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Journal impact factors were devised to qualify and compare university library holdings but are frequently repurposed for use in ranking applications, research papers, and even individual applicants in mycology and beyond. The widely held assumption that mycological studies published in journals with high impact factors add more to systematic mycology than studies published in journals without high impact factors nevertheless lacks evidential underpinning. The present study uses the species hypothesis system of the UNITE database for molecular identification of fungi and other eukaryotes to trace the publication history and impact factor of sequences uncovering new fungal species hypotheses. The data show that journal impact factors are poor predictors of discovery potential in systematic mycology. There is no clear relationship between journal impact factor and the discovery of new species hypotheses for the years 2000–2021. On the contrary, we found journals with low, and even no, impact factor to account for substantial parts of the species hypothesis landscape, often discovering new fungal taxa that are only later picked up by journals with high impact factors. Funding agencies and hiring committees that insist on upholding journal impact factors as a central funding and recruitment criterion in systematic mycology should consider using indicators such as research quality, productivity, outreach activities, review services for scientific journals, and teaching ability directly rather than using publication in high impact factor journals as a proxy for these indicators.

Several similar indicators in Nevada (USA) and South Yakutia (Russia) gold-bearing provinces have been identified based on modern tectonic, geophysical and seismic tomography observations, followed by the analysis of the main geodynamic factors of the formation and distribution of large gold-bearing provinces in the North Pacific. One of the significant metallogenic peculiarities is a wide variety of formational and mineral deposits concentrated in the areas. Both provinces are situated at active margins surrounded by fold-thrust belts. In South Yakutia, a combination of sublatitudinal Baikal-Elkon-Ulkan and submeridional Seligdar-Verkhnetimpon gravity field gradient zones is recorded. In contrast, significant positive gravity anomalies of the Northern Nevada Rift and higher-order gradient zones are presented in Nevada. Large pluton and transform fault zones in both provinces support a conclusion about the fundamental role of geodynamic factors in developing ore-magmatic systems in the regions. Significant differences in the scale of the gold mineralization in the considered provinces are explained by the existence under the North American continent not only of the Mendocino transform fault zone but also of the Juan de Fuca paleo-spreading center. In contrast, the Inagli-Konder-Feklistov magmatic-metallogenic belt alone controls mineralization under the Asian continent.

Hepatitis C virus (HCV) is an oncogenic virus that causes chronic liver disease in more than 80% of patients. During the last decade, efficient direct-acting antivirals were introduced into clinical practice. However, clearance of the virus does not reduce the risk of end-stage liver diseases to the level observed in patients who have never been infected. So, investigation of HCV pathogenesis is still warranted. Virus-induced changes in cell metabolism contribute to the development of HCV-associated liver pathologies. Here, we studied the impact of the virus on the metabolism of polyamines and proline as well as on the urea cycle, which plays a crucial role in liver function. It was found that HCV strongly suppresses the expression of arginase, a key enzyme of the urea cycle, leading to the accumulation of arginine, and up-regulates proline oxidase with a concomitant decrease in proline concentrations. The addition of exogenous proline moderately suppressed viral replication. HCV up-regulated transcription but suppressed protein levels of polyamine-metabolizing enzymes. This resulted in a decrease in polyamine content in infected cells. Finally, compounds targeting polyamine metabolism demonstrated pronounced antiviral activity, pointing to spermine and spermidine as compounds affecting HCV replication. These data expand our understanding of HCV’s imprint on cell metabolism.

Abstract Background Lipid A is the primary immunostimulatory part of the lipopolysaccharide (LPS) molecule. The inflammatory response of LPS varies and depends upon the number of acyl chains and phosphate groups in lipid A which is specific for a bacterial species or strain. Traditional LPS quantification assays cannot distinguish between the acylation degree of lipid A molecules, and therefore little is known about how bacteria with different inflammation-inducing potencies affect fractional exhaled nitric oxide (FeNO). We aimed to explore the association between pro-inflammatory hexa- and less inflammatory penta-acylated LPS-producing oral bacteria and FeNO as a marker of airway inflammation. Methods We used data from a population-based adult cohort from Norway (n = 477), a study center of the RHINESSA multi-center generation study. We applied statistical methods on the bacterial community- (prediction with MiRKAT) and genus-level (differential abundance analysis with ANCOM-BC) to investigate the association between the oral microbiota composition and FeNO. Results We found the overall composition to be significantly associated with increasing FeNO levels independent of covariate adjustment, and abundances of 27 bacterial genera to differ in individuals with high FeNO vs. low FeNO levels. Hexa- and penta-acylated LPS producers made up 2.4% and 40.8% of the oral bacterial genera, respectively. The Bray–Curtis dissimilarity within hexa- and penta-acylated LPS-producing oral bacteria was associated with increasing FeNO levels independent of covariate adjustment. A few single penta-acylated LPS producers were more abundant in individuals with low FeNO vs. high FeNO, while hexa-acylated LPS producers were found not to be enriched. Conclusions In a population-based adult cohort, FeNO was observed to be associated with the overall oral bacterial community composition. The effect of hexa- and penta-acylated LPS-producing oral bacteria was overall significant when focusing on Bray–Curtis dissimilarity within each of the two communities and FeNO levels, but only penta-acylated LPS producers appeared to be reduced or absent in individuals with high FeNO. It is likely that the pro-inflammatory effect of hexa-acylated LPS producers is counteracted by the dominance of the more abundant penta-acylated LPS producers in this population-based adult cohort involving mainly healthy individuals.

Fungal metabarcoding of substrates such as soil, wood, and water is uncovering an unprecedented number of fungal species that do not seem to produce tangible morphological structures and that defy our best attempts at cultivation, thus falling outside the scope of the International Code of Nomenclature for algae, fungi, and plants. The present study uses the new, ninth release of the species hypotheses of the UNITE database to show that species discovery through environmental sequencing vastly outpaces traditional, Sanger sequencing-based efforts in a strongly increasing trend over the last five years. Our findings challenge the present stance of some in the mycological community – that the current situation is satisfactory and that no change is needed to “the code” – and suggest that we should be discussing not whether to allow DNA-based descriptions (typifications) of species and by extension higher ranks of fungi, but what the precise requirements for such DNA-based typifications should be. We submit a tentative list of such criteria for further discussion. The present authors hope for a revitalized and deepened discussion on DNA-based typification, because to us it seems harmful and counter-productive to intentionally deny the overwhelming majority of extant fungi a formal standing under the International Code of Nomenclature for algae, fungi, and plants.

Ion implantation in diamond crystals is widely used both for producing conducting microstructures in the bulk of the material and for creating isolated photon emitters in quantum optics, photonics, cryptography, and biosensorics. The photoluminescence (PL) spectra of helium ion-implanted diamonds are dominated by two sharp emission lines, HR1 and HR2 (from Helium-Related), at ~536 and 560 nm. Here, we report on PL studies of helium-related optical centers in diamonds. Experiments have been carried out on a (110) plate of natural single-crystal type IIa diamonds. The uniform distribution of radiation defects in a 700 nm-thick layer was obtained by ten cycles of multiple-energy (from 24 to 350 kV) helium ion implantation with a total dose of 5 × 1016 cm−2. The diamonds were annealed in steps in a vacuum oven at temperatures from 200 to 1040 °C. It is demonstrated that helium ion implantation in diamonds followed by annealing gives rise to more than a dozen various centers that are observed in the PL spectra in the range of 530–630 nm. The transformations of the PL spectra due to annealing are investigated in detail. The spectral shapes of phonon sidebands are determined for the HR1, HR2, and HR3 bands with ZPLs at ~536, 560, and 577 nm, respectively, and it is shown that these bands are attributed to interstitial-related centers in diamonds. The reported results are important for understanding the structure and properties of helium-related defects in diamonds. [ABSTRACT FROM AUTHOR]

In this work, the nanostructure of oxide dispersion-strengthened steels was studied by small-angle neutron scattering (SANS), transmission electron microscopy (TEM), and atom probe tomography (APT). The steels under study have different alloying systems differing in their contents of Cr, V, Ti, Al, and Zr. The methods of local analysis of TEM and APT revealed a significant number of nanosized oxide particles and clusters. Their sizes, number densities, and compositions were determined. A calculation of hardness from SANS data collected without an external magnetic field, or under a 1.1 T field, showed good agreement with the microhardness of the materials. The importance of taking into account two types of inclusions (oxides and clusters) and both nuclear and magnetic scattering was shown by the analysis of the scattering data.

The complexity of milling metal matrix composite alloys based on aluminum like Al/SiC is due to their low melting point and high abrasive ability, which causes increased wear of carbide tools. One of the effective ways to improve its reliability and service life is to modify the surface by plasma chemical deposition of carbon-based multilayer functional layers from vapor (CVD) with high hardness and thermal conductivity: diamond-like (DLC) or polycrystalline diamond (PCD) coatings. Experiments on an indexable mill with CoroMill 200 inserts have shown that initial tool life increases up to 100% for cases with DLC and up to 300% for multilayered MCD/NCD films at a cutting speed of 800 m/min. The primary mechanism of wear of a carbide tool in this cutting mode was soft abrasion, when wear on both the rake and flank surfaces occurred due to the extrusion of cobalt binder between tungsten carbide grains, followed by their loss. Analysis of the wear pattern of plates with DLC and MCD/NCD coatings showed that abrasive wear begins to prevail against the background of soft abrasion. Adhesive wear is also present to a lesser extent, but there is no chipping of the base material from the cutting edge.

Thermal conductivity κ (T) of single-crystal CVD diamond lightly doped (about 3 ppm) with nitrogen has been measured at temperatures from 5.7 to 410 K. The sample was carefully characterized by optical absorption and photoluminescence spectroscopy for the presence of impurities. Nine different optically active defects related with nitrogen, hydrogen, and silicon impurities have been identified and quantified. This pink-tint crystal showed a high thermal conductivity of 24.0 ± 0.5 W cm − 1 K − 1 at room temperature, which is very close to the highest value ever measured at about 25 W cm − 1 K − 1 for diamonds of natural isotopic composition. At the same time, the κ (T) of the crystal showed strong suppression > --> 10 % at temperatures 6 < T < 120 K with a maximum decrease of 2.7 times at ≈ 40 K compared to high purity diamonds. This behavior of the conductivity is attributed to a phonon scattering by charge carriers bound to nitrogen-related impurity centers, which is ineffective, however, at room and higher temperatures. The κ (T) has been calculated within the model based on the Callaway theory taking into account the elastic phonon scattering off charge carriers (holes and electrons) in the ground states of doping centers, and a very good agreement between the measured and theoretical data has been achieved. The model also gives a good approximation to the experimental data for κ (T) given in the literature for synthetic and natural single-crystal diamonds. [ABSTRACT FROM AUTHOR]

The international DNA sequence databases abound in fungal sequences not annotated beyond the kingdom level, typically bearing names such as “uncultured fungus”. These sequences beget low-resolution mycological results and invite further deposition of similarly poorly annotated entries. What do these sequences represent? This study uses a 767,918-sequence corpus of public full-length fungal ITS sequences to estimate what proportion of the 95,055 “uncultured fungus” sequences that represent truly unidentifiable fungal taxa – and what proportion of them that would have been straightforward to annotate to some more meaningful taxonomic level at the time of sequence deposition. Our results suggest that more than 70% of these sequences would have been trivial to identify to at least the order/family level at the time of sequence deposition, hinting that factors other than poor availability of relevant reference sequences explain the low-resolution names. We speculate that researchers’ perceived lack of time and lack of insight into the ramifications of this problem are the main explanations for the low-resolution names. We were surprised to find that more than a fifth of these sequences seem to have been deposited by mycologists rather than researchers unfamiliar with the consequences of poorly annotated fungal sequences in molecular repositories. The proportion of these needlessly poorly annotated sequences does not decline over time, suggesting that this problem must not be left unchecked.