44 results on '"Kharel Y"'
Search Results
2. Sphingosine-1-Phosphate Attenuates Lung Injury in Murine Model of Ex Vivo Lung Perfusion
- Author
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Mehaffey, J.H., primary, Charles, E.J., additional, Hawkins, R.B., additional, Schubert, S.A., additional, Kharel, Y., additional, Tribble, C.G., additional, Laubach, V.E., additional, Lynch, K., additional, Sharma, A., additional, and Kron, I.L., additional
- Published
- 2017
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3. TREATMENT OF IDIOPATHIC SCOLIOSIS BY HARRINGTON INSTRUMENTATION
- Author
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Bajracharya, Ashok Raj, primary, Chhetri, R S, primary, Kharel, Y R, primary, Chalise, P, primary, Rai, P, primary, and Giri, S K, primary
- Published
- 2003
- Full Text
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4. Identification of Significant residues for homoallylic substrate binding of Micrococcus luteus B-P 26 undecaprenyl diphosphate synthase.
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Kharel, Y, Zhang, Y W, Fujihashi, M, Miki, K, and Koyama, T
- Abstract
The primary structure of cis-prenyltransferase is totally different from those of trans-prenyltransferases (Shimizu, N., Koyama, T., and Ogura, K. (1998) J. Biol. Chem. 272, 19476-19481). To better understand the molecular mechanism of enzymatic cis-prenyl chain elongation, we selected seven charged residues in the conserved Region V and two of Phe-Ser motif in Region III of undecaprenyl diphosphate synthase of Micrococcus luteus B-P 26 for substitutions by site-directed mutagenesis and examined their effects on substrate binding and catalysis. Kinetic studies indicated that replacements of Arg-197 or Arg-203 with Ser, and Glu-216 with Gln resulted in 7-11-fold increases of Km values for isopentenyl diphosphate and 18-1200-fold decreases of kcat values compared with those of the wild-type enzyme. In addition, two mutants with respect to the Phe-Ser motif in Region III, F73A and S74A, showed 16-32-fold larger Km values for isopentenyl diphosphate and 12-16-fold lower kcat values than those of the wild-type. Furthermore, product analysis indicated that three mutants, F73A, S74A, and E216Q, yielded shorter chain prenyl diphosphates as their main products. These facts together with the protein structural analysis recently carried out (Fujihashi, M., Zhang, Y.-W., Higuchi, Y., Li, X.-Y., Koyama, T., and Miki, K. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 4337-4342) indicated that the diphosphate moiety of homoallylic substrate is electrostatically recognized by the three charged amino acids, Arg-197, Arg-203, and Glu-216, in Region V and the Phe-Ser motif in Region III, also indispensable for homoallylic substrate binding as well as catalytic function. It was suggested that the undecaprenyl diphosphate synthase takes a different mode for the binding of isopentenyl diphosphate from that of trans-prenyl chain elongating enzymes.
- Published
- 2001
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5. Overexpression, purification, and characterization of selenomethionyl farnesyl diphosphate synthase of Bacillus stearothermophilus
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Zhang, Y. W., Kharel, Y., and Koyama, T.
- Published
- 2000
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6. Discovery of Potent, Orally Bioavailable Sphingosine-1-Phosphate Transporter (Spns2) Inhibitors.
- Author
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Foster DJ, Dunnavant K, Shrader CW, LoPresti M, Seay S, Kharel Y, Brown AM, Huang T, Lynch KR, and Santos WL
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- Humans, Animals, Structure-Activity Relationship, Mice, Administration, Oral, HeLa Cells, Benzoxazoles chemistry, Benzoxazoles pharmacology, Benzoxazoles chemical synthesis, Benzoxazoles pharmacokinetics, Models, Molecular, Biological Availability, Mice, Inbred C57BL, Drug Discovery
- Abstract
Targeting the S1P pathway has resulted in the development of S1P1 receptor modulators for the treatment of multiple sclerosis and ulcerative colitis. We hypothesize that targeting an upstream node of the S1P pathway may provide an improved adverse event profile. In this report, we performed a structure-activity relationship study focusing on the benzoxazole scaffold in SLB1122168 , which lead to the discovery of 11i ( SLF80821178 ) as a potent inhibitor of S1P release from HeLa cells (IC
50 : 51 ± 3 nM). Administration of SLF80821178 to mice induced ∼50% reduction in circulating lymphocyte counts, recapitulating the lymphopenia characteristic of Spns2 null animals. Molecular modeling studies suggest that SLF80821178 binds Spns2 in its occluded inward-facing state and forms hydrogen bonds with Asn112 and Ser211 and π stacking with Phe234. Taken together, SLF80821178 can serve as a scaffold for future inhibitor development and represents a chemical tool to study the therapeutic implication of inhibiting Spns2.- Published
- 2024
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7. Assessing Spns2-dependent S1P Transport as a Prospective Therapeutic Target.
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Kharel Y, Huang T, Dunnavant K, Foster D, Souza G, Nimchuk KE, Merchak AR, Pavelec CM, Juskiewicz ZJ, Gaultier A, Abbott S, Shin JB, Isakson BE, Xu W, Leitinger N, Santos WL, and Lynch KR
- Abstract
S1P (sphingosine 1-phosphate) receptor modulator (SRM) drugs interfere with lymphocyte trafficking by downregulating lymphocyte S1P receptors. While the immunosuppressive activity of SRM drugs has proved useful in treating autoimmune diseases such as multiple sclerosis, that drug class is beset by on-target liabilities such as initial dose bradycardia. The S1P that binds to cell surface lymphocyte S1P receptors is provided by S1P transporters. Mice born deficient in one of these, spinster homolog 2 (Spns2), are lymphocytopenic and have low lymph S1P concentrations. Such observations suggest that inhibition of Spns2-mediated S1P transport might provide another therapeutically beneficial method to modulate immune cell positioning. We report here results using a novel S1P transport blocker (STB), SLF80821178, to investigate the consequences of S1P transport inhibition in rodents. We found that SLF80821178 is efficacious in a multiple sclerosis model but - unlike the SRM fingolimod - neither decreases heart rate nor compromises lung endothelial barrier function. Notably, although Spns2 null mice have a sensorineural hearing defect, mice treated chronically with SLF80821178 have normal hearing acuity. STBs such as SLF80821178 evoke a dose-dependent decrease in peripheral blood lymphocyte counts, which affords a reliable pharmacodynamic marker of target engagement. However, the maximal reduction in circulating lymphocyte counts in response to SLF80821178 is substantially less than the response to SRMs such as fingolimod (50% vs. 90%) due to a lesser effect on T lymphocyte sub-populations by SLF80821178. Finally, in contrast to results obtained with Spns2 deficient mice, lymph S1P concentrations were not significantly changed in response to administration of STBs at doses that evoke maximal lymphopenia, which indicates that current understanding of the mechanism of action of S1P transport inhibitors is incomplete.
- Published
- 2024
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8. Correction: Mechanism of sphingosine 1-phosphate clearance from blood.
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Kharel Y, Huang T, Salamon A, Harris TE, Santos WL, and Lynch KR
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- 2023
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9. Imidazole-based sphingosine-1-phosphate transporter Spns2 inhibitors.
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Shrader CW, Foster D, Kharel Y, Huang T, Lynch KR, and Santos WL
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- Humans, HeLa Cells, Imidazoles pharmacology, Anion Transport Proteins physiology, Lysophospholipids, Sphingosine pharmacology
- Abstract
Sphingosine-1-phosphate (S1P) is a chemotactic lipid that influences immune cell positioning. S1P concentration gradients are necessary for proper egress of lymphocytes from the thymus and secondary lymphoid tissues. This trafficking is interdicted by S1P receptor modulators, and it is expected that S1P transporter (Spns2) inhibitors, by reshaping S1P concentration gradients, will do the same. We previously reported SLF1081851 as a prototype Spns2 inhibitor, which provided a scaffold to investigate the importance of the oxadiazole core and the terminal amine. In this report, we disclose a structure-activity relationship study by incorporating imidazole as both a linker and surrogate for a positive charge in SLF1081851. In vitro inhibition of Spns2-dependent S1P transport in HeLa cells identified 7b as an inhibitor with an IC
50 of 1.4 ± 0.3 µM. The SAR studies reported herein indicate that imidazolium can be a substitute for the terminal amine in SLF1081851 and that Spns2 inhibition is highly dependent on the lipid alkyl tail length., Competing Interests: Declaration of Competing Interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: W.L.S. and K.R.L. are the co-founders of S1P Therapeutics Inc, which was created to commercialize S1P-related discoveries, including Spns2 inhibitors, discovered and characterized in their laboratories., (Copyright © 2023 Elsevier Ltd. All rights reserved.)- Published
- 2023
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10. Assay of Sphingosine 1-phosphate Transporter Spinster Homolog 2 (Spns2) Inhibitors.
- Author
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Kharel Y, Huang T, Santos WL, and Lynch KR
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- Animals, Chromatography, Liquid, Sphingosine metabolism, Mammals metabolism, Tandem Mass Spectrometry, Lysophospholipids metabolism
- Abstract
The sphingosine-1-phosphate (S1P) pathway remains an active area of research for drug discovery because S1P modulators are effective medicine for autoimmune diseases such as multiple sclerosis and ulcerative colitis. As such, other nodes in the pathway can be probed for alternative therapeutic candidates. As S1P elicits its function in an 'outside-in' fashion, targeting the transporter, Spns2, which is upstream of the receptors, is of great interest. To support our medicinal chemistry campaign to inhibit S1P transport, we developed a mammalian cell-based assay. In this protocol, Spns2 inhibition is assessed by treating HeLa, U-937, and THP-1 cells with inhibitors and S1P exported in the extracellular milieu is quantified by LC-MS/MS. Our studies demonstrated that the amount of S1P in the media in inversely proportional to inhibitor concentration. The details of our investigations are described herein., Competing Interests: Declaration of Competing Interest Two authors (WLS & KRL) are among the co-founders of S1P Therapeutics Inc, which was created to commercialize S1P-related discoveries (including S1P transport inhibitors) from their laboratories., (Copyright © 2023. Published by Elsevier Inc.)
- Published
- 2023
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11. 2-Aminobenzoxazole Derivatives as Potent Inhibitors of the Sphingosine-1-Phosphate Transporter Spinster Homolog 2 (Spns2).
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Burgio AL, Shrader CW, Kharel Y, Huang T, Salamoun JM, Lynch KR, and Santos WL
- Subjects
- Animals, Mice, Rats, Anion Transport Proteins physiology, Sphingosine, Sphingosine-1-Phosphate Receptors, Lymphocytes, Lysophospholipids
- Abstract
The S1P1 receptor is the target of four marketed drugs for the treatment of multiple sclerosis and ulcerative colitis. Targeting an S1P exporter, specifically Spns2, that is "upstream" of S1P receptor engagement is an alternate strategy that might recapitulate the efficacy of S1P receptor modulators without cardiac toxicity. We recently reported the first Spns2 inhibitor SLF1081851 ( 16d) that has modest potency with in vivo activity. To develop more potent compounds, we initiated a structure-activity relationship study that identified 2-aminobenzoxazole as a viable scaffold. Our studies revealed SLB1122168 ( 33p ), which is a potent inhibitor (IC
50 = 94 ± 6 nM) of Spns2-mediated S1P release. Administration of 33p to mice and rats resulted in a dose-dependent decrease in circulating lymphocytes, a pharmacodynamic indication of Spns2 inhibition. 33p provides a valuable tool compound to explore both the therapeutic potential of targeting Spns2 and the physiologic consequences of selective S1P export inhibition.- Published
- 2023
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12. Sphingosine Kinase 2 Inhibitors: Rigid Aliphatic Tail Derivatives Deliver Potent and Selective Analogues.
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Pashikanti S, Foster DJ, Kharel Y, Brown AM, Bevan DR, Lynch KR, and Santos WL
- Abstract
Sphingosine 1-phosphate (S1P) is a pleiotropic signaling molecule that interacts with five native G-protein coupled receptors (S1P1-5) to regulate cell growth, survival, and proliferation. S1P has been implicated in a variety of pathologies including cancer, kidney fibrosis, and multiple sclerosis. As key mediators in the synthesis of S1P, sphingosine kinase (SphK) isoforms 1 and 2 have attracted attention as viable targets for pharmacologic intervention. In this report, we describe the design, synthesis, and biological evaluation of sphingosine kinase 2 (SphK2) inhibitors with a focus on systematically introducing rigid structures in the aliphatic lipid tail present in existing SphK2 inhibitors. Experimental as well as molecular modeling studies suggest that conformationally restricted "lipophilic tail" analogues bearing a bulky terminal moiety or an internal phenyl ring are useful to complement the "J"-shaped sphingosine binding pocket of SphK2. We identified 14c (SLP9101555) as a potent SphK2 inhibitor ( K
i = 90 nM) with 200-fold selectivity over SphK1. Molecular docking studies indicated key interactions: the cyclohexyl ring binding in the cleft deep in the pocket, a trifluoromethyl group fitting in a small side cavity, and a hydrogen bond between the guanidino group and Asp308 (amino acid numbering refers to human SphK2 (isoform c) orthologue). In vitro studies using U937 human histiocytic lymphoma cells showed marked decreases in extracellular S1P levels in response to our SphK2 inhibitors. Administration of 14c (dose: 5 mg/kg) to mice resulted in a sustained increase of circulating S1P levels, suggesting target engagement., Competing Interests: The authors declare the following competing financial interest(s): W.L.S. and K.R.L. are among the co-founders of Flux Therapeutics Inc, which was created to commercialize S1P-related discoveries, including SphK inhibitors, discovered and characterized in their laboratories., (© 2022 The Authors. Published by American Chemical Society.)- Published
- 2022
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13. Sphingosine 1-phosphate signaling in perivascular cells enhances inflammation and fibrosis in the kidney.
- Author
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Tanaka S, Zheng S, Kharel Y, Fritzemeier RG, Huang T, Foster D, Poudel N, Goggins E, Yamaoka Y, Rudnicka KP, Lipsey JE, Radel HV, Ryuh SM, Inoue T, Yao J, Rosin DL, Schwab SR, Santos WL, Lynch KR, and Okusa MD
- Subjects
- Animals, Fibrosis, Humans, Kidney metabolism, Lysophospholipids, Mice, Sphingosine analogs & derivatives, Inflammation metabolism, Renal Insufficiency, Chronic
- Abstract
Chronic kidney disease (CKD), characterized by sustained inflammation and progressive fibrosis, is highly prevalent and can eventually progress to end-stage kidney disease. However, current treatments to slow CKD progression are limited. Sphingosine 1-phosphate (S1P), a product of sphingolipid catabolism, is a pleiotropic mediator involved in many cellular functions, and drugs targeting S1P signaling have previously been studied particularly for autoimmune diseases. The primary mechanism of most of these drugs is functional antagonism of S1P receptor-1 (S1P1) expressed on lymphocytes and the resultant immunosuppressive effect. Here, we documented the role of local S1P signaling in perivascular cells in the progression of kidney fibrosis using primary kidney perivascular cells and several conditional mouse models. S1P was predominantly produced by sphingosine kinase 2 in kidney perivascular cells and exported via spinster homolog 2 (Spns2). It bound to S1P1 expressed in perivascular cells to enhance production of proinflammatory cytokines/chemokines upon injury, leading to immune cell infiltration and subsequent fibrosis. A small-molecule Spns2 inhibitor blocked S1P transport, resulting in suppression of inflammatory signaling in human and mouse kidney perivascular cells in vitro and amelioration of kidney fibrosis in mice. Our study provides insight into the regulation of inflammation and fibrosis by S1P and demonstrates the potential of Spns2 inhibition as a treatment for CKD and potentially other inflammatory and fibrotic diseases that avoids the adverse events associated with systemic modulation of S1P receptors.
- Published
- 2022
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14. Discovery of In Vivo Active Sphingosine-1-phosphate Transporter (Spns2) Inhibitors.
- Author
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Fritzemeier R, Foster D, Peralta A, Payette M, Kharel Y, Huang T, Lynch KR, and Santos WL
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- Animals, HeLa Cells, Humans, Mice, Rats, Sphingosine analogs & derivatives, Sphingosine metabolism, Anion Transport Proteins genetics, Anion Transport Proteins metabolism, Lysophospholipids metabolism
- Abstract
Sphingosine 1-phosphate (S1P) is a pleiotropic signaling molecule that interacts with five G-protein-coupled receptors (S1P1-5) to regulate cellular signaling pathways. S1P export is facilitated by Mfsd2b and spinster homologue 2 (Spns2). While mouse genetic studies suggest that Spns2 functions to maintain lymph S1P, Spns2 inhibitors are necessary to understand its biology and to learn whether Spns2 is a viable drug target. Herein, we report a structure-activity relationship study that identified the first Spns2 inhibitor 16d (SLF1081851). In vitro studies in HeLa cells demonstrated that 16d inhibited S1P release with an IC
50 of 1.93 μM. Administration of 16d to mice and rats drove significant decreases in circulating lymphocyte counts and plasma S1P concentrations, recapitulating the phenotype observed in mice made deficient in Spns2. Thus, 16d has the potential for development and use as a probe to investigate Spns2 biology and to determine the potential of Spns2 as a drug target.- Published
- 2022
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15. A Novel Sphingosine Kinase Inhibitor Suppresses Chikungunya Virus Infection.
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Oyewole OO, Dunnavant K, Bhattarai S, Kharel Y, Lynch KR, Santos WL, and Reid SP
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- Antiviral Agents therapeutic use, Cell Line, Humans, Phosphotransferases (Alcohol Group Acceptor), Protein Kinase Inhibitors pharmacology, Quality of Life, Sphingosine metabolism, Virus Replication, Chikungunya Fever, Chikungunya virus genetics
- Abstract
Chikungunya virus (CHIKV) is a re-emerging arbovirus in the alphavirus genus. Upon infection, it can cause severe joint pain that can last years in some patients, significantly affecting their quality of life. Currently, there are no vaccines or anti-viral therapies available against CHIKV. Its spread to the Americas from the eastern continents has substantially increased the count of the infected by millions. Thus, there is an urgent need to identify therapeutic targets for CHIKV treatment. A potential point of intervention is the sphingosine-1-phosphate (S1P) pathway. Conversion of sphingosine to S1P is catalyzed by Sphingosine kinases (SKs), which we previously showed to be crucial pro-viral host factor during CHIKV infection. In this study, we screened inhibitors of SKs and identified a novel potent inhibitor of CHIKV infection-SLL3071511. We showed that the pre-treatment of cells with SLL3071511 in vitro effectively inhibited CHIKV infection with an EC
50 value of 2.91 µM under both prophylactic and therapeutic modes, significantly decreasing the viral gene expression and release of viral particles. Our studies suggest that targeting SKs is a viable approach for controlling CHIKV replication.- Published
- 2022
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16. Ilizarov Ring External Fixation for Complex Tibial Plateau Fractures.
- Author
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Ghimire A, Devkota P, Bhandari KK, Kharel Y, and Pradhan S
- Abstract
Objective To analyze the results of clinical, radiological, and functional outcomes of tibial plateau fracture (Schatzker Type V, VI) treated with Illizarov ring external fixator with or without minimum opening. Methods A total of 52 tibial plateau fractures of type V, VI were treated with Ilizarov ring external fixator with or without mininum internal fixation were studied. Functional outcome assessment was done using the American Knee Society (AKS) score with clinical, radiological union, and complications were analyzed. Results There were 37 (71.15%) male and 15 (28.84%) female patients, with a mean age of 39.07 ± 12.58 years old. Road traffic accidents (RTAs) were the major cause of fracture, accounting for 32 cases (61.53%) followed by fall injury, with 16 cases (30.76%), and direct impact, with 4 cases (7.69%). Twenty-one (40.38%) cases were type V and 31 (59.61%) cases were type VI fractures, and there were 24 (46.15%) cases of open fracture. The mean AKS score of Type V and Type VI fractures were 82.8 and 80.70, respectively, but this was statistically not significant at p <0.05. The mean AKS score of closed and open fractures were also statistically not significant at p <0.05. Conclusions For Schatzker Types V and VI complex tibial plateau fractures, Ilizarov external fixation is a safe, cost-effective and efficient treatment method that presents a satisfactory outcome., Competing Interests: Conflito de Interesses Os autores não têm conflitos de interesse para declarar., (Sociedade Brasileira de Ortopedia e Traumatologia. This is an open access article published by Thieme under the terms of the Creative Commons Attribution-NonDerivative-NonCommercial License, permitting copying and reproduction so long as the original work is given appropriate credit. Contents may not be used for commecial purposes, or adapted, remixed, transformed or built upon. ( https://creativecommons.org/licenses/by-nc-nd/4.0/ ).)
- Published
- 2021
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17. Probing the substitution pattern of indole-based scaffold reveals potent and selective sphingosine kinase 2 inhibitors.
- Author
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Congdon M, Fritzemeier RG, Kharel Y, Brown AM, Serbulea V, Bevan DR, Lynch KR, and Santos WL
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- Dose-Response Relationship, Drug, Enzyme Inhibitors chemical synthesis, Enzyme Inhibitors chemistry, Humans, Indoles chemical synthesis, Indoles chemistry, Molecular Docking Simulation, Molecular Structure, Phosphotransferases (Alcohol Group Acceptor) metabolism, Structure-Activity Relationship, Enzyme Inhibitors pharmacology, Indoles pharmacology, Phosphotransferases (Alcohol Group Acceptor) antagonists & inhibitors
- Abstract
Elevated levels of sphingosine 1-phosphate (S1P) and increased expression of sphingosine kinase isoforms (SphK1 and SphK2) have been implicated in a variety of disease states including cancer, inflammation, and autoimmunity. Consequently, the S1P signaling axis has become an attractive target for drug discovery. Selective inhibition of either SphK1 or SphK2 has been demonstrated to be effective in modulating S1P levels in animal models. While SphK1 inhibitors have received much attention, the development of potent and selective SphK2 inhibitors are emerging. Previously, our group reported a SphK2 naphthalene-based selective inhibitor, SLC5081308, which displays approximately 7-fold selectivity for hSphK2 over hSphK1 and has a SphK2 K
i value of 1.0 μM. To improve SphK2 potency and selectivity, we designed, synthesized, and evaluated a series of indole-based compounds derived from SLC5081308. After investigating substitution patterns around the indole ring, we discovered that 1,5-disubstitution promoted optimal binding in the SphK2 substrate binding site and subsequent inhibition of enzymatic activity. Our studies led to the identification of SLC5101465 (6r, SphK2 Ki = 90 nM, >110 fold selective for SphK2 over SphK1). Molecular modeling studies revealed key nonpolar interactions with Val308, Phe548, His556, and Cys533 and hydrogen bonds with both Asp211 and Asp308 as responsible for the high SphK2 inhibition and selectivity., Competing Interests: Declaration of competing interest The authors declare the following competing financial interest(s): W.L.S. and K.R.L. are among the co-founders of Flux Therapeutics Inc, which was created to commercialize S1P-related discoveries, including SphK inhibitors, discovered and characterized in their laboratories., (Copyright © 2020 Elsevier Masson SAS. All rights reserved.)- Published
- 2021
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18. Lipophilic tail modifications of 2-(hydroxymethyl)pyrrolidine scaffold reveal dual sphingosine kinase 1 and 2 inhibitors.
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Li H, Sibley CD, Kharel Y, Huang T, Brown AM, Wonilowicz LG, Bevan DR, Lynch KR, and Santos WL
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- Dose-Response Relationship, Drug, Enzyme Inhibitors chemical synthesis, Enzyme Inhibitors chemistry, Humans, Hydrophobic and Hydrophilic Interactions, Models, Molecular, Molecular Structure, Phosphotransferases (Alcohol Group Acceptor), Pyrrolidines chemical synthesis, Pyrrolidines chemistry, Structure-Activity Relationship, Enzyme Inhibitors pharmacology, Pyrrolidines pharmacology
- Abstract
The sphingosine 1-phosphate (S1P) signaling pathway is an attractive target for pharmacological manipulation due to its involvement in cancer progression and immune cell chemotaxis. The synthesis of S1P is catalyzed by the action of sphingosine kinase 1 or 2 (SphK1 or SphK2) on sphingosine and ATP. While potent and selective inhibitors of SphK1 or SphK2 have been reported, development of potent dual SphK1/SphK2 inhibitors are still needed. Towards this end, we report the structure-activity relationship profiling of 2-(hydroxymethyl)pyrrolidine-based inhibitors with 22d being the most potent dual SphK1/SphK2 inhibitor (SphK1 K
i = 0.679 μM, SphK2 Ki = 0.951 μM) reported in this series. 22d inhibited the growth of engineered Saccharomyces cerevisiae and decreased S1P levels in histiocytic lymphoma myeloid cell line (U937 cells), demonstrating inhibition of SphK1 and 2 in vitro. Molecular modeling studies of 22d docked inside the Sph binding pocket of both SphK1 and SphK2 indicate essential hydrogen bond between the 2-(hydroxymethyl)pyrrolidine head to interact with aspartic acid and serine residues near the ATP binding pocket, which provide the basis for dual inhibition. In addition, the dodecyl tail adopts a "J-shape" conformation found in crystal structure of sphingosine bound to SphK1. Collectively, these studies provide insight into the intermolecular interactions in the SphK1 and 2 active sites to achieve maximal dual inhibitory activity., (Copyright © 2020. Published by Elsevier Ltd.)- Published
- 2021
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19. Mechanism of sphingosine 1-phosphate clearance from blood.
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Kharel Y, Huang T, Salamon A, Harris TE, Santos WL, and Lynch KR
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- Animals, Female, Humans, Lysophospholipids genetics, Male, Mice, Mice, Inbred C57BL, Mice, Knockout, Phosphotransferases (Alcohol Group Acceptor) deficiency, Phosphotransferases (Alcohol Group Acceptor) genetics, Sphingosine blood, Sphingosine genetics, Hepatocytes metabolism, Lysophospholipids blood, Metabolic Clearance Rate physiology, Sphingosine analogs & derivatives
- Abstract
The interplay of sphingosine 1-phosphate (S1P) synthetic and degradative enzymes as well as S1P exporters creates concentration gradients that are a fundamental to S1P biology. Extracellular S1P levels, such as in blood and lymph, are high relative to cellular S1P. The blood-tissue S1P gradient maintains endothelial integrity while local S1P gradients influence immune cell positioning. Indeed, the importance of S1P gradients was recognized initially when the mechanism of action of an S1P receptor agonist used as a medicine for multiple sclerosis was revealed to be inhibition of T-lymphocytes' recognition of the high S1P in efferent lymph. Furthermore, the increase in erythrocyte S1P in response to hypoxia influences oxygen delivery during high altitude acclimatization. However, understanding of how S1P gradients are maintained is incomplete. For example, S1P is synthesized but is only slowly metabolized by blood yet circulating S1P turns over quickly by an unknown mechanism. Prompted by the counterintuitive observation that blood S1P increases markedly in response to inhibition S1P synthesis (by sphingosine kinase 2 (SphK2)), we studied mice wherein several tissues were made deficient in either SphK2 or S1P degrading enzymes. Our data reveal a mechanism whereby S1P is de-phosphorylated at the hepatocyte surface and the resulting sphingosine is sequestered by SphK phosphorylation and in turn degraded by intracellular S1P lyase. Thus, we identify the liver as the primary site of blood S1P clearance and provide an explanation for the role of SphK2 in this process. Our discovery suggests a general mechanism whereby S1P gradients are shaped., (© 2020 The Author(s).)
- Published
- 2020
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20. Discovery of a Small Side Cavity in Sphingosine Kinase 2 that Enhances Inhibitor Potency and Selectivity.
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Sibley CD, Morris EA, Kharel Y, Brown AM, Huang T, Bevan DR, Lynch KR, and Santos WL
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- Amidines chemical synthesis, Amidines chemistry, Animals, Binding Sites, Drug Discovery, Humans, Mice, Inbred C57BL, Molecular Docking Simulation, Molecular Structure, Oxadiazoles chemical synthesis, Oxadiazoles chemistry, Phosphotransferases (Alcohol Group Acceptor) metabolism, Protein Binding, Protein Kinase Inhibitors chemical synthesis, Protein Kinase Inhibitors chemistry, Pyrrolidines chemical synthesis, Pyrrolidines chemistry, Saccharomyces cerevisiae, Structure-Activity Relationship, Amidines pharmacology, Oxadiazoles pharmacology, Phosphotransferases (Alcohol Group Acceptor) antagonists & inhibitors, Protein Kinase Inhibitors pharmacology, Pyrrolidines pharmacology
- Abstract
The sphingosine-1-phosphate (S1P) signaling pathway is an attractive drug target due to its involvement in immune cell chemotaxis and vascular integrity. The formation of S1P is catalyzed by sphingosine kinase 1 or 2 (SphK1 or SphK2) from sphingosine (Sph) and ATP. Inhibition of SphK1 and SphK2 to attenuate levels of S1P has been reported to be efficacious in animal models of diseases such as cancer, sickle cell disease, and renal fibrosis. While inhibitors of both SphKs have been reported, improvements in potency and selectivity are still needed. Toward that end, we performed structure-activity relationship profiling of 8 (SLM6031434) and discovered a heretofore unrecognized side cavity that increased inhibitor potency toward SphK2. Interrogating this region revealed that relatively small hydrophobic moieties are preferred, with 10 being the most potent SphK2-selective inhibitor ( K
i = 89 nM, 73-fold SphK2-selective) with validated in vivo activity.- Published
- 2020
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21. Photoacoustic microscopy reveals the hemodynamic basis of sphingosine 1-phosphate-induced neuroprotection against ischemic stroke.
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Cao R, Li J, Kharel Y, Zhang C, Morris E, Santos WL, Lynch KR, Zuo Z, and Hu S
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- Animals, Brain diagnostic imaging, Brain metabolism, Brain Ischemia diagnostic imaging, Brain Ischemia metabolism, Hemodynamics, Humans, Lysophospholipids chemistry, Male, Mice, Microscopy, Oxygen metabolism, Phosphotransferases (Alcohol Group Acceptor) metabolism, Photoacoustic Techniques, Sphingosine blood, Sphingosine chemistry, Stroke diagnostic imaging, Stroke metabolism, Brain Ischemia prevention & control, Enzyme Inhibitors administration & dosage, Lysophospholipids blood, Neuroprotection drug effects, Neuroprotective Agents administration & dosage, Sphingosine analogs & derivatives, Stroke prevention & control
- Abstract
Rationale: Emerging evidence has suggested that sphingosine 1-phosphate (S1P), a bioactive metabolite of sphingolipids, may play an important role in the pathophysiological processes of cerebral hypoxia and ischemia. However, the influence of S1P on cerebral hemodynamics and metabolism remains unclear. Material and Methods: Uniquely capable of high-resolution, label-free, and comprehensive imaging of hemodynamics and oxygen metabolism in the mouse brain without the influence of general anesthesia, our newly developed head-restrained multi-parametric photoacoustic microscopy (PAM) is well suited for this mechanistic study. Here, combining the cutting-edge PAM and a selective inhibitor of sphingosine kinase 2 (SphK2) that can increase the blood S1P level, we investigated the role of S1P in cerebral oxygen supply-demand and its neuroprotective effects on global brain hypoxia induced by nitrogen gas inhalation and focal brain ischemia induced by transient middle cerebral artery occlusion (tMCAO). Results: Inhibition of SphK2, which increased the blood S1P, resulted in the elevation of both arterial and venous sO
2 in the hypoxic mouse brain, while the cerebral blood flow remained unchanged. As a result, it gradually and significantly reduced the metabolic rate of oxygen. Furthermore, pre-treatment of the mice subject to tMCAO with the SphK2 inhibitor led to decreased infarct volume, improved motor function, and reduced neurological deficit, compared to the control treatment with a less potent R-enantiomer. In contrast, post-treatment with the inhibitor showed no improvement in the stroke outcomes. The failure for the post-treatment to induce neuroprotection was likely due to the relatively slow hemodynamic responses to the SphK2 inhibitor-evoked S1P intervention, which did not take effect before the brain injury was induced. Conclusions: Our results reveal that elevated blood S1P significantly changes cerebral hemodynamics and oxygen metabolism under hypoxia but not normoxia. The improved blood oxygenation and reduced oxygen demand in the hypoxic brain may underlie the neuroprotective effect of S1P against ischemic stroke., Competing Interests: Competing Interests: The authors have declared that no competing interest exists.- Published
- 2018
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22. Saccharomyces cerevisiae as a platform for assessing sphingolipid lipid kinase inhibitors.
- Author
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Kharel Y, Agah S, Huang T, Mendelson AJ, Eletu OT, Barkey-Bircann P, Gesualdi J, Smith JS, Santos WL, and Lynch KR
- Subjects
- Animals, High-Throughput Screening Assays methods, Humans, Methanol, Mice, Mutation, Phosphotransferases (Alcohol Group Acceptor) genetics, Phosphotransferases (Alcohol Group Acceptor) metabolism, Pyrrolidines pharmacology, Saccharomyces cerevisiae drug effects, Saccharomyces cerevisiae genetics, Sphingolipids genetics, Sphingolipids metabolism, Sulfones pharmacology, Drug Evaluation, Preclinical methods, Enzyme Inhibitors pharmacology, Phosphotransferases (Alcohol Group Acceptor) antagonists & inhibitors, Saccharomyces cerevisiae enzymology
- Abstract
Successful medicinal chemistry campaigns to discover and optimize sphingosine kinase inhibitors require a robust assay for screening chemical libraries and for determining rank order potencies. Existing assays for these enzymes are laborious, expensive and/or low throughput. The toxicity of excessive levels of phosphorylated sphingoid bases for the budding yeast, Saccharomyces cerevisiae, affords an assay wherein inhibitors added to the culture media rescue growth in a dose-dependent fashion. Herein, we describe our adaptation of a simple, inexpensive, and high throughput assay for assessing inhibitors of sphingosine kinase types 1 and 2 as well as ceramide kinase and for testing enzymatic activity of sphingosine kinase type 2 mutants. The assay was validated using recombinant enzymes and generally agrees with the rank order of potencies of existing inhibitors.
- Published
- 2018
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23. Transforming Sphingosine Kinase 1 Inhibitors into Dual and Sphingosine Kinase 2 Selective Inhibitors: Design, Synthesis, and in Vivo Activity.
- Author
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Childress ES, Kharel Y, Brown AM, Bevan DR, Lynch KR, and Santos WL
- Subjects
- Animals, Drug Design, Humans, In Vitro Techniques, Mice, Rats, Enzyme Inhibitors pharmacology, Phosphotransferases (Alcohol Group Acceptor) antagonists & inhibitors
- Abstract
Sphingosine 1-phosphate (S1P) is a pleiotropic signaling molecule that interacts with its five G-protein coupled receptors (S1P
1-5 ) to regulate cell growth and survival and has been implicated in a variety of diseases including cancer and sickle cell disease. As the key mediators in the synthesis of S1P, sphingosine kinase (SphK) isoforms 1 and 2 have attracted attention as viable targets for pharmaceutical inhibition. In this article, we describe the design, synthesis, and biological evaluation of aminothiazole-based guanidine inhibitors of SphK. Surprisingly, combining features of reported SphK1 inhibitors generated SphK1/2 dual inhibitor 20l (SLC4011540) (hSphK1 Ki = 120 nM, hSphK2 Ki = 90 nM) and SphK2 inhibitor 20dd (SLC4101431) (Ki = 90 nM, 100-fold SphK2 selectivity). These compounds effectively decrease S1P levels in vitro. In vivo administration of 20dd validated that inhibition of SphK2 increases blood S1P levels.- Published
- 2017
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24. Structural Requirements and Docking Analysis of Amidine-Based Sphingosine Kinase 1 Inhibitors Containing Oxadiazoles.
- Author
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Houck JD, Dawson TK, Kennedy AJ, Kharel Y, Naimon ND, Field SD, Lynch KR, and Macdonald TL
- Abstract
Sphingosine 1-phosphate (S1P) is a potent growth-signaling lipid that has been implicated in cancer progression, inflammation, sickle cell disease, and fibrosis. Two sphingosine kinases (SphK1 and 2) are the source of S1P; thus, inhibitors of the SphKs have potential as targeted cancer therapies and will help to clarify the roles of S1P and the SphKs in other hyperproliferative diseases. Recently, we reported a series of amidine-based inhibitors with high selectivity for SphK1 and potency in the nanomolar range. However, these inhibitors display a short half-life. With the goal of increasing metabolic stability and maintaining efficacy, we designed an analogous series of molecules containing oxadiazole moieties. Generation of a library of molecules resulted in the identification of the most selective inhibitor of SphK1 reported to date (705-fold selectivity over SphK2), and we found that potency and selectivity vary significantly depending on the particular oxadiazole isomer employed. The best inhibitors were subjected to in silico molecular dynamics docking analysis, which revealed key insights into the binding of amidine-based inhibitors by SphK1. Herein, the design, synthesis, biological evaluation, and docking analysis of these molecules are described.
- Published
- 2016
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25. Structure-Activity Relationship Studies and Molecular Modeling of Naphthalene-Based Sphingosine Kinase 2 Inhibitors.
- Author
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Congdon MD, Kharel Y, Brown AM, Lewis SN, Bevan DR, Lynch KR, and Santos WL
- Abstract
The two isoforms of sphingosine kinase (SphK1 and SphK2) are the only enzymes that phosphorylate sphingosine to sphingosine-1-phosphate (S1P), which is a pleiotropic lipid mediator involved in a broad range of cellular processes including migration, proliferation, and inflammation. SphKs are targets for various diseases such as cancer, fibrosis, and Alzheimer's and sickle cell disease. Herein, we disclose the structure-activity profile of naphthalene-containing SphK inhibitors and molecular modeling studies that reveal a key molecular switch that controls SphK selectivity.
- Published
- 2016
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26. Structure-activity relationship studies of the lipophilic tail region of sphingosine kinase 2 inhibitors.
- Author
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Congdon MD, Childress ES, Patwardhan NN, Gumkowski J, Morris EA, Kharel Y, Lynch KR, and Santos WL
- Subjects
- Dose-Response Relationship, Drug, Enzyme Inhibitors chemical synthesis, Humans, Molecular Structure, Phosphotransferases (Alcohol Group Acceptor) metabolism, Pyrrolidines chemical synthesis, Structure-Activity Relationship, Enzyme Inhibitors chemistry, Enzyme Inhibitors pharmacology, Phosphotransferases (Alcohol Group Acceptor) antagonists & inhibitors, Pyrrolidines chemistry, Pyrrolidines pharmacology
- Abstract
Sphingosine-1-phosphate (S1P) is a ubiquitous, endogenous small molecule that is synthesized by two isoforms of sphingosine kinase (SphK1 and 2). Intervention of the S1P signaling pathway has attracted significant attention because alteration of S1P levels is linked to several disease states including cancer, fibrosis, and sickle cell disease. While intense investigations have focused on developing SphK1 inhibitors, only a limited number of SphK2-selective agents have been reported. Herein, we report our investigations on the structure-activity relationship studies of the lipophilic tail region of SLR080811, a SphK2-selective inhibitor. Our studies demonstrate that the internal phenyl ring is a key structural feature that is essential in the SLR080811 scaffold. Further, we show the dependence of SphK2 activity and selectivity on alkyl tail length, suggesting a larger lipid binding pocket in SphK2 compared to SphK1., (Copyright © 2015 Elsevier Ltd. All rights reserved.)
- Published
- 2015
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27. Sphingosine Kinase 2 Inhibition and Blood Sphingosine 1-Phosphate Levels.
- Author
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Kharel Y, Morris EA, Congdon MD, Thorpe SB, Tomsig JL, Santos WL, and Lynch KR
- Subjects
- Animals, Drug Design, Enzyme Inhibitors pharmacokinetics, Male, Mice, Rats, Sphingosine blood, Substrate Specificity, Enzyme Inhibitors pharmacology, Lysophospholipids blood, Phosphotransferases (Alcohol Group Acceptor) antagonists & inhibitors, Sphingosine analogs & derivatives
- Abstract
Sphingosine 1-phosphate (S1P) levels are significantly higher in blood and lymph than in tissues. This S1P concentration difference is necessary for proper lymphocyte egress from secondary lymphoid tissue and to maintain endothelial barrier integrity. Studies with mice lacking either sphingosine kinase (SphK) type 1 and 2 indicate that these enzymes are the sole biosynthetic source of S1P, but they play different roles in setting S1P blood levels. We have developed a set of drug-like SphK inhibitors, with differing selectivity for the two isoforms of this enzyme. Although all SphK inhibitors tested decrease S1P when applied to cultured U937 cells, only those inhibitors with a bias for SphK2 drove a substantial increase in blood S1P in mice and this rise was detectable within minutes of administration of the inhibitor. Blood S1P also increased in response to SphK2 inhibitors in rats. Mass-labeled S1P was cleared more slowly after intravenous injection into SphK2 inhibitor-treated mice or mice lacking a functional SphK2 gene; thus, the increased accumulation of S1P in the blood appears to result from the decreased clearance of S1P from the blood. Therefore, SphK2 appears to have a function independent of generating S1P in cells. Our results suggest that differential SphK inhibition with a drug might afford a method to manipulate blood S1P levels in either direction while lowering tissue S1P levels., (Copyright © 2015 by The American Society for Pharmacology and Experimental Therapeutics.)
- Published
- 2015
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28. Structure-activity relationship studies and in vivo activity of guanidine-based sphingosine kinase inhibitors: discovery of SphK1- and SphK2-selective inhibitors.
- Author
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Patwardhan NN, Morris EA, Kharel Y, Raje MR, Gao M, Tomsig JL, Lynch KR, and Santos WL
- Subjects
- Dose-Response Relationship, Drug, Guanidine chemical synthesis, Guanidine chemistry, Molecular Structure, Phosphotransferases (Alcohol Group Acceptor) metabolism, Protein Kinase Inhibitors chemical synthesis, Structure-Activity Relationship, Drug Discovery, Guanidine pharmacology, Phosphotransferases (Alcohol Group Acceptor) antagonists & inhibitors, Protein Kinase Inhibitors chemistry, Protein Kinase Inhibitors pharmacology
- Abstract
Sphingosine 1-phosphate (S1P) is a pleiotropic signaling molecule that acts as a ligand for five G-protein coupled receptors (S1P1-5) whose downstream effects are implicated in a variety of important pathologies including sickle cell disease, cancer, inflammation, and fibrosis. The synthesis of S1P is catalyzed by sphingosine kinase (SphK) isoforms 1 and 2, and hence, inhibitors of this phosphorylation step are pivotal in understanding the physiological functions of SphKs. To date, SphK1 and 2 inhibitors with the potency, selectivity, and in vivo stability necessary to determine the potential of these kinases as therapeutic targets are lacking. Herein, we report the design, synthesis, and structure-activity relationship studies of guanidine-based SphK inhibitors bearing an oxadiazole ring in the scaffold. Our studies demonstrate that SLP120701, a SphK2-selective inhibitor (Ki = 1 μM), decreases S1P levels in histiocytic lymphoma (U937) cells. Surprisingly, homologation with a single methylene unit between the oxadiazole and heterocyclic ring afforded a SphK1-selective inhibitor in SLP7111228 (Ki = 48 nM), which also decreased S1P levels in cultured U937 cells. In vivo application of both compounds, however, resulted in contrasting effect in circulating levels of S1P. Administration of SLP7111228 depressed blood S1P levels while SLP120701 increased levels of S1P. Taken together, these compounds provide an in vivo chemical toolkit to interrogate the effect of increasing or decreasing S1P levels and whether such a maneuver can have implications in disease states.
- Published
- 2015
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29. Effect of alkyl chain length on sphingosine kinase 2 selectivity.
- Author
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Knott K, Kharel Y, Raje MR, Lynch KR, and Santos WL
- Subjects
- Cyclohexylamines chemistry, Enzyme Inhibitors chemical synthesis, Enzyme Inhibitors chemistry, Enzyme Inhibitors metabolism, Fingolimod Hydrochloride, Isoenzymes antagonists & inhibitors, Isoenzymes metabolism, Phosphotransferases (Alcohol Group Acceptor) metabolism, Propylene Glycols chemical synthesis, Propylene Glycols metabolism, Protein Binding, Sphingosine chemical synthesis, Sphingosine chemistry, Sphingosine metabolism, Structure-Activity Relationship, Phosphotransferases (Alcohol Group Acceptor) antagonists & inhibitors, Propylene Glycols chemistry, Sphingosine analogs & derivatives
- Abstract
The conversion of sphingosine to sphingosine-1-phosphate is catalyzed by sphingosine kinase (SphK), which has been implicated in disease states such as cancer and fibrosis. Because SphK exists as two different isoforms, SphK1 and SphK2, understanding the physiological function of each isoenzyme is important. Of the two isoenzymes, SphK2 is significantly less understood, which is evident by the lack of selective small molecule inhibitors. Building on our initial work that focused on the structure-activity relationship study on an FTY720-derived cylohexylamine scaffold, we report that varying the alkyl chain length on the hydrophobic tail can impart selectivity toward SphK2 over SphK1., (Copyright © 2012 Elsevier Ltd. All rights reserved.)
- Published
- 2012
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30. Sphingosine kinase type 2 inhibition elevates circulating sphingosine 1-phosphate.
- Author
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Kharel Y, Raje M, Gao M, Gellett AM, Tomsig JL, Lynch KR, and Santos WL
- Subjects
- Animals, Drug Design, Enzyme Inhibitors chemistry, Enzyme Inhibitors pharmacokinetics, Enzyme Inhibitors pharmacology, Humans, Isoenzymes antagonists & inhibitors, Isoenzymes deficiency, Isoenzymes genetics, Mice, Mice, Inbred C57BL, Mice, Knockout, Molecular Structure, Oxadiazoles chemistry, Oxadiazoles pharmacokinetics, Oxadiazoles pharmacology, Phosphotransferases (Alcohol Group Acceptor) classification, Phosphotransferases (Alcohol Group Acceptor) deficiency, Phosphotransferases (Alcohol Group Acceptor) genetics, Recombinant Proteins antagonists & inhibitors, Recombinant Proteins genetics, Sphingolipids metabolism, Sphingosine blood, U937 Cells, Lysophospholipids blood, Phosphotransferases (Alcohol Group Acceptor) antagonists & inhibitors, Sphingosine analogs & derivatives
- Abstract
S1P (sphingosine 1-phosphate) is a pleiotropic lipid mediator involved in numerous cellular and physiological functions. Of note among these are cell survival and migration, as well as lymphocyte trafficking. S1P, which exerts its effects via five GPCRs (G-protein-coupled receptors) (S1P1-S1P5), is formed by the action of two SphKs (sphingosine kinases). Although SphK1 is the more intensively studied isotype, SphK2 is unique in it nuclear localization and has been reported to oppose some of the actions ascribed to SphK1. Although several scaffolds of SphK1 inhibitors have been described, there is a scarcity of selective SphK2 inhibitors that are necessary to evaluate the downstream effects of inhibition of this isotype. In the present paper we report a cationic amphiphilic small molecule that is a selective SphK2 inhibitor. In the course of characterizing this compound in wild-type and SphK-null mice, we discovered that administration of the inhibitor to wild-type mice resulted in a rapid increase in blood S1P, which is in contrast with our SphK1 inhibitor that drives circulating S1P levels down. Using a cohort of F2 hybrid mice, we confirmed, compared with wild-type mice, that circulating S1P levels were higher in SphK2-null mice and lower in SphK1-null mice. Thus both SphK1 and SphK2 inhibitors recapitulate the blood S1P levels observed in the corresponding null mice. Moreover, circulating S1P levels mirror SphK2 inhibitor levels, providing a convenient biomarker of target engagement.
- Published
- 2012
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31. Biosynthesis of alkyl lysophosphatidic acid by diacylglycerol kinases.
- Author
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Gellett AM, Kharel Y, Sunkara M, Morris AJ, and Lynch KR
- Subjects
- Cell Line, Tumor, Diacylglycerol Kinase chemistry, Enzyme Activation, HEK293 Cells, Humans, Sphingosine analogs & derivatives, Diacylglycerol Kinase metabolism, Lysophospholipids biosynthesis
- Abstract
Lysophosphatidic acid (LPA) designates a family of bioactive phosphoglycerides that differ in the length and degree of saturation of their radyl chain. Additional diversity is provided by the linkage of the radyl chain to glycerol: acyl, alkyl, or alk-1-enyl. Acyl-LPAs are the predominate species in tissues and biological fluids. Alkyl-LPAs exhibit distinct pharmacodynamics at LPA receptors, potently drive platelet aggregation, and contribute to ovarian cancer aggressiveness. Multiple biosynthetic pathways exist for alkyl-LPA production. Herein we report that diacylglycerol kinases (DGKs) contribute to cell-associated alkyl-LPA production involving phosphorylation of 1-alkyl-2-acetyl glycerol and document the biosynthesis of alkyl-LPA by DGKs in SKOV-3 ovarian cancer cells, specifically identifying the contribution of DGKα. Concurrently, we discovered that treating SKOV-3 ovarian cancer cell with a sphingosine analog stimulates conversion of exogenous 1-alkyl-2-acetyl glycerol to alkyl-LPA, indicating that DGKα contributes significantly to the production of alkyl-LPA in SKOV-3 cells and identifying cross-talk between the sphingolipid and glycerol lipid pathways., (Copyright © 2012 Elsevier Inc. All rights reserved.)
- Published
- 2012
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32. Design, synthesis and biological activity of sphingosine kinase 2 selective inhibitors.
- Author
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Raje MR, Knott K, Kharel Y, Bissel P, Lynch KR, and Santos WL
- Subjects
- Antineoplastic Agents chemistry, Antineoplastic Agents pharmacology, Cell Line, Tumor, Enzyme Activation drug effects, Enzyme Inhibitors chemistry, Fingolimod Hydrochloride, Humans, Kinetics, Lysophospholipids chemistry, Phosphorylation, Phosphotransferases (Alcohol Group Acceptor) metabolism, Propylene Glycols chemistry, Sphingosine analogs & derivatives, Sphingosine chemistry, Structure-Activity Relationship, Antineoplastic Agents chemical synthesis, Drug Design, Enzyme Inhibitors chemical synthesis, Enzyme Inhibitors pharmacology, Phosphotransferases (Alcohol Group Acceptor) antagonists & inhibitors
- Abstract
Sphingosine kinase (SphK) has emerged as an attractive target for cancer therapeutics due to its role in cell survival. SphK phosphorylates sphingosine to form sphingosine 1-phosphate (S1P), which has been implicated in cancer growth and survival. SphK exists as two different isotypes, namely SphK1 and SphK2, which play different roles inside the cell. In this report, we describe SphK inhibitors based on the immunomodulatory drug, FTY720, which is phosphorylated by SphK2 to generate a S1P mimic. Structural modification of FTY720 provided a template for synthesizing new inhibitors. A diversity-oriented synthesis generated a library of SphK inhibitors with a novel scaffold and headgroup. We have discovered subtype selective inhibitors with K(i)'s in the low micromolar range. This is the first report describing quaternary ammonium salts as SphK inhibitors., (Copyright © 2011 Elsevier Ltd. All rights reserved.)
- Published
- 2012
- Full Text
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33. Sphingosine kinase type 1 inhibition reveals rapid turnover of circulating sphingosine 1-phosphate.
- Author
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Kharel Y, Mathews TP, Gellett AM, Tomsig JL, Kennedy PC, Moyer ML, Macdonald TL, and Lynch KR
- Subjects
- Amidines pharmacokinetics, Animals, Caspase 3 metabolism, Cell Line, Cell Survival drug effects, Extracellular Signal-Regulated MAP Kinases metabolism, Humans, Lysophospholipids blood, Mice, Mice, Inbred C57BL, Phosphorylation, Poly (ADP-Ribose) Polymerase-1, Poly(ADP-ribose) Polymerases metabolism, Proto-Oncogene Proteins c-akt metabolism, Pyrrolidines pharmacokinetics, Rats, Sphingolipids metabolism, Sphingosine blood, Sphingosine metabolism, Stereoisomerism, Amidines pharmacology, Lysophospholipids metabolism, Phosphotransferases (Alcohol Group Acceptor) antagonists & inhibitors, Pyrrolidines pharmacology, Sphingosine analogs & derivatives
- Abstract
S1P (sphingosine 1-phosphate) is a signalling molecule involved in a host of cellular and physiological functions, most notably cell survival and migration. S1P, which signals via a set of five G-protein-coupled receptors (S1P1-S1P5), is formed by the action of two SphKs (sphingosine kinases) from Sph (sphingosine). Interfering RNA strategies and SphK1 (sphingosine kinase type 1)-null (Sphk1-/-) mouse studies implicate SphK1 in multiple signalling cascades, yet there is a paucity of potent and selective SphK1 inhibitors necessary to evaluate the effects of rapid onset inhibition of this enzyme. We have identified a set of submicromolar amidine-based SphK1 inhibitors and report using a pair of these compounds to probe the cellular and physiological functions of SphK1. In so doing, we demonstrate that our inhibitors effectively lower S1P levels in cell-based assays, but we have been unable to correlate SphK1 inhibition with changes in cell survival. However, SphK1 inhibition did diminish EGF (epidermal growth factor)-driven increases in S1P levels and Akt (also known as protein kinase B)/ERK (extracellular-signal-regulated kinase) phosphorylation. Finally, administration of the SphK1 inhibitor to wild-type, but not Sphk1-/-, mice resulted in a rapid decrease in blood S1P levels indicating that circulating S1P is rapidly turned over.
- Published
- 2011
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34. Development of amidine-based sphingosine kinase 1 nanomolar inhibitors and reduction of sphingosine 1-phosphate in human leukemia cells.
- Author
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Kennedy AJ, Mathews TP, Kharel Y, Field SD, Moyer ML, East JE, Houck JD, Lynch KR, and Macdonald TL
- Subjects
- Cell Line, Tumor, Chemistry, Pharmaceutical methods, Drug Design, Enzyme Inhibitors pharmacology, Humans, Kinetics, Models, Chemical, Models, Molecular, Sphingosine antagonists & inhibitors, U937 Cells, Amidines chemistry, Antineoplastic Agents pharmacology, Gene Expression Regulation, Leukemic, Leukemia drug therapy, Lysophospholipids antagonists & inhibitors, Phosphotransferases (Alcohol Group Acceptor) antagonists & inhibitors, Sphingosine analogs & derivatives
- Abstract
Sphingosine 1-phosphate (S1P) is a bioactive lipid that has been identified as an accelerant of cancer progression. The sphingosine kinases (SphKs) are the sole producers of S1P, and thus, SphK inhibitors may prove effective in cancer mitigation and chemosensitization. Of the two SphKs, SphK1 overexpression has been observed in a myriad of cancer cell lines and tissues and has been recognized as the presumptive target over that of the poorly characterized SphK2. Herein, we present the design and synthesis of amidine-based nanomolar SphK1 subtype-selective inhibitors. A homology model of SphK1, trained with this library of amidine inhibitors, was then used to predict the activity of additional, more potent, inhibitors. Lastly, select amidine inhibitors were validated in human leukemia U937 cells, where they significantly reduced endogenous S1P levels at nanomolar concentrations.
- Published
- 2011
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35. A rapid assay for assessment of sphingosine kinase inhibitors and substrates.
- Author
-
Kharel Y, Mathews TP, Kennedy AJ, Houck JD, Macdonald TL, and Lynch KR
- Subjects
- Adenosine Triphosphate metabolism, Chromatography, High Pressure Liquid methods, Chromatography, Thin Layer, Enzyme Inhibitors isolation & purification, Kinetics, Lysophospholipids metabolism, Phosphorus Radioisotopes chemistry, Phosphotransferases (Alcohol Group Acceptor) metabolism, Scintillation Counting, Small Molecule Libraries chemistry, Sphingosine analogs & derivatives, Sphingosine metabolism, Substrate Specificity, Enzyme Inhibitors analysis, High-Throughput Screening Assays, Phosphotransferases (Alcohol Group Acceptor) antagonists & inhibitors
- Abstract
Sphingosine kinases (SphKs) catalyze the transfer of phosphate from adenosine triphosphate (ATP) to sphingosine to generate sphingosine 1-phosphate (S1P), an important bioactive lipid molecule that mediates a diverse range of cell signaling processes. The conventional assay of SphK enzymatic activity uses [γ-(32)P]ATP and sphingosine as substrates, with the radiolabeled S1P product recovered by organic extraction, displayed by thin layer chromatography, and quantified by liquid scintillation counting. Although this assay is sensitive and accurate, it is slow and labor-intensive; thus, it precludes the simultaneous screening of more than a few inhibitor compounds. Here we describe a 96-well assay for SphKs that is rapid and reproducible. Our method, which takes advantage of the limited solubility of S1P, detects radioactive S1P adhering to the plate by scintillation proximity counting. Our procedure obviates extraction into organic solvents, postreaction transfers, and chromatography. Furthermore, our assay enables assessment of both inhibitors and substrates, and it can detect endogenous SphK activity in cell and tissue extracts. The SphK kinetic parameter, K(m), and the K(i) values of inhibitors determined with our assay and the conventional assay were indistinguishable. These results document that our assay is well-suited for the screening of chemical libraries of SphK inhibitors., (Copyright © 2011 Elsevier Inc. All rights reserved.)
- Published
- 2011
- Full Text
- View/download PDF
36. Discovery, biological evaluation, and structure-activity relationship of amidine based sphingosine kinase inhibitors.
- Author
-
Mathews TP, Kennedy AJ, Kharel Y, Kennedy PC, Nicoara O, Sunkara M, Morris AJ, Wamhoff BR, Lynch KR, and Macdonald TL
- Subjects
- Amidines chemical synthesis, Animals, Cell Proliferation drug effects, Enzyme Inhibitors chemical synthesis, Humans, Mice, Myocytes, Smooth Muscle cytology, Myocytes, Smooth Muscle drug effects, Oxadiazoles chemistry, Phosphotransferases (Alcohol Group Acceptor) chemistry, Phosphotransferases (Alcohol Group Acceptor) metabolism, Protein Structure, Tertiary, Rats, Sphingosine metabolism, Structure-Activity Relationship, Substrate Specificity, Amidines chemistry, Amidines pharmacology, Drug Design, Enzyme Inhibitors chemistry, Enzyme Inhibitors pharmacology, Phosphotransferases (Alcohol Group Acceptor) antagonists & inhibitors
- Abstract
Sphingosine 1-phosphate (S1P), a potent phospholipid growth and trophic factor, is synthesized in vivo by two sphingosine kinases. Thus these kinases have been proposed as important drug targets for treatment of hyperproliferative diseases and inflammation. We report here a new class of amidine-based sphingosine analogues that are competitive inhibitors of sphingosine kinases exhibiting varying degrees of enzyme selectivity. These inhibitors display K(I) values in the submicromolar range for both sphingosine kinases and, in cultured vascular smooth muscle cells, decrease S1P levels and initiate growth arrest.
- Published
- 2010
- Full Text
- View/download PDF
37. Synthesis and biological evaluation of sphingosine kinase substrates as sphingosine-1-phosphate receptor prodrugs.
- Author
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Foss FW Jr, Mathews TP, Kharel Y, Kennedy PC, Snyder AH, Davis MD, Lynch KR, and Macdonald TL
- Subjects
- Animals, Fingolimod Hydrochloride, Humans, Immunosuppressive Agents chemistry, Immunosuppressive Agents pharmacology, Lymphopenia chemically induced, Mice, Prodrugs chemistry, Prodrugs pharmacology, Propanols chemistry, Propylene Glycols chemical synthesis, Propylene Glycols pharmacology, Receptors, Lysosphingolipid metabolism, Sphingosine chemical synthesis, Sphingosine chemistry, Sphingosine pharmacology, Structure-Activity Relationship, Immunosuppressive Agents chemical synthesis, Prodrugs chemical synthesis, Propanols chemical synthesis, Propylene Glycols chemistry, Receptors, Lysosphingolipid agonists, Sphingosine analogs & derivatives
- Abstract
In the search for bioactive sphingosine 1-phosphate (S1P) receptor ligands, a series of 2-amino-2-heterocyclic-propanols were synthesized. These molecules were discovered to be substrates of human-sphingosine kinases 1 and 2 (SPHK1 and SPHK2). When phosphorylated, the resultant phosphates showed varied activities at the five sphingosine-1-phosphate (S1P) receptors (S1P(1-5)). Agonism at S1P(1) was displayed in vivo by induction of lymphopenia. A stereochemical preference of the quaternary carbon was crucial for phosphorylation by the kinases and alters binding affinities at the S1P receptors. Oxazole and oxadiazole compounds are superior kinase substrates to FTY720, the prototypical prodrug immunomodulator, fingolimod (FTY720). The oxazole-derived structure was the most active for human SPHK2. Imidazole analogues were less active substrates for SPHKs, but more potent and selective agonists of the S1P(1) receptor; additionally, the imidazole class of compounds rendered mice lymphopenic.
- Published
- 2009
- Full Text
- View/download PDF
38. Divergent roles of sphingosine kinases in kidney ischemia-reperfusion injury.
- Author
-
Jo SK, Bajwa A, Ye H, Vergis AL, Awad AS, Kharel Y, Lynch KR, and Okusa MD
- Subjects
- Animals, Fingolimod Hydrochloride, Gene Expression Regulation, Enzymologic, Kidney enzymology, Kidney pathology, Kidney Diseases pathology, Lysophospholipids, Mice, Mice, Knockout, Propylene Glycols pharmacology, RNA, Messenger analysis, Reperfusion Injury immunology, Sphingosine analogs & derivatives, Sphingosine pharmacology, Kidney Diseases enzymology, Phosphotransferases (Alcohol Group Acceptor) physiology, Reperfusion Injury enzymology
- Abstract
Sphingosine-1-phosphate (S1P), produced by sphingosine kinase 1 (SphK1) or kinase 2 (SphK2), mediates biological effects through intracellular and/or extracellular mechanisms. Here we determined a role for these kinases in kidney injury of wild-type mice following ischemia-reperfusion. SphK1 but not SphK2 mRNA expression and activity increased in the kidney following injury relative to sham-operated animals. Although SphK1(-/-) mice had no alteration in renal function following injury, mice with a disrupted SphK2 gene (SphK2(tr/tr)) had histological damage and impaired function. The immune-modulating pro-drug, FTY720, an S1P agonist failed to provide protection in SphK2(tr/tr) mice. Injured kidneys of these mice showed increased neutrophil infiltration and neutrophil chemokine expression along with a 3- to 5-fold increase in expression of the G-protein-coupled receptor S1P(3) compared to heterozygous SphK2(+/tr) mice. Kidney function and reduced vascular permeability were preserved in S1P(3)(-/-) compared to S1P(3)(+/-) mice after ischemia-reperfusion injury, suggesting increased S1P(3) mRNA may play a role in the injury of SphK2(tr/tr) mice. Our study suggests that constitutive expression of SphK2 may contribute to reduced ischemia-reperfusion injury of the kidney, and its absence may enhance injury due to increased neutrophil infiltration and S1P(3) activation. We also confirm that SphK2 is necessary to mediate the protective effects of FTY720.
- Published
- 2009
- Full Text
- View/download PDF
39. Asymmetric synthesis of conformationally constrained fingolimod analogues--discovery of an orally active sphingosine 1-phosphate receptor type-1 agonist and receptor type-3 antagonist.
- Author
-
Zhu R, Snyder AH, Kharel Y, Schaffter L, Sun Q, Kennedy PC, Lynch KR, and Macdonald TL
- Subjects
- Animals, Calcium metabolism, Cell Line, Cricetinae, Cricetulus, Fingolimod Hydrochloride, Humans, Immunologic Factors chemistry, Immunologic Factors pharmacology, Mice, Phosphorylation, Phosphotransferases (Alcohol Group Acceptor) metabolism, Prodrugs chemistry, Prodrugs pharmacology, Propylene Glycols chemistry, Propylene Glycols pharmacology, Radioligand Assay, Sphingosine chemical synthesis, Sphingosine chemistry, Sphingosine pharmacology, Stereoisomerism, Structure-Activity Relationship, Immunologic Factors chemical synthesis, Prodrugs chemical synthesis, Propylene Glycols chemical synthesis, Receptors, Lysosphingolipid agonists, Receptors, Lysosphingolipid antagonists & inhibitors, Sphingosine analogs & derivatives
- Abstract
Compound 1 (FTY720, Fingolimod) represents a new generation of immunosuppressant that modulates lymphocyte trafficking by interacting with the S1P(1) receptor. Compound 1 also provides a template molecule for studying the molecular biology of S1P receptors and related enzymes (kinases and phosphatases). In this study, two conformationally constrained analogues of 1 ( 3a and 3c) were asymmetrically synthesized in high optical purity. In vitro assessment documented that both analogues are Sphk2 substrates, their phosphorylated species are potent S1P(1) receptor agonists, and 3a-P is a potent S1P 3 antagonist. After oral administration in mice, both compounds evoked lymphopenia, but their duration of action differed markedly.
- Published
- 2007
- Full Text
- View/download PDF
40. Manipulation of prenyl chain length determination mechanism of cis-prenyltransferases.
- Author
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Kharel Y, Takahashi S, Yamashita S, and Koyama T
- Subjects
- Alkyl and Aryl Transferases chemistry, Alkyl and Aryl Transferases drug effects, Alkyl and Aryl Transferases metabolism, Amino Acid Sequence, Catalysis, Micrococcus luteus enzymology, Models, Molecular, Molecular Sequence Data, Molecular Structure, Mutagenesis, Site-Directed, Protein Conformation, Protein Structure, Secondary, Stereoisomerism, Structure-Activity Relationship, Terpenes chemical synthesis, Terpenes pharmacology, Transferases drug effects, Transferases genetics, Terpenes chemistry, Transferases chemistry
- Abstract
The carbon backbones of Z,E-mixed isoprenoids are synthesized by sequential cis-condensation of isopentenyl diphosphate (IPP) and an allylic diphosphate through actions of a series of enzymes called cis-prenyltransferases. Recent molecular analyses of Micrococcus luteus B-P 26 undecaprenyl diphosphate (UPP, C55) synthase [Fujihashi M, Zhang Y-W, Higuchi Y, Li X-Y, Koyama T & Miki K (2001) Proc Natl Acad Sci USA98, 4337-4342.] showed that not only the primary structure but also the crystal structure of cis-prenyltransferases were totally different from those of trans-prenyltransferases. Although many studies on structure-function relationships of cis-prenyltransferases have been reported, regulation mechanisms for the ultimate prenyl chain length have not yet been elucidated. We report here that the ultimate chain length of prenyl products can be controlled through structural manipulation of UPP synthase of M. luteus B-P 26, based on comparisons between structures of various cis-prenyltransferases. Replacements of Ala72, Phe73, and Trp78, which are located in the proximity of the substrate binding site, with Leu--as in Z,E-farnesyl diphosphate (C15) synthase--resulted in shorter ultimate products with C(20-35). Additional mutation of F223H resulted in even shorter products. On the other hand, insertion of charged residues originating from long-chain cis-prenyltransferases into helix-3, which participates in constitution of the large hydrophobic cleft, resulted in lengthening of the ultimate product chain length, leading to C(60-75). These results helped us understand reaction mechanisms of cis-prenyltransferase including regulation of the ultimate prenyl chain-length.
- Published
- 2006
- Full Text
- View/download PDF
41. Sphingosine kinase 2 is required for modulation of lymphocyte traffic by FTY720.
- Author
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Kharel Y, Lee S, Snyder AH, Sheasley-O'neill SL, Morris MA, Setiady Y, Zhu R, Zigler MA, Burcin TL, Ley K, Tung KS, Engelhard VH, Macdonald TL, Pearson-White S, and Lynch KR
- Subjects
- Animals, Fingolimod Hydrochloride, Flow Cytometry, Homozygote, Immunosuppressive Agents metabolism, Lysophospholipids metabolism, Mice, Mice, Inbred C57BL, Mice, Knockout, Phosphorylation drug effects, Phosphotransferases (Alcohol Group Acceptor) genetics, Prodrugs metabolism, Prodrugs toxicity, Propylene Glycols metabolism, Reverse Transcriptase Polymerase Chain Reaction, Sphingosine analogs & derivatives, Sphingosine metabolism, Immunosuppressive Agents toxicity, Lymphocytes drug effects, Lymphocytes enzymology, Lymphopenia chemically induced, Lymphopenia enzymology, Phosphotransferases (Alcohol Group Acceptor) physiology, Propylene Glycols toxicity
- Abstract
Immunotherapeutic drugs that mimic sphingosine 1-phosphate (S1P) disrupt lymphocyte trafficking and cause T helper and T effector cells to be retained in secondary lymphoid tissue and away from sites of inflammation. The prototypical therapeutic agent, 2-alkyl-2-amino-1,3-propanediol (FTY720), stimulates S1P signaling pathways only after it is phosphorylated by one or more unknown kinases. We generated sphingosine kinase 2 (SPHK2) null mice to demonstrate that this kinase is responsible for FTY720 phosphorylation and thereby its subsequent actions on the immune system. Both systemic and lymphocyte-localized sources of SPHK2 contributed to FTY720 induced lymphopenia. Although FTY720 was selectively activated in vivo by SPHK2, other S1P pro-drugs can be phosphorylated to cause lymphopenia through the action of additional sphingosine kinases. Our results emphasize the importance of SPHK2 expression in both lymphocytes and other tissues for immune modulation and drug metabolism.
- Published
- 2005
- Full Text
- View/download PDF
42. In vivo interaction between the human dehydrodolichyl diphosphate synthase and the Niemann-Pick C2 protein revealed by a yeast two-hybrid system.
- Author
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Kharel Y, Takahashi S, Yamashita S, and Koyama T
- Subjects
- Alkyl and Aryl Transferases genetics, Carrier Proteins genetics, Glycoproteins genetics, Humans, Precipitin Tests, Protein Binding, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins metabolism, Transformation, Genetic, Two-Hybrid System Techniques, Vesicular Transport Proteins, Yeasts genetics, Yeasts metabolism, Alkyl and Aryl Transferases metabolism, Carrier Proteins metabolism, Glycoproteins metabolism
- Abstract
Dehydrodolichyl diphosphate (DedolPP) synthase catalyzes the sequential condensation of isopentenyl diphosphate with farnesyl diphosphate to synthesize DedolPP, a biosynthetic precursor for dolichol which plays an important role as a sugar-carrier lipid in the biosynthesis of glycoprotein in eukaryotic cells. During certain pathological processes like Alzheimer's disease or some neurological disorders, dolichol has been shown to accumulate in human brain. In order to understand the regulatory mechanism of dolichol in eukaryotes, we performed a yeast two-hybrid screen using full length human DedolPP synthase gene [Endo et al. BBA 1625 (2003) 291] as a bait to find some proteins specifically interacting with the enzyme. We identified Niemann-Pick Type C2 protein (NPC2) to show a specific interaction with human DedolPP synthase. This interaction was further confirmed by in vitro co-immunoprecipitation experiment, indicating the possible physiological interaction between NPC2 and DedolPP synthase proteins in human.
- Published
- 2004
- Full Text
- View/download PDF
43. Significance of highly conserved aromatic residues in Micrococcus luteus B-P 26 undecaprenyl diphosphate synthase.
- Author
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Kharel Y, Zhang YW, Fujihashi M, Miki K, and Koyama T
- Subjects
- Alkyl and Aryl Transferases genetics, Amino Acid Sequence, Bacterial Proteins genetics, Enzyme Stability genetics, Hot Temperature, Micrococcus luteus chemistry, Molecular Sequence Data, Mutagenesis, Site-Directed, Sequence Alignment, Sequence Homology, Amino Acid, Alkyl and Aryl Transferases chemistry, Bacterial Proteins chemistry, Conserved Sequence, Micrococcus luteus enzymology, Micrococcus luteus genetics
- Abstract
Undecaprenyl diphosphate synthase catalyzes the sequential condensation of eight molecules of isopentenyl diphosphate (IPP) in the cis-configuration into farnesyl diphosphate (FPP) to produce undecaprenyl diphosphate (UPP), which is indispensable for the biosynthesis of the bacterial cell wall. This cis-type prenyltransferase exhibits a quite different mode of binding of homoallylic substrate IPP from that of trans-type prenyltransferase [Kharel Y. et al. (2001) J. Biol. Chem. 276, 28459-28464]. In order to know the IPP binding mode in more detail, we selected six highly conserved residues in Regions III, IV, and V among nine conserved aromatic residues in Micrococcus luteus B-P 26 UPP synthase for substitution by site-directed mutagenesis. The mutant enzymes were expressed and purified to homogeneity, and then their effects on substrate binding and the catalytic function were examined. All of the mutant enzymes showed moderately similar far-UV CD spectra to that of the wild-type, indicating that none of the replacement of conserved aromatic residues affected the secondary structure of the enzyme. Kinetic analysis showed that the replacement of Tyr-71 with Ser in Region III, Tyr-148 with Phe in Region IV, and Trp-210 with Ala in Region V brought about 10-1,600-fold decreases in the kcat/Km values compared to that of the wild-type but the Km values for both substrates IPP and FPP resulted in only moderate changes. Substitution of Phe-207 with Ser in Region V resulted in a 13-fold increase in the Km value for IPP and a 1,000-2,000-fold lower kcat/Km value than those of the wild-type, although the Km values for FPP showed about no significant changes. In addition, the W224A mutant as to Region V showed 6-fold and 14-fold increased Km values for IPP and FPP, respectively, and 100-250-fold decreased kcat/Km values as compared to those of the wild-type. These results suggested that these conserved aromatic residues play important roles in the binding with both substrates, IPP and FPP, as well as the catalytic function of undecaprenyl diphosphate synthase.
- Published
- 2003
- Full Text
- View/download PDF
44. Molecular analysis of cis-prenyl chain elongating enzymes.
- Author
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Kharel Y and Koyama T
- Subjects
- Amino Acid Sequence, Biological Factors chemistry, Biological Factors metabolism, Catalysis, Crystallography, X-Ray, Models, Molecular, Molecular Sequence Data, Protein Conformation, Sequence Homology, Amino Acid, Stereoisomerism, Alkyl and Aryl Transferases chemistry, Alkyl and Aryl Transferases genetics, Alkyl and Aryl Transferases metabolism, Transferases analysis, Transferases chemistry, Transferases genetics, Transferases metabolism
- Abstract
Recent isolation of the gene for an undecaprenyl diphosphate synthase has disclosed the structures of many kinds of cis-prenyl chain elongating enzymes. Not only the primary structure but also the crystal structure of the cis-prenyltransferase is totally different from those of trans-prenyl chain elongating enzymes. This review covers up to February 2002 and contains 72 references.
- Published
- 2003
- Full Text
- View/download PDF
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