14 results on '"Khaminets, Aliaksandr"'
Search Results
2. Cohesin controls intestinal stem cell identity by maintaining association of Escargot with target promoters
- Author
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Khaminets, Aliaksandr, primary, Ronnen-Oron, Tal, additional, Baldauf, Maik, additional, Meier, Elke, additional, and Jasper, Heinrich, additional
- Published
- 2020
- Full Text
- View/download PDF
3. Author response: Cohesin controls intestinal stem cell identity by maintaining association of Escargot with target promoters
- Author
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Khaminets, Aliaksandr, primary, Ronnen-Oron, Tal, additional, Baldauf, Maik, additional, Meier, Elke, additional, and Jasper, Heinrich, additional
- Published
- 2019
- Full Text
- View/download PDF
4. The activation mechanism of Irga6, an interferon-inducible GTPase contributing to mouse resistance against Toxoplasma gondii
- Author
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Uthaiah Revathy C, Schmidt Andreas, Papic Natasa, Hunn Julia P, Khaminets Aliaksandr, Pawlowski Nikolaus, Lange Rita, Vopper Gabriela, Martens Sascha, Wolf Eva, and Howard Jonathan C
- Subjects
Biology (General) ,QH301-705.5 - Abstract
Abstract Background The interferon-inducible immunity-related GTPases (IRG proteins/p47 GTPases) are a distinctive family of GTPases that function as powerful cell-autonomous resistance factors. The IRG protein, Irga6 (IIGP1), participates in the disruption of the vacuolar membrane surrounding the intracellular parasite, Toxoplasma gondii, through which it communicates with its cellular hosts. Some aspects of the protein's behaviour have suggested a dynamin-like molecular mode of action, in that the energy released by GTP hydrolysis is transduced into mechanical work that results in deformation and ultimately rupture of the vacuolar membrane. Results Irga6 forms GTP-dependent oligomers in vitro and thereby activates hydrolysis of the GTP substrate. In this study we define the catalytic G-domain interface by mutagenesis and present a structural model, of how GTP hydrolysis is activated in Irga6 complexes, based on the substrate-twinning reaction mechanism of the signal recognition particle (SRP) and its receptor (SRα). In conformity with this model, we show that the bound nucleotide is part of the catalytic interface and that the 3'hydroxyl of the GTP ribose bound to each subunit is essential for trans-activation of hydrolysis of the GTP bound to the other subunit. We show that both positive and negative regulatory interactions between IRG proteins occur via the catalytic interface. Furthermore, mutations that disrupt the catalytic interface also prevent Irga6 from accumulating on the parasitophorous vacuole membrane of T. gondii, showing that GTP-dependent Irga6 activation is an essential component of the resistance mechanism. Conclusions The catalytic interface of Irga6 defined in the present experiments can probably be used as a paradigm for the nucleotide-dependent interactions of all members of the large family of IRG GTPases, both activating and regulatory. Understanding the activation mechanism of Irga6 will help to explain the mechanism by which IRG proteins exercise their resistance function. We find no support from sequence or G-domain structure for the idea that IRG proteins and the SRP GTPases have a common phylogenetic origin. It therefore seems probable, if surprising, that the substrate-assisted catalytic mechanism has been independently evolved in the two protein families.
- Published
- 2011
- Full Text
- View/download PDF
5. Coordinated loading of IRG resistance GTPases on to the Toxoplasma gondii parasitophorous vacuole
- Author
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Khaminets, Aliaksandr, Hunn, Julia P, Könen-Waisman, Stephanie, Zhao, Yang O, Preukschat, Daniela, Coers, Jörn, Boyle, Jon P, Ong, Yi-Ching, Boothroyd, John C, Reichmann, Gabriela, and Howard, Jonathan C
- Subjects
Mice ,GTP-Binding Proteins ,parasitic diseases ,Blotting, Western ,Vacuoles ,Animals ,Electrophoresis, Polyacrylamide Gel ,Original articles ,Immunohistochemistry ,Toxoplasma ,Cell Line - Abstract
The immunity-related GTPases (IRGs) constitute an interferon-induced intracellular resistance mechanism in mice against Toxoplasma gondii. IRG proteins accumulate on the parasitophorous vacuole membrane (PVM), leading to its disruption and to death of the parasite. How IRGs target the PVM is unknown. We show that accumulation of IRGs on the PVM begins minutes after parasite invasion and increases for about 1 h. Targeting occurs independently of several signalling pathways and the microtubule network, suggesting that IRG transport is diffusion-driven. The intensity of IRG accumulation on the PVM, however, is reduced in absence of the autophagy regulator, Atg5. In wild-type cells IRG proteins accumulate cooperatively on PVMs in a definite order reflecting a temporal hierarchy, with Irgb6 and Irgb10 apparently acting as pioneers. Loading of IRG proteins onto the vacuoles of virulent Toxoplasma strains is attenuated and the two pioneer IRGs are the most affected. The polymorphic rhoptry kinases, ROP16, ROP18 and the catalytically inactive proteins, ROP5A-D, are not individually responsible for this effect. Thus IRG proteins protect mice against avirulent strains of Toxoplasma but fail against virulent strains. The complex cooperative behaviour of IRG proteins in resisting Toxoplasma may hint at undiscovered complexity also in virulence mechanisms.
- Published
- 2010
6. Ubiquitin-Dependent And Independent Signals In Selective Autophagy
- Author
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Khaminets, Aliaksandr, primary, Behl, Christian, additional, and Dikic, Ivan, additional
- Published
- 2016
- Full Text
- View/download PDF
7. Regulation of endoplasmic reticulum turnover by selective autophagy
- Author
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CMM Groep de Rooij, Khaminets, Aliaksandr, Heinrich, Theresa, Mari, Muriel, Grumati, Paolo, Huebner, Antje K, Akutsu, Masato, Liebmann, Lutz, Stolz, Alexandra, Nietzsche, Sandor, Koch, Nicole, Mauthe, Mario, Katona, Istvan, Qualmann, Britta, Weis, Joachim, Reggiori, Fulvio, Kurth, Ingo, Hübner, Christian A, Dikic, Ivan, CMM Groep de Rooij, Khaminets, Aliaksandr, Heinrich, Theresa, Mari, Muriel, Grumati, Paolo, Huebner, Antje K, Akutsu, Masato, Liebmann, Lutz, Stolz, Alexandra, Nietzsche, Sandor, Koch, Nicole, Mauthe, Mario, Katona, Istvan, Qualmann, Britta, Weis, Joachim, Reggiori, Fulvio, Kurth, Ingo, Hübner, Christian A, and Dikic, Ivan
- Published
- 2015
8. Mechanisms of Cell-autonomous Resistance to Toxoplasma gondii in Mouse and Man
- Author
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Khaminets, Aliaksandr
- Subjects
ddc:570 ,parasitic diseases - Abstract
Toxoplasma gondii is a widespread protozoan parasite infecting all warm-blooded animals and causing disease in immunocompromised individuals and in utero. The pathogen depends on the intracellular life style residing in a specialized organelle, termed parasitophorous vacuole (PV), in order to survive and replicate. Cell-autonomous immunity, regulated by IFNg, is essential to restrict growth of the parasite in mouse and man. In mouse cells, resistance to T. gondii is mediated by the family of IFN-inducible IRG proteins (p47 GTPases). Upon infection several IRG proteins associate with the PV and participate in vesiculation of the PV membrane leading to demise of the parasite and necrotic death of the cell. Until now, despite intrinsic interest, the phenomenon of IRG protein loading onto PV has not been well studied. In human cells, depletion of cellular tryptophan by IDO has been reported as the major mechanism of restriction of T. gondii proliferation exerted by IFNg. IDO-independent restriction of T. gondii growth has been reported but not followed up. The process of IRG protein association with T. gondii vacuoles emerged as a rapid, organized and diffusion-driven event where multiple resistance proteins sequentially bind to the vacuolar membrane forming homomeric and heteromeric complexes. The efficient loading process requires the autophagy factor Atg5 regulating correct localisation of IRG proteins prior to infection. Virulent strains of T. gondii inhibit IRG protein association with PVs independently of individual virulence determinants ROP5, ROP16 and ROP18. Impaired loading of IRG proteins onto T. gondii vacuoles leads to reduced elimination of the parasite in IFNg-stimulated cells, underlining the importance of the phenomenon in cell-autonomous immunity to T. gondii. This study shows that density of cultured cells is the key factor in determining the mode of T. gondii control in primary human cells. IFNg-induced, proliferating cells control parasite replication independently of IDO. Consistent with absence of the IRG system in humans, the vacuolar membrane and enclosed parasite remain intact in IFNg-induced human cells. However, similar to mouse cells, human cells die by necrosis, when infected with T. gondii and stimulated with IFNg. This may not only suppress parasite growth but also amplify an antimicrobial response due to release of the proinflammatory �danger� signal HMGB1. Programmed necrosis could be efficiently suppressed at high densities of primary cells and in HeLa cell line, and tryptophan depletion becomes the main source of T. gondii control.
- Published
- 2010
9. The activation mechanism of Irga6, an interferon-inducible GTPase contributing to mouse resistance against Toxoplasma gondii
- Author
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Pawlowski, Nikolaus, Khaminets, Aliaksandr, Hunn, Julia, Papic, Natasa, Schmidt, Andreas, Uthaiah, Revathy Chottekalapanda, Lange, Rita, Vopper, Gabriela, Martens, Sascha, Wolf, Eva, Howard, Jonathan C., Pawlowski, Nikolaus, Khaminets, Aliaksandr, Hunn, Julia, Papic, Natasa, Schmidt, Andreas, Uthaiah, Revathy Chottekalapanda, Lange, Rita, Vopper, Gabriela, Martens, Sascha, Wolf, Eva, and Howard, Jonathan C.
- Abstract
Background: The interferon-inducible immunity-related GTPases (IRG proteins/p47 GTPases) are a distinctive family of GTPases that function as powerful cell-autonomous resistance factors. The IRG protein, Irga6 (IIGP1), participates in the disruption of the vacuolar membrane surrounding the intracellular parasite, Toxoplasma gondii, through which it communicates with its cellular hosts. Some aspects of the protein's behaviour have suggested a dynamin-like molecular mode of action, in that the energy released by GTP hydrolysis is transduced into mechanical work that results in deformation and ultimately rupture of the vacuolar membrane. Results: Irga6 forms GTP-dependent oligomers in vitro and thereby activates hydrolysis of the GTP substrate. In this study we define the catalytic G-domain interface by mutagenesis and present a structural model, of how GTP hydrolysis is activated in Irga6 complexes, based on the substrate-twinning reaction mechanism of the signal recognition particle (SRP) and its receptor (SRalpha). In conformity with this model, we show that the bound nucleotide is part of the catalytic interface and that the 3'hydroxyl of the GTP ribose bound to each subunit is essential for trans-activation of hydrolysis of the GTP bound to the other subunit. We show that both positive and negative regulatory interactions between IRG proteins occur via the catalytic interface. Furthermore, mutations that disrupt the catalytic interface also prevent Irga6 from accumulating on the parasitophorous vacuole membrane of T. gondii, showing that GTP-dependent Irga6 activation is an essential component of the resistance mechanism. Conclusions: The catalytic interface of Irga6 defined in the present experiments can probably be used as a paradigm for the nucleotide-dependent interactions of all members of the large family of IRG GTPases, both activating and regulatory. Understanding the activation mechanism of Irga6 will help to explain the mechanism by which IRG proteins ex
- Published
- 2011
10. The activation mechanism of Irga6, an interferon-inducible GTPase contributing to mouse resistance against Toxoplasma gondii
- Author
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Pawlowski, Nikolaus, primary, Khaminets, Aliaksandr, additional, Hunn, Julia P, additional, Papic, Natasa, additional, Schmidt, Andreas, additional, Uthaiah, Revathy C, additional, Lange, Rita, additional, Vopper, Gabriela, additional, Martens, Sascha, additional, Wolf, Eva, additional, and Howard, Jonathan C, additional
- Published
- 2011
- Full Text
- View/download PDF
11. Toxoplasma gondii and the Immunity-Related GTPase (IRG) resistance system in mice: a review
- Author
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Zhao, Yang Oliver, primary, Rohde, Christoph, additional, Lilue, Jing Tao, additional, Könen-Waisman, Stephanie, additional, Khaminets, Aliaksandr, additional, Hunn, Julia Petra, additional, and Howard, Jonathan Charles, additional
- Published
- 2009
- Full Text
- View/download PDF
12. Disruption of the Toxoplasma gondii Parasitophorous Vacuole by IFNγ-Inducible Immunity-Related GTPases (IRG Proteins) Triggers Necrotic Cell Death
- Author
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Zhao, Yang O., primary, Khaminets, Aliaksandr, additional, Hunn, Julia P., additional, and Howard, Jonathan C., additional
- Published
- 2009
- Full Text
- View/download PDF
13. The activation mechanism of Irga6, an interferoninducible GTPase contributing to mouse resistance against Toxoplasma gondii.
- Author
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Pawlowski, Nikolaus, Khaminets, Aliaksandr, Hunn, Julia P., Papic, Natasa, Schmidt, Andreas, Uthaiah, Revathy C., Lange, Rita, Vopper, Gabriela, Martens, Sascha, Wolf, Eva, and Howard, Jonathan C.
- Subjects
- *
TOXOPLASMA gondii , *HYDROLYSIS , *BIOMOLECULES , *GENETIC mutation , *INTRACELLULAR pathogens - Abstract
Background: The interferon-inducible immunity-related GTPases (IRG proteins/p47 GTPases) are a distinctive family of GTPases that function as powerful cell-autonomous resistance factors. The IRG protein, Irga6 (IIGP1), participates in the disruption of the vacuolar membrane surrounding the intracellular parasite, Toxoplasma gondii, through which it communicates with its cellular hosts. Some aspects of the protein's behaviour have suggested a dynaminlike molecular mode of action, in that the energy released by GTP hydrolysis is transduced into mechanical work that results in deformation and ultimately rupture of the vacuolar membrane. Results: Irga6 forms GTP-dependent oligomers in vitro and thereby activates hydrolysis of the GTP substrate. In this study we define the catalytic G-domain interface by mutagenesis and present a structural model, of how GTP hydrolysis is activated in Irga6 complexes, based on the substrate-twinning reaction mechanism of the signal recognition particle (SRP) and its receptor (SRα). In conformity with this model, we show that the bound nucleotide is part of the catalytic interface and that the 3'hydroxyl of the GTP ribose bound to each subunit is essential for trans-activation of hydrolysis of the GTP bound to the other subunit. We show that both positive and negative regulatory interactions between IRG proteins occur via the catalytic interface. Furthermore, mutations that disrupt the catalytic interface also prevent Irga6 from accumulating on the parasitophorous vacuole membrane of T. gondii, showing that GTP-dependent Irga6 activation is an essential component of the resistance mechanism. Conclusions: The catalytic interface of Irga6 defined in the present experiments can probably be used as a paradigm for the nucleotide-dependent interactions of all members of the large family of IRG GTPases, both activating and regulatory. Understanding the activation mechanism of Irga6 will help to explain the mechanism by which IRG proteins exercise their resistance function. We find no support from sequence or G-domain structure for the idea that IRG proteins and the SRP GTPases have a common phylogenetic origin. It therefore seems probable, if surprising, that the substrate-assisted catalytic mechanism has been independently evolved in the two protein families. [ABSTRACT FROM AUTHOR]
- Published
- 2011
- Full Text
- View/download PDF
14. Regulation of endoplasmic reticulum turnover by selective autophagy
- Author
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Paolo Grumati, Fulvio Reggiori, Muriel Mari, Aliaksandr Khaminets, Mario Mauthe, Antje K. Huebner, Britta Qualmann, Theresa Heinrich, Masato Akutsu, Nicole Koch, Sandor Nietzsche, Ingo Kurth, Ivan Dikic, Istvan Katona, Joachim Weis, Lutz Liebmann, Alexandra Stolz, Christian A. Hübner, Microbes in Health and Disease (MHD), Center for Liver, Digestive and Metabolic Diseases (CLDM), Khaminets, Aliaksandr, Heinrich, Theresa, Mari, Muriel, Grumati, Paolo, Huebner, Antje K, Akutsu, Masato, Liebmann, Lutz, Stolz, Alexandra, Nietzsche, Sandor, Koch, Nicole, Mauthe, Mario, Katona, Istvan, Qualmann, Britta, Weis, Joachim, Reggiori, Fulvio, Kurth, Ingo, Hübner, Christian A, and Dikic, Ivan
- Subjects
Nucleophagy ,Male ,PROTEIN ,Apoptosis ,Biomarkers/metabolism ,Lysosomes/metabolism ,Endoplasmic Reticulum ,Mice ,Phagosomes ,Non-U.S. Gov't ,PHOSPHORYLATION ,Membrane Protein ,Phagosome ,Sensory Receptor Cells/metabolism ,Apoptosis Regulatory Protein ,Multidisciplinary ,Research Support, Non-U.S. Gov't ,Intracellular Signaling Peptides and Proteins ,Adaptor Proteins ,LOCALIZATION ,Lysosome ,Endoplasmic Reticulum/chemistry ,Cell biology ,Neoplasm Proteins ,Biochemistry ,Microtubule-Associated Proteins/metabolism ,MACHINERY ,Female ,Autophagy/physiology ,Microtubule-Associated Proteins ,Human ,Protein Binding ,Phagosomes/metabolism ,Membrane Proteins/deficiency ,Sensory Receptor Cells ,GABARAP ,Reticulophagy ,Editorials: Cell Cycle Features ,Biology ,Research Support ,Cell Line ,Neoplasm Protein ,Neoplasm Proteins/deficiency ,Autophagy ,Journal Article ,Animals ,Humans ,Endomembrane system ,Adaptor Proteins, Signal Transducing ,Animal ,Endoplasmic reticulum ,Microtubule-Associated Protein ,Signal Transducing ,Apoptosi ,Membrane Proteins ,Biomarker ,DEGRADATION ,SALMONELLA ,Adaptor Proteins, Signal Transducing/metabolism ,Ion homeostasis ,ER ,Intracellular Signaling Peptides and Protein ,Reticulon ,CELLS ,Apoptosis Regulatory Proteins ,Lysosomes ,Biomarkers ,Gene Deletion - Abstract
The endoplasmic reticulum (ER) is the largest intracellular endomembrane system, enabling protein and lipid synthesis, ion homeostasis, quality control of newly synthesized proteins and organelle communication(1). Constant ER turnover and modulation is needed to meet different cellular requirements and autophagy has an important role in this process(2-8). However, its underlying regulatory mechanisms remain unexplained. Here we show that members of the FAM134 reticulon protein family are ER-resident receptors that bind to autophagy modifiers LC3 and GABARAP, and facilitate ER degradation by autophagy ('ER-phagy'). Downregulation of FAM134B protein in human cells causes an expansion of the ER, while FAM134B overexpression results in ER fragmentation and lysosomal degradation. Mutant FAM134B proteins that cause sensory neuropathy in humans(9) are unable to act as ER-phagy receptors. Consistently, disruption of Fam134b in mice causes expansion of the ER, inhibits ER turnover, sensitizes cells to stress-induced apoptotic cell death and leads to degeneration of sensory neurons. Therefore, selective ER-phagy via FAM134 proteins is indispensable for mammalian cell homeostasis and controls ER morphology and turnover in mice and humans.
- Published
- 2015
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