, the Amag and hamstring activations were significantly greater than the Gmax activation when performing PHE-ADD (p 0.05). The Gmax showed significantly greater activation during PHE-ABD than the Amag and medial and lateral hamstrings (p 0.05).Based on these results, we advocate including the Amag as a hip extensor during the PHE test or exercise. Our preliminary results have the potential to be applied directly to the PHE test, for investigating the muscle-activation pattern of the Amag with the Gmax and hamstrings in patients with hip or lower back pain.
- Published
- 2018
9. Zona conoidea of the elbow: Another articulation between the radial head and lateral trochlear of the elbow.
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Jeon IH, Chun JM, Lee CS, Yoon JO, Kim PT, An KN, Morrey BF, and Shin HD
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- 2012
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10. Snapping junctura tendinum to the small finger simulating radial sagittal band rupture. A report of two cases.
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Jeon IH, Seok JH, Choi JW, Lee BW, Kim SY, Kim PT, Jeon, In-Ho, Seok, Joon-Ho, Choi, Jin-Won, Lee, Byung-Woo, Kim, Shin-Yoon, and Kim, Poong-Taek
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- 2009
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11. Bone transport over an intramedullary nail for reconstruction of long bone defects in tibia.
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Oh CW, Song HR, Roh JY, Oh JK, Min WK, Kyung HS, Kim JW, Kim PT, and Ihn JC
- Published
- 2008
12. Anterior plating and percutaneous iliosacral screwing in an unstable pelvic ring injury.
- Author
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Oh CW, Kim PT, Kim JW, Min WK, Kyuung HS, Kim SY, Oh SH, and Ihn JC
- Published
- 2008
13. Vascularized compared with nonvascularized fibular grafts for large osteonecrotic lesions of the femoral head.
- Author
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Kim SY, Kim YG, Kim PT, Ihn JC, Cho BC, Koo KH, Kim, Shin-Yoon, Kim, Yong-Goo, Kim, Poong-Taek, Ihn, Joo-Chul, Cho, Byung-Chae, and Koo, Kyung-Hoi
- Abstract
Background: Many authors have reported good results with the use of vascularized fibular grafts to treat large osteonecrotic lesions of the femoral head. To our knowledge, there have been no prospective case-controlled studies comparing the effectiveness of vascularized fibular grafting with that of nonvascularized fibular grafting for the prevention of progression and collapse of the lesion.Methods: Nineteen patients (twenty-three hips) with a large osteonecrotic lesion of the femoral head (Stage IIC in ten hips, Stage IIIC in two, and Stage IVC in eleven, according to the classification system of Steinberg et al.) underwent vascularized fibular grafting. This group was retrospectively matched according to the etiology, stage, and size of the lesion to a group of nineteen patients (twenty-three hips) who underwent nonvascularized fibular grafting during the same time period. A prospective case-controlled study of the two groups, with a mean duration of follow-up of four years, was then performed.Results: The mean Harris hip score improved for 70% of the hips treated with a vascularized graft and 35% of the hips treated with a nonvascularized graft (p < 0.05). At the time of the final follow-up, nine of the ten hips with a Stage-IIC lesion treated with a vascularized fibular graft had not collapsed whereas seven of the thirteen hips with a larger lesion (Stage IIIC or IVC) had collapsed. Three hips (13%) were converted to a total hip replacement. The mean dome depression measured 2.8 mm. In the group treated with a nonvascularized graft, five of the ten Stage-IIC hips had not collapsed and eleven of the thirteen hips with a larger lesion had collapsed. Five (22%) of the hips were converted to a total hip replacement. The mean dome depression measured 4.3 mm. The rates of radiographic progression and collapse were significantly lower and the mean dome depression was significantly less in the group treated with a vascularized fibular graft (p < 0.05).Conclusions: Vascularized fibular grafting was associated with better clinical results and was more effective than nonvascularized fibular grafting for the prevention of collapse of the femoral head in a matched population with a Steinberg Stage-IIC or larger osteonecrotic lesion. The results of vascularized grafting were best when the procedure was used to treat precollapse lesions (Steinberg Stage IIC). [ABSTRACT FROM AUTHOR]- Published
- 2005
14. Assessment of one alternative to an essay format certification examination.
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Fullerton JT, Howell BB, and Kim PT
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- 1986
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15. Surgical treatment and clinical implication for posterolateral rotatory instability of the elbow: osborne-cotterill lesion of the elbow.
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Jeon IH, Min WK, Micic ID, Cho HS, and Kim PT
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- 2011
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16. Patients with osteoarthritic knees have shorter orientation and tangent indicatrices during gait.
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Pierrynowski MR, Costigan PA, Maly MR, and Kim PT
- Abstract
BACKGROUND: This study introduces two novel outcomes that could be used to identify people with knee osteoarthritis from healthy controls. These outcomes examine the lengths of paths on a sphere derived from knee angle and knee position during gait. METHODS: Participants with moderate knee osteoarthritis (n=47) and no knee pathology (n=51) walked overground. The time-varying orientation matrices and position vectors of the knee (leg relative to the thigh) were measured, then arclength (constant speed) parameterized. The orientation matrix column aligned with the long axis of the leg, and the tangent, normal and binormal vectors (Frenet Frame) along the position vectors were calculated. These unit length vectors all scribe paths (indicatrices) on a unit sphere. The path lengths of these indicatrices, for all or part of a gait cycle, were the novel outcomes. A stepwise discriminant analysis defined a linear function that included those outcomes that best allocated a participant to the osteoarthritis or control group. FINDINGS: Group differences were best detected with the indicatrix lengths associated with the orientation of the leg's long axis over a gait cycle (P<0.001) and the tangent vector over the stance phase (P=0.014). Both outcomes were smaller in the knee osteoarthritis compared to control group. Walking speed was poorly correlated with all indicatrix lengths (rho<|0.484|) and a discriminate analysis correctly classified 83.7% of the participants. INTERPRETATION: Smaller indicatrix measures distinguished those with knee osteoarthritis from healthy controls. These outcomes introduce a promising new kinematic approach when examining gait data. [ABSTRACT FROM AUTHOR]
- Published
- 2010
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17. Analysis of early failure of the locking compression plate in osteoporotic proximal humerus fractures.
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Micic ID, Kim KC, Shin DJ, Shin SJ, Kim PT, Park IH, and Jeon IH
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- 2009
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18. Antimicrobial and anti-diabetic efficiency of Polyalthia longifolia leaf extracts and major compounds characterization.
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Brindhadevi K, Subramanian SA, Kim PT, Wadaan MA, Selvam DR, and Kim SJ
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- Plant Extracts pharmacology, Methanol, Escherichia coli, Staphylococcus aureus, Anti-Bacterial Agents pharmacology, Solvents, Candida albicans, Polyalthia, Clostridioides difficile, Anti-Infective Agents pharmacology, Fungicides, Industrial, Alkanes
- Abstract
This research was performed to investigate the bactericidal and fungicidal competence of extracts (methanol and petroleum ether extract) of Polyalthia longifolia leaf. Moreover, the major active compounds present in the effective crude extract (either methanol or petroleum ether extract) was determined through initially with UV-Vis spectra, FTIR, and GC-MS analyses. The methanol extract alone showed remarkable bactericidal and fungicidal activity against the bacterial (S. pyogenes > E. coli > S. aureus > S. pneumoniae > C. difficile > P. aeruginosa) and fungal (A. clavatus > C. albicans > A. niger > A. fumigatus > C. tropicalis > C. auris) pathogens at increased concentration (12.5 mg mL
-1 ) than petroleum ether extract. The MIC and MBC values of methanol extract were found as 10-20 mg mL-1 and 30-40 mg mL-1 respectively. The MFC value of methanol extract was found as 10-20 mg mL-1 . These MIC, MBC, and MFC values of methanol extract were considerably greater than petroleum ether extract. The FTIR and GC-MS characterization studies revealed that the presence of more acre functional groups belonging to bioactive compounds such as Z)-7-Hexadecenal, Aromandendrene, α-Curcumene, Caryophyllene, Methyl 14-methyl Pentadecanoat, Methyl trans-13-Octadecenoate, 9-Octadecenoic acid (Z)-, and 2-hydroxy-1- (hydroxymethyl)ethyl. As a result of these findings, it is possible that P. longifolia leaf methanol extract contains medicinally important bioactive substances with bactericidal and fungicidal properties., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier Inc. All rights reserved.)- Published
- 2024
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19. The Orphan Drug Act at 40: Legislative Triumph and the Challenges of Success.
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Saltonstall P, Ross H, and Kim PT
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- United States, Humans, Rare Diseases drug therapy, United States Food and Drug Administration, Orphan Drug Production, Drug Approval
- Abstract
Policy Points The Orphan Drug Act (ODA) was the result of patient advocacy and by many measures has been strikingly successful. However, approximately 95% of the more than 7,000 known rare diseases still have no US Food and Drug Administration-approved treatment. The ODA's success led to sustained criticism of high drug prices, often for products that have orphan drug indications. Critics misconstrue the ODA's intent and propose reducing its incentives instead of pursuing policies focused on addressing broader prescription drug price challenges that exist in both the orphan and nonorphan drug market. Patients and their families will continue to defend the purpose and integrity of the ODA and to drive investments into rare disease research and clinical development., (© 2023 Milbank Memorial Fund.)
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- 2024
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20. Deciphering the photocatalytic degradation of polyaromatic hydrocarbons (PAHs) using hausmannite (Mn 3 O 4 ) nanoparticles and their efficacy against bacterial biofilm.
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Brindhadevi K, Kim PT, AlSalhi MS, Elkader OHA, T N, Lee J, and Bharathi D
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- Ecosystem, Fluorenes, Water, Biofilms, Soil, Environmental Pollutants, Metal Nanoparticles toxicity, Metal Nanoparticles chemistry, Polycyclic Aromatic Hydrocarbons chemistry
- Abstract
Polyaromatic hydrocarbons (PAHs) are life-threatening organic pollutants that severely threaten ecosystems worldwide due to their poisonous qualities, cancer-causing properties, and mutation-causing qualities. Water and soil together form a critical component of the ecosystem that supports all life. Due to the pollutants that are being disposed of in them, their characteristics have changed, and their toxicity has increased. The goal of this study was to investigate the ability of hausmannite nanoparticles to degrade fluorene from soil and water. Using the chemical method, hausmannite nanoparticles were synthesized and further characterization was performed using UV-Vis, FTIR, DLS, XRD, and SEM-EDAX. Hausmannite significantly degraded fluorene using the batch adsorption method. The degradation was also confirmed by performing reactive kinetics using Freundlich's isotherm model and Langmuir's pseudo-second-order model of soil and water. In addition to the degradation efficacy, hausmannite was also proved to inhibit biofilm formation by Pseudomonas aeruginosa. The findings of the experiments confirmed the presence of hausmannite nanoparticles, as well as their physical properties, chemical properties, degradation properties, and parameters of the kinetic study. As a result, synthesized nanoparticles have been extensively utilized as a low-cost option for removing pollutants and microbial biofilm., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier Ltd. All rights reserved.)
- Published
- 2024
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21. An aging-susceptible circadian rhythm controls cutaneous antiviral immunity.
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Kirchner SJ, Lei V, Kim PT, Patel M, Shannon JL, Corcoran D, Hughes D, Waters DK, Dzirasa K, Erdmann D, Coers J, MacLeod AS, and Zhang JY
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- Humans, Animals, Mice, Aged, Skin metabolism, Aging, Keratinocytes metabolism, ARNTL Transcription Factors genetics, ARNTL Transcription Factors metabolism, Circadian Rhythm physiology
- Abstract
Aged skin is prone to viral infections, but the mechanisms responsible for this immunosenescent immune risk are unclear. We observed that aged murine and human skin expressed reduced levels of antiviral proteins (AVPs) and circadian regulators, including Bmal1 and Clock. Bmal1 and Clock were found to control rhythmic AVP expression in skin, and such circadian control of AVPs was diminished by disruption of immune cell IL-27 signaling and deletion of Bmal1/Clock genes in mouse skin, as well as siRNA-mediated knockdown of CLOCK in human primary keratinocytes. We found that treatment with the circadian-enhancing agents nobiletin and SR8278 reduced infection of herpes simplex virus 1 in epidermal explants and human keratinocytes in a BMAL1/CLOCK-dependent manner. Circadian-enhancing treatment also reversed susceptibility of aging murine skin and human primary keratinocytes to viral infection. These findings reveal an evolutionarily conserved and age-sensitive circadian regulation of cutaneous antiviral immunity, underscoring circadian restoration as an antiviral strategy in aging populations.
- Published
- 2023
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22. Fully automated multi-grid cryoEM screening using Smart Leginon.
- Author
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Cheng A, Kim PT, Kuang H, Mendez JH, Chua EYD, Maruthi K, Wei H, Sawh A, Aragon MF, Serbynovskyi V, Neselu K, Eng ET, Potter CS, Carragher B, Bepler T, and Noble AJ
- Subjects
- Cryoelectron Microscopy methods, Algorithms, Electrons, Software, Image Processing, Computer-Assisted methods
- Abstract
Single-particle cryo-electron microscopy (cryoEM) is a swiftly growing method for understanding protein structure. With increasing demand for high-throughput, high-resolution cryoEM services comes greater demand for rapid and automated cryoEM grid and sample screening. During screening, optimal grids and sample conditions are identified for subsequent high-resolution data collection. Screening is a major bottleneck for new cryoEM projects because grids must be optimized for several factors, including grid type, grid hole size, sample concentration, buffer conditions, ice thickness and particle behavior. Even for mature projects, multiple grids are commonly screened to select a subset for high-resolution data collection. Here, machine learning and novel purpose-built image-processing and microscope-handling algorithms are incorporated into the automated data-collection software Leginon, to provide an open-source solution for fully automated high-throughput grid screening. This new version, broadly called Smart Leginon, emulates the actions of an operator in identifying areas on the grid to explore as potentially useful for data collection. Smart Leginon Autoscreen sequentially loads and examines grids from an automated specimen-exchange system to provide completely unattended grid screening across a set of grids. Comparisons between a multi-grid autoscreen session and conventional manual screening by 5 expert microscope operators are presented. On average, Autoscreen reduces operator time from ∼6 h to <10 min and provides a percentage of suitable images for evaluation comparable to the best operator. The ability of Smart Leginon to target holes that are particularly difficult to identify is analyzed. Finally, the utility of Smart Leginon is illustrated with three real-world multi-grid user screening/collection sessions, demonstrating the efficiency and flexibility of the software package. The fully automated functionality of Smart Leginon significantly reduces the burden on operator screening time, improves the throughput of screening and recovers idle microscope time, thereby improving availability of cryoEM services., (open access.)
- Published
- 2023
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23. Learning to automate cryo-electron microscopy data collection with Ptolemy.
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Kim PT, Noble AJ, Cheng A, and Bepler T
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- Humans, Cryoelectron Microscopy methods, Machine Learning, Data Collection, Software, Algorithms
- Abstract
Over the past decade, cryo-electron microscopy (cryoEM) has emerged as an important method for determining near-native, near-atomic resolution 3D structures of biological macromolecules. To meet the increasing demand for cryoEM, automated methods that improve throughput and efficiency of microscope operation are needed. Currently, the targeting algorithms provided by most data-collection software require time-consuming manual tuning of parameters for each grid, and, in some cases, operators must select targets completely manually. However, the development of fully automated targeting algorithms is non-trivial, because images often have low signal-to-noise ratios and optimal targeting strategies depend on a range of experimental parameters and macromolecule behaviors that vary between projects and collection sessions. To address this, Ptolemy provides a pipeline to automate low- and medium-magnification targeting using a suite of purpose-built computer vision and machine-learning algorithms, including mixture models, convolutional neural networks and U-Nets. Learned models in this pipeline are trained on a large set of images from real-world cryoEM data-collection sessions, labeled with locations selected by human operators. These models accurately detect and classify regions of interest in low- and medium-magnification images, and generalize to unseen sessions, as well as to images collected on different microscopes at another facility. This open-source, modular pipeline can be integrated with existing microscope control software to enable automation of cryoEM data collection and can serve as a foundation for future cryoEM automation software., (open access.)
- Published
- 2023
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24. Smart data collection for CryoEM.
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Bepler T, Borst AJ, Bouvette J, Cannone G, Chen S, Cheng A, Cheng A, Fan Q, Grollios F, Gupta H, Gupta M, Humphreys T, Kim PT, Kuang H, Li Y, Noble AJ, Punjani A, Rice WJ, Oscar S Sorzano C, Stagg SM, Strauss J, Yu L, Carragher B, and Potter CS
- Subjects
- Data Collection
- Abstract
This report provides an overview of the discussions, presentations, and consensus thinking from the Workshop on Smart Data Collection for CryoEM held at the New York Structural Biology Center on April 6-7, 2022. The goal of the workshop was to address next generation data collection strategies that integrate machine learning and real-time processing into the workflow to reduce or eliminate the need for operator intervention., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2022 Elsevier Inc. All rights reserved.)
- Published
- 2022
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25. Mid-term to Long-term Follow-up Results of Reconstruction for Thumb Radial Polydactyly.
- Author
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Lee HJ, Lee KS, Chung SH, Kim HJ, Park KH, Kim PT, and Park SH
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- Child, Preschool, Follow-Up Studies, Humans, Infant, Infant, Newborn, Pain, Range of Motion, Articular, Retrospective Studies, Thumb abnormalities, Thumb surgery, Arthritis, Joint Instability, Polydactyly surgery
- Abstract
Background: Preaxial or radial polydactyly is one of the most common hand congenital anomalies in newborns. Contemporary reconstruction methods include ligament reconstruction, excision of the polydactylous thumb, osteotomy, and other surgical techniques according to the type of polydactyly. The purpose of this study was to report mid-term to long-term reconstruction results for thumb (radial) polydactyly., Methods: We retrospectively reviewed the medical records of patients who underwent reconstruction surgery for preaxial polydactyly. Clinical outcomes, including the range of motion (ROM), pain, and complications, were evaluated. We assessed the final radiographs of the reconstructed thumb to identify the potential development of arthritis or other remaining deformities. After excluding cases without a simple radiograph and cases with a short follow-up period of fewer than 5 years, 26 thumbs were included. The surgical technique followed including excision of polydactylout thumb was tailored to the type of polydactyly. If the nail size of the thumbs was similar, the Bilhaut-Cloquet method was preferred., Results: The mean age of the patients at the surgery and final follow-up was 14.9 months (range: 8 to 30 mo) and 11.9 years (range: 5.8 to 19.3 y), respectively. The mean follow-up was 128.8 months years (range: 60 to 219 mo), and the mean ROM of the thumb was 32.7 and 57.5 degrees in the distal interphalangeal joint (DIP) and metacarpophalangeal (MP) joint, respectively. Ulnar or radial side instability was prominent in 7 patients in the involved joints (26.9%). One patient underwent interphalangeal (IP) fusion for extension lag with pain. The radiologic evaluation revealed that 2 patients developed radiographic evidence of IP joint arthritis (7.7%). Radial deviation of the MP or IP joint existed in 13 cases (range: 5 to 40 degrees) (50.0%), and ulnar deviation of the MP or IP joint existed in 2 cases (range: 19 to 20 degrees) (7.7%)., Conclusions: In mid-term to long-term experience, sequelae such as joint instability, joint stiffness, and remaining deformity cannot be neglected. An unstable MP joint may result if the DIP joint remains stiff or has a lower ROM., Level of Evidence: Level IV-therapeutic studies., Competing Interests: The authors declare no conflicts of interest., (Copyright © 2022 Wolters Kluwer Health, Inc. All rights reserved.)
- Published
- 2022
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26. The association between bacterobilia and the risk of postoperative complications following pancreaticoduodenectomy.
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Parapini ML, Skipworth JRA, Mah A, Desai S, Chung S, Scudamore CH, Segedi M, Vasilyeva E, Li J, and Kim PT
- Subjects
- Bile microbiology, Humans, Pancreatectomy adverse effects, Postoperative Complications epidemiology, Postoperative Complications etiology, Retrospective Studies, Surgical Wound Infection diagnosis, Surgical Wound Infection epidemiology, Pancreaticoduodenectomy adverse effects, Preoperative Care
- Abstract
Background: Pre-operative biliary bacterial colonisation (bacterobilia) is considered a risk factor for infectious complications after pancreaticoduodenectomy (PD). This study aimed to investigate the role of the PD biliary microbiome grown in the development of post-PD complications., Methods: In a retrospective study of 162 consecutive patients undergoing PD (2008-2018), intra-operative bile cultures were analyzed and sensitivities compared to pre-anesthetic antibiotics and thirty-day post-surgery complications., Results: Bacterobilia was present in 136 patients (84%). Most bile cultures grew bacteria resistant to pre-operative antibiotics (n = 112, 82%). Patients with bacterobilia had significantly higher rates of major complication than patients without (P = 0.017), as well as higher rates of surgical-site infections (SSI) (P = 0.010). Patients with negative bile cultures (n = 26) had significantly lower rates of major complication and SSI than those growing sensitive (n = 24) or non-sensitive (n = 112) bacteria (major complication P = 0.029 and SSI P = 0.011)., Conclusion: Positive bile cultures were associated with a higher incidence of major complications and SSI. Patients with sterile bile cultures had the lowest risk of post-operative complications and efforts to reduce rates of bacterobilia, such as limitation of biliary instrumentation, should be considered. Sensitivity to antibiotics had no effect upon the rate of post-operative complications, but this may reflect low cohort numbers., (Crown Copyright © 2021. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2022
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27. Unsupervised Representation Learning for Proteochemometric Modeling.
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Kim PT, Winter R, and Clevert DA
- Subjects
- Ligands, Quantitative Structure-Activity Relationship, Cheminformatics methods, Proteins metabolism, Unsupervised Machine Learning
- Abstract
In silico protein-ligand binding prediction is an ongoing area of research in computational chemistry and machine learning based drug discovery, as an accurate predictive model could greatly reduce the time and resources necessary for the detection and prioritization of possible drug candidates. Proteochemometric modeling (PCM) attempts to create an accurate model of the protein-ligand interaction space by combining explicit protein and ligand descriptors. This requires the creation of information-rich, uniform and computer interpretable representations of proteins and ligands. Previous studies in PCM modeling rely on pre-defined, handcrafted feature extraction methods, and many methods use protein descriptors that require alignment or are otherwise specific to a particular group of related proteins. However, recent advances in representation learning have shown that unsupervised machine learning can be used to generate embeddings that outperform complex, human-engineered representations. Several different embedding methods for proteins and molecules have been developed based on various language-modeling methods. Here, we demonstrate the utility of these unsupervised representations and compare three protein embeddings and two compound embeddings in a fair manner. We evaluate performance on various splits of a benchmark dataset, as well as on an internal dataset of protein-ligand binding activities and find that unsupervised-learned representations significantly outperform handcrafted representations.
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- 2021
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28. Retained Foreign Body Which Should be Suspected as a Cause of Retractable Chronic Hand Inflammation and Diagnostic Capacity of Ultrasonography.
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Suh JD, Jung YS, Lee HJ, Yoon JP, Lee SJ, and Kim PT
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- Adolescent, Adult, Cellulitis etiology, Cellulitis surgery, Chronic Disease, Female, Foreign Bodies surgery, Hand surgery, Humans, Male, Middle Aged, Osteomyelitis etiology, Osteomyelitis surgery, Retrospective Studies, Synovitis surgery, Young Adult, Foreign Bodies diagnostic imaging, Hand diagnostic imaging, Synovitis etiology, Ultrasonography
- Abstract
Background: Foreign bodies in the hand are common but easily and often missed in the initial evaluation of injury. Diagnosing retained foreign bodies is difficult due to radiolucent foreign bodies. Purpose of this study is to emphasize the need of consideration of foreign bodies in patients with chronic synovitis in hand. Methods: Twenty-five patients who had retained foreign body in soft tissue of hand with chronic inflammation symptoms were included. Ultrasonography was conducted in all of the patients. Patient age, sex, localization of foreign body, duration of symptom, history of injury, follow up period, complication, and biopsy results were recorded and reviewed. Also, patients' demographics and clinical results were retrospectively reviewed. Results: Nine of the 25 patients diagnosed with a foreign body in the hand did not remember the initial presentation of injury. The average symptom duration (from injury to hospitalization) was 10.5 months (range 1-96 months). The middle finger and the proximal interphalangeal joint were the most common site of a retained foreign body (10 patients). All patients were diagnosed via ultrasonography and underwent surgery. Biopsy results showed mainly chronic inflammation, fibrosis, granuloma, and foreign bodies. Conclusions: Patient with symptoms of cellulitis, osteomyelitis, and palpable mass in hand for over a month without a diagnosis should be suspected of retained FBs.
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- 2020
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29. Minimally invasive hepatectomy is associated with decreased morbidity and resource utilization in the elderly.
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Tee MC, Chen L, Peightal D, Franko J, Kim PT, Brahmbhatt RD, Raman S, Scudamore CH, Chung SW, and Segedi M
- Subjects
- Aged, Elective Surgical Procedures methods, Female, Humans, Length of Stay, Liver Neoplasms epidemiology, Male, Middle Aged, Morbidity trends, Postoperative Period, Retrospective Studies, United States epidemiology, Hepatectomy methods, Laparoscopy methods, Liver Neoplasms surgery, Postoperative Complications epidemiology, Propensity Score
- Abstract
Background: The aim of this study was to evaluate whether elderly patients undergoing elective hepatectomy experience increased morbidity/mortality and whether these outcomes could be mitigated by minimally invasive hepatectomy (MIH)., Methods: 15,612 patients from 2014 to 2017 were identified in the Hepatectomy Targeted Procedure Participant Use File of the American College of Surgeons National Surgical Quality Improvement Program. Multivariable logistic regression models were constructed to examine the effect of elderly status (age ≥ 75 years, N = 1769) on outcomes with a subgroup analysis of elderly only patients by open (OH) versus MIH (robotic, laparoscopic, and hybrid, N = 4044). Propensity score matching was conducted comparing the effect of MIH to OH in elderly patients to ensure that results are not the artifact of imbalance in baseline characteristics., Results: Overall, elderly patients had increased risk for 30-day mortality, major morbidity, prolonged length of hospital stay, and discharge to destination other than home. In the elderly subgroup, MIH was associated with decreased major morbidity (OR 0.71, P = 0.031), invasive intervention (OR 0.61, P = 0.032), liver failure (OR 0.15, P = 0.011), bleeding (OR 0.46, P < 0.001), and prolonged length of stay (OR 0.46, P < 0.001). Propensity score-matched analyses successfully matched 4021 pairs of patients treated by MIH vs. OH, and logistic regression analyses on this matched sample found that MIH was associated with decreased major complications (OR 0.69, P = 0.023), liver failure (OR 0.14, P = 0.010), bile leak (OR 0.46, P = 0.009), bleeding requiring transfusion (OR 0.46, P < 0.001), prolonged length of stay (OR 0.46, P < 0.001), and discharge to destination other than home (OR 0.691, P = 0.035) compared to OH., Conclusion: MIH is associated with decreased risk of major morbidity, liver failure, bile leak, bleeding, prolonged length of stay, and discharge to destination other than home among elderly patients in this retrospective study. However, MIH in elderly patients does not protect against postoperative mortality.
- Published
- 2020
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30. Impact of surgical wait times on oncologic outcomes in resectable pancreas adenocarcinoma.
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Vasilyeva E, Li J, Desai S, Chung SW, Scudamore CH, Segedi M, and Kim PT
- Subjects
- Humans, Pancreas, Retrospective Studies, Waiting Lists, Adenocarcinoma surgery, Pancreatic Neoplasms surgery
- Abstract
Background: Timely surgical resection in patients with suspected or diagnosed pancreas adenocarcinoma is an essential part of care. We hypothesized that longer surgical wait time was associated with worse oncologic outcomes., Methods: A retrospective cohort of patients (N = 144) with resectable pancreas adenocarcinoma was divided into four wait time groups (<4, 4-8, 8-12, and >12 weeks), defined from the time of diagnosis on cross-sectional imaging. Overall and recurrence-free survival were analyzed using the Kaplan-Meier method and Cox proportional hazards regression. A higher rate of conversion to palliative bypass in patients waiting over 4 weeks was observed and further analyzed using post-hoc multivariate regression., Results: On multivariable analysis, longer wait time was associated with improved overall (HR 0.49, 95% CI: 0.28-0.85) and recurrence-free survival (HR 0.29, 95% CI: 0.15-0.56) in >12 weeks compared to <4 weeks group. On post-hoc analysis, longer wait time over 8 weeks was positively associated with palliative bypass (OR 5.33, 95% CI: 1.32-27.88)., Conclusion: Wait time over 8 weeks was associated with a higher rate of palliative bypass. There was an improvement in overall and recurrence-free survival in patients who waited over 12 weeks, likely due to selection bias., (Copyright © 2019 International Hepato-Pancreato-Biliary Association Inc. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2020
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31. Precision medicine and gut dysbiosis.
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Harris C, Kim PT, Waterhouse D, Feng Z, Niergarth J, and Lee CH
- Subjects
- Canada, Fecal Microbiota Transplantation, Gastrointestinal Microbiome, Health Status, Humans, Quality of Life, Clostridium Infections therapy, Dysbiosis therapy, Precision Medicine
- Abstract
Clostridioides difficile Infection (CDI) is a leading cause of healthcare-associated infections in Canada, affecting the gastrointestinal tract which can lead to fever, abdominal pain, and diarrhea. Effective treatment for patients with Recurrent CDI (rCDI) can be achieved by Fecal Microbiota Transplantation (FMT) by introducing the gut micro-organisms of a healthy person (donor) into the bowel of the affected individual. Research has shown that an increase in the specific bacterial phyla post-FMT may be partly responsible for this gut restoration and elimination of disease. Furthermore, in understanding the key bacteria associated with successful FMT, full treatment plans can be developed for the individual needs of the patient by matching an infected individual with a donor possessing ideal microbiota for the specific patient. This development of precision medicine and more systematic adoption of FMT can be the next step toward more rapid resolution of rCDI.
- Published
- 2020
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32. Efficacy and Safety of Patient-controlled Analgesia Compared With Epidural Analgesia After Open Hepatic Resection: A Systematic Review and Meta-analysis.
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Li J, Pourrahmat MM, Vasilyeva E, Kim PT, Osborn J, and Wiseman SM
- Subjects
- Analgesics, Opioid administration & dosage, Blood Transfusion, Hematoma, Epidural, Spinal etiology, Humans, Infusions, Intravenous, Length of Stay, Patient Satisfaction, Postoperative Complications, Analgesia, Epidural adverse effects, Analgesia, Epidural methods, Analgesia, Patient-Controlled adverse effects, Analgesia, Patient-Controlled methods, Hepatectomy adverse effects, Pain, Postoperative prevention & control
- Abstract
Objective: To compare the efficacy and safety of patient-controlled analgesia (PCA) to epidural analgesia in adults undergoing open hepatic resection., Background: Effective pain management in patients undergoing open hepatic resection is often achieved with epidural analgesia. However, associated risks have prompted investigation of alternative analgesic methods in this patient population., Methods: A comprehensive systematic literature review via Medline, Embase, and the Cochrane databases from inception until December 2, 2017 was conducted, followed by meta-analysis. Abstract and full-text screening, data extraction, and quality assessment were conducted by 2 investigators. Odds ratios (OR), mean differences (MD), and 95% confidence intervals were calculated using RevMan 5.3., Results: Four randomized controlled trials with 278 patients were identified. All studies compared the use of PCA to epidural, with differing regimens. Pooled MD and 95% confidence interval for pain score were higher for PCA at rest 24 hours postoperatively (0.59 [0.30, 0.88]), and with movement at 48 hours postoperatively (0.95 [0.31, 1.60]. Pooled MD for hospital length of stay was 1.23 days (-2.72, 5.19). Pooled OR was 0.68 (0.36, 1.3) and 0.24 (0.04, 1.36) for overall and analgesia-related complications, respectively. Need for blood transfusion had a pooled OR of 1.14 (0.31, 4.18)., Conclusions: Epidural analgesia was observed to be superior to PCA for pain control in patients undergoing open hepatic resection, with no significant difference in hospital length of stay, complications, or transfusion requirements. Thus, epidural analgesia should be the preferred method for the management of postoperative pain in this patient population.
- Published
- 2019
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33. Modified Transosseous Wiring Technique for Neglected Fracture-Dislocation of the Proximal Interphalangeal Joint.
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Kim HJ, Lee HJ, Kim PT, Kyung HS, Oh JW, and Lee SJ
- Subjects
- Adult, Aged, Debridement, Disability Evaluation, Female, Finger Injuries diagnostic imaging, Finger Joint diagnostic imaging, Fracture Dislocation diagnostic imaging, Humans, Male, Middle Aged, Range of Motion, Articular, Time-to-Treatment, Bone Wires, Finger Injuries surgery, Finger Joint surgery, Fracture Dislocation surgery, Fracture Fixation, Intramedullary methods
- Abstract
Background: Fracture-dislocation of the proximal interphalangeal (PIP) joint of the finger is challenging due to the high risk of stiffness. The purpose of this study is to evaluate the clinical and radiological results of a modified transosseous wiring technique for the management of chronic fracture-dislocations of the PIP joint., Methods: Ten patients (nine men and one woman; mean age, 38.3 years; range, 21 to 69 years) with neglected fracture-dislocation of the PIP joint were included. The mean duration from injury to operation was 14.7 weeks (range, 3 to 66 weeks). The dorsolateral approach and extension block pinning were used to reduce dislocation. After thorough debridement of the scar tissues in the dorsal dead space and the fracture site, the reduction was maintained with transosseous wiring. Radiologic evaluations of bone union and arthritic changes and clinical evaluations (range of motion of the PIP joint and Disabilities of the Arm, Shoulder and Hand [DASH] score) were performed. The mean follow-up period was 12.9 months (range, 12 to 19 months)., Results: All patients demonstrated evidence of radiographic healing within a mean healing time of 6 weeks (range, 4 to 10 weeks); however, one had a widened gap and one had an early arthritic change. The mean range of motion in the PIP joint was 81° (range, 50° to 105°). The mean DASH score was 21.6 (range, 7.5 to 35.8)., Conclusions: For chronic fracture-dislocation of the PIP joint, transosseous wiring with direct curettage and optimal bone purchase can provide satisfying outcome., Competing Interests: CONFLICT OF INTEREST: No potential conflict of interest relevant to this article was reported.
- Published
- 2019
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34. Comparison of hip extensor muscle activity including the adductor magnus during three prone hip extension exercises.
- Author
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Ko HI PT, Jeon SY PT, Kim SH PT, PhD, and Park KN PT, PhD
- Subjects
- Adult, Biomechanical Phenomena, Electromyography, Female, Hamstring Muscles physiology, Humans, Male, Preliminary Data, Range of Motion, Articular, Young Adult, Hip Joint physiology, Muscle Contraction, Muscle, Skeletal physiology
- Abstract
Objectives: This study compared the role of the adductor magnus muscle (Amag) as a hip extensor while performing active prone hip extension (PHE), PHE with hip adduction (PHE-ADD), and PHE with hip abduction (PHE-ABD) with the gluteus maximus (Gmax) and hamstrings., Methods: The study recruited 22 healthy participants. Electromyography data were recorded from the Amag, Gmax, and medial and lateral hamstrings during PHE, PHE-ADD, and PHE-ABD. Normalized electromyographic data were examined using one-way, repeated-measures analyses of variance., Results: The magnitude of the Amag, Gmax, and hamstring activations did not differ significantly while performing PHE (p = 0.41). Furthermore, the Amag and hamstring activations were significantly greater than the Gmax activation when performing PHE-ADD (p < 0.05). The Gmax showed significantly greater activation during PHE-ABD than the Amag and medial and lateral hamstrings (p < 0.05)., Conclusions: Based on these results, we advocate including the Amag as a hip extensor during the PHE test or exercise. Our preliminary results have the potential to be applied directly to the PHE test, for investigating the muscle-activation pattern of the Amag with the Gmax and hamstrings in patients with hip or lower back pain.
- Published
- 2019
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35. Corrigendum to "Recipient characteristics and morbidity and mortality after liver transplantation" [J hepatol 69 (2018) 43-50].
- Author
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Asrani SK, Saracino G, O'Leary JG, Gonzalez S, Kim PT, McKenna GJ, Klintmalm G, and Trotter J
- Published
- 2018
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36. Recipient characteristics and morbidity and mortality after liver transplantation.
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Asrani SK, Saracino G, O'Leary JG, Gonzalez S, Kim PT, McKenna GJ, Klintmalm G, and Trotter J
- Subjects
- End Stage Liver Disease surgery, Female, Humans, Male, Middle Aged, Morbidity trends, Postoperative Period, Prognosis, Retrospective Studies, Risk Factors, Survival Rate trends, United States epidemiology, End Stage Liver Disease epidemiology, Graft Survival, Liver Transplantation, Transplant Recipients
- Abstract
Background and Aims: Over the last decade, liver transplantation of sicker, older non-hepatitis C cirrhotics with multiple co-morbidities has increased in the United States. We sought to identify an easily applicable set of recipient factors among HCV negative adult transplant recipients associated with significant morbidity and mortality within five years after liver transplantation., Methods: We collected national (n = 31,829, 2002-2015) and center-specific data. Coefficients of relevant recipient factors were converted to weighted points and scaled from 0-5. Recipient factors associated with graft failure included: ventilator support (five patients; hazard ratio [HR] 1.59; 95% CI 1.48-1.72); recipient age >60 years (three patients; HR 1.29; 95% CI 1.23-1.36); hemodialysis (three patients; HR 1.26; 95% CI 1.16-1.37); diabetes (two patients; HR 1.20; 95% CI 1.14-1.27); or serum creatinine ≥1.5 mg/dl without hemodialysis (two patients; HR 1.15; 95% CI 1.09-1.22)., Results: Graft survival within five years based on points (any combination) was 77.2% (0-4), 69.1% (5-8) and 57.9% (>8). In recipients with >8 points, graft survival was 42% (model for end-stage liver disease [MELD] score <25) and 50% (MELD score 25-35) in recipients receiving grafts from donors with a donor risk index >1.7. In center-specific data within the first year, subjects with ≥5 points (vs. 0-4) had longer hospitalization (11 vs. 8 days, p <0.01), higher admissions for rehabilitation (12.3% vs. 2.7%, p <0.01), and higher incidence of cardiac disease (14.2% vs. 5.3%, p <0.01) and stage 3 chronic kidney disease (78.6% vs. 39.5%, p = 0.03) within five years., Conclusion: The impact of co-morbidities in an MELD-based organ allocation system need to be reassessed. The proposed clinical tool may be helpful for center-specific assessment of risk of graft failure in non-HCV patients and for discussion regarding relevant morbidity in selected subsets., Lay Summary: Over the last decade, liver transplantation of sicker, older patient with multiple co-morbidities has increased. In this study, we show that a set of recipient factors (recipient age >60 years, ventilator status, diabetes, hemodialysis and creatinine >1.5 mg/dl) can help identify patients that may not do well after transplant. Transplanting sicker organs in patients with certain combinations of these characteristics leads to lower survival., (Copyright © 2018 European Association for the Study of the Liver. Published by Elsevier B.V. All rights reserved.)
- Published
- 2018
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37. Risk factors for early readmission after total pancreatectomy and islet auto transplantation.
- Author
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Shahbazov R, Naziruddin B, Yadav K, Saracino G, Yoshimatsu G, Kanak MA, Beecherl E, Kim PT, and Levy MF
- Subjects
- Adult, Female, Humans, Male, Middle Aged, Postoperative Complications diagnosis, Postoperative Complications therapy, Retrospective Studies, Risk Assessment, Risk Factors, Time Factors, Transplantation, Autologous adverse effects, Treatment Outcome, Islets of Langerhans Transplantation adverse effects, Pancreatectomy adverse effects, Patient Readmission, Postoperative Complications etiology
- Abstract
Background: Little published data exist examining causes of hospital readmission following total pancreatectomy with islet autotransplantation (TPIAT)., Methods: A retrospective analysis was performed of a prospectively collected institutional TPIAT database. Primary outcome was unplanned readmission to the hospital within 30 days from discharge. Reasons and risk factors for readmission as well as islet function were evaluated and compared by univariate and multivariate analysis., Results: 83 patients underwent TPIAT from 2006 to 2014. 21 patients (25.3%) were readmitted within 30 days. Gastrointestinal problems (52.4%) and surgical site infection (42.8%) were the most common reasons for readmission. Initial LOS and reoperation were risk factors for early readmission. Patients with delayed gastric emptying (DGE) were three times more likely to get readmitted. In multivariate analysis, patients undergoing pylorus preservation surgery were nine times more likely to be readmitted than the antrectomy group., Conclusion: Early readmission after TPIAT is common (one in four patients), underscoring the complexity of this procedure. Early readmission is not detrimental to islet graft function. Patients undergoing pylorus preservation are more likely to get readmitted, perhaps due to increased incidence of delayed gastric emptying. Decision for antrectomy vs. pylorus preservation needs to be individualized., (Copyright © 2017 International Hepato-Pancreato-Biliary Association Inc. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2018
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38. Consistent screening of admitted infants with head injuries reveals high rate of nonaccidental trauma.
- Author
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Kim PT, McCagg J, Dundon A, Ziesler Z, Moody S, and Falcone RA Jr
- Subjects
- Child Abuse statistics & numerical data, Craniocerebral Trauma epidemiology, Female, Humans, Infant, Insurance Coverage statistics & numerical data, Intensive Care Units, Pediatric, Male, Medically Uninsured statistics & numerical data, Radiography, Retrospective Studies, United States, Child Abuse diagnosis, Craniocerebral Trauma diagnosis, Mass Screening statistics & numerical data, Trauma Severity Indices
- Abstract
Purpose: Implementation of a nonaccidental trauma (NAT) screening guideline for the evaluation of infants admitted with an unwitnessed head injury has eliminated screening disparities. This study sought to determine the overall NAT rate and key predictive factors using this guideline., Methods: All infants screened via the guideline from 2008 to 2015 were retrospectively reviewed. The overall rate of NAT as determined by our child abuse team was determined. In addition, a logistic regression model was developed to evaluate potential predictors of increased risk of NAT., Results: A total of 563 infants were screened with an overall rate of NAT of 25.6% (n=144). NAT screening was consistent across race and insurance status. By univariate analysis, patients with government insurance or no insurance had a significantly higher rate of NAT, but race was not a factor. Also NAT victims had significantly higher ISS. Skeletal survey showed high positive predictive value of 94%. When regression modeling was performed, ISS, abnormal skeletal survey and having public or no insurance were significantly correlated with NAT, while race showed no correlation., Conclusion: One quarter of infants admitted with a head injury not witnessed in a public situation were identified as the victims of NAT. The high rate of abuse among this population supports routine screening in order to avoid missing intentional injuries and preventing future injuries. Race is not a predictor of NAT, but insurance status, as a proxy for socioeconomic status, is correlated, and further investigation is needed., Level of Evidence: III., (Copyright © 2017 Elsevier Inc. All rights reserved.)
- Published
- 2017
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39. The impact of allogenic blood transfusion on the outcomes of total pancreatectomy with islet autotransplantation.
- Author
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Yoshimatsu G, Shahbazov R, Saracino G, Lawrence MC, Kim PT, Onaca N, Beecherl EE, Naziruddin B, and Levy MF
- Subjects
- Adult, Cytokines blood, Female, Glycated Hemoglobin analysis, Humans, Insulin therapeutic use, Male, Middle Aged, Retrospective Studies, Transplantation, Autologous, Treatment Outcome, Blood Transfusion, Islets of Langerhans Transplantation methods, Pancreatectomy methods
- Abstract
Background: Allogenic blood transfusion (ABT) may be needed for severe bleeding during total pancreatectomy with autotransplantation (TPIAT), but may induce inflammation. This study investigated the impact of ABT., Methods: With a population of 83 patients who underwent TPIAT from 2006 to 2014, this study compared cytokine levels, patient characteristics, islet characteristics, metabolic outcomes, insulin requirements, and hemoglobin A1c for those who received a blood transfusion (BT) versus no blood transfusion (NBT)., Results: Initially, proinflammatory cytokines were moderately higher in the BT group than the NBT group. Despite longer procedures and more severe bleeding, the BT group had similar values to the NBT group for insulin requirements, serum C-peptide, hemoglobin A1c, and insulin independence rate. The probability of insulin independence was slightly higher in patients receiving ≥3 units of blood., Conclusion: ABT induced elevation of proinflammatory cytokines during the perioperative period in TPIAT, but these changes did not significantly change posttransplant islet function., (Copyright © 2017 Elsevier Inc. All rights reserved.)
- Published
- 2017
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40. The Characteristics of Aborted Procedures in Total Pancreatectomy With Islet Autotransplantation for Chronic Pancreatitis.
- Author
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Shahbazov R, Yoshimatsu G, Dabous A, Lawrence MC, Kim PT, Onaca N, Beecherl E, Naziruddin B, and Levy MF
- Subjects
- Adult, Disease Progression, Female, Humans, Male, Middle Aged, Outcome Assessment, Health Care, Pain etiology, Pain prevention & control, Pancreatitis, Chronic complications, Pancreatitis, Chronic pathology, Patient Selection, Risk Factors, Tissue Adhesions complications, Transplantation, Autologous, Islets of Langerhans Transplantation methods, Pancreatectomy methods, Pancreatitis, Chronic surgery
- Published
- 2017
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41. Untethering physiolysis for delta phalanx (longitudinally bracketed diaphysis) combined with free fat interposition graft.
- Author
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Lee HJ, Kim PT, Jeon IH, Deslivia MF, Lee SJ, Kim HJ, and Yoon JP
- Subjects
- Child, Female, Humans, Male, Range of Motion, Articular, Retrospective Studies, Adipose Tissue transplantation, Finger Phalanges abnormalities, Finger Phalanges surgery, Hand Deformities, Congenital surgery, Orthopedic Procedures methods
- Abstract
We report the results of physiolysis of the epiphyseal bracket combined with free fat grafting for the treatment of delta phalanx. Thirteen cases (five patients) were included. Mean patient age was 6.6years (range, 4-9). The patients underwent physiolysis in which the epiphyseal bracket was cut and replaced with a free fat graft. The angle between the long axis of the proximal and distal phalanges and the ratio between the width and length of the affected middle phalanx were evaluated on plain radiographs. The range of motion in the fingers was also evaluated. The mean follow-up period was 42.2months (range, 25-61). The mean correction angle was 17.1° (range; 13-23). The mean width-to-length ratio of the affected phalanx was improved from 0.6 to 0.47. The range of motion was maintained at the previous level. Physiolysis by untethering the bracketing epiphysis and free fat grafting can alleviate the angulation of clinodactyly, especially in growing children. It also allows catch-up growth in the middle phalanx., (Copyright © 2017 SFCM. Published by Elsevier Masson SAS. All rights reserved.)
- Published
- 2017
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42. Fighting Mortality in the Waiting List: Liver Transplantation in North America, Europe, and Asia.
- Author
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Zamora-Valdes D, Leal-Leyte P, Kim PT, and Testa G
- Subjects
- Age Factors, Asia, Donor Selection, End Stage Liver Disease diagnosis, Europe, Humans, Liver Transplantation adverse effects, Liver Transplantation mortality, Living Donors, North America, Risk Factors, Time Factors, Treatment Outcome, End Stage Liver Disease mortality, End Stage Liver Disease surgery, Health Services Accessibility, Liver Transplantation methods, Waiting Lists mortality
- Abstract
Liver disease is a major cause of mortality worldwide. Liver transplantation (LT) is the most effective treatment for end stage liver disease. Available resources and social circumstances have led to different ways of implementing LT around the world. The experience with pediatric LT corroborates the hypothesis that a combination of surgical strategies can be beneficial. The goal of this manuscript is to describe the strategies used by LT centers in North America, Europe and Asia and how these strategies can be applied to reduce waitlist mortality and increase access to LT.
- Published
- 2017
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43. Clinical effectiveness of a pylorus-preserving procedure on total pancreatectomy with islet autotransplantation.
- Author
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Shahbazov R, Yoshimatsu G, Haque WZ, Khan OS, Saracino G, Lawrence MC, Kim PT, Onaca N, Naziruddin B, and Levy MF
- Subjects
- Adult, Female, Graft Survival, Humans, Male, Middle Aged, Nutritional Status, Pylorus, Retrospective Studies, Treatment Outcome, Islets of Langerhans Transplantation, Pancreatectomy, Pancreatitis, Chronic surgery
- Abstract
Background: The impact of pylorus preserving procedures (PP) on total pancreatectomy with islet autotransplantation (TPIAT) has not been examined. This study aimed to investigate the clinical impact of the PP on TPIAT., Methods: The Baylor Simmons Transplant Institute database was queried to identify seventy-three patients who underwent TPIAT from 2006 to 2014. All patients were investigated in postoperative complications, long-term nutritional status, and graft function., Results: Patients with PP did not face worse outcomes in terms of delayed gastric emptying and length of hospital stay. Also, nutritional status and metabolic outcome, such as body weight, serum albumin level, serum vitamin level, HbA1c level, graft survival rate and insulin independent rate, were similar between both groups., Conclusions: Clinical results including the graft function indicated that patients undergoing TPIAT with PP did not amplify surgical complications such as delayed gastric emptying and showed no significant advantage of nutrition and metabolic outcome., (Copyright © 2016 Elsevier Inc. All rights reserved.)
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- 2017
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44. Elbow locking in a patient with a congenital radial head dislocation: Case report.
- Author
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Kim HJ, Kim PT, Lee HJ, and Deslivia MF
- Subjects
- Adolescent, Elbow Joint physiopathology, Humans, Joint Dislocations physiopathology, Joint Dislocations surgery, Magnetic Resonance Imaging, Male, Radiography, Range of Motion, Articular, Elbow Joint diagnostic imaging, Elbow Joint surgery, Joint Dislocations congenital, Joint Dislocations diagnostic imaging, Ligaments, Articular surgery
- Abstract
Snapping elbow is a rare condition, which has various possible causes such as impinged plica, annular ligament, or other extra-articular causes. We report a case of 15-year-old boy who had snapping elbow and sudden-onset flexion contracture of the elbow. Simple radiographs showed bilateral anterior dislocation of hypoplastic radial heads. Magnetic resonance images with the elbow extended as much as possible showed that the annular ligament hemmed the dislocated radial neck. By surgical incision of the annular ligament which checkreined the radial neck, the patients could regain full extension of the elbow. We recommend careful consideration of surgical excision of ligamentous structure which blocks extension in the patients who have history of snapping elbow with congenital radial head dislocation., (Copyright © 2017 Elsevier Masson SAS. All rights reserved.)
- Published
- 2017
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45. Low Measured Hepatic Artery Flow Increases Rate of Biliary Strictures in Deceased Donor Liver Transplantation: An Age-Dependent Phenomenon.
- Author
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Kim PT, Fernandez H, Gupta A, Saracino G, Ramsay M, McKenna GJ, Testa G, Anthony T, Onaca N, Ruiz RM, and Klintmalm GB
- Subjects
- Adult, Age Factors, Anastomosis, Surgical, Biliary Tract Surgical Procedures adverse effects, Blood Flow Velocity, Cause of Death, Chi-Square Distribution, Cholestasis diagnosis, Female, Graft Survival, Hepatic Artery physiopathology, Humans, Kaplan-Meier Estimate, Male, Middle Aged, Multivariate Analysis, Regional Blood Flow, Retrospective Studies, Risk Factors, Time Factors, Treatment Outcome, Cholestasis etiology, Hepatic Artery surgery, Liver Transplantation adverse effects, Tissue Donors
- Abstract
Background: This study was conducted to determine effect of lower measured hepatic arterial (HA) flow (<400 mL/min) on biliary complications and graft survival after deceased donor liver transplantation. Hepatic artery is the main blood supply to bile duct and lack of adequate HA flow is thought to be a risk factor for biliary complications., Methods: A retrospective review of 1300 patients who underwent deceased donor liver transplantation was performed. Patients with arterial complications were excluded to eliminate potential contribution to biliary complications from HA thrombosis. Patients were divided into low (<400 mL/min; N = 201) and high (≥400 mL/min; N = 1099) HA flow groups. Incidence of biliary complications and graft survival were analyzed., Results: HA flows less than 400 mL/min were associated with increased rate of biliary strictures in younger donors (<50 years old), and in patients with duct-to-duct anastomoses (P = 0.028). Lower HA flows were associated with decreased graft survival (P = 0.013). Donor older than 50 years was associated with increased rate of biliary strictures (hazard ratio [HR], 1.67; 95% confidence interval [CI], 1.14-2.45; P = 0.0085) and graft failure (HR, 1.68; 95% CI, 1.35-2.1; P <0.0001) on multivariate analyses. HA flow less than 400 mL/min was associated with biliary strictures (HR, 1.53; 95% CI, 1.04-2.24; P = 0.0297) on univariate analysis only., Conclusions: HA flow less than 400 mL/min was associated with higher rate of biliary strictures in younger donors with duct-to-duct reconstruction and lower graft survival. A consideration should be given to increase the intraoperative HA flow to prevent biliary strictures in such patients.
- Published
- 2017
- Full Text
- View/download PDF
46. The use of telemedicine in the care of the pediatric trauma patient.
- Author
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Kim PT and Falcone RA Jr
- Subjects
- Child, Humans, Telemedicine, Wounds and Injuries diagnosis, Wounds and Injuries therapy
- Abstract
Telemedicine is increasingly becoming an important part of the health care system as it has the potential to help deliver quality medical care to underserved areas. When implemented correctly, it can be a cost-effective way of expanding access to excellent medical care. However, because it is a relatively new and quickly changing field, there are multiple issues and challenges that need to be addressed. This article reviews the current literature on various modalities of telemedicine, evidence for teletrauma, and challenges and barriers related to telemedicine., (Copyright © 2017 Elsevier Inc. All rights reserved.)
- Published
- 2017
- Full Text
- View/download PDF
47. Nonaccidental Trauma in Pediatric Surgery.
- Author
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Kim PT and Falcone RA Jr
- Subjects
- Child, Humans, Disease Management, Surgical Procedures, Operative methods, Wounds and Injuries surgery
- Abstract
This article presents an overview of nonaccidental trauma in children, including common clinical presentation, evaluation, and diagnosis., (Copyright © 2016 Elsevier Inc. All rights reserved.)
- Published
- 2017
- Full Text
- View/download PDF
48. Fate of Arsenic during Red River Water Infiltration into Aquifers beneath Hanoi, Vietnam.
- Author
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Postma D, Mai NT, Lan VM, Trang PT, Sø HU, Nhan PQ, Larsen F, Viet PH, and Jakobsen R
- Subjects
- Environmental Monitoring, Groundwater, Vietnam, Water Pollutants, Chemical, Water Supply, Arsenic, Rivers
- Abstract
Recharge of Red River water into arsenic-contaminated aquifers below Hanoi was investigated. The groundwater age at 40 m depth in the aquifer underlying the river was 1.3 ± 0.8 years, determined by tritium-helium dating. This corresponds to a vertical flow rate into the aquifer of 19 m/year. Electrical conductivity and partial pressure of CO
2 (PCO ) indicate that water recharged from the river is present in both the sandy Holocene and gravelly Pleistocene aquifers and is also abstracted by the pumping station. Infiltrating river water becomes anoxic in the uppermost aquifer due to the oxidation of dissolved organic carbon. Further downward, sedimentary carbon oxidation causes the reduction of As-containing Fe-oxides. Because the release of arsenic by reduction of Fe-oxides is controlled by the reaction rate, arsenic entering the solution becomes highly diluted in the high water flux and contributes little to the groundwater arsenic concentration. Instead, the As concentration in the groundwater of up to 1 μM is due to equilibrium-controlled desorption of arsenic, adsorbed to the sediment before river water started to infiltrate due to municipal pumping. Calculations indicate that it will take several decades of river water infiltration to leach arsenic from the Holocene aquifer to below the World Health Organization limit of 10 μg/L., Competing Interests: The authors declare no competing financial interest.2 - Published
- 2017
- Full Text
- View/download PDF
49. Long-term results of single-stage reduction surgery for the treatment of macrodactyly.
- Author
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Lee HJ, Kim PT, Lee SJ, Kim HJ, Jeon IH, and Seo I
- Abstract
We report the long-term results of a single-stage reduction procedure for the treatment of macrodactyly. Six patients (eight cases) were included. These patients underwent a single-stage operation that included debulking with resection of the hypertrophied digital nerve and distal interphalangeal joint fusion or corrective osteotomy. Plain radiographs and functional parameters were assessed. Aesthetic improvement was achieved in all patients. The mean ratios of the lengths and circumference differences between the affected digit and the corresponding normal digit on the other hand were 1:1 and 1:1, respectively. The mean range of motion in the proximal interphalangeal joint was 76°. A sensory deficit in the lateral pulp of the distal phalangeal area was observed in three fingers. The Disabilities of the Arm, Shoulder and Hand score ranged from 0 to 9 (mean 4). The long-term results of the single-stage reduction procedure were satisfactory, as demonstrated by the excellent adjustment of the length and acceptable circumference of the affected digits., Level of Evidence: IV.
- Published
- 2017
- Full Text
- View/download PDF
50. A model for the evolution in water chemistry of an arsenic contaminated aquifer over the last 6000 years, Red River floodplain, Vietnam.
- Author
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Postma D, Trang PT, Sø HU, Van Hoan H, Lan VM, Thai NT, Larsen F, Viet PH, and Jakobsen R
- Abstract
Aquifers on the Red River flood plain with burial ages ranging from 500 to 6000 years show, with increasing age, the following changes in solute concentrations; a decrease in arsenic, increase in Fe(II) and decreases in both pH, Ca and bicarbonate. These changes were interpreted in terms of a reaction network comprising the kinetics of organic carbon degradation, the reduction kinetics of As containing Fe-oxides, the sorption of arsenic, the kinetics of siderite precipitation and dissolution, as well as of the dissolution of CaCO
3 . The arsenic released from the Fe-oxide is preferentially partitioned into the water phase, and partially sorbed, while the released Fe(II) is precipitated as siderite. The reaction network involved in arsenic mobilization was analyzed by 1-D reactive transport modeling. The results reveal complex interactions between the kinetics of organic matter degradation and the kinetics and thermodynamic energy released by Fe-oxide reduction. The energy released by Fe-oxide reduction is strongly pH dependent and both methanogenesis and carbonate precipitation and dissolution have important influences on the pH. Overall it is the rate of organic carbon degradation that determines the total electron flow. However, the kinetics of Fe-oxide reduction determines the distribution of this flow of electrons between methanogenesis, which is by far the main pathway, and Fe-oxide reduction. Modeling the groundwater arsenic content over a 6000 year period in a 20 m thick aquifer shows an increase in As during the first 1200 years where it reaches a maximum of about 600 μg/L. During this initial period the release of arsenic from Fe-oxides actually decreases but the adsorption of arsenic onto the sediment delays the build-up in the groundwater arsenic concentration. After 1200 years the groundwater arsenic content slowly decreases controlled both by desorption and continued further, but diminishing, release from Fe-oxide being reduced. After 6000 years the arsenic content has decreased to 33 μg/L. The modeling enables a quantitative description of how the aquifer properties, the reactivity of organic carbon and Fe-oxides, the number of sorption sites and the buffering mechanisms change over a 6000 year period and how the combined effect of these interacting processes controls the groundwater arsenic content.- Published
- 2016
- Full Text
- View/download PDF
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